Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79241.t1 | XP_003602005.1 | 99.3 | 152 | 1 | 0 | 1 | 152 | 1 | 152 | 1.20E-70 | 275.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79241.t1 | O65657 | 65.8 | 158 | 48 | 3 | 1 | 152 | 1 | 158 | 9.8e-53 | 207.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79241.t1 | G7J4D3 | 99.3 | 152 | 1 | 0 | 1 | 152 | 1 | 152 | 8.7e-71 | 275.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052234 | MS.gene79241 | 0.975612 | 2.84E-140 | -1.69E-46 |
| MS.gene053144 | MS.gene79241 | 0.80769 | 4.47E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene79241 | 0.801512 | 8.70E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79241.t1 | MTR_3g087770 | 99.342 | 152 | 1 | 0 | 1 | 152 | 1 | 152 | 2.94e-112 | 315 |
| MS.gene79241.t1 | MTR_8g091420 | 81.935 | 155 | 23 | 3 | 1 | 152 | 1 | 153 | 1.30e-79 | 232 |
| MS.gene79241.t1 | MTR_1g030630 | 56.376 | 149 | 61 | 3 | 5 | 152 | 2 | 147 | 6.03e-56 | 172 |
| MS.gene79241.t1 | MTR_3g073670 | 59.091 | 154 | 56 | 3 | 1 | 152 | 1 | 149 | 1.57e-55 | 171 |
| MS.gene79241.t1 | MTR_5g022620 | 55.769 | 156 | 61 | 4 | 5 | 152 | 2 | 157 | 1.94e-53 | 166 |
| MS.gene79241.t1 | MTR_3g117890 | 53.750 | 160 | 57 | 5 | 5 | 152 | 2 | 156 | 2.32e-52 | 163 |
| MS.gene79241.t1 | MTR_4g073040 | 54.194 | 155 | 64 | 4 | 5 | 152 | 2 | 156 | 7.15e-52 | 162 |
| MS.gene79241.t1 | MTR_6g003990 | 50.649 | 154 | 70 | 3 | 5 | 152 | 2 | 155 | 2.63e-51 | 160 |
| MS.gene79241.t1 | MTR_5g025150 | 52.027 | 148 | 67 | 1 | 5 | 152 | 2 | 145 | 6.33e-51 | 159 |
| MS.gene79241.t1 | MTR_7g083060 | 57.364 | 129 | 53 | 2 | 25 | 152 | 19 | 146 | 2.42e-47 | 150 |
| MS.gene79241.t1 | MTR_6g003990 | 53.390 | 118 | 52 | 2 | 38 | 152 | 1 | 118 | 3.17e-42 | 136 |
| MS.gene79241.t1 | MTR_5g055020 | 47.967 | 123 | 64 | 0 | 30 | 152 | 25 | 147 | 2.47e-40 | 132 |
| MS.gene79241.t1 | MTR_6g026890 | 39.456 | 147 | 77 | 4 | 17 | 152 | 3 | 148 | 2.77e-28 | 102 |
| MS.gene79241.t1 | MTR_1g078090 | 41.045 | 134 | 69 | 3 | 29 | 152 | 52 | 185 | 1.23e-27 | 101 |
| MS.gene79241.t1 | MTR_2g091235 | 35.135 | 148 | 66 | 5 | 29 | 152 | 1 | 142 | 6.19e-22 | 85.9 |
| MS.gene79241.t1 | MTR_6g045203 | 39.706 | 136 | 67 | 4 | 32 | 152 | 5 | 140 | 3.75e-18 | 75.9 |
| MS.gene79241.t1 | MTR_1g082650 | 53.731 | 67 | 31 | 0 | 28 | 94 | 8 | 74 | 4.78e-15 | 71.6 |
| MS.gene79241.t1 | MTR_1g107565 | 50.746 | 67 | 33 | 0 | 28 | 94 | 11 | 77 | 7.88e-15 | 70.5 |
| MS.gene79241.t1 | MTR_2g022250 | 47.761 | 67 | 35 | 0 | 28 | 94 | 8 | 74 | 7.29e-14 | 68.2 |
| MS.gene79241.t1 | MTR_1g092670 | 49.231 | 65 | 33 | 0 | 30 | 94 | 4 | 68 | 1.06e-13 | 62.8 |
| MS.gene79241.t1 | MTR_7g013660 | 47.692 | 65 | 34 | 0 | 30 | 94 | 4 | 68 | 1.22e-13 | 63.9 |
| MS.gene79241.t1 | MTR_7g108560 | 49.231 | 65 | 33 | 0 | 30 | 94 | 22 | 86 | 1.32e-13 | 66.6 |
| MS.gene79241.t1 | MTR_4g094238 | 38.824 | 85 | 49 | 2 | 29 | 113 | 1 | 82 | 1.43e-13 | 62.8 |
| MS.gene79241.t1 | MTR_4g117140 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 3.02e-13 | 66.2 |
| MS.gene79241.t1 | MTR_4g117220 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 3.28e-13 | 66.2 |
| MS.gene79241.t1 | MTR_7g113110 | 48.387 | 62 | 32 | 0 | 34 | 95 | 37 | 98 | 1.10e-12 | 64.3 |
| MS.gene79241.t1 | MTR_3g067750 | 46.875 | 64 | 34 | 0 | 30 | 93 | 12 | 75 | 5.09e-12 | 61.2 |
| MS.gene79241.t1 | MTR_4g119820 | 46.970 | 66 | 35 | 0 | 30 | 95 | 74 | 139 | 1.42e-11 | 61.2 |
| MS.gene79241.t1 | MTR_1g083310 | 44.776 | 67 | 36 | 1 | 30 | 95 | 15 | 81 | 2.83e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79241.t1 | AT4G39700 | 70.886 | 158 | 40 | 3 | 1 | 152 | 1 | 158 | 3.63e-72 | 214 |
| MS.gene79241.t1 | AT1G22990 | 56.579 | 152 | 61 | 3 | 5 | 152 | 2 | 152 | 8.07e-58 | 177 |
| MS.gene79241.t1 | AT1G71050 | 59.355 | 155 | 57 | 3 | 1 | 152 | 1 | 152 | 7.31e-56 | 172 |
| MS.gene79241.t1 | AT1G22990 | 55.034 | 149 | 63 | 3 | 5 | 152 | 2 | 147 | 7.24e-55 | 169 |
| MS.gene79241.t1 | AT4G38580 | 54.902 | 153 | 63 | 3 | 5 | 152 | 2 | 153 | 1.23e-54 | 169 |
| MS.gene79241.t1 | AT4G38580 | 54.902 | 153 | 63 | 3 | 5 | 152 | 2 | 153 | 1.23e-54 | 169 |
| MS.gene79241.t1 | AT4G08570 | 55.844 | 154 | 62 | 3 | 1 | 152 | 1 | 150 | 4.89e-54 | 167 |
| MS.gene79241.t1 | AT5G17450 | 50.667 | 150 | 70 | 4 | 5 | 152 | 2 | 149 | 5.73e-46 | 147 |
| MS.gene79241.t1 | AT5G66110 | 51.007 | 149 | 63 | 4 | 10 | 152 | 3 | 147 | 8.82e-45 | 144 |
| MS.gene79241.t1 | AT5G66110 | 51.007 | 149 | 63 | 4 | 10 | 152 | 3 | 147 | 8.82e-45 | 144 |
| MS.gene79241.t1 | AT4G35060 | 47.403 | 154 | 73 | 4 | 5 | 152 | 2 | 153 | 2.01e-43 | 140 |
| MS.gene79241.t1 | AT5G66110 | 52.893 | 121 | 51 | 3 | 38 | 152 | 1 | 121 | 5.30e-38 | 126 |
| MS.gene79241.t1 | AT5G17450 | 55.556 | 99 | 41 | 3 | 56 | 152 | 8 | 105 | 3.30e-31 | 108 |
| MS.gene79241.t1 | AT1G06330 | 38.961 | 154 | 60 | 5 | 29 | 152 | 1 | 150 | 1.29e-26 | 98.2 |
| MS.gene79241.t1 | AT3G56891 | 39.216 | 153 | 63 | 6 | 29 | 152 | 15 | 166 | 6.23e-25 | 94.4 |
| MS.gene79241.t1 | AT2G18196 | 36.301 | 146 | 81 | 5 | 19 | 152 | 33 | 178 | 2.68e-24 | 92.8 |
| MS.gene79241.t1 | AT4G10465 | 38.849 | 139 | 75 | 3 | 24 | 152 | 45 | 183 | 1.85e-23 | 90.9 |
| MS.gene79241.t1 | AT3G56891 | 38.194 | 144 | 59 | 6 | 38 | 152 | 1 | 143 | 2.47e-22 | 87.0 |
| MS.gene79241.t1 | AT1G29100 | 37.584 | 149 | 61 | 4 | 31 | 152 | 4 | 147 | 3.04e-21 | 84.3 |
| MS.gene79241.t1 | AT1G29100 | 36.986 | 146 | 60 | 4 | 34 | 152 | 1 | 141 | 5.50e-20 | 80.9 |
| MS.gene79241.t1 | AT2G18196 | 35.200 | 125 | 71 | 4 | 38 | 152 | 1 | 125 | 4.19e-19 | 78.2 |
| MS.gene79241.t1 | AT3G48970 | 38.686 | 137 | 69 | 4 | 31 | 152 | 4 | 140 | 7.49e-15 | 67.4 |
| MS.gene79241.t1 | AT3G48970 | 38.686 | 137 | 69 | 4 | 31 | 152 | 2 | 138 | 8.96e-15 | 67.4 |
| MS.gene79241.t1 | AT3G48970 | 38.686 | 137 | 69 | 4 | 31 | 152 | 2 | 138 | 8.96e-15 | 67.4 |
| MS.gene79241.t1 | AT1G66240 | 44.444 | 72 | 40 | 0 | 23 | 94 | 26 | 97 | 7.42e-14 | 63.9 |
| MS.gene79241.t1 | AT5G27690 | 48.387 | 62 | 32 | 0 | 34 | 95 | 34 | 95 | 1.47e-13 | 67.0 |
| MS.gene79241.t1 | AT3G06130 | 48.485 | 66 | 34 | 0 | 29 | 94 | 9 | 74 | 2.06e-13 | 66.6 |
| MS.gene79241.t1 | AT3G56240 | 50.000 | 66 | 33 | 0 | 30 | 95 | 3 | 68 | 2.82e-13 | 62.8 |
| MS.gene79241.t1 | AT3G56240 | 50.000 | 66 | 33 | 0 | 30 | 95 | 3 | 68 | 2.82e-13 | 62.8 |
| MS.gene79241.t1 | AT3G06130 | 47.761 | 67 | 35 | 0 | 28 | 94 | 8 | 74 | 3.89e-13 | 65.9 |
| MS.gene79241.t1 | AT5G19090 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 3.56e-12 | 63.2 |
| MS.gene79241.t1 | AT5G19090 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 3.56e-12 | 63.2 |
| MS.gene79241.t1 | AT5G19090 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 3.56e-12 | 63.2 |
| MS.gene79241.t1 | AT5G19090 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 4.52e-12 | 62.8 |
| MS.gene79241.t1 | AT5G19090 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 4.52e-12 | 62.8 |
| MS.gene79241.t1 | AT1G56210 | 49.231 | 65 | 33 | 0 | 34 | 98 | 44 | 108 | 5.48e-12 | 62.4 |
| MS.gene79241.t1 | AT1G23000 | 42.857 | 70 | 40 | 0 | 29 | 98 | 72 | 141 | 1.79e-11 | 61.2 |
| MS.gene79241.t1 | AT1G23000 | 42.857 | 70 | 40 | 0 | 29 | 98 | 12 | 81 | 1.97e-11 | 60.8 |
| MS.gene79241.t1 | AT5G37860 | 40.845 | 71 | 42 | 0 | 29 | 99 | 9 | 79 | 3.68e-11 | 59.7 |
Find 41 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTATCATCATCTACATAA+TGG | 0.292404 | 3.1:+70555732 | None:intergenic |
| TACATAATGGAGCAGGCATT+TGG | 0.304332 | 3.1:+70555745 | None:intergenic |
| AGAGTACTTATCTGATCTAA+TGG | 0.306737 | 3.1:-70556441 | MS.gene79241:CDS |
| TAAAATCAGTGGAGATAAAC+AGG | 0.372946 | 3.1:-70556011 | MS.gene79241:CDS |
| TTGCGATGGTTGCGAACTTA+AGG | 0.383976 | 3.1:-70556345 | MS.gene79241:CDS |
| ACCATGTTGTATGGCACATA+AGG | 0.433890 | 3.1:+70555898 | None:intergenic |
| AGCAAAGTCAACAGGAAAGA+AGG | 0.439458 | 3.1:-70555932 | MS.gene79241:CDS |
| CAGGAAAGAAGGCAGAGATT+TGG | 0.440709 | 3.1:-70555921 | MS.gene79241:CDS |
| ACATAATGGAGCAGGCATTT+GGG | 0.448683 | 3.1:+70555746 | None:intergenic |
| GGGGTATGTAGAGGCAAATA+AGG | 0.452605 | 3.1:-70555965 | MS.gene79241:CDS |
| TCCTGGATATGTAAGGAGAT+TGG | 0.456785 | 3.1:-70555833 | MS.gene79241:CDS |
| TCCAATCTCCTTACATATCC+AGG | 0.463407 | 3.1:+70555832 | None:intergenic |
| CTAAAGAAAGCAAAGTCAAC+AGG | 0.471841 | 3.1:-70555940 | MS.gene79241:CDS |
| GAGTACTTATCTGATCTAAT+GGG | 0.482086 | 3.1:-70556440 | MS.gene79241:CDS |
| AAAGCCCTCTCTTCAATGAA+TGG | 0.498175 | 3.1:-70556317 | MS.gene79241:intron |
| ATTACAGACCGTAGAGTTGA+AGG | 0.499504 | 3.1:-70556378 | MS.gene79241:CDS |
| TATGACAAGAAGGCTCCTCC+TGG | 0.508900 | 3.1:-70555850 | MS.gene79241:CDS |
| CGTAGAGTTGAAGGTGAGGA+TGG | 0.509056 | 3.1:-70556369 | MS.gene79241:CDS |
| CTTACCATTCATTGAAGAGA+GGG | 0.529075 | 3.1:+70556313 | None:intergenic |
| ATATACACAGAAATGGGAGT+TGG | 0.529253 | 3.1:-70556473 | None:intergenic |
| AGGCTCCTCCTGGATATGTA+AGG | 0.531905 | 3.1:-70555840 | MS.gene79241:CDS |
| GGAGCCTTCTTGTCATAAGA+AGG | 0.533318 | 3.1:+70555856 | None:intergenic |
| GGATGAGCCACCATGTTGTA+TGG | 0.533759 | 3.1:+70555889 | None:intergenic |
| TCATAAGAAGGAGCAGCGTA+TGG | 0.549598 | 3.1:+70555868 | None:intergenic |
| TACACAGAAATGGGAGTTGG+AGG | 0.552311 | 3.1:-70556470 | None:intergenic |
| CATCATCTACATAATGGAGC+AGG | 0.555456 | 3.1:+70555738 | None:intergenic |
| TGCTCCTTCTTATGACAAGA+AGG | 0.562724 | 3.1:-70555860 | MS.gene79241:CDS |
| GTAAGGAGATTGGAGACCAC+TGG | 0.572647 | 3.1:-70555823 | MS.gene79241:CDS |
| TTATCTGATCTAATGGGCAG+TGG | 0.573748 | 3.1:-70556434 | MS.gene79241:CDS |
| CATCCTCACCTTCAACTCTA+CGG | 0.585179 | 3.1:+70556370 | None:intergenic |
| GACAGTAACGGGGTATGTAG+AGG | 0.602619 | 3.1:-70555974 | MS.gene79241:CDS |
| ACTTACCATTCATTGAAGAG+AGG | 0.616934 | 3.1:+70556312 | None:intergenic |
| CATCACTAAACATGGTGGTG+AGG | 0.624282 | 3.1:+70555773 | None:intergenic |
| GCCTTATGTGCCATACAACA+TGG | 0.647674 | 3.1:-70555899 | MS.gene79241:CDS |
| ATATGCTCTAACAGTTCCAG+TGG | 0.649114 | 3.1:+70555807 | None:intergenic |
| AAGGTGAGGATGGATTGCGA+TGG | 0.658836 | 3.1:-70556359 | MS.gene79241:CDS |
| CTAAACATGGTGGTGAGGTG+TGG | 0.665051 | 3.1:+70555778 | None:intergenic |
| AGACCGTAGAGTTGAAGGTG+AGG | 0.688480 | 3.1:-70556373 | MS.gene79241:CDS |
| TGATGCAGGAGTAAAATCAG+TGG | 0.694945 | 3.1:-70556022 | MS.gene79241:intron |
| TTATGTGCCATACAACATGG+TGG | 0.751150 | 3.1:-70555896 | MS.gene79241:CDS |
| AATCTCCTTACATATCCAGG+AGG | 0.766746 | 3.1:+70555835 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGAAAGATAAATTAATAG+AGG | + | chr3.1:70555928-70555947 | None:intergenic | 20.0% |
| !! | GAGAAAGATAAATTAATAGA+GGG | + | chr3.1:70555927-70555946 | None:intergenic | 20.0% |
| ! | TCAAATTATAATTAGTGCGT+CGG | - | chr3.1:70556038-70556057 | MS.gene79241:intron | 25.0% |
| ACAACAAAAAGTGACAGTAA+CGG | - | chr3.1:70556219-70556238 | MS.gene79241:intron | 30.0% | |
| GAGTACTTATCTGATCTAAT+GGG | - | chr3.1:70555765-70555784 | MS.gene79241:CDS | 30.0% | |
| TAAAATCAGTGGAGATAAAC+AGG | - | chr3.1:70556194-70556213 | MS.gene79241:intron | 30.0% | |
| TATCTTTCTCTATATAGCAC+CGG | - | chr3.1:70555937-70555956 | MS.gene79241:CDS | 30.0% | |
| ! | AGAGTACTTATCTGATCTAA+TGG | - | chr3.1:70555764-70555783 | MS.gene79241:CDS | 30.0% |
| ! | TCTTCTTCTTGATTTTGTGA+TGG | + | chr3.1:70555803-70555822 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTGTGGTGATGC+AGG | - | chr3.1:70556169-70556188 | MS.gene79241:intron | 30.0% |
| AACAAAAAGTGACAGTAACG+GGG | - | chr3.1:70556221-70556240 | MS.gene79241:intron | 35.0% | |
| ACTTACCATTCATTGAAGAG+AGG | + | chr3.1:70555896-70555915 | None:intergenic | 35.0% | |
| CAACAAAAAGTGACAGTAAC+GGG | - | chr3.1:70556220-70556239 | MS.gene79241:intron | 35.0% | |
| CTAAAGAAAGCAAAGTCAAC+AGG | - | chr3.1:70556265-70556284 | MS.gene79241:intron | 35.0% | |
| CTTACCATTCATTGAAGAGA+GGG | + | chr3.1:70555895-70555914 | None:intergenic | 35.0% | |
| GCTTGCTTGCATTATATGTA+TGG | - | chr3.1:70556094-70556113 | MS.gene79241:intron | 35.0% | |
| ! | GTTTTCATCACTAAACATGG+TGG | + | chr3.1:70556440-70556459 | None:intergenic | 35.0% |
| ! | TCTTCTTGATTTTGTGATGG+TGG | + | chr3.1:70555800-70555819 | None:intergenic | 35.0% |
| ! | TGGGTTTTCATCACTAAACA+TGG | + | chr3.1:70556443-70556462 | None:intergenic | 35.0% |
| AAAGCCCTCTCTTCAATGAA+TGG | - | chr3.1:70555888-70555907 | MS.gene79241:CDS | 40.0% | |
| AATCTCCTTACATATCCAGG+AGG | + | chr3.1:70556373-70556392 | None:intergenic | 40.0% | |
| ACCATGTTGTATGGCACATA+AGG | + | chr3.1:70556310-70556329 | None:intergenic | 40.0% | |
| ACGTCATCAATATGAAGTGC+CGG | + | chr3.1:70555959-70555978 | None:intergenic | 40.0% | |
| AGCAAAGTCAACAGGAAAGA+AGG | - | chr3.1:70556273-70556292 | MS.gene79241:intron | 40.0% | |
| ATATGCTCTAACAGTTCCAG+TGG | + | chr3.1:70556401-70556420 | None:intergenic | 40.0% | |
| ATTACAGACCGTAGAGTTGA+AGG | - | chr3.1:70555827-70555846 | MS.gene79241:CDS | 40.0% | |
| TCCAATCTCCTTACATATCC+AGG | + | chr3.1:70556376-70556395 | None:intergenic | 40.0% | |
| TCCTGGATATGTAAGGAGAT+TGG | - | chr3.1:70556372-70556391 | MS.gene79241:CDS | 40.0% | |
| TGATGCAGGAGTAAAATCAG+TGG | - | chr3.1:70556183-70556202 | MS.gene79241:intron | 40.0% | |
| TGCTCCTTCTTATGACAAGA+AGG | - | chr3.1:70556345-70556364 | MS.gene79241:CDS | 40.0% | |
| TTATGTGCCATACAACATGG+TGG | - | chr3.1:70556309-70556328 | MS.gene79241:intron | 40.0% | |
| ! | ACATAATGGAGCAGGCATTT+GGG | + | chr3.1:70556462-70556481 | None:intergenic | 40.0% |
| ! | TACATAATGGAGCAGGCATT+TGG | + | chr3.1:70556463-70556482 | None:intergenic | 40.0% |
| ! | TTATCTGATCTAATGGGCAG+TGG | - | chr3.1:70555771-70555790 | MS.gene79241:CDS | 40.0% |
| CAGGAAAGAAGGCAGAGATT+TGG | - | chr3.1:70556284-70556303 | MS.gene79241:intron | 45.0% | |
| CATCCTCACCTTCAACTCTA+CGG | + | chr3.1:70555838-70555857 | None:intergenic | 45.0% | |
| GCCTTATGTGCCATACAACA+TGG | - | chr3.1:70556306-70556325 | MS.gene79241:intron | 45.0% | |
| GGAGCCTTCTTGTCATAAGA+AGG | + | chr3.1:70556352-70556371 | None:intergenic | 45.0% | |
| GGGGTATGTAGAGGCAAATA+AGG | - | chr3.1:70556240-70556259 | MS.gene79241:intron | 45.0% | |
| TCATAAGAAGGAGCAGCGTA+TGG | + | chr3.1:70556340-70556359 | None:intergenic | 45.0% | |
| TTGCGATGGTTGCGAACTTA+AGG | - | chr3.1:70555860-70555879 | MS.gene79241:CDS | 45.0% | |
| ! | CATCACTAAACATGGTGGTG+AGG | + | chr3.1:70556435-70556454 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTTTG+TGG | - | chr3.1:70556160-70556179 | MS.gene79241:intron | 5.0% |
| AGACCGTAGAGTTGAAGGTG+AGG | - | chr3.1:70555832-70555851 | MS.gene79241:CDS | 50.0% | |
| AGGCTCCTCCTGGATATGTA+AGG | - | chr3.1:70556365-70556384 | MS.gene79241:CDS | 50.0% | |
| CGTAGAGTTGAAGGTGAGGA+TGG | - | chr3.1:70555836-70555855 | MS.gene79241:CDS | 50.0% | |
| CGTCTGACATCACTGACACA+TGG | - | chr3.1:70555985-70556004 | MS.gene79241:CDS | 50.0% | |
| GGATGAGCCACCATGTTGTA+TGG | + | chr3.1:70556319-70556338 | None:intergenic | 50.0% | |
| GTAAGGAGATTGGAGACCAC+TGG | - | chr3.1:70556382-70556401 | MS.gene79241:CDS | 50.0% | |
| GTGTCAGTGATGTCAGACGT+TGG | + | chr3.1:70555984-70556003 | None:intergenic | 50.0% | |
| TATGACAAGAAGGCTCCTCC+TGG | - | chr3.1:70556355-70556374 | MS.gene79241:CDS | 50.0% | |
| ! | CTAAACATGGTGGTGAGGTG+TGG | + | chr3.1:70556430-70556449 | None:intergenic | 50.0% |
| ! | GACAGTAACGGGGTATGTAG+AGG | - | chr3.1:70556231-70556250 | MS.gene79241:intron | 50.0% |
| !! | AAGGTGAGGATGGATTGCGA+TGG | - | chr3.1:70555846-70555865 | MS.gene79241:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 70555744 | 70556483 | 70555744 | ID=MS.gene79241 |
| chr3.1 | mRNA | 70555744 | 70556483 | 70555744 | ID=MS.gene79241.t1;Parent=MS.gene79241 |
| chr3.1 | exon | 70556318 | 70556483 | 70556318 | ID=MS.gene79241.t1.exon1;Parent=MS.gene79241.t1 |
| chr3.1 | CDS | 70556318 | 70556483 | 70556318 | ID=cds.MS.gene79241.t1;Parent=MS.gene79241.t1 |
| chr3.1 | exon | 70555744 | 70556036 | 70555744 | ID=MS.gene79241.t1.exon2;Parent=MS.gene79241.t1 |
| chr3.1 | CDS | 70555744 | 70556036 | 70555744 | ID=cds.MS.gene79241.t1;Parent=MS.gene79241.t1 |
| Gene Sequence |
| Protein sequence |
