Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057690.t1 | XP_013456461.1 | 98.4 | 512 | 8 | 0 | 1 | 512 | 1 | 512 | 2.30E-291 | 1010.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057690.t1 | Q38967 | 72.2 | 464 | 122 | 2 | 50 | 512 | 36 | 493 | 1.0e-199 | 697.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057690.t1 | A0A072ULC2 | 98.4 | 512 | 8 | 0 | 1 | 512 | 1 | 512 | 1.7e-291 | 1010.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene057690 | 0.833483 | 5.20E-56 | -1.69E-46 |
| MS.gene057690 | MS.gene063021 | 0.953201 | 4.62E-111 | -1.69E-46 |
| MS.gene057690 | MS.gene06367 | 0.841864 | 3.67E-58 | -1.69E-46 |
| MS.gene057690 | MS.gene069679 | 0.835308 | 1.81E-56 | -1.69E-46 |
| MS.gene057690 | MS.gene069680 | 0.803002 | 4.29E-49 | -1.69E-46 |
| MS.gene057690 | MS.gene069681 | 0.801882 | 7.30E-49 | -1.69E-46 |
| MS.gene057690 | MS.gene069682 | 0.814207 | 1.73E-51 | -1.69E-46 |
| MS.gene057690 | MS.gene073220 | 0.822892 | 1.86E-53 | -1.69E-46 |
| MS.gene057690 | MS.gene073446 | 0.807226 | 5.61E-50 | -1.69E-46 |
| MS.gene057690 | MS.gene074393 | -0.814201 | 1.74E-51 | -1.69E-46 |
| MS.gene057690 | MS.gene24772 | 0.830902 | 2.26E-55 | -1.69E-46 |
| MS.gene057690 | MS.gene25913 | -0.809486 | 1.85E-50 | -1.69E-46 |
| MS.gene057690 | MS.gene26693 | 0.824584 | 7.46E-54 | -1.69E-46 |
| MS.gene057690 | MS.gene27393 | 0.819535 | 1.10E-52 | -1.69E-46 |
| MS.gene057690 | MS.gene31609 | 0.809169 | 2.16E-50 | -1.69E-46 |
| MS.gene057690 | MS.gene40923 | 0.833892 | 4.11E-56 | -1.69E-46 |
| MS.gene057690 | MS.gene44055 | 0.800908 | 1.16E-48 | -1.69E-46 |
| MS.gene057690 | MS.gene68923 | 0.802917 | 4.47E-49 | -1.69E-46 |
| MS.gene057690 | MS.gene70586 | -0.813318 | 2.72E-51 | -1.69E-46 |
| MS.gene057690 | MS.gene78896 | 0.837181 | 6.05E-57 | -1.69E-46 |
| MS.gene057690 | MS.gene79403 | 0.817247 | 3.64E-52 | -1.69E-46 |
| MS.gene057690 | MS.gene81687 | 0.820406 | 6.98E-53 | -1.69E-46 |
| MS.gene057690 | MS.gene82222 | 0.81339 | 2.62E-51 | -1.69E-46 |
| MS.gene057690 | MS.gene83825 | 0.811984 | 5.33E-51 | -1.69E-46 |
| MS.gene057690 | MS.gene87637 | 0.820718 | 5.92E-53 | -1.69E-46 |
| MS.gene057690 | MS.gene87987 | 0.806892 | 6.60E-50 | -1.69E-46 |
| MS.gene057690 | MS.gene93505 | 0.818863 | 1.57E-52 | -1.69E-46 |
| MS.gene057690 | MS.gene93888 | 0.826807 | 2.22E-54 | -1.69E-46 |
| MS.gene057690 | MS.gene93890 | 0.836833 | 7.42E-57 | -1.69E-46 |
| MS.gene057690 | MS.gene94150 | 0.824349 | 8.47E-54 | -1.69E-46 |
| MS.gene057690 | MS.gene95744 | 0.834078 | 3.69E-56 | -1.69E-46 |
| MS.gene057690 | MS.gene98521 | 0.812488 | 4.13E-51 | -1.69E-46 |
| MS.gene057690 | MS.gene98522 | 0.827864 | 1.24E-54 | -1.69E-46 |
| MS.gene057690 | MS.gene99928 | 0.851062 | 1.13E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057690.t1 | MTR_4g073520 | 98.438 | 512 | 8 | 0 | 1 | 512 | 1 | 512 | 0.0 | 1045 |
| MS.gene057690.t1 | MTR_4g073520 | 98.586 | 495 | 7 | 0 | 18 | 512 | 18 | 512 | 0.0 | 1009 |
| MS.gene057690.t1 | MTR_8g094290 | 69.348 | 460 | 132 | 2 | 53 | 512 | 25 | 475 | 0.0 | 681 |
| MS.gene057690.t1 | MTR_1g029750 | 67.155 | 478 | 150 | 2 | 36 | 512 | 12 | 483 | 0.0 | 672 |
| MS.gene057690.t1 | MTR_3g088455 | 65.000 | 480 | 159 | 2 | 34 | 512 | 8 | 479 | 0.0 | 671 |
| MS.gene057690.t1 | MTR_3g088475 | 64.361 | 477 | 160 | 3 | 38 | 512 | 12 | 480 | 0.0 | 654 |
| MS.gene057690.t1 | MTR_3g096830 | 64.211 | 475 | 158 | 4 | 34 | 508 | 2 | 464 | 0.0 | 613 |
| MS.gene057690.t1 | MTR_3g096800 | 60.981 | 469 | 171 | 3 | 44 | 512 | 21 | 477 | 0.0 | 607 |
| MS.gene057690.t1 | MTR_3g096840 | 61.555 | 463 | 169 | 2 | 49 | 511 | 29 | 482 | 0.0 | 605 |
| MS.gene057690.t1 | MTR_3g110660 | 58.009 | 462 | 188 | 2 | 49 | 509 | 23 | 479 | 0.0 | 582 |
| MS.gene057690.t1 | MTR_1g007380 | 57.143 | 462 | 192 | 2 | 49 | 509 | 13 | 469 | 0.0 | 575 |
| MS.gene057690.t1 | MTR_1g105980 | 55.748 | 461 | 198 | 2 | 52 | 511 | 15 | 470 | 0.0 | 558 |
| MS.gene057690.t1 | MTR_1g105995 | 54.428 | 463 | 205 | 2 | 48 | 509 | 10 | 467 | 0.0 | 551 |
| MS.gene057690.t1 | MTR_1g105990 | 52.878 | 469 | 209 | 4 | 40 | 504 | 5 | 465 | 0.0 | 538 |
| MS.gene057690.t1 | MTR_1g106000 | 51.724 | 464 | 209 | 3 | 58 | 511 | 14 | 472 | 0.0 | 533 |
| MS.gene057690.t1 | MTR_3g088465 | 63.255 | 381 | 130 | 3 | 38 | 416 | 12 | 384 | 4.32e-179 | 509 |
| MS.gene057690.t1 | MTR_3g461440 | 50.333 | 451 | 216 | 1 | 49 | 499 | 13 | 455 | 1.18e-175 | 503 |
| MS.gene057690.t1 | MTR_3g461470 | 49.890 | 453 | 219 | 1 | 49 | 501 | 13 | 457 | 1.88e-173 | 497 |
| MS.gene057690.t1 | MTR_3g461430 | 50.787 | 445 | 211 | 1 | 56 | 500 | 27 | 463 | 9.80e-172 | 494 |
| MS.gene057690.t1 | MTR_3g061390 | 48.729 | 472 | 224 | 4 | 29 | 499 | 1 | 455 | 9.98e-172 | 492 |
| MS.gene057690.t1 | MTR_3g110420 | 49.254 | 469 | 232 | 2 | 40 | 508 | 5 | 467 | 1.32e-164 | 474 |
| MS.gene057690.t1 | MTR_5g096840 | 45.895 | 475 | 234 | 4 | 29 | 499 | 7 | 462 | 2.25e-162 | 469 |
| MS.gene057690.t1 | MTR_1g007270 | 48.125 | 480 | 235 | 5 | 30 | 509 | 5 | 470 | 2.18e-159 | 461 |
| MS.gene057690.t1 | MTR_3g461480 | 49.777 | 448 | 216 | 2 | 53 | 499 | 21 | 460 | 1.85e-156 | 454 |
| MS.gene057690.t1 | MTR_2g031750 | 46.070 | 458 | 237 | 4 | 52 | 508 | 5 | 453 | 6.05e-146 | 427 |
| MS.gene057690.t1 | MTR_1g007180 | 44.737 | 456 | 244 | 3 | 53 | 508 | 6 | 453 | 9.34e-146 | 426 |
| MS.gene057690.t1 | MTR_3g110660 | 60.308 | 325 | 123 | 2 | 49 | 372 | 23 | 342 | 9.33e-145 | 421 |
| MS.gene057690.t1 | MTR_1g007240 | 44.420 | 457 | 246 | 3 | 53 | 509 | 6 | 454 | 1.85e-144 | 423 |
| MS.gene057690.t1 | MTR_3g110430 | 43.922 | 510 | 261 | 5 | 3 | 508 | 14 | 502 | 3.36e-142 | 419 |
| MS.gene057690.t1 | MTR_5g096850 | 44.944 | 445 | 236 | 2 | 58 | 501 | 24 | 460 | 7.38e-140 | 411 |
| MS.gene057690.t1 | MTR_3g461440 | 49.846 | 325 | 155 | 1 | 175 | 499 | 2 | 318 | 3.52e-125 | 369 |
| MS.gene057690.t1 | MTR_2g031750 | 43.557 | 388 | 211 | 3 | 121 | 508 | 7 | 386 | 1.32e-112 | 339 |
| MS.gene057690.t1 | MTR_3g110420 | 49.850 | 333 | 162 | 1 | 40 | 372 | 5 | 332 | 1.51e-111 | 334 |
| MS.gene057690.t1 | MTR_5g017200 | 64.844 | 256 | 73 | 4 | 53 | 308 | 26 | 264 | 2.75e-108 | 323 |
| MS.gene057690.t1 | MTR_1g007180 | 41.176 | 306 | 172 | 3 | 203 | 508 | 72 | 369 | 1.07e-84 | 266 |
| MS.gene057690.t1 | MTR_6g022790 | 29.352 | 494 | 278 | 18 | 38 | 506 | 5 | 452 | 4.86e-51 | 181 |
| MS.gene057690.t1 | MTR_2g101920 | 28.081 | 495 | 310 | 12 | 17 | 505 | 3 | 457 | 2.49e-46 | 168 |
| MS.gene057690.t1 | MTR_8g080120 | 28.166 | 458 | 278 | 11 | 59 | 509 | 23 | 436 | 1.01e-45 | 166 |
| MS.gene057690.t1 | MTR_4g103890 | 28.700 | 446 | 263 | 14 | 70 | 506 | 21 | 420 | 5.26e-44 | 161 |
| MS.gene057690.t1 | MTR_6g023075 | 31.057 | 454 | 263 | 14 | 60 | 506 | 15 | 425 | 9.78e-44 | 160 |
| MS.gene057690.t1 | MTR_6g022780 | 31.278 | 454 | 262 | 14 | 60 | 506 | 15 | 425 | 9.98e-44 | 160 |
| MS.gene057690.t1 | MTR_1g007190 | 49.701 | 167 | 71 | 3 | 70 | 236 | 21 | 174 | 3.72e-41 | 147 |
| MS.gene057690.t1 | MTR_1g070470 | 27.140 | 479 | 296 | 14 | 36 | 508 | 6 | 437 | 4.21e-40 | 150 |
| MS.gene057690.t1 | MTR_2g096830 | 29.019 | 479 | 275 | 15 | 38 | 506 | 2 | 425 | 3.22e-38 | 145 |
| MS.gene057690.t1 | MTR_5g054730 | 29.202 | 476 | 275 | 17 | 40 | 505 | 12 | 435 | 7.67e-38 | 144 |
| MS.gene057690.t1 | MTR_7g038910 | 27.851 | 456 | 274 | 12 | 60 | 506 | 31 | 440 | 2.24e-36 | 140 |
| MS.gene057690.t1 | MTR_3g005740 | 28.634 | 454 | 277 | 9 | 60 | 506 | 53 | 466 | 5.12e-36 | 140 |
| MS.gene057690.t1 | MTR_6g023065 | 27.293 | 458 | 276 | 13 | 59 | 506 | 50 | 460 | 1.19e-35 | 139 |
| MS.gene057690.t1 | MTR_2g096830 | 30.226 | 354 | 202 | 11 | 38 | 383 | 2 | 318 | 7.53e-35 | 134 |
| MS.gene057690.t1 | MTR_7g038910 | 29.762 | 336 | 202 | 9 | 60 | 388 | 31 | 339 | 1.22e-34 | 134 |
| MS.gene057690.t1 | MTR_7g038910 | 29.762 | 336 | 202 | 9 | 60 | 388 | 31 | 339 | 2.95e-34 | 133 |
| MS.gene057690.t1 | MTR_3g085820 | 27.561 | 410 | 234 | 13 | 38 | 431 | 6 | 368 | 3.45e-33 | 130 |
| MS.gene057690.t1 | MTR_1g093020 | 26.096 | 479 | 297 | 14 | 33 | 506 | 8 | 434 | 3.86e-32 | 128 |
| MS.gene057690.t1 | MTR_1g093030 | 27.253 | 466 | 282 | 15 | 50 | 506 | 17 | 434 | 5.81e-32 | 127 |
| MS.gene057690.t1 | MTR_1g093020 | 26.517 | 445 | 274 | 12 | 33 | 474 | 8 | 402 | 1.36e-30 | 123 |
| MS.gene057690.t1 | MTR_4g055610 | 25.918 | 490 | 302 | 18 | 36 | 508 | 14 | 459 | 2.63e-30 | 123 |
| MS.gene057690.t1 | MTR_0531s0020 | 28.267 | 329 | 206 | 8 | 59 | 382 | 49 | 352 | 3.98e-30 | 121 |
| MS.gene057690.t1 | MTR_3g115090 | 25.055 | 451 | 291 | 14 | 60 | 499 | 85 | 499 | 4.51e-30 | 123 |
| MS.gene057690.t1 | MTR_1g492640 | 26.124 | 467 | 289 | 16 | 58 | 511 | 58 | 481 | 2.54e-28 | 118 |
| MS.gene057690.t1 | MTR_8g099320 | 24.736 | 473 | 302 | 17 | 53 | 511 | 18 | 450 | 6.12e-28 | 116 |
| MS.gene057690.t1 | MTR_4g075750 | 24.729 | 461 | 304 | 13 | 60 | 507 | 71 | 501 | 1.10e-25 | 110 |
| MS.gene057690.t1 | MTR_5g023260 | 25.054 | 459 | 286 | 17 | 59 | 501 | 107 | 523 | 2.29e-23 | 103 |
| MS.gene057690.t1 | MTR_5g081630 | 25.408 | 429 | 258 | 14 | 90 | 508 | 4 | 380 | 7.94e-21 | 94.7 |
| MS.gene057690.t1 | MTR_1g492640 | 26.478 | 389 | 231 | 15 | 136 | 511 | 3 | 349 | 5.35e-18 | 85.9 |
| MS.gene057690.t1 | MTR_3g069960 | 25.971 | 412 | 247 | 15 | 105 | 508 | 19 | 380 | 1.72e-16 | 81.6 |
| MS.gene057690.t1 | MTR_3g069960 | 25.971 | 412 | 247 | 15 | 105 | 508 | 72 | 433 | 2.32e-16 | 81.6 |
| MS.gene057690.t1 | MTR_2g012470 | 23.810 | 462 | 302 | 16 | 59 | 507 | 95 | 519 | 2.97e-15 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057690.t1 | AT5G09220 | 71.642 | 469 | 125 | 3 | 45 | 512 | 32 | 493 | 0.0 | 722 |
| MS.gene057690.t1 | AT5G63850 | 71.121 | 464 | 127 | 2 | 50 | 512 | 9 | 466 | 0.0 | 702 |
| MS.gene057690.t1 | AT1G77380 | 68.319 | 464 | 141 | 1 | 49 | 512 | 19 | 476 | 0.0 | 667 |
| MS.gene057690.t1 | AT1G44100 | 63.025 | 476 | 175 | 1 | 38 | 512 | 5 | 480 | 0.0 | 650 |
| MS.gene057690.t1 | AT1G10010 | 56.616 | 461 | 195 | 1 | 50 | 510 | 18 | 473 | 0.0 | 571 |
| MS.gene057690.t1 | AT1G10010 | 56.616 | 461 | 195 | 1 | 50 | 510 | 19 | 474 | 0.0 | 571 |
| MS.gene057690.t1 | AT5G49630 | 56.344 | 465 | 196 | 3 | 47 | 509 | 20 | 479 | 0.0 | 554 |
| MS.gene057690.t1 | AT1G58360 | 51.860 | 484 | 228 | 1 | 27 | 510 | 4 | 482 | 0.0 | 552 |
| MS.gene057690.t1 | AT5G23810 | 48.620 | 471 | 227 | 5 | 34 | 499 | 2 | 462 | 1.91e-146 | 428 |
| MS.gene057690.t1 | AT5G23810 | 50.432 | 347 | 159 | 4 | 34 | 377 | 2 | 338 | 1.14e-108 | 328 |
| MS.gene057690.t1 | AT5G23810 | 46.792 | 265 | 128 | 4 | 34 | 295 | 2 | 256 | 8.72e-71 | 227 |
| MS.gene057690.t1 | AT5G23810 | 46.919 | 211 | 107 | 3 | 34 | 241 | 2 | 210 | 4.40e-56 | 187 |
| MS.gene057690.t1 | AT5G23810 | 46.919 | 211 | 107 | 3 | 34 | 241 | 2 | 210 | 4.40e-56 | 187 |
| MS.gene057690.t1 | AT1G24400 | 27.066 | 484 | 296 | 10 | 36 | 508 | 3 | 440 | 1.29e-44 | 163 |
| MS.gene057690.t1 | AT5G40780 | 27.033 | 455 | 279 | 10 | 60 | 506 | 34 | 443 | 4.24e-43 | 159 |
| MS.gene057690.t1 | AT1G48640 | 26.653 | 484 | 306 | 12 | 33 | 509 | 12 | 453 | 7.08e-43 | 158 |
| MS.gene057690.t1 | AT3G01760 | 28.285 | 449 | 278 | 11 | 60 | 503 | 32 | 441 | 3.40e-40 | 151 |
| MS.gene057690.t1 | AT5G40780 | 27.273 | 440 | 267 | 11 | 75 | 506 | 1 | 395 | 5.22e-39 | 147 |
| MS.gene057690.t1 | AT5G40780 | 27.273 | 440 | 267 | 11 | 75 | 506 | 1 | 395 | 5.22e-39 | 147 |
| MS.gene057690.t1 | AT1G67640 | 27.692 | 455 | 280 | 11 | 60 | 508 | 29 | 440 | 3.13e-38 | 145 |
| MS.gene057690.t1 | AT1G61270 | 26.991 | 452 | 279 | 10 | 60 | 503 | 34 | 442 | 6.25e-38 | 145 |
| MS.gene057690.t1 | AT1G71680 | 26.585 | 489 | 291 | 12 | 38 | 508 | 9 | 447 | 2.06e-36 | 140 |
| MS.gene057690.t1 | AT1G25530 | 28.477 | 453 | 277 | 10 | 59 | 506 | 27 | 437 | 1.79e-32 | 129 |
| MS.gene057690.t1 | AT1G71680 | 27.945 | 365 | 212 | 11 | 38 | 384 | 9 | 340 | 2.05e-31 | 125 |
| MS.gene057690.t1 | AT1G08230 | 27.527 | 465 | 281 | 15 | 58 | 508 | 26 | 448 | 2.10e-28 | 118 |
| MS.gene057690.t1 | AT5G41800 | 24.255 | 470 | 295 | 16 | 58 | 511 | 25 | 449 | 2.31e-24 | 106 |
| MS.gene057690.t1 | AT2G36590 | 24.719 | 445 | 272 | 17 | 29 | 465 | 1 | 390 | 2.84e-19 | 90.9 |
| MS.gene057690.t1 | AT1G08230 | 30.800 | 250 | 140 | 9 | 270 | 508 | 102 | 329 | 2.22e-18 | 86.7 |
| MS.gene057690.t1 | AT1G08230 | 30.800 | 250 | 140 | 9 | 270 | 508 | 102 | 329 | 2.22e-18 | 86.7 |
| MS.gene057690.t1 | AT1G08230 | 30.800 | 250 | 140 | 9 | 270 | 508 | 102 | 329 | 2.22e-18 | 86.7 |
| MS.gene057690.t1 | AT1G08230 | 30.800 | 250 | 140 | 9 | 270 | 508 | 121 | 348 | 3.47e-18 | 86.7 |
| MS.gene057690.t1 | AT3G55740 | 25.000 | 492 | 296 | 22 | 30 | 508 | 5 | 436 | 4.14e-18 | 87.0 |
| MS.gene057690.t1 | AT2G39890 | 24.283 | 453 | 285 | 17 | 65 | 508 | 36 | 439 | 6.57e-18 | 86.7 |
| MS.gene057690.t1 | AT2G39890 | 24.283 | 453 | 285 | 17 | 65 | 508 | 36 | 439 | 6.57e-18 | 86.7 |
| MS.gene057690.t1 | AT3G55740 | 25.641 | 429 | 257 | 18 | 90 | 508 | 4 | 380 | 8.51e-18 | 85.9 |
| MS.gene057690.t1 | AT3G55740 | 25.641 | 429 | 257 | 18 | 90 | 508 | 4 | 380 | 8.51e-18 | 85.9 |
| MS.gene057690.t1 | AT2G39890 | 23.944 | 426 | 268 | 15 | 90 | 508 | 4 | 380 | 1.24e-17 | 85.1 |
| MS.gene057690.t1 | AT4G35180 | 23.992 | 471 | 293 | 12 | 32 | 482 | 24 | 449 | 1.10e-16 | 83.2 |
| MS.gene057690.t1 | AT1G47670 | 24.190 | 463 | 299 | 16 | 59 | 507 | 93 | 517 | 2.81e-13 | 72.4 |
| MS.gene057690.t1 | AT4G35180 | 25.392 | 319 | 202 | 7 | 32 | 338 | 24 | 318 | 7.91e-13 | 70.1 |
| MS.gene057690.t1 | AT2G36590 | 25.568 | 352 | 214 | 15 | 29 | 372 | 1 | 312 | 2.62e-11 | 65.5 |
Find 110 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGTCTCAGTTTGGATTT+TGG | 0.149290 | 4.4:-35611777 | None:intergenic |
| TTGAATTTCAATGAGGATAA+TGG | 0.220587 | 4.4:-35613267 | None:intergenic |
| TTCAGAAGGAGGAGACTTTA+AGG | 0.234915 | 4.4:-35613384 | None:intergenic |
| CTGGAGTGCTTTCATTGGCT+TGG | 0.244355 | 4.4:+35612037 | MS.gene057690:CDS |
| TTGGATTCTATAACCCTTAT+TGG | 0.244673 | 4.4:+35613531 | MS.gene057690:CDS |
| ATCCATTGCTGGAGTGGTTT+TGG | 0.246912 | 4.4:+35614380 | MS.gene057690:CDS |
| GTTGGAATACTTGGAGCTTT+TGG | 0.258162 | 4.4:+35614219 | MS.gene057690:CDS |
| GGACATGATAGCTGCAACTA+TGG | 0.263574 | 4.4:-35612975 | None:intergenic |
| CTAGGAAGTGTTCTACTTCT+TGG | 0.264874 | 4.4:-35611600 | None:intergenic |
| GCTGTCACAAAATTATTCTT+TGG | 0.273989 | 4.4:-35614069 | None:intergenic |
| ATTGGGTAATAAACTGTTAA+AGG | 0.276366 | 4.4:-35614249 | None:intergenic |
| ACTTATTCTGCAGTTGGATT+AGG | 0.281638 | 4.4:+35613001 | MS.gene057690:CDS |
| TCAATTTCTTCCGCCTAGTT+TGG | 0.288867 | 4.4:+35614133 | MS.gene057690:CDS |
| TGTGAAATATACATGTCTAT+TGG | 0.291402 | 4.4:-35614267 | None:intergenic |
| GTGAAATATACATGTCTATT+GGG | 0.296365 | 4.4:-35614266 | None:intergenic |
| TTGATCAAAGTCTGGGATTT+GGG | 0.299517 | 4.4:-35612939 | None:intergenic |
| AGAACAGATGACTCTGTTAA+TGG | 0.303497 | 4.4:+35612156 | MS.gene057690:CDS |
| GTTGTATTGCAGGAACATTT+TGG | 0.320701 | 4.4:+35611977 | MS.gene057690:intron |
| CTTGATCAAAGTCTGGGATT+TGG | 0.326018 | 4.4:-35612940 | None:intergenic |
| TGTTTCTTAGGGCAATTAAA+AGG | 0.327651 | 4.4:+35612822 | MS.gene057690:intron |
| TGGAGTGCTTTCATTGGCTT+GGG | 0.340533 | 4.4:+35612038 | MS.gene057690:CDS |
| GCAATGTCAAGAAGCCAATA+AGG | 0.342161 | 4.4:-35613545 | None:intergenic |
| GCAATTGTTGTGCACTTAGT+TGG | 0.345019 | 4.4:+35613575 | MS.gene057690:CDS |
| TGAACACAAGACCATGAAAA+AGG | 0.355176 | 4.4:+35613403 | MS.gene057690:CDS |
| TCACTGGCACACAGAAAATA+TGG | 0.358100 | 4.4:+35613198 | MS.gene057690:CDS |
| CAATTGTTGTGCACTTAGTT+GGG | 0.358372 | 4.4:+35613576 | MS.gene057690:CDS |
| CATATTATCACTGCTGTGAT+AGG | 0.360414 | 4.4:+35612012 | MS.gene057690:CDS |
| GATGCAGTAAAGTCTATCTT+AGG | 0.361901 | 4.4:+35612201 | MS.gene057690:CDS |
| CTGTGTGCCAGTGACTGTTC+CGG | 0.370439 | 4.4:-35613189 | None:intergenic |
| TATGCTTGAACCTGCAACTT+TGG | 0.370453 | 4.4:-35613035 | None:intergenic |
| GGCAATAGCTCAGCTTGGTT+GGG | 0.371439 | 4.4:+35612059 | MS.gene057690:CDS |
| TCCCAGACTTTGATCAAGTA+TGG | 0.373754 | 4.4:+35612945 | MS.gene057690:CDS |
| GGGCAATAGCTCAGCTTGGT+TGG | 0.375371 | 4.4:+35612058 | MS.gene057690:CDS |
| TATATTTCACAAAAGAAGAT+TGG | 0.376531 | 4.4:+35614279 | MS.gene057690:CDS |
| GCTGCTGTTGGATCCATTGC+TGG | 0.376547 | 4.4:+35614369 | MS.gene057690:CDS |
| CACCATACTTGATCAAAGTC+TGG | 0.378867 | 4.4:-35612947 | None:intergenic |
| AATGATGTGGTTGGAATACT+TGG | 0.380128 | 4.4:+35614210 | MS.gene057690:CDS |
| CTTGCACTTCAGATGCTTAG+TGG | 0.381924 | 4.4:+35614321 | MS.gene057690:CDS |
| CTAGGCATCGCCAAAGTTGC+AGG | 0.384071 | 4.4:+35613025 | MS.gene057690:CDS |
| AGGCTCTGGAGTGCTTTCAT+TGG | 0.387217 | 4.4:+35612032 | MS.gene057690:CDS |
| GTCGAAGCACTTGGAATAGT+TGG | 0.391776 | 4.4:-35611816 | None:intergenic |
| TCCTTCACTTATTCTGCAGT+TGG | 0.394941 | 4.4:+35612995 | MS.gene057690:CDS |
| ATTCAGTATGTGAATCTGTT+TGG | 0.402010 | 4.4:+35612341 | MS.gene057690:CDS |
| AGACTGATTCAGTCTCAGTT+TGG | 0.403667 | 4.4:-35611784 | None:intergenic |
| AAACCAGTCAAAAGATTTCC+AGG | 0.403962 | 4.4:-35613509 | None:intergenic |
| GCTCAGCTTGGTTGGGCTGT+TGG | 0.410253 | 4.4:+35612066 | MS.gene057690:CDS |
| GGCATGGGTTATGCAGCCTT+TGG | 0.414032 | 4.4:+35613476 | MS.gene057690:CDS |
| AATCTGTTTGGAATTGCAAT+TGG | 0.419799 | 4.4:+35612353 | MS.gene057690:CDS |
| CTTGGAATAGTTGGGCTCAA+TGG | 0.435400 | 4.4:-35611807 | None:intergenic |
| AAAATTTCAAGGAAGCTTGA+TGG | 0.436014 | 4.4:+35613139 | MS.gene057690:CDS |
| TCTGCAGTTGGATTAGGTCT+AGG | 0.439412 | 4.4:+35613007 | MS.gene057690:CDS |
| CTAGGCGGAAGAAATTGATT+TGG | 0.441852 | 4.4:-35614128 | None:intergenic |
| GTGCACAACAATTGCAAAGT+TGG | 0.444851 | 4.4:-35613567 | None:intergenic |
| ATTTCAATATTAGCTGCTGT+TGG | 0.447054 | 4.4:+35614357 | MS.gene057690:CDS |
| CAGCTAATATTGAAATGATC+AGG | 0.448358 | 4.4:-35614350 | None:intergenic |
| ACAGAAAATGGAAAATTTCA+AGG | 0.455737 | 4.4:+35613128 | MS.gene057690:intron |
| ATCACTGCTGTGATAGGCTC+TGG | 0.458270 | 4.4:+35612018 | MS.gene057690:CDS |
| TTCAATGAGGATAATGGAAA+AGG | 0.458924 | 4.4:-35613261 | None:intergenic |
| TGTATCCATTGCTTGACATA+TGG | 0.461416 | 4.4:-35612883 | None:intergenic |
| TTCATGGTCTTGTGTTCAGA+AGG | 0.465842 | 4.4:-35613398 | None:intergenic |
| TATTTACTATGTGGTGGCAT+GGG | 0.466716 | 4.4:+35613461 | MS.gene057690:CDS |
| CTATTTACTATGTGGTGGCA+TGG | 0.467141 | 4.4:+35613460 | MS.gene057690:CDS |
| GCACTTAGTTGGGGCATACC+AGG | 0.483844 | 4.4:+35613586 | MS.gene057690:CDS |
| GCCTTTGGAGATCATGTACC+TGG | 0.484040 | 4.4:+35613491 | MS.gene057690:CDS |
| AAATTTCAAGGAAGCTTGAT+GGG | 0.493759 | 4.4:+35613140 | MS.gene057690:CDS |
| TCGAAGCACTTGGAATAGTT+GGG | 0.495734 | 4.4:-35611815 | None:intergenic |
| GCGAAGAGAATCATGACAAC+AGG | 0.499921 | 4.4:-35612090 | None:intergenic |
| TGTTGGATCCATTGCTGGAG+TGG | 0.501226 | 4.4:+35614374 | MS.gene057690:CDS |
| CAATGTCAAGAAGCCAATAA+GGG | 0.505504 | 4.4:-35613544 | None:intergenic |
| GATGGTCGCCTCAAGAGAAC+AGG | 0.506003 | 4.4:+35611842 | MS.gene057690:CDS |
| GCTTGGGCAATAGCTCAGCT+TGG | 0.509406 | 4.4:+35612054 | MS.gene057690:CDS |
| ACACAAGCCGGAACAGTCAC+TGG | 0.511407 | 4.4:+35613182 | MS.gene057690:CDS |
| ACCATCGTCGTCGAAGCACT+TGG | 0.513005 | 4.4:-35611825 | None:intergenic |
| CACAAAAGAAGATTGGAAGA+TGG | 0.516110 | 4.4:+35614286 | MS.gene057690:CDS |
| TACACGCCAATGCAAGGAAT+AGG | 0.527950 | 4.4:-35614105 | None:intergenic |
| GGAGGAGTTTACAAGCTCTA+GGG | 0.530559 | 4.4:+35613219 | MS.gene057690:CDS |
| GAAATACCTATTCCTTGCAT+TGG | 0.530903 | 4.4:+35614099 | MS.gene057690:CDS |
| TGGAGGAGTTTACAAGCTCT+AGG | 0.533735 | 4.4:+35613218 | MS.gene057690:CDS |
| ATCCAAAACCACTCCAGCAA+TGG | 0.538718 | 4.4:-35614382 | None:intergenic |
| AGCTTGATGGGAATTAGCAT+TGG | 0.538971 | 4.4:+35613152 | MS.gene057690:CDS |
| AGAAGTGGAGTGCACGTAAG+TGG | 0.542626 | 4.4:+35614046 | MS.gene057690:CDS |
| ATTGGTGCGGTGACACAAGC+CGG | 0.545386 | 4.4:+35613170 | MS.gene057690:CDS |
| TTTCAGACACTACTTAGAAG+TGG | 0.545928 | 4.4:+35611745 | MS.gene057690:CDS |
| TTTACAAGCTCTAGGGGCAA+TGG | 0.553880 | 4.4:+35613226 | MS.gene057690:CDS |
| GAGGATAATGGAAAAGGAGT+AGG | 0.556091 | 4.4:-35613255 | None:intergenic |
| ACAGTGTTCTATTTACTATG+TGG | 0.563522 | 4.4:+35613452 | MS.gene057690:CDS |
| ATGGTCTTGTGTTCAGAAGG+AGG | 0.564496 | 4.4:-35613395 | None:intergenic |
| ATTTGGTACACGCCAATGCA+AGG | 0.565836 | 4.4:-35614111 | None:intergenic |
| ATGTTGAACCTGTTCTCTTG+AGG | 0.568328 | 4.4:-35611850 | None:intergenic |
| ACCATACTTGATCAAAGTCT+GGG | 0.568824 | 4.4:-35612946 | None:intergenic |
| AATTGTTGTGCACTTAGTTG+GGG | 0.569503 | 4.4:+35613577 | MS.gene057690:CDS |
| CCATGCCATATGTCAAGCAA+TGG | 0.571445 | 4.4:+35612878 | MS.gene057690:CDS |
| AATTGTTATCATGAGAGTCA+TGG | 0.575521 | 4.4:+35612848 | MS.gene057690:CDS |
| TCCAAGTGCTTCGACGACGA+TGG | 0.576041 | 4.4:+35611824 | MS.gene057690:CDS |
| ACTCCATGTTGAAATCTGCT+AGG | 0.577936 | 4.4:-35611618 | None:intergenic |
| CCATTGCTTGACATATGGCA+TGG | 0.582704 | 4.4:-35612878 | None:intergenic |
| TAATTACTTGAATTTCAATG+AGG | 0.589061 | 4.4:-35613274 | None:intergenic |
| GTGTTCTATTTACTATGTGG+TGG | 0.593769 | 4.4:+35613455 | MS.gene057690:CDS |
| AACTATGATGCTCACCAAAG+TGG | 0.602438 | 4.4:-35613426 | None:intergenic |
| TCCAACTGCAGAATAAGTGA+AGG | 0.609438 | 4.4:-35612996 | None:intergenic |
| TCCAGGTACATGATCTCCAA+AGG | 0.613687 | 4.4:-35613492 | None:intergenic |
| CTTCCTAGCAGATTTCAACA+TGG | 0.642728 | 4.4:+35611615 | MS.gene057690:CDS |
| GAGGAGTTTACAAGCTCTAG+GGG | 0.643999 | 4.4:+35613220 | MS.gene057690:CDS |
| AACTCACATCATACTAACTG+AGG | 0.651693 | 4.4:-35612390 | None:intergenic |
| TTCTATAACAGACAGAAGAG+AGG | 0.662581 | 4.4:+35611717 | MS.gene057690:intron |
| CAGACTTTGATCAAGTATGG+TGG | 0.668858 | 4.4:+35612948 | MS.gene057690:CDS |
| GATGGGAATTAGCATTGGTG+CGG | 0.687311 | 4.4:+35613157 | MS.gene057690:CDS |
| CTGGCACACAGAAAATATGG+AGG | 0.722683 | 4.4:+35613201 | MS.gene057690:CDS |
| AGAAGTGTAAAGATTGACGA+CGG | 0.735870 | 4.4:-35612112 | None:intergenic |
| AAAGTGTTCTCCAAACTAGG+CGG | 0.740781 | 4.4:-35614143 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAACAACTTATTTATA+TGG | - | chr4.4:35613755-35613774 | None:intergenic | 10.0% |
| !! | TATGAAAATTAATCATTTAA+GGG | + | chr4.4:35612684-35612703 | MS.gene057690:intron | 10.0% |
| !!! | TAAGTTGATTATTATAAAAA+CGG | - | chr4.4:35613629-35613648 | None:intergenic | 10.0% |
| !! | AATAAGATACAAATTATGTA+TGG | - | chr4.4:35613888-35613907 | None:intergenic | 15.0% |
| !! | AATGTTTAGTTGAAAAAAAT+TGG | + | chr4.4:35611873-35611892 | MS.gene057690:intron | 15.0% |
| !! | GTATGAAAATTAATCATTTA+AGG | + | chr4.4:35612683-35612702 | MS.gene057690:intron | 15.0% |
| !! | TTAGTTTATATTTAGAAGTT+GGG | - | chr4.4:35613947-35613966 | None:intergenic | 15.0% |
| !!! | ATTTTTATTTTTTTATCTGC+AGG | - | chr4.4:35611945-35611964 | None:intergenic | 15.0% |
| !!! | TTTAGTTTATATTTAGAAGT+TGG | - | chr4.4:35613948-35613967 | None:intergenic | 15.0% |
| !! | ACAACTTATTTATATGGAAA+CGG | - | chr4.4:35613749-35613768 | None:intergenic | 20.0% |
| !! | CAAAAACAAATCATCAATAT+AGG | - | chr4.4:35612791-35612810 | None:intergenic | 20.0% |
| !! | TAATTACTTGAATTTCAATG+AGG | - | chr4.4:35613277-35613296 | None:intergenic | 20.0% |
| !! | TATATTTCACAAAAGAAGAT+TGG | + | chr4.4:35614279-35614298 | MS.gene057690:CDS | 20.0% |
| !! | TTTCTATATTGTATTGTGTT+AGG | + | chr4.4:35613993-35614012 | MS.gene057690:intron | 20.0% |
| !!! | ATTTTTCATCATACAGAAAA+TGG | + | chr4.4:35613116-35613135 | MS.gene057690:intron | 20.0% |
| ! | ACAGAAAATGGAAAATTTCA+AGG | + | chr4.4:35613128-35613147 | MS.gene057690:intron | 25.0% |
| ! | AGCATATGACATTAGAATAT+TGG | - | chr4.4:35611664-35611683 | None:intergenic | 25.0% |
| ! | ATTGAAAAATGGTAATAGCA+TGG | - | chr4.4:35614193-35614212 | None:intergenic | 25.0% |
| ! | ATTGGGTAATAAACTGTTAA+AGG | - | chr4.4:35614252-35614271 | None:intergenic | 25.0% |
| ! | CATATCGAAAATTTGATCAA+TGG | + | chr4.4:35612653-35612672 | MS.gene057690:intron | 25.0% |
| ! | CTCAAAAGTTTGTATCTTAT+TGG | + | chr4.4:35613911-35613930 | MS.gene057690:intron | 25.0% |
| ! | GATACAAATTATGTATGGAT+TGG | - | chr4.4:35613883-35613902 | None:intergenic | 25.0% |
| ! | GTGAAATATACATGTCTATT+GGG | - | chr4.4:35614269-35614288 | None:intergenic | 25.0% |
| ! | TGTGAAATATACATGTCTAT+TGG | - | chr4.4:35614270-35614289 | None:intergenic | 25.0% |
| ! | TTCTCAACAAATGCAAAAAA+GGG | - | chr4.4:35614030-35614049 | None:intergenic | 25.0% |
| ! | TTGAATTTCAATGAGGATAA+TGG | - | chr4.4:35613270-35613289 | None:intergenic | 25.0% |
| !! | CATTGATCAAATTTTCGATA+TGG | - | chr4.4:35612655-35612674 | None:intergenic | 25.0% |
| !! | TATCAATCAGAATTTTCTTG+AGG | - | chr4.4:35612493-35612512 | None:intergenic | 25.0% |
| !! | TGATTTGCAAGACATTTATA+TGG | - | chr4.4:35612717-35612736 | None:intergenic | 25.0% |
| !!! | ATTACCATTTTTCAATGATG+TGG | + | chr4.4:35614197-35614216 | MS.gene057690:CDS | 25.0% |
| !!! | CACTTCAAACTTTAAAATTG+AGG | + | chr4.4:35611905-35611924 | MS.gene057690:intron | 25.0% |
| !!! | TTGATCATGTCATTGTTTTT+TGG | + | chr4.4:35612283-35612302 | MS.gene057690:intron | 25.0% |
| AAAATTTCAAGGAAGCTTGA+TGG | + | chr4.4:35613139-35613158 | MS.gene057690:CDS | 30.0% | |
| AAATTTCAAGGAAGCTTGAT+GGG | + | chr4.4:35613140-35613159 | MS.gene057690:CDS | 30.0% | |
| AATTGTTATCATGAGAGTCA+TGG | + | chr4.4:35612848-35612867 | MS.gene057690:CDS | 30.0% | |
| ACAGTGTTCTATTTACTATG+TGG | + | chr4.4:35613452-35613471 | MS.gene057690:CDS | 30.0% | |
| ACATGTAATGTAGTCATGTT+TGG | + | chr4.4:35612239-35612258 | MS.gene057690:intron | 30.0% | |
| ATAAACTGTATAAGCTCTTC+AGG | - | chr4.4:35613785-35613804 | None:intergenic | 30.0% | |
| ATTCAGTATGTGAATCTGTT+TGG | + | chr4.4:35612341-35612360 | MS.gene057690:CDS | 30.0% | |
| ATTTCAATATTAGCTGCTGT+TGG | + | chr4.4:35614357-35614376 | MS.gene057690:CDS | 30.0% | |
| CAGCTAATATTGAAATGATC+AGG | - | chr4.4:35614353-35614372 | None:intergenic | 30.0% | |
| CTTCTCAACAAATGCAAAAA+AGG | - | chr4.4:35614031-35614050 | None:intergenic | 30.0% | |
| GCTGTCACAAAATTATTCTT+TGG | - | chr4.4:35614072-35614091 | None:intergenic | 30.0% | |
| GGAAAAAAGTTCAAAATGTG+TGG | + | chr4.4:35612314-35612333 | MS.gene057690:CDS | 30.0% | |
| GTTATAGAATCCAAAATACC+TGG | - | chr4.4:35613607-35613626 | None:intergenic | 30.0% | |
| TAAGAGTTACACTACTTAGT+TGG | + | chr4.4:35612527-35612546 | MS.gene057690:intron | 30.0% | |
| TGTTTCTTAGGGCAATTAAA+AGG | + | chr4.4:35612822-35612841 | MS.gene057690:intron | 30.0% | |
| TTGGATTCTATAACCCTTAT+TGG | + | chr4.4:35613531-35613550 | MS.gene057690:CDS | 30.0% | |
| ! | AATCTGTTTGGAATTGCAAT+TGG | + | chr4.4:35612353-35612372 | MS.gene057690:CDS | 30.0% |
| !! | TTCAATGAGGATAATGGAAA+AGG | - | chr4.4:35613264-35613283 | None:intergenic | 30.0% |
| !! | TTTTTGCATTTGTTGAGAAG+TGG | + | chr4.4:35614031-35614050 | MS.gene057690:CDS | 30.0% |
| !!! | TGTCATTGTTTTTTGGTTTC+AGG | + | chr4.4:35612290-35612309 | MS.gene057690:intron | 30.0% |
| AAACCAGTCAAAAGATTTCC+AGG | - | chr4.4:35613512-35613531 | None:intergenic | 35.0% | |
| AAATGTCTTGCAAATCATCG+AGG | + | chr4.4:35612720-35612739 | MS.gene057690:intron | 35.0% | |
| AACTCACATCATACTAACTG+AGG | - | chr4.4:35612393-35612412 | None:intergenic | 35.0% | |
| AATGATGTGGTTGGAATACT+TGG | + | chr4.4:35614210-35614229 | MS.gene057690:CDS | 35.0% | |
| AATGTCTTGCAAATCATCGA+GGG | + | chr4.4:35612721-35612740 | MS.gene057690:intron | 35.0% | |
| AATTGTTGTGCACTTAGTTG+GGG | + | chr4.4:35613577-35613596 | MS.gene057690:CDS | 35.0% | |
| ACCATACTTGATCAAAGTCT+GGG | - | chr4.4:35612949-35612968 | None:intergenic | 35.0% | |
| ACCTTTGTGCATGTTTCTTA+GGG | + | chr4.4:35612811-35612830 | MS.gene057690:intron | 35.0% | |
| ACTTATTCTGCAGTTGGATT+AGG | + | chr4.4:35613001-35613020 | MS.gene057690:CDS | 35.0% | |
| AGAACAGATGACTCTGTTAA+TGG | + | chr4.4:35612156-35612175 | MS.gene057690:CDS | 35.0% | |
| AGAATCAACTGTTGTATTGC+AGG | + | chr4.4:35611967-35611986 | MS.gene057690:intron | 35.0% | |
| CAATGTCAAGAAGCCAATAA+GGG | - | chr4.4:35613547-35613566 | None:intergenic | 35.0% | |
| CAATTGTTGTGCACTTAGTT+GGG | + | chr4.4:35613576-35613595 | MS.gene057690:CDS | 35.0% | |
| CACAAAAGAAGATTGGAAGA+TGG | + | chr4.4:35614286-35614305 | MS.gene057690:CDS | 35.0% | |
| CATATTATCACTGCTGTGAT+AGG | + | chr4.4:35612012-35612031 | MS.gene057690:CDS | 35.0% | |
| CCAACCACATCATTGAAAAA+TGG | - | chr4.4:35614204-35614223 | None:intergenic | 35.0% | |
| CTACTCAAAGTATGCTAGTT+TGG | - | chr4.4:35612617-35612636 | None:intergenic | 35.0% | |
| GAAATACCTATTCCTTGCAT+TGG | + | chr4.4:35614099-35614118 | MS.gene057690:CDS | 35.0% | |
| GATGCAGTAAAGTCTATCTT+AGG | + | chr4.4:35612201-35612220 | MS.gene057690:CDS | 35.0% | |
| GTGTTCTATTTACTATGTGG+TGG | + | chr4.4:35613455-35613474 | MS.gene057690:CDS | 35.0% | |
| GTTTGAATTATACGCATCTG+CGG | - | chr4.4:35612755-35612774 | None:intergenic | 35.0% | |
| TATTTACTATGTGGTGGCAT+GGG | + | chr4.4:35613461-35613480 | MS.gene057690:CDS | 35.0% | |
| TGAACACAAGACCATGAAAA+AGG | + | chr4.4:35613403-35613422 | MS.gene057690:CDS | 35.0% | |
| TGTATCCATTGCTTGACATA+TGG | - | chr4.4:35612886-35612905 | None:intergenic | 35.0% | |
| TTCTATAACAGACAGAAGAG+AGG | + | chr4.4:35611717-35611736 | MS.gene057690:intron | 35.0% | |
| TTTCAGACACTACTTAGAAG+TGG | + | chr4.4:35611745-35611764 | MS.gene057690:CDS | 35.0% | |
| ! | AGAAGTGTAAAGATTGACGA+CGG | - | chr4.4:35612115-35612134 | None:intergenic | 35.0% |
| ! | GTTGTATTGCAGGAACATTT+TGG | + | chr4.4:35611977-35611996 | MS.gene057690:intron | 35.0% |
| ! | TCAGTCTCAGTTTGGATTTT+GGG | - | chr4.4:35611779-35611798 | None:intergenic | 35.0% |
| ! | TTCAGTCTCAGTTTGGATTT+TGG | - | chr4.4:35611780-35611799 | None:intergenic | 35.0% |
| ! | TTGATCAAAGTCTGGGATTT+GGG | - | chr4.4:35612942-35612961 | None:intergenic | 35.0% |
| ! | TTGGAATACTTGGAGCTTTT+GGG | + | chr4.4:35614220-35614239 | MS.gene057690:CDS | 35.0% |
| !! | CAAAAAGTGTTCTCCAAACT+AGG | - | chr4.4:35614149-35614168 | None:intergenic | 35.0% |
| !! | CCATTTTTCAATGATGTGGT+TGG | + | chr4.4:35614201-35614220 | MS.gene057690:CDS | 35.0% |
| !! | TTGGAAGATGGACTAAAAAG+TGG | + | chr4.4:35614298-35614317 | MS.gene057690:CDS | 35.0% |
| !!! | AAGCATGTTTGTTTTGTTGC+AGG | + | chr4.4:35613358-35613377 | MS.gene057690:intron | 35.0% |
| !!! | CATTGTTTTTTGGTTTCAGG+AGG | + | chr4.4:35612293-35612312 | MS.gene057690:intron | 35.0% |
| !!! | GGAAATCTTTTGACTGGTTT+TGG | + | chr4.4:35613512-35613531 | MS.gene057690:CDS | 35.0% |
| AACTATGATGCTCACCAAAG+TGG | - | chr4.4:35613429-35613448 | None:intergenic | 40.0% | |
| ACTCCATGTTGAAATCTGCT+AGG | - | chr4.4:35611621-35611640 | None:intergenic | 40.0% | |
| AGCTTGATGGGAATTAGCAT+TGG | + | chr4.4:35613152-35613171 | MS.gene057690:CDS | 40.0% | |
| ATGTTGAACCTGTTCTCTTG+AGG | - | chr4.4:35611853-35611872 | None:intergenic | 40.0% | |
| CACCATACTTGATCAAAGTC+TGG | - | chr4.4:35612950-35612969 | None:intergenic | 40.0% | |
| CAGACTTTGATCAAGTATGG+TGG | + | chr4.4:35612948-35612967 | MS.gene057690:CDS | 40.0% | |
| CTAGGCGGAAGAAATTGATT+TGG | - | chr4.4:35614131-35614150 | None:intergenic | 40.0% | |
| CTATTTACTATGTGGTGGCA+TGG | + | chr4.4:35613460-35613479 | MS.gene057690:CDS | 40.0% | |
| CTTCCTAGCAGATTTCAACA+TGG | + | chr4.4:35611615-35611634 | MS.gene057690:CDS | 40.0% | |
| CTTTGAGTAGATAAGCAGCT+CGG | + | chr4.4:35612627-35612646 | MS.gene057690:intron | 40.0% | |
| GACCTTTGTGCATGTTTCTT+AGG | + | chr4.4:35612810-35612829 | MS.gene057690:intron | 40.0% | |
| GCAATGTCAAGAAGCCAATA+AGG | - | chr4.4:35613548-35613567 | None:intergenic | 40.0% | |
| GCAATTGTTGTGCACTTAGT+TGG | + | chr4.4:35613575-35613594 | MS.gene057690:CDS | 40.0% | |
| GTGCACAACAATTGCAAAGT+TGG | - | chr4.4:35613570-35613589 | None:intergenic | 40.0% | |
| TATGCTTGAACCTGCAACTT+TGG | - | chr4.4:35613038-35613057 | None:intergenic | 40.0% | |
| TCAATTTCTTCCGCCTAGTT+TGG | + | chr4.4:35614133-35614152 | MS.gene057690:CDS | 40.0% | |
| TCACTGGCACACAGAAAATA+TGG | + | chr4.4:35613198-35613217 | MS.gene057690:CDS | 40.0% | |
| TCCAACTGCAGAATAAGTGA+AGG | - | chr4.4:35612999-35613018 | None:intergenic | 40.0% | |
| TCCCAGACTTTGATCAAGTA+TGG | + | chr4.4:35612945-35612964 | MS.gene057690:CDS | 40.0% | |
| TCCTTCACTTATTCTGCAGT+TGG | + | chr4.4:35612995-35613014 | MS.gene057690:CDS | 40.0% | |
| TTCAGAAGGAGGAGACTTTA+AGG | - | chr4.4:35613387-35613406 | None:intergenic | 40.0% | |
| TTTGAGTAGATAAGCAGCTC+GGG | + | chr4.4:35612628-35612647 | MS.gene057690:intron | 40.0% | |
| ! | AAAGTGTTCTCCAAACTAGG+CGG | - | chr4.4:35614146-35614165 | None:intergenic | 40.0% |
| ! | AGACTGATTCAGTCTCAGTT+TGG | - | chr4.4:35611787-35611806 | None:intergenic | 40.0% |
| ! | CTTGATCAAAGTCTGGGATT+TGG | - | chr4.4:35612943-35612962 | None:intergenic | 40.0% |
| ! | GTACCTGGAAATCTTTTGAC+TGG | + | chr4.4:35613506-35613525 | MS.gene057690:CDS | 40.0% |
| ! | GTTGGAATACTTGGAGCTTT+TGG | + | chr4.4:35614219-35614238 | MS.gene057690:CDS | 40.0% |
| ! | TCGAAGCACTTGGAATAGTT+GGG | - | chr4.4:35611818-35611837 | None:intergenic | 40.0% |
| !! | CTAGGAAGTGTTCTACTTCT+TGG | - | chr4.4:35611603-35611622 | None:intergenic | 40.0% |
| !! | GAGGATAATGGAAAAGGAGT+AGG | - | chr4.4:35613258-35613277 | None:intergenic | 40.0% |
| !! | TTCATGGTCTTGTGTTCAGA+AGG | - | chr4.4:35613401-35613420 | None:intergenic | 40.0% |
| !!! | TACTTGGAGCTTTTGGGTTT+TGG | + | chr4.4:35614226-35614245 | MS.gene057690:CDS | 40.0% |
| ATCCAAAACCACTCCAGCAA+TGG | - | chr4.4:35614385-35614404 | None:intergenic | 45.0% | |
| ATTTGGTACACGCCAATGCA+AGG | - | chr4.4:35614114-35614133 | None:intergenic | 45.0% | |
| CCATGCCATATGTCAAGCAA+TGG | + | chr4.4:35612878-35612897 | MS.gene057690:CDS | 45.0% | |
| CCATTGCTTGACATATGGCA+TGG | - | chr4.4:35612881-35612900 | None:intergenic | 45.0% | |
| CTGGCACACAGAAAATATGG+AGG | + | chr4.4:35613201-35613220 | MS.gene057690:CDS | 45.0% | |
| CTTGCACTTCAGATGCTTAG+TGG | + | chr4.4:35614321-35614340 | MS.gene057690:CDS | 45.0% | |
| CTTGGAATAGTTGGGCTCAA+TGG | - | chr4.4:35611810-35611829 | None:intergenic | 45.0% | |
| GACCATGAAAAAGGCCACTT+TGG | + | chr4.4:35613412-35613431 | MS.gene057690:CDS | 45.0% | |
| GCCCTAAGAAACATGCACAA+AGG | - | chr4.4:35612815-35612834 | None:intergenic | 45.0% | |
| GCGAAGAGAATCATGACAAC+AGG | - | chr4.4:35612093-35612112 | None:intergenic | 45.0% | |
| GGACATGATAGCTGCAACTA+TGG | - | chr4.4:35612978-35612997 | None:intergenic | 45.0% | |
| GGAGGAGTTTACAAGCTCTA+GGG | + | chr4.4:35613219-35613238 | MS.gene057690:CDS | 45.0% | |
| TACACGCCAATGCAAGGAAT+AGG | - | chr4.4:35614108-35614127 | None:intergenic | 45.0% | |
| TCCAGGTACATGATCTCCAA+AGG | - | chr4.4:35613495-35613514 | None:intergenic | 45.0% | |
| TGGAGGAGTTTACAAGCTCT+AGG | + | chr4.4:35613218-35613237 | MS.gene057690:CDS | 45.0% | |
| ! | ATCCATTGCTGGAGTGGTTT+TGG | + | chr4.4:35614380-35614399 | MS.gene057690:CDS | 45.0% |
| ! | GAGGAGTTTACAAGCTCTAG+GGG | + | chr4.4:35613220-35613239 | MS.gene057690:CDS | 45.0% |
| ! | GTCGAAGCACTTGGAATAGT+TGG | - | chr4.4:35611819-35611838 | None:intergenic | 45.0% |
| ! | TCTGCAGTTGGATTAGGTCT+AGG | + | chr4.4:35613007-35613026 | MS.gene057690:CDS | 45.0% |
| ! | TTGGGGCATACCAGGTATTT+TGG | + | chr4.4:35613594-35613613 | MS.gene057690:intron | 45.0% |
| !! | ATGGTCTTGTGTTCAGAAGG+AGG | - | chr4.4:35613398-35613417 | None:intergenic | 45.0% |
| !! | CACCAAAGTGGCCTTTTTCA+TGG | - | chr4.4:35613417-35613436 | None:intergenic | 45.0% |
| !! | GATGGGAATTAGCATTGGTG+CGG | + | chr4.4:35613157-35613176 | MS.gene057690:CDS | 45.0% |
| !! | TGGAGTGCTTTCATTGGCTT+GGG | + | chr4.4:35612038-35612057 | MS.gene057690:CDS | 45.0% |
| !! | TTTACAAGCTCTAGGGGCAA+TGG | + | chr4.4:35613226-35613245 | MS.gene057690:CDS | 45.0% |
| AGAAGTGGAGTGCACGTAAG+TGG | + | chr4.4:35614046-35614065 | MS.gene057690:CDS | 50.0% | |
| ATCACTGCTGTGATAGGCTC+TGG | + | chr4.4:35612018-35612037 | MS.gene057690:CDS | 50.0% | |
| GGCAATAGCTCAGCTTGGTT+GGG | + | chr4.4:35612059-35612078 | MS.gene057690:CDS | 50.0% | |
| TGTTGGATCCATTGCTGGAG+TGG | + | chr4.4:35614374-35614393 | MS.gene057690:CDS | 50.0% | |
| ! | CTGGAGTGCTTTCATTGGCT+TGG | + | chr4.4:35612037-35612056 | MS.gene057690:CDS | 50.0% |
| ! | GCCTTTGGAGATCATGTACC+TGG | + | chr4.4:35613491-35613510 | MS.gene057690:CDS | 50.0% |
| !! | AGGCTCTGGAGTGCTTTCAT+TGG | + | chr4.4:35612032-35612051 | MS.gene057690:CDS | 50.0% |
| ACACAAGCCGGAACAGTCAC+TGG | + | chr4.4:35613182-35613201 | MS.gene057690:CDS | 55.0% | |
| ATTGGTGCGGTGACACAAGC+CGG | + | chr4.4:35613170-35613189 | MS.gene057690:CDS | 55.0% | |
| CTGTGTGCCAGTGACTGTTC+CGG | - | chr4.4:35613192-35613211 | None:intergenic | 55.0% | |
| GATGGTCGCCTCAAGAGAAC+AGG | + | chr4.4:35611842-35611861 | MS.gene057690:CDS | 55.0% | |
| GCACTTAGTTGGGGCATACC+AGG | + | chr4.4:35613586-35613605 | MS.gene057690:CDS | 55.0% | |
| GCTGCTGTTGGATCCATTGC+TGG | + | chr4.4:35614369-35614388 | MS.gene057690:CDS | 55.0% | |
| GCTTGGGCAATAGCTCAGCT+TGG | + | chr4.4:35612054-35612073 | MS.gene057690:CDS | 55.0% | |
| GGGCAATAGCTCAGCTTGGT+TGG | + | chr4.4:35612058-35612077 | MS.gene057690:CDS | 55.0% | |
| TCCAAGTGCTTCGACGACGA+TGG | + | chr4.4:35611824-35611843 | MS.gene057690:CDS | 55.0% | |
| ! | ACCATCGTCGTCGAAGCACT+TGG | - | chr4.4:35611828-35611847 | None:intergenic | 55.0% |
| ! | CTAGGCATCGCCAAAGTTGC+AGG | + | chr4.4:35613025-35613044 | MS.gene057690:CDS | 55.0% |
| ! | GGCATGGGTTATGCAGCCTT+TGG | + | chr4.4:35613476-35613495 | MS.gene057690:CDS | 55.0% |
| GCTCAGCTTGGTTGGGCTGT+TGG | + | chr4.4:35612066-35612085 | MS.gene057690:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 35611594 | 35614440 | 35611594 | ID=MS.gene057690 |
| chr4.4 | mRNA | 35611594 | 35614440 | 35611594 | ID=MS.gene057690.t1;Parent=MS.gene057690 |
| chr4.4 | exon | 35611594 | 35611641 | 35611594 | ID=MS.gene057690.t1.exon1;Parent=MS.gene057690.t1 |
| chr4.4 | CDS | 35611594 | 35611641 | 35611594 | ID=cds.MS.gene057690.t1;Parent=MS.gene057690.t1 |
| chr4.4 | exon | 35611728 | 35611863 | 35611728 | ID=MS.gene057690.t1.exon2;Parent=MS.gene057690.t1 |
| chr4.4 | CDS | 35611728 | 35611863 | 35611728 | ID=cds.MS.gene057690.t1;Parent=MS.gene057690.t1 |
| chr4.4 | exon | 35611989 | 35612222 | 35611989 | ID=MS.gene057690.t1.exon3;Parent=MS.gene057690.t1 |
| chr4.4 | CDS | 35611989 | 35612222 | 35611989 | ID=cds.MS.gene057690.t1;Parent=MS.gene057690.t1 |
| chr4.4 | exon | 35612312 | 35612405 | 35612312 | ID=MS.gene057690.t1.exon4;Parent=MS.gene057690.t1 |
| chr4.4 | CDS | 35612312 | 35612405 | 35612312 | ID=cds.MS.gene057690.t1;Parent=MS.gene057690.t1 |
| chr4.4 | exon | 35612832 | 35613046 | 35612832 | ID=MS.gene057690.t1.exon5;Parent=MS.gene057690.t1 |
| chr4.4 | CDS | 35612832 | 35613046 | 35612832 | ID=cds.MS.gene057690.t1;Parent=MS.gene057690.t1 |
| chr4.4 | exon | 35613132 | 35613289 | 35613132 | ID=MS.gene057690.t1.exon6;Parent=MS.gene057690.t1 |
| chr4.4 | CDS | 35613132 | 35613289 | 35613132 | ID=cds.MS.gene057690.t1;Parent=MS.gene057690.t1 |
| chr4.4 | exon | 35613380 | 35613607 | 35613380 | ID=MS.gene057690.t1.exon7;Parent=MS.gene057690.t1 |
| chr4.4 | CDS | 35613380 | 35613607 | 35613380 | ID=cds.MS.gene057690.t1;Parent=MS.gene057690.t1 |
| chr4.4 | exon | 35614015 | 35614440 | 35614015 | ID=MS.gene057690.t1.exon8;Parent=MS.gene057690.t1 |
| chr4.4 | CDS | 35614015 | 35614440 | 35614015 | ID=cds.MS.gene057690.t1;Parent=MS.gene057690.t1 |
| Gene Sequence |
| Protein sequence |
