AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79171

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79171.t1 MTR_3g101030 79.765 425 66 4 39 443 5 429 0.0 666
MS.gene79171.t1 MTR_3g101050 73.274 449 61 8 1 442 1 397 0.0 606
MS.gene79171.t1 MTR_3g101010 80.157 383 69 3 66 443 9 389 0.0 592
MS.gene79171.t1 MTR_3g018740 70.604 381 106 3 65 441 8 386 0.0 524
MS.gene79171.t1 MTR_8g027395 67.254 397 122 4 49 443 7 397 0.0 523
MS.gene79171.t1 MTR_4g045707 67.692 390 119 4 57 443 3 388 0.0 513
MS.gene79171.t1 MTR_8g461160 66.071 392 126 2 57 441 1 392 1.03e-179 507
MS.gene79171.t1 MTR_8g027420 66.230 382 113 4 64 443 8 375 3.67e-175 495
MS.gene79171.t1 MTR_3g101180 64.824 398 125 5 57 441 3 398 2.64e-173 491
MS.gene79171.t1 MTR_3g048000 63.896 385 117 4 60 441 25 390 1.02e-169 482
MS.gene79171.t1 MTR_7g451890 62.338 385 138 2 66 443 18 402 3.04e-168 478
MS.gene79171.t1 MTR_4g088525 65.934 364 119 3 81 442 8 368 4.63e-167 474
MS.gene79171.t1 MTR_7g050810 62.435 386 136 3 66 443 20 404 1.54e-166 474
MS.gene79171.t1 MTR_7g047780 61.818 385 140 2 66 443 18 402 4.19e-165 471
MS.gene79171.t1 MTR_4g088535 65.013 383 111 6 58 438 5 366 4.56e-165 469
MS.gene79171.t1 MTR_2g046030 63.281 384 129 5 65 441 8 386 2.60e-163 466
MS.gene79171.t1 MTR_7g050750 61.299 385 142 2 66 443 12 396 6.55e-163 465
MS.gene79171.t1 MTR_2g045980 63.446 383 128 5 66 441 9 386 9.42e-163 464
MS.gene79171.t1 MTR_3g101130 60.622 386 145 3 62 443 7 389 1.33e-160 459
MS.gene79171.t1 MTR_3g015620 62.402 383 113 5 66 441 20 378 3.18e-152 437
MS.gene79171.t1 MTR_3g100995 75.591 254 60 1 192 443 11 264 8.74e-140 401
MS.gene79171.t1 MTR_3g102920 58.575 379 114 5 70 441 66 408 2.97e-138 402
MS.gene79171.t1 MTR_3g101200 55.285 369 137 4 78 441 45 390 3.45e-127 374
MS.gene79171.t1 MTR_3g101190 54.918 366 99 5 83 443 8 312 1.51e-125 367
MS.gene79171.t1 MTR_3g018747 69.498 259 60 3 188 441 9 253 4.32e-121 353
MS.gene79171.t1 MTR_3g100010 57.764 322 88 2 85 373 38 344 2.28e-115 342
MS.gene79171.t1 MTR_7g050830 55.016 309 108 2 68 356 22 319 1.59e-111 331
MS.gene79171.t1 MTR_3g015760 60.870 276 97 4 173 441 8 279 3.49e-100 301
MS.gene79171.t1 MTR_3g111160 68.421 209 60 3 240 443 13 220 9.66e-89 269
MS.gene79171.t1 MTR_3g100520 61.644 219 70 3 229 443 1 209 2.57e-87 265
MS.gene79171.t1 MTR_3g114310 42.569 397 204 11 64 443 21 410 1.70e-86 270
MS.gene79171.t1 MTR_3g101110 60.251 239 60 4 188 417 68 280 1.33e-85 263
MS.gene79171.t1 MTR_3g099970 66.667 195 48 2 188 381 20 198 5.65e-84 256
MS.gene79171.t1 MTR_2g046410 64.356 202 63 4 248 441 147 347 4.02e-79 249
MS.gene79171.t1 MTR_3g101020 66.848 184 35 2 262 443 1 160 3.43e-77 237
MS.gene79171.t1 MTR_3g111150 58.192 177 48 2 66 242 3 153 1.56e-61 197
MS.gene79171.t1 MTR_3g101150 61.783 157 51 2 294 441 1 157 5.57e-59 191
MS.gene79171.t1 MTR_3g102870 59.868 152 59 1 251 400 1 152 4.30e-56 184
MS.gene79171.t1 MTR_3g100990 58.108 148 59 2 66 213 9 153 6.48e-44 160
MS.gene79171.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 2.01e-24 97.1
MS.gene79171.t1 MTR_6g046890 64.474 76 24 1 80 155 15 87 6.17e-20 86.3
MS.gene79171.t1 MTR_3g101140 61.538 65 21 1 383 443 52 116 2.64e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79171.t1 AT1G47710 52.099 405 182 6 44 441 18 417 6.76e-143 415
MS.gene79171.t1 AT1G47710 52.806 392 174 5 57 441 3 390 8.22e-143 414
MS.gene79171.t1 AT3G45220 48.205 390 179 7 66 440 9 390 1.06e-121 360
MS.gene79171.t1 AT2G25240 47.769 381 186 6 66 440 9 382 2.23e-117 348
MS.gene79171.t1 AT2G26390 46.615 384 190 5 66 440 9 386 2.86e-114 341
MS.gene79171.t1 AT1G62170 42.896 366 181 4 85 442 88 433 2.73e-97 299
MS.gene79171.t1 AT1G64030 41.732 381 198 6 66 440 9 371 6.60e-95 291
MS.gene79171.t1 AT2G14540 41.316 380 199 5 66 440 37 397 5.53e-93 287
MS.gene79171.t1 AT2G35580 42.473 372 184 8 81 440 18 371 3.54e-91 281
MS.gene79171.t1 AT1G62170 39.348 399 181 5 85 442 88 466 2.31e-90 282
MS.gene79171.t1 AT1G64010 46.729 214 93 4 229 440 1 195 5.41e-60 194
MS.gene79171.t1 AT1G64010 46.734 199 85 4 244 440 2 181 6.07e-54 178
MS.gene79171.t1 AT1G62160 40.860 186 87 5 262 442 53 220 5.77e-36 132
MS.gene79171.t1 AT1G63280 52.174 115 51 2 188 300 8 120 3.34e-32 119
MS.gene79171.t1 AT1G51330 49.550 111 53 2 187 294 30 140 1.23e-23 98.2
MS.gene79171.t1 AT1G64020 32.432 111 72 3 70 179 13 121 3.47e-12 63.5

Find 104 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTTTCGTCGATGGTTTA+TGG 0.158405 7.2:-69138573 MS.gene79171:CDS
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-69138202 MS.gene79171:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-69138303 MS.gene79171:CDS
TTATCTTCACCTTGCTTATA+AGG 0.268250 7.2:+69138034 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+69138783 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:-69137798 MS.gene79171:CDS
CGCATCTGATGCAGTCAGTA+TGG 0.276049 7.2:-69137684 MS.gene79171:CDS
ATCTTTCGTCGATGGTTTAT+GGG 0.279350 7.2:-69138572 MS.gene79171:CDS
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:+69138906 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-69137872 MS.gene79171:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:-69137572 MS.gene79171:CDS
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:+69138660 None:intergenic
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+69137873 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.324647 7.2:-69137963 MS.gene79171:CDS
GGCTTCCGAATCTGAGTTAC+TGG 0.338294 7.2:-69137942 MS.gene79171:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+69138300 None:intergenic
TTTCTTCCAAATGCAAAAGA+TGG 0.344851 7.2:-69137989 MS.gene79171:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-69137898 MS.gene79171:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+69137872 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+69138798 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.384988 7.2:+69137703 None:intergenic
ATTCAAAAGGTGAAAATCAT+AGG 0.391490 7.2:+69138141 None:intergenic
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:-69137596 MS.gene79171:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+69138540 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+69138539 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-69138776 MS.gene79171:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+69138526 None:intergenic
ATTAAAGAACTTCTTCCTCT+AGG 0.427888 7.2:-69138256 MS.gene79171:CDS
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:-69138125 MS.gene79171:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:+69138128 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-69137591 MS.gene79171:CDS
TCTCTAATCATAAACAAGAA+AGG 0.443816 7.2:+69137626 None:intergenic
TTAAAGAACTTCTTCCTCTA+GGG 0.444956 7.2:-69138255 MS.gene79171:CDS
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 7.2:-69137915 MS.gene79171:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+69138893 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-69137728 MS.gene79171:CDS
CTCTAATCATAAACAAGAAA+GGG 0.468439 7.2:+69137627 None:intergenic
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:-69138718 MS.gene79171:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-69138535 MS.gene79171:CDS
GTGTTCCAGTAACTCAGATT+CGG 0.474362 7.2:+69137937 None:intergenic
ATGATTAGAGAAGAATTGAC+TGG 0.486911 7.2:-69137614 MS.gene79171:CDS
TTCTTCCAAATGCAAAAGAT+GGG 0.486946 7.2:-69137988 MS.gene79171:CDS
CCTCATCTATCTTTCGTCGA+TGG 0.489339 7.2:-69138580 MS.gene79171:CDS
GCCAGCTTCTCAAGCAAAGT+TGG 0.489801 7.2:+69137962 None:intergenic
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+69138592 None:intergenic
GTGCTAAGCATCATCGCTGC+TGG 0.494658 7.2:-69138727 MS.gene79171:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+69138694 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-69138302 MS.gene79171:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:+69138665 None:intergenic
CTTCACCTTGCTTATAAGGA+AGG 0.497179 7.2:+69138038 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:+69138916 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:-69137571 MS.gene79171:CDS
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+69138702 None:intergenic
GGAAACGTTGCTATGGTTGT+TGG 0.515044 7.2:+69138831 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+69138693 None:intergenic
GTTGCTATGGTTGTTGGCGA+GGG 0.518466 7.2:+69138837 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+69138809 None:intergenic
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:+69138745 None:intergenic
CTTGGCCTTCCTTATAAGCA+AGG 0.532934 7.2:-69138043 MS.gene79171:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:-69138719 MS.gene79171:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-69138195 MS.gene79171:CDS
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:+69138668 None:intergenic
CGTTGCTATGGTTGTTGGCG+AGG 0.535742 7.2:+69138836 None:intergenic
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:+69138630 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:+69138636 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.542423 7.2:-69137839 MS.gene79171:CDS
GCTATGGTTGTTGGCGAGGG+AGG 0.543469 7.2:+69138840 None:intergenic
GAAGAAGCAGAGAACAACTT+TGG 0.549721 7.2:+69138990 None:intergenic
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-69138603 MS.gene79171:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-69138607 MS.gene79171:CDS
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:+69137908 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.564663 7.2:+69137656 None:intergenic
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+69138882 None:intergenic
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:-69137908 MS.gene79171:CDS
TTTCGTCGATGGTTTATGGG+TGG 0.570484 7.2:-69138569 MS.gene79171:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-69138479 MS.gene79171:intron
GTCTCCGTCATTCTACAAAA+CGG 0.572969 7.2:-69138619 MS.gene79171:CDS
GCATCTGATGCAGTCAGTAT+GGG 0.576573 7.2:-69137683 MS.gene79171:CDS
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+69138695 None:intergenic
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:+69137806 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:+69137560 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-69138604 MS.gene79171:CDS
TTTGTAGAATGACGGAGACG+AGG 0.590002 7.2:+69138623 None:intergenic
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+69138810 None:intergenic
GCAGAGAACAACTTTGGCGA+TGG 0.601250 7.2:+69138996 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:+69138651 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-69137846 MS.gene79171:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+69138591 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+69138824 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 7.2:-69138251 MS.gene79171:CDS
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-69138974 MS.gene79171:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+69138883 None:intergenic
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-69138283 MS.gene79171:CDS
ACTGACTGCATCAGATGCGG+TGG 0.645350 7.2:+69137688 None:intergenic
TGGCGAGGGAGGATTCTGAT+CGG 0.645678 7.2:+69138851 None:intergenic
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+69138804 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:-69138234 MS.gene79171:CDS
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:+69138654 None:intergenic
CGAGGGAGGATTCTGATCGG+AGG 0.668188 7.2:+69138854 None:intergenic
CATACTGACTGCATCAGATG+CGG 0.683885 7.2:+69137685 None:intergenic
TATGCTGAAGGAGCTAGGCG+TGG 0.693931 7.2:-69137834 MS.gene79171:CDS
CCATCGACGAAAGATAGATG+AGG 0.702172 7.2:+69138580 None:intergenic
AACTCGACTAGACTTTGTAG+CGG 0.708512 7.2:-69137654 MS.gene79171:CDS
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:+69138241 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACAAAAATTTAACAAAATC+AGG + chr7.2:69138184-69138203 None:intergenic 15.0%
!!! ATTGATTTTAAGTTTTGATA+TGG - chr7.2:69138245-69138264 MS.gene79171:CDS 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:69138719-69138738 None:intergenic 20.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:69137813-69137832 MS.gene79171:CDS 25.0%
! ATTCAAAAGGTGAAAATCAT+AGG + chr7.2:69138451-69138470 None:intergenic 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:69138717-69138736 MS.gene79171:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:69138720-69138739 None:intergenic 25.0%
! CTCTAATCATAAACAAGAAA+GGG + chr7.2:69138965-69138984 None:intergenic 25.0%
! TCTCTAATCATAAACAAGAA+AGG + chr7.2:69138966-69138985 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:69138861-69138880 MS.gene79171:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+AGG + chr7.2:69138153-69138172 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG + chr7.2:69138152-69138171 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG - chr7.2:69138450-69138469 MS.gene79171:intron 25.0%
!!! AAGTTTTGATATGGTTTGAA+AGG - chr7.2:69138254-69138273 MS.gene79171:CDS 25.0%
!!! GAATGATAATTTTGATGCTT+CGG - chr7.2:69138416-69138435 MS.gene79171:intron 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:69138833-69138852 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:69138528-69138547 MS.gene79171:CDS 25.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:69137676-69137695 None:intergenic 30.0%
ATGATTAGAGAAGAATTGAC+TGG - chr7.2:69138975-69138994 MS.gene79171:CDS 30.0%
ATTAAAGAACTTCTTCCTCT+AGG - chr7.2:69138333-69138352 MS.gene79171:intron 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:69137809-69137828 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:69138287-69138306 MS.gene79171:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:69138464-69138483 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:69138286-69138305 MS.gene79171:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG - chr7.2:69138334-69138353 MS.gene79171:intron 30.0%
TTATCTTCACCTTGCTTATA+AGG + chr7.2:69138558-69138577 None:intergenic 30.0%
TTCTTCCAAATGCAAAAGAT+GGG - chr7.2:69138601-69138620 MS.gene79171:CDS 30.0%
TTTCTTCCAAATGCAAAAGA+TGG - chr7.2:69138600-69138619 MS.gene79171:CDS 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:69138464-69138483 MS.gene79171:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:69137654-69137673 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG + chr7.2:69138151-69138170 None:intergenic 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:69137794-69137813 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG + chr7.2:69137686-69137705 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:69138998-69139017 MS.gene79171:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG - chr7.2:69138993-69139012 MS.gene79171:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:69138292-69138311 None:intergenic 35.0%
ATCTTTCGTCGATGGTTTAT+GGG - chr7.2:69138017-69138036 MS.gene79171:CDS 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:69138791-69138810 MS.gene79171:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:69138052-69138071 None:intergenic 35.0%
TATCTTTCGTCGATGGTTTA+TGG - chr7.2:69138016-69138035 MS.gene79171:CDS 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:69138054-69138073 MS.gene79171:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:69138743-69138762 MS.gene79171:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:69138053-69138072 None:intergenic 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:69137661-69137680 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:69138066-69138085 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:69137898-69137917 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG + chr7.2:69138793-69138812 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:69138110-69138129 MS.gene79171:CDS 35.0%
AACTCGACTAGACTTTGTAG+CGG - chr7.2:69138935-69138954 MS.gene79171:CDS 40.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:69138691-69138710 MS.gene79171:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:69137709-69137728 None:intergenic 40.0%
AGCACAACTTGTAGTGAAAG+TGG + chr7.2:69137847-69137866 None:intergenic 40.0%
CAAGCTTCCTCTTGATAAAG+TGG - chr7.2:69138674-69138693 MS.gene79171:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG + chr7.2:69138684-69138703 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG - chr7.2:69138681-69138700 MS.gene79171:CDS 40.0%
CTTCACCTTGCTTATAAGGA+AGG + chr7.2:69138554-69138573 None:intergenic 40.0%
GAAGAAGCAGAGAACAACTT+TGG + chr7.2:69137602-69137621 None:intergenic 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:69138387-69138406 MS.gene79171:intron 40.0%
GTCTCCGTCATTCTACAAAA+CGG - chr7.2:69137970-69137989 MS.gene79171:CDS 40.0%
GTGTTCCAGTAACTCAGATT+CGG + chr7.2:69138655-69138674 None:intergenic 40.0%
! AGCACCGTTTTGTAGAATGA+CGG + chr7.2:69137977-69137996 None:intergenic 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:69137899-69137918 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG - chr7.2:69138777-69138796 MS.gene79171:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:69137897-69137916 None:intergenic 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG - chr7.2:69138774-69138793 MS.gene79171:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:69137783-69137802 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:69137782-69137801 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:69138012-69138031 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:69138009-69138028 MS.gene79171:CDS 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:69137710-69137729 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:69137699-69137718 None:intergenic 45.0%
GCATCTGATGCAGTCAGTAT+GGG - chr7.2:69138906-69138925 MS.gene79171:CDS 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:69138936-69138955 None:intergenic 45.0%
GGAAACGTTGCTATGGTTGT+TGG + chr7.2:69137761-69137780 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:69137788-69137807 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG + chr7.2:69138786-69138805 None:intergenic 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:69138750-69138769 MS.gene79171:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:69138306-69138325 MS.gene79171:CDS 45.0%
TTTCGTCGATGGTTTATGGG+TGG - chr7.2:69138020-69138039 MS.gene79171:CDS 45.0%
! CATACTGACTGCATCAGATG+CGG + chr7.2:69138907-69138926 None:intergenic 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:69138394-69138413 MS.gene79171:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:69138546-69138565 MS.gene79171:CDS 45.0%
! GTTGATCGGTGGATTTGGAT+TGG + chr7.2:69137927-69137946 None:intergenic 45.0%
! TTTGTAGAATGACGGAGACG+AGG + chr7.2:69137969-69137988 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG - chr7.2:69138338-69138357 MS.gene79171:intron 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG + chr7.2:69137932-69137951 None:intergenic 45.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr7.2:69139018-69139037 MS.gene79171:CDS 50.0%
CGCATCTGATGCAGTCAGTA+TGG - chr7.2:69138905-69138924 MS.gene79171:CDS 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:69137615-69137634 MS.gene79171:CDS 50.0%
GCAGAGAACAACTTTGGCGA+TGG + chr7.2:69137596-69137615 None:intergenic 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:69138626-69138645 MS.gene79171:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:69138630-69138649 None:intergenic 50.0%
GGCTTCCGAATCTGAGTTAC+TGG - chr7.2:69138647-69138666 MS.gene79171:CDS 50.0%
GGTCGGTCGACAACTTAACT+CGG - chr7.2:69138355-69138374 MS.gene79171:intron 50.0%
GTTGCTATGGTTGTTGGCGA+GGG + chr7.2:69137755-69137774 None:intergenic 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:69137768-69137787 None:intergenic 50.0%
! AATGACGGAGACGAGGATAG+AGG + chr7.2:69137962-69137981 None:intergenic 50.0%
! GATCGGTGGATTTGGATTGG+AGG + chr7.2:69137924-69137943 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG + chr7.2:69138609-69138628 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG + chr7.2:69137938-69137957 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:69137941-69137960 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG + chr7.2:69138351-69138370 None:intergenic 55.0%
ACTGACTGCATCAGATGCGG+TGG + chr7.2:69138904-69138923 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr7.2:69139017-69139036 MS.gene79171:CDS 55.0%
CGTTGCTATGGTTGTTGGCG+AGG + chr7.2:69137756-69137775 None:intergenic 55.0%
GTGCTAAGCATCATCGCTGC+TGG - chr7.2:69137862-69137881 MS.gene79171:CDS 55.0%
TATGCTGAAGGAGCTAGGCG+TGG - chr7.2:69138755-69138774 MS.gene79171:CDS 55.0%
TGGCGAGGGAGGATTCTGAT+CGG + chr7.2:69137741-69137760 None:intergenic 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:69137890-69137909 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:69138001-69138020 None:intergenic 60.0%
CGAGGGAGGATTCTGATCGG+AGG + chr7.2:69137738-69137757 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:69137982-69138001 MS.gene79171:CDS 60.0%
GCTATGGTTGTTGGCGAGGG+AGG + chr7.2:69137752-69137771 None:intergenic 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:69137956-69137975 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:69138889-69138908 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:69137871-69137890 MS.gene79171:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:69137986-69138005 MS.gene79171:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:69137985-69138004 MS.gene79171:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:69138000-69138019 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:69137870-69137889 MS.gene79171:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69137568 69139043 69137568 ID=MS.gene79171
chr7.2 mRNA 69137568 69139043 69137568 ID=MS.gene79171.t1;Parent=MS.gene79171
chr7.2 exon 69138480 69139043 69138480 ID=MS.gene79171.t1.exon1;Parent=MS.gene79171.t1
chr7.2 CDS 69138480 69139043 69138480 ID=cds.MS.gene79171.t1;Parent=MS.gene79171.t1
chr7.2 exon 69137568 69138335 69137568 ID=MS.gene79171.t1.exon2;Parent=MS.gene79171.t1
chr7.2 CDS 69137568 69138335 69137568 ID=cds.MS.gene79171.t1;Parent=MS.gene79171.t1
Gene Sequence

>MS.gene79171

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAAAGTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTCCCTCGCCAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTTTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAGTTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGATTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAATCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGTGAAGATAAGCGTCAATTTACAATGTACTTTTTTCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGGAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGCGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTGATGCAGTCAGTATGGGTTTTCCAACTCGACTAGACTTTGTAGCGGATCACCCTTTCTTGTTTATGATTAGAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene79171.t1

MRFSRKTIAIAKVVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESSLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVDGLWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDFHLLNGNSVKVDFMTSEKNQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLASESELLEHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASDAVSMGFPTRLDFVADHPFLFMIREELTGTIIFVGQVLNPLAG