Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79403.t1 | XP_003599003.2 | 88.9 | 225 | 19 | 2 | 1 | 225 | 1 | 219 | 2.30E-110 | 408.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79403.t1 | Q94F39 | 34.4 | 241 | 116 | 6 | 8 | 225 | 9 | 230 | 6.8e-26 | 119.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79403.t1 | G7IZB8 | 88.9 | 225 | 19 | 2 | 1 | 225 | 1 | 219 | 1.7e-110 | 408.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene79403 | 0.80004 | 1.74E-48 | -1.69E-46 |
| MS.gene057690 | MS.gene79403 | 0.817247 | 3.64E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79403.t1 | MTR_3g025970 | 88.889 | 225 | 19 | 2 | 1 | 225 | 1 | 219 | 7.20e-148 | 410 |
| MS.gene79403.t1 | MTR_7g013820 | 67.606 | 71 | 22 | 1 | 151 | 220 | 287 | 357 | 6.75e-27 | 106 |
| MS.gene79403.t1 | MTR_5g045370 | 64.706 | 68 | 23 | 1 | 156 | 222 | 324 | 391 | 6.14e-23 | 96.7 |
| MS.gene79403.t1 | MTR_8g012620 | 56.338 | 71 | 30 | 1 | 156 | 225 | 225 | 295 | 3.17e-21 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79403.t1 | AT3G29575 | 34.894 | 235 | 111 | 6 | 14 | 225 | 15 | 230 | 1.32e-30 | 113 |
| MS.gene79403.t1 | AT3G29575 | 34.894 | 235 | 111 | 6 | 14 | 225 | 15 | 230 | 1.32e-30 | 113 |
| MS.gene79403.t1 | AT3G29575 | 34.894 | 235 | 111 | 6 | 14 | 225 | 15 | 230 | 1.32e-30 | 113 |
| MS.gene79403.t1 | AT3G07255 | 54.412 | 68 | 31 | 0 | 158 | 225 | 226 | 293 | 1.91e-23 | 95.9 |
| MS.gene79403.t1 | AT1G13740 | 51.546 | 97 | 42 | 3 | 129 | 220 | 245 | 341 | 9.39e-23 | 94.7 |
| MS.gene79403.t1 | AT1G69260 | 62.500 | 64 | 23 | 1 | 158 | 220 | 273 | 336 | 7.86e-22 | 92.4 |
| MS.gene79403.t1 | AT3G02140 | 31.618 | 272 | 129 | 9 | 5 | 220 | 42 | 312 | 3.82e-17 | 79.0 |
| MS.gene79403.t1 | AT4G28910 | 51.020 | 49 | 24 | 0 | 158 | 206 | 357 | 405 | 2.26e-12 | 65.9 |
| MS.gene79403.t1 | AT4G28910 | 51.020 | 49 | 24 | 0 | 158 | 206 | 357 | 405 | 2.26e-12 | 65.9 |
| MS.gene79403.t1 | AT4G28910 | 51.020 | 49 | 24 | 0 | 158 | 206 | 357 | 405 | 2.26e-12 | 65.9 |
Find 54 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCGACTATTGTAGTCTTAA+AGG | 0.159724 | 3.1:-16816394 | MS.gene79403:CDS |
| CTTGGTTGATATCTGAAATT+TGG | 0.160083 | 3.1:+16816525 | None:intergenic |
| CCTTCTATTCGCTTCCCATT+TGG | 0.252102 | 3.1:+16816316 | None:intergenic |
| GAAATATTTCTGTGTCAAAT+TGG | 0.280175 | 3.1:-16818328 | MS.gene79403:CDS |
| ATTATCCTTCCACTATTAAC+TGG | 0.289561 | 3.1:+16818266 | None:intergenic |
| CTTCTATTCGCTTCCCATTT+GGG | 0.304576 | 3.1:+16816317 | None:intergenic |
| ATATCAACCAAGCATGAAAA+TGG | 0.354593 | 3.1:-16816514 | MS.gene79403:CDS |
| CCAAATGGGAAGCGAATAGA+AGG | 0.361905 | 3.1:-16816316 | MS.gene79403:CDS |
| AAAACAGTGATATGCTTCAT+TGG | 0.397580 | 3.1:+16816181 | None:intergenic |
| TGCTCTCTTCCAGTTAATAG+TGG | 0.401154 | 3.1:-16818275 | MS.gene79403:CDS |
| ACGACTGGAGATGGCCCAAA+TGG | 0.442097 | 3.1:-16816331 | MS.gene79403:CDS |
| AGTGGAATTTCCTTGCCTAC+TGG | 0.445192 | 3.1:+16816472 | None:intergenic |
| AAGTAGAAAGCTTAAGAGTA+AGG | 0.445299 | 3.1:+16818411 | None:intergenic |
| TCATCAATTGCTGGAGAGAT+AGG | 0.451851 | 3.1:-16818350 | MS.gene79403:CDS |
| GCATGCATCACAAACTCCTT+TGG | 0.454512 | 3.1:+16816226 | None:intergenic |
| ACTCCTTCAGATGAATATCT+TGG | 0.463375 | 3.1:+16816556 | None:intergenic |
| ACTCTTAAGCTTTCTACTTG+TGG | 0.472319 | 3.1:-16818407 | MS.gene79403:CDS |
| TGGAAGAAAAGAGGTTGATA+AGG | 0.482456 | 3.1:-16818376 | MS.gene79403:CDS |
| CCTTTAAGACTACAATAGTC+GGG | 0.484073 | 3.1:+16816394 | None:intergenic |
| CAAGCATGAAAATGGTTCAA+TGG | 0.498361 | 3.1:-16816506 | MS.gene79403:CDS |
| TTAGCAAACTTAGGTGGAAG+TGG | 0.503620 | 3.1:+16816454 | None:intergenic |
| TGTTTAGTATTAGCAAACTT+AGG | 0.505715 | 3.1:+16816445 | None:intergenic |
| GTCGATCTCTAAAATGAGAC+TGG | 0.510276 | 3.1:+16816157 | None:intergenic |
| ATAAGGTCATCATCAATTGC+TGG | 0.511069 | 3.1:-16818359 | MS.gene79403:CDS |
| AAGGGTTTCTGTACAAGTAT+AGG | 0.514024 | 3.1:-16816297 | MS.gene79403:CDS |
| ACCTTTAAGACTACAATAGT+CGG | 0.514274 | 3.1:+16816393 | None:intergenic |
| TTTCTGTACAAGTATAGGTC+TGG | 0.514901 | 3.1:-16816292 | MS.gene79403:CDS |
| TCTCCAGTCGTTGTAACGCT+TGG | 0.516896 | 3.1:+16816343 | None:intergenic |
| ATGCCAAGCGTTACAACGAC+TGG | 0.521031 | 3.1:-16816346 | MS.gene79403:CDS |
| CGACTGGAGATGGCCCAAAT+GGG | 0.526168 | 3.1:-16816330 | MS.gene79403:CDS |
| GAGCAAGATCTCTCTAAAGA+TGG | 0.534736 | 3.1:+16818293 | None:intergenic |
| TTCTACTTGTGGTGAAAATG+TGG | 0.542872 | 3.1:-16818396 | MS.gene79403:CDS |
| CTCTTCCAGTTAATAGTGGA+AGG | 0.543214 | 3.1:-16818271 | MS.gene79403:CDS |
| AGCGTTACAACGACTGGAGA+TGG | 0.557678 | 3.1:-16816340 | MS.gene79403:CDS |
| GGTCCAAGATATTCATCTGA+AGG | 0.575615 | 3.1:-16816559 | MS.gene79403:CDS |
| AAGGAGTTTGTGATGCATGC+TGG | 0.584880 | 3.1:-16816223 | MS.gene79403:CDS |
| GTGAAAATGTGGAAGAAAAG+AGG | 0.586785 | 3.1:-16818385 | MS.gene79403:CDS |
| TTTCAAGAAACCAGTAGGCA+AGG | 0.595224 | 3.1:-16816482 | MS.gene79403:CDS |
| TAGTCTTAAAGGTGATGTGA+TGG | 0.597362 | 3.1:-16816383 | MS.gene79403:CDS |
| ATGGCTTTCAAGAAACCAGT+AGG | 0.605558 | 3.1:-16816487 | MS.gene79403:CDS |
| TGGTAGTTTCCTCACTCCAA+AGG | 0.606493 | 3.1:-16816242 | MS.gene79403:CDS |
| TTAGTATTAGCAAACTTAGG+TGG | 0.607623 | 3.1:+16816448 | None:intergenic |
| GCATGCTGGTGGAAAGGAAG+TGG | 0.616381 | 3.1:-16816209 | MS.gene79403:CDS |
| TGTATTGTATGTGTCTGCCA+TGG | 0.617683 | 3.1:-16816262 | MS.gene79403:CDS |
| TGTGATGCATGCTGGTGGAA+AGG | 0.617870 | 3.1:-16816215 | MS.gene79403:CDS |
| GTGGCAGATTCAGAGCTACA+TGG | 0.626711 | 3.1:-16818218 | MS.gene79403:intron |
| TCACAAACTCCTTTGGAGTG+AGG | 0.626847 | 3.1:+16816233 | None:intergenic |
| TCTCTCTAAAGATGGCACAA+AGG | 0.638446 | 3.1:+16818301 | None:intergenic |
| AAAAGAGAGGCATAGAAGTG+TGG | 0.640430 | 3.1:-16818237 | MS.gene79403:CDS |
| GGATAATGTTGCTAAAAGAG+AGG | 0.645846 | 3.1:-16818250 | MS.gene79403:CDS |
| GAGTTTGTGATGCATGCTGG+TGG | 0.651077 | 3.1:-16816220 | MS.gene79403:CDS |
| CTTTAAGACTACAATAGTCG+GGG | 0.667470 | 3.1:+16816395 | None:intergenic |
| TTGGAGTGAGGAAACTACCA+TGG | 0.693233 | 3.1:+16816245 | None:intergenic |
| CAAATGGGAAGCGAATAGAA+GGG | 0.736924 | 3.1:-16816315 | MS.gene79403:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTCATTATTATTATTTT+AGG | - | chr3.1:16816198-16816217 | MS.gene79403:CDS | 10.0% |
| !!! | TTTTTTTTTTTTTTTTTCAG+AGG | - | chr3.1:16816268-16816287 | MS.gene79403:CDS | 10.0% |
| !! | ATAATGACATTATCAATATT+AGG | - | chr3.1:16817206-16817225 | MS.gene79403:intron | 15.0% |
| !! | ATTAAAATAAGAAGGAAAAT+AGG | + | chr3.1:16816963-16816982 | None:intergenic | 15.0% |
| !! | TATATATGATGATAACAAAT+AGG | - | chr3.1:16817021-16817040 | MS.gene79403:intron | 15.0% |
| !!! | TCTTCTATTTATTTTTCATA+TGG | - | chr3.1:16817943-16817962 | MS.gene79403:intron | 15.0% |
| !! | AATCAAGTTTAACTATATTG+CGG | + | chr3.1:16817835-16817854 | None:intergenic | 20.0% |
| !! | AATTTCAATTAGTTCAATCA+CGG | + | chr3.1:16817974-16817993 | None:intergenic | 20.0% |
| !! | AATTTGAAAAATCAAAAGCA+GGG | + | chr3.1:16817390-16817409 | None:intergenic | 20.0% |
| !! | ATATTTGATCTCAAATTTGT+TGG | - | chr3.1:16816636-16816655 | MS.gene79403:intron | 20.0% |
| !! | ATTGAAATTATTGAATCATC+TGG | - | chr3.1:16817985-16818004 | MS.gene79403:intron | 20.0% |
| !! | TGTTGTAAACCTTTATATTA+CGG | - | chr3.1:16816685-16816704 | MS.gene79403:intron | 20.0% |
| !! | TTAATCAAGAAAAATGTTAC+CGG | + | chr3.1:16818031-16818050 | None:intergenic | 20.0% |
| !!! | TTCCTTCTTATTTTAATTGT+GGG | - | chr3.1:16816966-16816985 | MS.gene79403:intron | 20.0% |
| !!! | TTTCCTTCTTATTTTAATTG+TGG | - | chr3.1:16816965-16816984 | MS.gene79403:intron | 20.0% |
| !!! | TTTTTTTTTCAGAGGTTTTA+TGG | - | chr3.1:16816276-16816295 | MS.gene79403:CDS | 20.0% |
| ! | AAAAAACAGAACAAATTTGG+AGG | - | chr3.1:16817718-16817737 | MS.gene79403:intron | 25.0% |
| ! | AAACAGCTAAGAAATTTGAA+AGG | + | chr3.1:16818086-16818105 | None:intergenic | 25.0% |
| ! | AAATTGTTATCCTACATGTT+TGG | - | chr3.1:16817405-16817424 | MS.gene79403:intron | 25.0% |
| ! | AATTAGGATGAAAAGAAGTT+AGG | + | chr3.1:16818134-16818153 | None:intergenic | 25.0% |
| ! | CAATTGTAGCCAAAATATAA+AGG | + | chr3.1:16816757-16816776 | None:intergenic | 25.0% |
| ! | CAATTTGAAAAATCAAAAGC+AGG | + | chr3.1:16817391-16817410 | None:intergenic | 25.0% |
| ! | CGTATTAAAAACCACTAAAT+GGG | - | chr3.1:16816867-16816886 | MS.gene79403:intron | 25.0% |
| ! | GTGAAAATTAGAATGAGTTA+AGG | + | chr3.1:16816580-16816599 | None:intergenic | 25.0% |
| ! | TCGTATTAAAAACCACTAAA+TGG | - | chr3.1:16816866-16816885 | MS.gene79403:intron | 25.0% |
| ! | TGTTTAGTATTAGCAAACTT+AGG | + | chr3.1:16818298-16818317 | None:intergenic | 25.0% |
| ! | TTAACCAATGTTGTAAAAAC+AGG | - | chr3.1:16817758-16817777 | MS.gene79403:intron | 25.0% |
| !! | AAAAGATACTGATAATGTGA+AGG | - | chr3.1:16817232-16817251 | MS.gene79403:intron | 25.0% |
| !! | ATACTCAAATTTCTAAGAAC+AGG | - | chr3.1:16817545-16817564 | MS.gene79403:intron | 25.0% |
| !! | ATTATTTAAGACCCATTTAG+TGG | + | chr3.1:16816881-16816900 | None:intergenic | 25.0% |
| !! | CCAAAATATAAAGGATTTTG+AGG | + | chr3.1:16816748-16816767 | None:intergenic | 25.0% |
| !! | CCTCAAAATCCTTTATATTT+TGG | - | chr3.1:16816745-16816764 | MS.gene79403:intron | 25.0% |
| !! | CTATCTTTTCGATAAAAAAC+TGG | + | chr3.1:16816993-16817012 | None:intergenic | 25.0% |
| !! | GAAATATTTCTGTGTCAAAT+TGG | - | chr3.1:16816412-16816431 | MS.gene79403:CDS | 25.0% |
| !! | TAATACATGTGACTCTTTTA+AGG | + | chr3.1:16816821-16816840 | None:intergenic | 25.0% |
| !! | TATGAGTCATGACAAATTTT+CGG | - | chr3.1:16817623-16817642 | MS.gene79403:intron | 25.0% |
| !! | TGTGTTTTTCCGTAATATAA+AGG | + | chr3.1:16816697-16816716 | None:intergenic | 25.0% |
| !!! | TTATATTTTGGCTACAATTG+TGG | - | chr3.1:16816757-16816776 | MS.gene79403:intron | 25.0% |
| AAAACAGTGATATGCTTCAT+TGG | + | chr3.1:16818562-16818581 | None:intergenic | 30.0% | |
| AACGATGTAAATACCAACTA+AGG | + | chr3.1:16817170-16817189 | None:intergenic | 30.0% | |
| AAGTAGAAAGCTTAAGAGTA+AGG | + | chr3.1:16816332-16816351 | None:intergenic | 30.0% | |
| ACGATGTAAATACCAACTAA+GGG | + | chr3.1:16817169-16817188 | None:intergenic | 30.0% | |
| ACGGAAAAACACAAAAAATG+TGG | - | chr3.1:16816704-16816723 | MS.gene79403:intron | 30.0% | |
| ATAAAGACACCAACCTATTA+AGG | + | chr3.1:16817076-16817095 | None:intergenic | 30.0% | |
| ATATCAACCAAGCATGAAAA+TGG | - | chr3.1:16818226-16818245 | MS.gene79403:CDS | 30.0% | |
| ATTATCCTTCCACTATTAAC+TGG | + | chr3.1:16816477-16816496 | None:intergenic | 30.0% | |
| ATTGGTTAACACTCATAACA+TGG | + | chr3.1:16817747-16817766 | None:intergenic | 30.0% | |
| CTGAGTTATCAAAAGACATA+TGG | - | chr3.1:16817673-16817692 | MS.gene79403:intron | 30.0% | |
| GAAATTATTGAATCATCTGG+AGG | - | chr3.1:16817988-16818007 | MS.gene79403:intron | 30.0% | |
| GAAGGAAAATAGGTAAAAGT+TGG | + | chr3.1:16816953-16816972 | None:intergenic | 30.0% | |
| GGGAAAAAACAGAACAAATT+TGG | - | chr3.1:16817715-16817734 | MS.gene79403:intron | 30.0% | |
| GTCCCACAATTAAAATAAGA+AGG | + | chr3.1:16816971-16816990 | None:intergenic | 30.0% | |
| TAGTTAAACTTGATTGAACC+AGG | - | chr3.1:16817840-16817859 | MS.gene79403:intron | 30.0% | |
| TCTAAGAACAGGAACATAAA+TGG | - | chr3.1:16817556-16817575 | MS.gene79403:intron | 30.0% | |
| TGCTACAAAATGTGATATTG+CGG | + | chr3.1:16817330-16817349 | None:intergenic | 30.0% | |
| TTAGTATTAGCAAACTTAGG+TGG | + | chr3.1:16818295-16818314 | None:intergenic | 30.0% | |
| TTCACATGTGACACATATAT+AGG | - | chr3.1:16818160-16818179 | MS.gene79403:intron | 30.0% | |
| ! | AAATGTGGTTGATATTGTTG+CGG | - | chr3.1:16816719-16816738 | MS.gene79403:intron | 30.0% |
| ! | ATGATCAGAGTACTTGTATA+AGG | - | chr3.1:16816917-16816936 | MS.gene79403:intron | 30.0% |
| ! | CTTGGTTGATATCTGAAATT+TGG | + | chr3.1:16818218-16818237 | None:intergenic | 30.0% |
| ! | TGATCAGAGTACTTGTATAA+GGG | - | chr3.1:16816918-16816937 | MS.gene79403:intron | 30.0% |
| ! | TTAGTTGGTATTTACATCGT+TGG | - | chr3.1:16817169-16817188 | MS.gene79403:intron | 30.0% |
| !! | AATAGGTTGGTGTCTTTATT+AGG | - | chr3.1:16817077-16817096 | MS.gene79403:intron | 30.0% |
| !! | ACCTTTAAGACTACAATAGT+CGG | + | chr3.1:16818350-16818369 | None:intergenic | 30.0% |
| !! | GTTAGAATGGCTCTAAATTA+CGG | + | chr3.1:16817368-16817387 | None:intergenic | 30.0% |
| !!! | CTTTAGTTTTACTACGATTG+TGG | + | chr3.1:16816795-16816814 | None:intergenic | 30.0% |
| !!! | GAAGGTTTTTTACATAGCTT+TGG | - | chr3.1:16817250-16817269 | MS.gene79403:intron | 30.0% |
| AAGGGTTTCTGTACAAGTAT+AGG | - | chr3.1:16818443-16818462 | MS.gene79403:CDS | 35.0% | |
| AATCAAAAGCAGGGTTAGAA+TGG | + | chr3.1:16817381-16817400 | None:intergenic | 35.0% | |
| ACCATGTTAAATTGTGGTTG+CGG | - | chr3.1:16816659-16816678 | MS.gene79403:intron | 35.0% | |
| ACTCCTTCAGATGAATATCT+TGG | + | chr3.1:16818187-16818206 | None:intergenic | 35.0% | |
| ACTCTTAAGCTTTCTACTTG+TGG | - | chr3.1:16816333-16816352 | MS.gene79403:CDS | 35.0% | |
| AGAACAGGAACATAAATGGT+TGG | - | chr3.1:16817560-16817579 | MS.gene79403:intron | 35.0% | |
| ATAAGGTCATCATCAATTGC+TGG | - | chr3.1:16816381-16816400 | MS.gene79403:CDS | 35.0% | |
| CAACATGATACCAAACATGT+AGG | + | chr3.1:16817418-16817437 | None:intergenic | 35.0% | |
| CAAGCATGAAAATGGTTCAA+TGG | - | chr3.1:16818234-16818253 | MS.gene79403:CDS | 35.0% | |
| CACATGTGAATGCATCAATT+AGG | + | chr3.1:16818150-16818169 | None:intergenic | 35.0% | |
| CATTAATCGCCAATAACACT+AGG | + | chr3.1:16817517-16817536 | None:intergenic | 35.0% | |
| CTAAATTACGGTTGCAATTG+TGG | + | chr3.1:16817356-16817375 | None:intergenic | 35.0% | |
| CTACATGTTTGGTATCATGT+TGG | - | chr3.1:16817416-16817435 | MS.gene79403:intron | 35.0% | |
| GAACAGGAACATAAATGGTT+GGG | - | chr3.1:16817561-16817580 | MS.gene79403:intron | 35.0% | |
| GACTCATATCTAACAAAAGC+TGG | + | chr3.1:16817611-16817630 | None:intergenic | 35.0% | |
| GGATAATGTTGCTAAAAGAG+AGG | - | chr3.1:16816490-16816509 | MS.gene79403:CDS | 35.0% | |
| GTGAAAATGTGGAAGAAAAG+AGG | - | chr3.1:16816355-16816374 | MS.gene79403:CDS | 35.0% | |
| TAACTATATTGCGGTACAAC+CGG | + | chr3.1:16817826-16817845 | None:intergenic | 35.0% | |
| TGATCTTATTGTCCCTTAGT+TGG | - | chr3.1:16817154-16817173 | MS.gene79403:intron | 35.0% | |
| TGTTGGACCATGTTAAATTG+TGG | - | chr3.1:16816653-16816672 | MS.gene79403:intron | 35.0% | |
| TTCTACTTGTGGTGAAAATG+TGG | - | chr3.1:16816344-16816363 | MS.gene79403:CDS | 35.0% | |
| TTTCTGTACAAGTATAGGTC+TGG | - | chr3.1:16818448-16818467 | MS.gene79403:CDS | 35.0% | |
| ! | CATTGAACCATTTTCATGCT+TGG | + | chr3.1:16818236-16818255 | None:intergenic | 35.0% |
| ! | TAGTCTTAAAGGTGATGTGA+TGG | - | chr3.1:16818357-16818376 | MS.gene79403:CDS | 35.0% |
| !! | CCTTTAAGACTACAATAGTC+GGG | + | chr3.1:16818349-16818368 | None:intergenic | 35.0% |
| !! | CTTTAAGACTACAATAGTCG+GGG | + | chr3.1:16818348-16818367 | None:intergenic | 35.0% |
| !! | TGGAAGAAAAGAGGTTGATA+AGG | - | chr3.1:16816364-16816383 | MS.gene79403:CDS | 35.0% |
| !! | TTTGAAAGGCGTCTCAAAAT+CGG | + | chr3.1:16818072-16818091 | None:intergenic | 35.0% |
| AACTATATTGCGGTACAACC+GGG | + | chr3.1:16817825-16817844 | None:intergenic | 40.0% | |
| ACCGCAACCACAATTTAACA+TGG | + | chr3.1:16816663-16816682 | None:intergenic | 40.0% | |
| AGACATATGGCTACGAGTTT+AGG | - | chr3.1:16817686-16817705 | MS.gene79403:intron | 40.0% | |
| ATGGCTTTCAAGAAACCAGT+AGG | - | chr3.1:16818253-16818272 | MS.gene79403:CDS | 40.0% | |
| CAAATGGGAAGCGAATAGAA+GGG | - | chr3.1:16818425-16818444 | MS.gene79403:CDS | 40.0% | |
| CAACCTATTAAGGATCTCGT+TGG | + | chr3.1:16817066-16817085 | None:intergenic | 40.0% | |
| CAACGAGATCCTTAATAGGT+TGG | - | chr3.1:16817064-16817083 | MS.gene79403:intron | 40.0% | |
| CAGCATTACATCTGCAATTG+CGG | - | chr3.1:16817284-16817303 | MS.gene79403:intron | 40.0% | |
| CTTCTATTCGCTTCCCATTT+GGG | + | chr3.1:16818426-16818445 | None:intergenic | 40.0% | |
| GGTCCAAGATATTCATCTGA+AGG | - | chr3.1:16818181-16818200 | MS.gene79403:intron | 40.0% | |
| TCATCAATTGCTGGAGAGAT+AGG | - | chr3.1:16816390-16816409 | MS.gene79403:CDS | 40.0% | |
| TGCTCTCTTCCAGTTAATAG+TGG | - | chr3.1:16816465-16816484 | MS.gene79403:CDS | 40.0% | |
| TGTATTGTATGTGTCTGCCA+TGG | - | chr3.1:16818478-16818497 | MS.gene79403:intron | 40.0% | |
| TGTTCGTGTCCTAGTGTTAT+TGG | - | chr3.1:16817505-16817524 | MS.gene79403:intron | 40.0% | |
| TTAGCAAACTTAGGTGGAAG+TGG | + | chr3.1:16818289-16818308 | None:intergenic | 40.0% | |
| TTTCAAGAAACCAGTAGGCA+AGG | - | chr3.1:16818258-16818277 | MS.gene79403:CDS | 40.0% | |
| ! | AAAAGAGAGGCATAGAAGTG+TGG | - | chr3.1:16816503-16816522 | MS.gene79403:CDS | 40.0% |
| ! | CCCGACTATTGTAGTCTTAA+AGG | - | chr3.1:16818346-16818365 | MS.gene79403:CDS | 40.0% |
| ! | CTCTTCCAGTTAATAGTGGA+AGG | - | chr3.1:16816469-16816488 | MS.gene79403:CDS | 40.0% |
| ! | GAGCAAGATCTCTCTAAAGA+TGG | + | chr3.1:16816450-16816469 | None:intergenic | 40.0% |
| ! | TCTCTCTAAAGATGGCACAA+AGG | + | chr3.1:16816442-16816461 | None:intergenic | 40.0% |
| !!! | CGGTCCTGTTTTTACAACAT+TGG | + | chr3.1:16817765-16817784 | None:intergenic | 40.0% |
| AAAAACAGGACCGAACCTGT+CGG | - | chr3.1:16817772-16817791 | MS.gene79403:intron | 45.0% | |
| AAGGAGTTTGTGATGCATGC+TGG | - | chr3.1:16818517-16818536 | MS.gene79403:intron | 45.0% | |
| AGTGGAATTTCCTTGCCTAC+TGG | + | chr3.1:16818271-16818290 | None:intergenic | 45.0% | |
| CAGGAACATAAATGGTTGGG+AGG | - | chr3.1:16817564-16817583 | MS.gene79403:intron | 45.0% | |
| CCAAATGGGAAGCGAATAGA+AGG | - | chr3.1:16818424-16818443 | MS.gene79403:CDS | 45.0% | |
| CCTATTAAGGATCTCGTTGG+AGG | + | chr3.1:16817063-16817082 | None:intergenic | 45.0% | |
| CCTCCAACGAGATCCTTAAT+AGG | - | chr3.1:16817060-16817079 | MS.gene79403:intron | 45.0% | |
| CCTTCTATTCGCTTCCCATT+TGG | + | chr3.1:16818427-16818446 | None:intergenic | 45.0% | |
| GAACCAGGTTAAACTGCAAC+TGG | - | chr3.1:16817855-16817874 | MS.gene79403:intron | 45.0% | |
| GCATGCATCACAAACTCCTT+TGG | + | chr3.1:16818517-16818536 | None:intergenic | 45.0% | |
| GCTACGAGTTTAGGAGCAAT+GGG | - | chr3.1:16817695-16817714 | MS.gene79403:intron | 45.0% | |
| TGGTAGTTTCCTCACTCCAA+AGG | - | chr3.1:16818498-16818517 | MS.gene79403:intron | 45.0% | |
| TTACCGGAGATCGATACAGT+AGG | + | chr3.1:16818015-16818034 | None:intergenic | 45.0% | |
| TTGGAGTGAGGAAACTACCA+TGG | + | chr3.1:16818498-16818517 | None:intergenic | 45.0% | |
| !! | TCACAAACTCCTTTGGAGTG+AGG | + | chr3.1:16818510-16818529 | None:intergenic | 45.0% |
| !!! | TTTAACTTAAATTTTTTATA+TGG | - | chr3.1:16816603-16816622 | MS.gene79403:intron | 5.0% |
| ACAACCGGGATCAAACCAAC+CGG | + | chr3.1:16817811-16817830 | None:intergenic | 50.0% | |
| AGCGTTACAACGACTGGAGA+TGG | - | chr3.1:16818400-16818419 | MS.gene79403:CDS | 50.0% | |
| ATGCCAAGCGTTACAACGAC+TGG | - | chr3.1:16818394-16818413 | MS.gene79403:CDS | 50.0% | |
| CTGCCAGTTGCAGTTTAACC+TGG | + | chr3.1:16817861-16817880 | None:intergenic | 50.0% | |
| GAGTTTGTGATGCATGCTGG+TGG | - | chr3.1:16818520-16818539 | MS.gene79403:intron | 50.0% | |
| GGCTACGAGTTTAGGAGCAA+TGG | - | chr3.1:16817694-16817713 | MS.gene79403:intron | 50.0% | |
| GTGGCAGATTCAGAGCTACA+TGG | - | chr3.1:16816522-16816541 | MS.gene79403:CDS | 50.0% | |
| TCTCCAGTCGTTGTAACGCT+TGG | + | chr3.1:16818400-16818419 | None:intergenic | 50.0% | |
| TGTCGGTACTGTCTGTTTGC+CGG | - | chr3.1:16817789-16817808 | MS.gene79403:intron | 50.0% | |
| TGTGATGCATGCTGGTGGAA+AGG | - | chr3.1:16818525-16818544 | MS.gene79403:intron | 50.0% | |
| ! | GGTCCTACTGTATCGATCTC+CGG | - | chr3.1:16818009-16818028 | MS.gene79403:intron | 50.0% |
| !! | ACAGACAGTACCGACAGGTT+CGG | + | chr3.1:16817785-16817804 | None:intergenic | 50.0% |
| !! | TTTGCCGGTTGGTTTGATCC+CGG | - | chr3.1:16817804-16817823 | MS.gene79403:intron | 50.0% |
| ACGACTGGAGATGGCCCAAA+TGG | - | chr3.1:16818409-16818428 | MS.gene79403:CDS | 55.0% | |
| CGACTGGAGATGGCCCAAAT+GGG | - | chr3.1:16818410-16818429 | MS.gene79403:CDS | 55.0% | |
| GCATGCTGGTGGAAAGGAAG+TGG | - | chr3.1:16818531-16818550 | MS.gene79403:intron | 55.0% | |
| GGTACTGTCTGTTTGCCGGT+TGG | - | chr3.1:16817793-16817812 | MS.gene79403:intron | 55.0% | |
| !! | GGCAAACAGACAGTACCGAC+AGG | + | chr3.1:16817790-16817809 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 16816165 | 16818597 | 16816165 | ID=MS.gene79403 |
| chr3.1 | mRNA | 16816165 | 16818597 | 16816165 | ID=MS.gene79403.t1;Parent=MS.gene79403 |
| chr3.1 | exon | 16818592 | 16818597 | 16818592 | ID=MS.gene79403.t1.exon1;Parent=MS.gene79403.t1 |
| chr3.1 | CDS | 16818592 | 16818597 | 16818592 | ID=cds.MS.gene79403.t1;Parent=MS.gene79403.t1 |
| chr3.1 | exon | 16818219 | 16818474 | 16818219 | ID=MS.gene79403.t1.exon2;Parent=MS.gene79403.t1 |
| chr3.1 | CDS | 16818219 | 16818474 | 16818219 | ID=cds.MS.gene79403.t1;Parent=MS.gene79403.t1 |
| chr3.1 | exon | 16816165 | 16816580 | 16816165 | ID=MS.gene79403.t1.exon3;Parent=MS.gene79403.t1 |
| chr3.1 | CDS | 16816165 | 16816580 | 16816165 | ID=cds.MS.gene79403.t1;Parent=MS.gene79403.t1 |
| Gene Sequence |
| Protein sequence |
