Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052234.t1 | XP_003602005.1 | 99.3 | 152 | 1 | 0 | 1 | 152 | 1 | 152 | 1.20E-70 | 275.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052234.t1 | O65657 | 65.8 | 158 | 48 | 3 | 1 | 152 | 1 | 158 | 9.8e-53 | 207.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052234.t1 | G7J4D3 | 99.3 | 152 | 1 | 0 | 1 | 152 | 1 | 152 | 8.7e-71 | 275.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052234 | MS.gene053144 | 0.803182 | 3.94E-49 | -1.69E-46 |
| MS.gene052234 | MS.gene054584 | 0.800999 | 1.11E-48 | -1.69E-46 |
| MS.gene052234 | MS.gene065979 | 0.821279 | 4.39E-53 | -1.69E-46 |
| MS.gene052234 | MS.gene25119 | 0.801612 | 8.30E-49 | -1.69E-46 |
| MS.gene052234 | MS.gene26380 | 0.819533 | 1.10E-52 | -1.69E-46 |
| MS.gene052234 | MS.gene26659 | 0.825829 | 3.79E-54 | -1.69E-46 |
| MS.gene052234 | MS.gene34286 | 0.814241 | 1.70E-51 | -1.69E-46 |
| MS.gene052234 | MS.gene36284 | 0.800615 | 1.33E-48 | -1.69E-46 |
| MS.gene052234 | MS.gene38303 | 0.810689 | 1.02E-50 | -1.69E-46 |
| MS.gene052234 | MS.gene62491 | 0.834775 | 2.47E-56 | -1.69E-46 |
| MS.gene052234 | MS.gene77149 | 0.801443 | 8.98E-49 | -1.69E-46 |
| MS.gene052234 | MS.gene79241 | 0.975612 | 2.84E-140 | -1.69E-46 |
| MS.gene052234 | MS.gene84454 | 0.810819 | 9.54E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052234.t1 | MTR_3g087770 | 99.342 | 152 | 1 | 0 | 1 | 152 | 1 | 152 | 2.94e-112 | 315 |
| MS.gene052234.t1 | MTR_8g091420 | 81.935 | 155 | 23 | 3 | 1 | 152 | 1 | 153 | 1.30e-79 | 232 |
| MS.gene052234.t1 | MTR_1g030630 | 56.376 | 149 | 61 | 3 | 5 | 152 | 2 | 147 | 6.03e-56 | 172 |
| MS.gene052234.t1 | MTR_3g073670 | 59.091 | 154 | 56 | 3 | 1 | 152 | 1 | 149 | 1.57e-55 | 171 |
| MS.gene052234.t1 | MTR_5g022620 | 55.769 | 156 | 61 | 4 | 5 | 152 | 2 | 157 | 1.94e-53 | 166 |
| MS.gene052234.t1 | MTR_3g117890 | 53.750 | 160 | 57 | 5 | 5 | 152 | 2 | 156 | 2.32e-52 | 163 |
| MS.gene052234.t1 | MTR_4g073040 | 54.194 | 155 | 64 | 4 | 5 | 152 | 2 | 156 | 7.15e-52 | 162 |
| MS.gene052234.t1 | MTR_6g003990 | 50.649 | 154 | 70 | 3 | 5 | 152 | 2 | 155 | 2.63e-51 | 160 |
| MS.gene052234.t1 | MTR_5g025150 | 52.027 | 148 | 67 | 1 | 5 | 152 | 2 | 145 | 6.33e-51 | 159 |
| MS.gene052234.t1 | MTR_7g083060 | 57.364 | 129 | 53 | 2 | 25 | 152 | 19 | 146 | 2.42e-47 | 150 |
| MS.gene052234.t1 | MTR_6g003990 | 53.390 | 118 | 52 | 2 | 38 | 152 | 1 | 118 | 3.17e-42 | 136 |
| MS.gene052234.t1 | MTR_5g055020 | 47.967 | 123 | 64 | 0 | 30 | 152 | 25 | 147 | 2.47e-40 | 132 |
| MS.gene052234.t1 | MTR_6g026890 | 39.456 | 147 | 77 | 4 | 17 | 152 | 3 | 148 | 2.77e-28 | 102 |
| MS.gene052234.t1 | MTR_1g078090 | 41.045 | 134 | 69 | 3 | 29 | 152 | 52 | 185 | 1.23e-27 | 101 |
| MS.gene052234.t1 | MTR_2g091235 | 35.135 | 148 | 66 | 5 | 29 | 152 | 1 | 142 | 6.19e-22 | 85.9 |
| MS.gene052234.t1 | MTR_6g045203 | 39.706 | 136 | 67 | 4 | 32 | 152 | 5 | 140 | 3.75e-18 | 75.9 |
| MS.gene052234.t1 | MTR_1g082650 | 53.731 | 67 | 31 | 0 | 28 | 94 | 8 | 74 | 4.78e-15 | 71.6 |
| MS.gene052234.t1 | MTR_1g107565 | 50.746 | 67 | 33 | 0 | 28 | 94 | 11 | 77 | 7.88e-15 | 70.5 |
| MS.gene052234.t1 | MTR_2g022250 | 47.761 | 67 | 35 | 0 | 28 | 94 | 8 | 74 | 7.29e-14 | 68.2 |
| MS.gene052234.t1 | MTR_1g092670 | 49.231 | 65 | 33 | 0 | 30 | 94 | 4 | 68 | 1.06e-13 | 62.8 |
| MS.gene052234.t1 | MTR_7g013660 | 47.692 | 65 | 34 | 0 | 30 | 94 | 4 | 68 | 1.22e-13 | 63.9 |
| MS.gene052234.t1 | MTR_7g108560 | 49.231 | 65 | 33 | 0 | 30 | 94 | 22 | 86 | 1.32e-13 | 66.6 |
| MS.gene052234.t1 | MTR_4g094238 | 38.824 | 85 | 49 | 2 | 29 | 113 | 1 | 82 | 1.43e-13 | 62.8 |
| MS.gene052234.t1 | MTR_4g117140 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 3.02e-13 | 66.2 |
| MS.gene052234.t1 | MTR_4g117220 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 3.28e-13 | 66.2 |
| MS.gene052234.t1 | MTR_7g113110 | 48.387 | 62 | 32 | 0 | 34 | 95 | 37 | 98 | 1.10e-12 | 64.3 |
| MS.gene052234.t1 | MTR_3g067750 | 46.875 | 64 | 34 | 0 | 30 | 93 | 12 | 75 | 5.09e-12 | 61.2 |
| MS.gene052234.t1 | MTR_4g119820 | 46.970 | 66 | 35 | 0 | 30 | 95 | 74 | 139 | 1.42e-11 | 61.2 |
| MS.gene052234.t1 | MTR_1g083310 | 44.776 | 67 | 36 | 1 | 30 | 95 | 15 | 81 | 2.83e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052234.t1 | AT4G39700 | 70.886 | 158 | 40 | 3 | 1 | 152 | 1 | 158 | 3.63e-72 | 214 |
| MS.gene052234.t1 | AT1G22990 | 56.579 | 152 | 61 | 3 | 5 | 152 | 2 | 152 | 8.07e-58 | 177 |
| MS.gene052234.t1 | AT1G71050 | 59.355 | 155 | 57 | 3 | 1 | 152 | 1 | 152 | 7.31e-56 | 172 |
| MS.gene052234.t1 | AT1G22990 | 55.034 | 149 | 63 | 3 | 5 | 152 | 2 | 147 | 7.24e-55 | 169 |
| MS.gene052234.t1 | AT4G38580 | 54.902 | 153 | 63 | 3 | 5 | 152 | 2 | 153 | 1.23e-54 | 169 |
| MS.gene052234.t1 | AT4G38580 | 54.902 | 153 | 63 | 3 | 5 | 152 | 2 | 153 | 1.23e-54 | 169 |
| MS.gene052234.t1 | AT4G08570 | 55.844 | 154 | 62 | 3 | 1 | 152 | 1 | 150 | 4.89e-54 | 167 |
| MS.gene052234.t1 | AT5G17450 | 50.667 | 150 | 70 | 4 | 5 | 152 | 2 | 149 | 5.73e-46 | 147 |
| MS.gene052234.t1 | AT5G66110 | 51.007 | 149 | 63 | 4 | 10 | 152 | 3 | 147 | 8.82e-45 | 144 |
| MS.gene052234.t1 | AT5G66110 | 51.007 | 149 | 63 | 4 | 10 | 152 | 3 | 147 | 8.82e-45 | 144 |
| MS.gene052234.t1 | AT4G35060 | 47.403 | 154 | 73 | 4 | 5 | 152 | 2 | 153 | 2.01e-43 | 140 |
| MS.gene052234.t1 | AT5G66110 | 52.893 | 121 | 51 | 3 | 38 | 152 | 1 | 121 | 5.30e-38 | 126 |
| MS.gene052234.t1 | AT5G17450 | 55.556 | 99 | 41 | 3 | 56 | 152 | 8 | 105 | 3.30e-31 | 108 |
| MS.gene052234.t1 | AT1G06330 | 38.961 | 154 | 60 | 5 | 29 | 152 | 1 | 150 | 1.29e-26 | 98.2 |
| MS.gene052234.t1 | AT3G56891 | 39.216 | 153 | 63 | 6 | 29 | 152 | 15 | 166 | 6.23e-25 | 94.4 |
| MS.gene052234.t1 | AT2G18196 | 36.301 | 146 | 81 | 5 | 19 | 152 | 33 | 178 | 2.68e-24 | 92.8 |
| MS.gene052234.t1 | AT4G10465 | 38.849 | 139 | 75 | 3 | 24 | 152 | 45 | 183 | 1.85e-23 | 90.9 |
| MS.gene052234.t1 | AT3G56891 | 38.194 | 144 | 59 | 6 | 38 | 152 | 1 | 143 | 2.47e-22 | 87.0 |
| MS.gene052234.t1 | AT1G29100 | 37.584 | 149 | 61 | 4 | 31 | 152 | 4 | 147 | 3.04e-21 | 84.3 |
| MS.gene052234.t1 | AT1G29100 | 36.986 | 146 | 60 | 4 | 34 | 152 | 1 | 141 | 5.50e-20 | 80.9 |
| MS.gene052234.t1 | AT2G18196 | 35.200 | 125 | 71 | 4 | 38 | 152 | 1 | 125 | 4.19e-19 | 78.2 |
| MS.gene052234.t1 | AT3G48970 | 38.686 | 137 | 69 | 4 | 31 | 152 | 4 | 140 | 7.49e-15 | 67.4 |
| MS.gene052234.t1 | AT3G48970 | 38.686 | 137 | 69 | 4 | 31 | 152 | 2 | 138 | 8.96e-15 | 67.4 |
| MS.gene052234.t1 | AT3G48970 | 38.686 | 137 | 69 | 4 | 31 | 152 | 2 | 138 | 8.96e-15 | 67.4 |
| MS.gene052234.t1 | AT1G66240 | 44.444 | 72 | 40 | 0 | 23 | 94 | 26 | 97 | 7.42e-14 | 63.9 |
| MS.gene052234.t1 | AT5G27690 | 48.387 | 62 | 32 | 0 | 34 | 95 | 34 | 95 | 1.47e-13 | 67.0 |
| MS.gene052234.t1 | AT3G06130 | 48.485 | 66 | 34 | 0 | 29 | 94 | 9 | 74 | 2.06e-13 | 66.6 |
| MS.gene052234.t1 | AT3G56240 | 50.000 | 66 | 33 | 0 | 30 | 95 | 3 | 68 | 2.82e-13 | 62.8 |
| MS.gene052234.t1 | AT3G56240 | 50.000 | 66 | 33 | 0 | 30 | 95 | 3 | 68 | 2.82e-13 | 62.8 |
| MS.gene052234.t1 | AT3G06130 | 47.761 | 67 | 35 | 0 | 28 | 94 | 8 | 74 | 3.89e-13 | 65.9 |
| MS.gene052234.t1 | AT5G19090 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 3.56e-12 | 63.2 |
| MS.gene052234.t1 | AT5G19090 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 3.56e-12 | 63.2 |
| MS.gene052234.t1 | AT5G19090 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 3.56e-12 | 63.2 |
| MS.gene052234.t1 | AT5G19090 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 4.52e-12 | 62.8 |
| MS.gene052234.t1 | AT5G19090 | 46.269 | 67 | 36 | 0 | 28 | 94 | 8 | 74 | 4.52e-12 | 62.8 |
| MS.gene052234.t1 | AT1G56210 | 49.231 | 65 | 33 | 0 | 34 | 98 | 44 | 108 | 5.48e-12 | 62.4 |
| MS.gene052234.t1 | AT1G23000 | 42.857 | 70 | 40 | 0 | 29 | 98 | 72 | 141 | 1.79e-11 | 61.2 |
| MS.gene052234.t1 | AT1G23000 | 42.857 | 70 | 40 | 0 | 29 | 98 | 12 | 81 | 1.97e-11 | 60.8 |
| MS.gene052234.t1 | AT5G37860 | 40.845 | 71 | 42 | 0 | 29 | 99 | 9 | 79 | 3.68e-11 | 59.7 |
Find 41 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTATCATCATCTACATAA+TGG | 0.292404 | 3.2:+74833768 | None:intergenic |
| TACATAATGGAGCAGGCATT+TGG | 0.304332 | 3.2:+74833781 | None:intergenic |
| AGAGTACTTATCTGATCTAA+TGG | 0.306737 | 3.2:-74834481 | MS.gene052234:CDS |
| TAAAATCAGTGGAGATAAAC+AGG | 0.372946 | 3.2:-74834047 | MS.gene052234:CDS |
| TTGCGATGGTTGCGAACTTA+AGG | 0.383976 | 3.2:-74834385 | MS.gene052234:CDS |
| ACCATGTTGTATGGCACATA+AGG | 0.433890 | 3.2:+74833934 | None:intergenic |
| AGCAAAGTCAACAGGAAAGA+AGG | 0.439458 | 3.2:-74833968 | MS.gene052234:CDS |
| CAGGAAAGAAGGCAGAGATT+TGG | 0.440709 | 3.2:-74833957 | MS.gene052234:CDS |
| ACATAATGGAGCAGGCATTT+GGG | 0.448683 | 3.2:+74833782 | None:intergenic |
| GGGGTATGTAGAGGCAAATA+AGG | 0.452605 | 3.2:-74834001 | MS.gene052234:CDS |
| TCCTGGATATGTAAGGAGAT+TGG | 0.456785 | 3.2:-74833869 | MS.gene052234:CDS |
| TCCAATCTCCTTACATATCC+AGG | 0.463407 | 3.2:+74833868 | None:intergenic |
| CTAAAGAAAGCAAAGTCAAC+AGG | 0.471841 | 3.2:-74833976 | MS.gene052234:CDS |
| GAGTACTTATCTGATCTAAT+GGG | 0.482086 | 3.2:-74834480 | MS.gene052234:CDS |
| AAAGCCCTCTCTTCAATGAA+TGG | 0.498175 | 3.2:-74834357 | MS.gene052234:intron |
| ATTACAGACCGTAGAGTTGA+AGG | 0.499504 | 3.2:-74834418 | MS.gene052234:CDS |
| TATGACAAGAAGGCTCCTCC+TGG | 0.508900 | 3.2:-74833886 | MS.gene052234:CDS |
| CGTAGAGTTGAAGGTGAGGA+TGG | 0.509056 | 3.2:-74834409 | MS.gene052234:CDS |
| CTTACCATTCATTGAAGAGA+GGG | 0.529075 | 3.2:+74834353 | None:intergenic |
| ATATACACAGAAATGGGAGT+TGG | 0.529253 | 3.2:-74834513 | None:intergenic |
| AGGCTCCTCCTGGATATGTA+AGG | 0.531905 | 3.2:-74833876 | MS.gene052234:CDS |
| GGAGCCTTCTTGTCATAAGA+AGG | 0.533318 | 3.2:+74833892 | None:intergenic |
| GGATGAGCCACCATGTTGTA+TGG | 0.533759 | 3.2:+74833925 | None:intergenic |
| TCATAAGAAGGAGCAGCGTA+TGG | 0.549598 | 3.2:+74833904 | None:intergenic |
| TACACAGAAATGGGAGTTGG+AGG | 0.552311 | 3.2:-74834510 | None:intergenic |
| CATCATCTACATAATGGAGC+AGG | 0.555456 | 3.2:+74833774 | None:intergenic |
| TGCTCCTTCTTATGACAAGA+AGG | 0.562724 | 3.2:-74833896 | MS.gene052234:CDS |
| GTAAGGAGATTGGAGACCAC+TGG | 0.572647 | 3.2:-74833859 | MS.gene052234:CDS |
| TTATCTGATCTAATGGGCAG+TGG | 0.573748 | 3.2:-74834474 | MS.gene052234:CDS |
| CATCCTCACCTTCAACTCTA+CGG | 0.585179 | 3.2:+74834410 | None:intergenic |
| GACAGTAACGGGGTATGTAG+AGG | 0.602619 | 3.2:-74834010 | MS.gene052234:CDS |
| ACTTACCATTCATTGAAGAG+AGG | 0.616934 | 3.2:+74834352 | None:intergenic |
| CATCACTAAACATGGTGGTG+AGG | 0.624282 | 3.2:+74833809 | None:intergenic |
| GCCTTATGTGCCATACAACA+TGG | 0.647674 | 3.2:-74833935 | MS.gene052234:CDS |
| ATATGCTCTAACAGTTCCAG+TGG | 0.649114 | 3.2:+74833843 | None:intergenic |
| AAGGTGAGGATGGATTGCGA+TGG | 0.658836 | 3.2:-74834399 | MS.gene052234:CDS |
| CTAAACATGGTGGTGAGGTG+TGG | 0.665051 | 3.2:+74833814 | None:intergenic |
| AGACCGTAGAGTTGAAGGTG+AGG | 0.688480 | 3.2:-74834413 | MS.gene052234:CDS |
| TGATGCAGGAGTAAAATCAG+TGG | 0.694945 | 3.2:-74834058 | MS.gene052234:intron |
| TTATGTGCCATACAACATGG+TGG | 0.751150 | 3.2:-74833932 | MS.gene052234:CDS |
| AATCTCCTTACATATCCAGG+AGG | 0.766746 | 3.2:+74833871 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGAAAGATAAATTAATAG+AGG | + | chr3.2:74833964-74833983 | None:intergenic | 20.0% |
| !! | GAGAAAGATAAATTAATAGA+GGG | + | chr3.2:74833963-74833982 | None:intergenic | 20.0% |
| ! | TCAAATTATAATTAGTGCGT+CGG | - | chr3.2:74834074-74834093 | MS.gene052234:intron | 25.0% |
| ACAACAAAAAGTGACAGTAA+CGG | - | chr3.2:74834259-74834278 | MS.gene052234:intron | 30.0% | |
| GAGTACTTATCTGATCTAAT+GGG | - | chr3.2:74833801-74833820 | MS.gene052234:CDS | 30.0% | |
| TAAAATCAGTGGAGATAAAC+AGG | - | chr3.2:74834234-74834253 | MS.gene052234:intron | 30.0% | |
| TATCTTTCTCTATATAGCAC+CGG | - | chr3.2:74833973-74833992 | MS.gene052234:CDS | 30.0% | |
| ! | AGAGTACTTATCTGATCTAA+TGG | - | chr3.2:74833800-74833819 | MS.gene052234:CDS | 30.0% |
| ! | TCTTCTTCTTGATTTTGTGA+TGG | + | chr3.2:74833839-74833858 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTGTGGTGATGC+AGG | - | chr3.2:74834209-74834228 | MS.gene052234:intron | 30.0% |
| AACAAAAAGTGACAGTAACG+GGG | - | chr3.2:74834261-74834280 | MS.gene052234:intron | 35.0% | |
| ACTTACCATTCATTGAAGAG+AGG | + | chr3.2:74833932-74833951 | None:intergenic | 35.0% | |
| CAACAAAAAGTGACAGTAAC+GGG | - | chr3.2:74834260-74834279 | MS.gene052234:intron | 35.0% | |
| CTAAAGAAAGCAAAGTCAAC+AGG | - | chr3.2:74834305-74834324 | MS.gene052234:intron | 35.0% | |
| CTTACCATTCATTGAAGAGA+GGG | + | chr3.2:74833931-74833950 | None:intergenic | 35.0% | |
| GCTTGCTTGCATTATATGTA+TGG | - | chr3.2:74834130-74834149 | MS.gene052234:intron | 35.0% | |
| ! | GTTTTCATCACTAAACATGG+TGG | + | chr3.2:74834480-74834499 | None:intergenic | 35.0% |
| ! | TCTTCTTGATTTTGTGATGG+TGG | + | chr3.2:74833836-74833855 | None:intergenic | 35.0% |
| ! | TGGGTTTTCATCACTAAACA+TGG | + | chr3.2:74834483-74834502 | None:intergenic | 35.0% |
| AAAGCCCTCTCTTCAATGAA+TGG | - | chr3.2:74833924-74833943 | MS.gene052234:CDS | 40.0% | |
| AATCTCCTTACATATCCAGG+AGG | + | chr3.2:74834413-74834432 | None:intergenic | 40.0% | |
| ACCATGTTGTATGGCACATA+AGG | + | chr3.2:74834350-74834369 | None:intergenic | 40.0% | |
| ACGTCATCAATATGAAGTGC+CGG | + | chr3.2:74833995-74834014 | None:intergenic | 40.0% | |
| AGCAAAGTCAACAGGAAAGA+AGG | - | chr3.2:74834313-74834332 | MS.gene052234:intron | 40.0% | |
| ATATGCTCTAACAGTTCCAG+TGG | + | chr3.2:74834441-74834460 | None:intergenic | 40.0% | |
| ATTACAGACCGTAGAGTTGA+AGG | - | chr3.2:74833863-74833882 | MS.gene052234:CDS | 40.0% | |
| TCCAATCTCCTTACATATCC+AGG | + | chr3.2:74834416-74834435 | None:intergenic | 40.0% | |
| TCCTGGATATGTAAGGAGAT+TGG | - | chr3.2:74834412-74834431 | MS.gene052234:CDS | 40.0% | |
| TGATGCAGGAGTAAAATCAG+TGG | - | chr3.2:74834223-74834242 | MS.gene052234:intron | 40.0% | |
| TGCTCCTTCTTATGACAAGA+AGG | - | chr3.2:74834385-74834404 | MS.gene052234:CDS | 40.0% | |
| TTATGTGCCATACAACATGG+TGG | - | chr3.2:74834349-74834368 | MS.gene052234:intron | 40.0% | |
| ! | ACATAATGGAGCAGGCATTT+GGG | + | chr3.2:74834502-74834521 | None:intergenic | 40.0% |
| ! | TACATAATGGAGCAGGCATT+TGG | + | chr3.2:74834503-74834522 | None:intergenic | 40.0% |
| ! | TTATCTGATCTAATGGGCAG+TGG | - | chr3.2:74833807-74833826 | MS.gene052234:CDS | 40.0% |
| CAGGAAAGAAGGCAGAGATT+TGG | - | chr3.2:74834324-74834343 | MS.gene052234:intron | 45.0% | |
| CATCCTCACCTTCAACTCTA+CGG | + | chr3.2:74833874-74833893 | None:intergenic | 45.0% | |
| GCCTTATGTGCCATACAACA+TGG | - | chr3.2:74834346-74834365 | MS.gene052234:intron | 45.0% | |
| GGAGCCTTCTTGTCATAAGA+AGG | + | chr3.2:74834392-74834411 | None:intergenic | 45.0% | |
| GGGGTATGTAGAGGCAAATA+AGG | - | chr3.2:74834280-74834299 | MS.gene052234:intron | 45.0% | |
| TCATAAGAAGGAGCAGCGTA+TGG | + | chr3.2:74834380-74834399 | None:intergenic | 45.0% | |
| TTGCGATGGTTGCGAACTTA+AGG | - | chr3.2:74833896-74833915 | MS.gene052234:CDS | 45.0% | |
| ! | CATCACTAAACATGGTGGTG+AGG | + | chr3.2:74834475-74834494 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTTTG+TGG | - | chr3.2:74834200-74834219 | MS.gene052234:intron | 5.0% |
| AGACCGTAGAGTTGAAGGTG+AGG | - | chr3.2:74833868-74833887 | MS.gene052234:CDS | 50.0% | |
| AGGCTCCTCCTGGATATGTA+AGG | - | chr3.2:74834405-74834424 | MS.gene052234:CDS | 50.0% | |
| CGTAGAGTTGAAGGTGAGGA+TGG | - | chr3.2:74833872-74833891 | MS.gene052234:CDS | 50.0% | |
| CGTCTGACATCACTGACACA+TGG | - | chr3.2:74834021-74834040 | MS.gene052234:CDS | 50.0% | |
| GGATGAGCCACCATGTTGTA+TGG | + | chr3.2:74834359-74834378 | None:intergenic | 50.0% | |
| GTAAGGAGATTGGAGACCAC+TGG | - | chr3.2:74834422-74834441 | MS.gene052234:CDS | 50.0% | |
| GTGTCAGTGATGTCAGACGT+TGG | + | chr3.2:74834020-74834039 | None:intergenic | 50.0% | |
| TATGACAAGAAGGCTCCTCC+TGG | - | chr3.2:74834395-74834414 | MS.gene052234:CDS | 50.0% | |
| ! | CTAAACATGGTGGTGAGGTG+TGG | + | chr3.2:74834470-74834489 | None:intergenic | 50.0% |
| ! | GACAGTAACGGGGTATGTAG+AGG | - | chr3.2:74834271-74834290 | MS.gene052234:intron | 50.0% |
| !! | AAGGTGAGGATGGATTGCGA+TGG | - | chr3.2:74833882-74833901 | MS.gene052234:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 74833780 | 74834523 | 74833780 | ID=MS.gene052234 |
| chr3.2 | mRNA | 74833780 | 74834523 | 74833780 | ID=MS.gene052234.t1;Parent=MS.gene052234 |
| chr3.2 | exon | 74834358 | 74834523 | 74834358 | ID=MS.gene052234.t1.exon1;Parent=MS.gene052234.t1 |
| chr3.2 | CDS | 74834358 | 74834523 | 74834358 | ID=cds.MS.gene052234.t1;Parent=MS.gene052234.t1 |
| chr3.2 | exon | 74833780 | 74834072 | 74833780 | ID=MS.gene052234.t1.exon2;Parent=MS.gene052234.t1 |
| chr3.2 | CDS | 74833780 | 74834072 | 74833780 | ID=cds.MS.gene052234.t1;Parent=MS.gene052234.t1 |
| Gene Sequence |
| Protein sequence |
