AlfalfaGEDB | MS.gene79586

M. sativa cultivar XinJiangDaYe / MS.gene79586

KEGG: K20547
GO: GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005975 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0016798 GO:0016998 GO:0017144 GO:0042737 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0046348 GO:0071704 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575
PFAM: PF00182.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79586.t1	PNY07089.1	58.5	200	71	4	39	235	53	243	2.00E-59	239.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79586.t1	P21226	54.6	205	81	4	34	235	46	241	7.0e-58	225.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79586.t1	A0A2K3NVM5	58.5	200	71	4	39	235	53	243	1.4e-59	239.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05240	MS.gene79586	0.800247	1.58E-48	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79586.t1	MTR_3g118390	59.893	187	65	3	39	222	111	290	9.75e-73	226
MS.gene79586.t1	MTR_8g074350	50.811	185	81	4	39	215	54	236	1.75e-55	180
MS.gene79586.t1	MTR_8g074330	48.925	186	84	4	39	215	53	236	3.32e-52	172
MS.gene79586.t1	MTR_8g074335	45.213	188	77	3	39	215	53	225	1.58e-44	151
MS.gene79586.t1	MTR_7g110780	42.683	164	89	3	63	222	39	201	7.94e-41	141
MS.gene79586.t1	MTR_2g099470	36.364	198	110	5	39	231	56	242	9.18e-34	123
MS.gene79586.t1	MTR_2g099465	35.928	167	94	3	51	215	42	197	7.99e-32	117
MS.gene79586.t1	MTR_2g034680	34.177	158	95	5	69	219	65	220	3.59e-23	95.9
MS.gene79586.t1	MTR_1g105535	32.653	196	113	6	47	235	59	242	9.02e-23	94.7
MS.gene79586.t1	MTR_7g021640	32.143	196	114	6	47	235	56	239	4.63e-22	92.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79586.t1	AT3G12500	57.609	184	74	2	42	222	68	250	6.27e-67	210
MS.gene79586.t1	AT4G01700	44.512	164	86	3	63	222	41	203	3.17e-45	152
MS.gene79586.t1	AT1G02360	41.566	166	92	3	61	222	31	195	2.07e-40	140
MS.gene79586.t1	AT1G02360	41.566	166	92	3	61	222	77	241	5.10e-40	140
MS.gene79586.t1	AT1G02360	41.566	166	92	3	61	222	83	247	5.42e-40	140
MS.gene79586.t1	AT3G54420	37.949	195	106	4	39	231	52	233	7.64e-38	133
MS.gene79586.t1	AT2G43590	35.025	197	107	7	39	232	48	226	1.83e-36	129
MS.gene79586.t1	AT2G43580	34.184	196	111	6	39	232	48	227	2.88e-34	124
MS.gene79586.t1	AT2G43620	35.266	207	103	6	39	231	55	244	3.54e-33	121
MS.gene79586.t1	AT2G43610	34.634	205	105	5	39	231	55	242	6.83e-32	118
MS.gene79586.t1	AT2G43570	36.517	178	99	5	39	214	55	220	1.08e-29	112
MS.gene79586.t1	AT1G56680	38.554	166	84	6	56	220	80	228	2.07e-27	106
MS.gene79586.t1	AT1G56680	39.375	160	79	6	56	214	103	245	2.66e-27	106
MS.gene79586.t1	AT2G43600	36.145	166	87	5	56	220	76	223	4.99e-25	100
MS.gene79586.t1	AT2G43600	36.145	166	87	5	56	220	97	244	6.40e-25	100
MS.gene79586.t1	AT1G05850	35.065	154	92	4	69	215	69	221	1.94e-23	96.7
MS.gene79586.t1	AT1G05850	35.065	154	92	4	69	215	69	221	1.94e-23	96.7
MS.gene79586.t1	AT3G16920	32.278	158	98	5	69	219	77	232	6.37e-21	89.7
MS.gene79586.t1	AT3G16920	32.278	158	98	5	69	219	101	256	8.48e-21	89.7
MS.gene79586.t1	AT3G47540	25.568	176	101	7	63	236	33	180	9.88e-12	62.8
MS.gene79586.t1	AT3G47540	25.568	176	101	7	63	236	33	180	3.73e-11	62.0

Find 76 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGTAGTACTATTACTATTAT+TGG	0.142912	7.3:+87528986	None:intergenic
GTCTCCTTCGTTGCCGAACC+TGG	0.245191	7.3:+87528652	None:intergenic
TTGTCTGCCCAACACCTTCC+TGG	0.285066	7.3:+87528950	None:intergenic
TCAAGAGTGCTATATGGTTT+TGG	0.289569	7.3:-87528331	MS.gene79586:CDS
TCTAAATTTCCATGTGTTCC+TGG	0.293914	7.3:-87528482	MS.gene79586:CDS
ATCAAAGGGAATAAAATATA+TGG	0.311345	7.3:-87528428	MS.gene79586:CDS
GGAGAATGTGGAAGTATAAT+AGG	0.323922	7.3:-87528407	MS.gene79586:CDS
AAAGAAATATCCCCGGTCAT+AGG	0.328899	7.3:+87528550	None:intergenic
GCCGAACCTGGGGAATGTTT+TGG	0.339992	7.3:+87528664	None:intergenic
TTCACAAAGGATGGGGAGAT+TGG	0.341429	7.3:-87529029	MS.gene79586:CDS
CTATTACTATTATTGGAAAC+TGG	0.346283	7.3:+87528993	None:intergenic
GGGTCTGTGGCAATGAGATC+TGG	0.352495	7.3:+87528365	None:intergenic
GAGATGAGGTACTCCTCTTC+TGG	0.355985	7.3:+87528779	None:intergenic
GCACTCTTGAAGGATATAAC+AGG	0.377927	7.3:+87528344	None:intergenic
AAGAAATATCCCCGGTCATA+GGG	0.408514	7.3:+87528551	None:intergenic
GGCTGGAAGGAATGCGCGAC+CGG	0.412108	7.3:-87528170	MS.gene79586:CDS
GGAATGCGCGACCGGGTGGC+TGG	0.413441	7.3:-87528162	MS.gene79586:CDS
TATCCTTCAAGAGTGCTATA+TGG	0.418078	7.3:-87528337	MS.gene79586:CDS
AAACCATATAGCACTCTTGA+AGG	0.434167	7.3:+87528334	None:intergenic
TACTCCTCTTCTGGAGTTGG+AGG	0.437560	7.3:+87528788	None:intergenic
TCACAAAGGATGGGGAGATT+GGG	0.445926	7.3:-87529028	MS.gene79586:CDS
TCTCCTTCGTTGCCGAACCT+GGG	0.454761	7.3:+87528653	None:intergenic
TCCTCTTCTGGAGTTGGAGG+AGG	0.455180	7.3:+87528791	None:intergenic
GCCAAAACATTCCCCAGGTT+CGG	0.455985	7.3:-87528665	MS.gene79586:CDS
CTAAATTTCCATGTGTTCCT+GGG	0.462737	7.3:-87528481	MS.gene79586:CDS
ACACATGGAAATTTAGAGCT+TGG	0.463623	7.3:+87528488	None:intergenic
CACCTCTTAGCCCCTATGAC+CGG	0.464103	7.3:-87528562	MS.gene79586:CDS
TTCGCAGTAGTCTTCTTCGA+TGG	0.468797	7.3:+87528511	None:intergenic
TCTTCTGGAGTTGGAGGAGG+AGG	0.473569	7.3:+87528794	None:intergenic
CTCTCGTAGTATTGCTTCCC+AGG	0.474080	7.3:+87528464	None:intergenic
ACCTCTTAGCCCCTATGACC+GGG	0.474353	7.3:-87528561	MS.gene79586:CDS
CAAGATGGCTTTACTTGGAA+AGG	0.479312	7.3:+87528287	None:intergenic
TCGCAGTAGTCTTCTTCGAT+GGG	0.491948	7.3:+87528512	None:intergenic
CCCCGGTCATAGGGGCTAAG+AGG	0.498386	7.3:+87528560	None:intergenic
AAGATGGCTTTACTTGGAAA+GGG	0.503243	7.3:+87528288	None:intergenic
AGGTACTCCTCTTCTGGAGT+TGG	0.512780	7.3:+87528785	None:intergenic
TTATTCCCTTTGATCTGAAG+CGG	0.516176	7.3:+87528437	None:intergenic
AATAAAATATATGGAGAATG+TGG	0.517331	7.3:-87528419	MS.gene79586:CDS
AGGGGTCCGCTTCAGATCAA+AGG	0.525246	7.3:-87528443	MS.gene79586:CDS
GGAGTACCTCATCTCGAGAA+AGG	0.539110	7.3:-87528771	MS.gene79586:CDS
GGCTTTACTTGGAAAGGGAA+AGG	0.540330	7.3:+87528293	None:intergenic
TCCTCCTCCAACTCCAGAAG+AGG	0.540418	7.3:-87528792	MS.gene79586:CDS
GGTCTGTGGCAATGAGATCT+GGG	0.547304	7.3:+87528366	None:intergenic
CCACATATGTCATAGAAGGC+TGG	0.554306	7.3:-87528187	MS.gene79586:intron
ACTTGGAAAGGGAAAGGTGG+AGG	0.555116	7.3:+87528299	None:intergenic
GGGGTCCGCTTCAGATCAAA+GGG	0.557701	7.3:-87528442	MS.gene79586:CDS
ACCGACCACTAGTGCGGCGA+GGG	0.561648	7.3:-87528848	MS.gene79586:intron
AAGCTGCCAAAACATTCCCC+AGG	0.566465	7.3:-87528670	MS.gene79586:CDS
CTCGTTTACATCCAGCCACC+CGG	0.571779	7.3:+87528151	None:intergenic
GATGATGAGTGTGAGGGGAA+AGG	0.572756	7.3:-87528719	MS.gene79586:CDS
GCTGGAAGGAATGCGCGACC+GGG	0.573064	7.3:-87528169	MS.gene79586:CDS
AGCTCTCACAAAACAAGAGG+TGG	0.574719	7.3:-87528587	MS.gene79586:CDS
GGAAGGAATGCGCGACCGGG+TGG	0.575460	7.3:-87528166	MS.gene79586:CDS
CTCCTTCGTTGCCGAACCTG+GGG	0.576604	7.3:+87528654	None:intergenic
TATTGCTTCCCAGGAACACA+TGG	0.580157	7.3:+87528473	None:intergenic
TAGTTCGATTACATTGACTC+TGG	0.581611	7.3:+87528822	None:intergenic
TTCCCCAGGTTCGGCAACGA+AGG	0.585501	7.3:-87528656	MS.gene79586:CDS
TGAAATCCTTTCTCGAGATG+AGG	0.601183	7.3:+87528765	None:intergenic
CACTCTTGAAGGATATAACA+GGG	0.603547	7.3:+87528345	None:intergenic
CGCGACGATGATGAGTGTGA+GGG	0.608511	7.3:-87528725	MS.gene79586:CDS
CTACTAATTATAGCATCACC+AGG	0.609536	7.3:-87528968	MS.gene79586:CDS
CATTCACAAAGAAATATCCC+CGG	0.613688	7.3:+87528543	None:intergenic
AGCTTCAACAAATGCTTCGT+AGG	0.613992	7.3:+87528688	None:intergenic
TCGCGACGATGATGAGTGTG+AGG	0.615130	7.3:-87528726	MS.gene79586:CDS
AGAAATATCCCCGGTCATAG+GGG	0.616770	7.3:+87528552	None:intergenic
GAAGGATATAACAGGGTCTG+TGG	0.619235	7.3:+87528352	None:intergenic
CCTCTTAGCCCCTATGACCG+GGG	0.619811	7.3:-87528560	MS.gene79586:CDS
CTGGGAAGCAATACTACGAG+AGG	0.622203	7.3:-87528463	MS.gene79586:CDS
CAAAGCTCTCACAAAACAAG+AGG	0.630156	7.3:-87528590	MS.gene79586:CDS
ATATGTCATAGAAGGCTGGA+AGG	0.630999	7.3:-87528183	MS.gene79586:intron
TGGGAAGCAATACTACGAGA+GGG	0.631128	7.3:-87528462	MS.gene79586:CDS
TAATTATAGCATCACCAGGA+AGG	0.639520	7.3:-87528964	MS.gene79586:intron
TTTACTTGGAAAGGGAAAGG+TGG	0.645661	7.3:+87528296	None:intergenic
AACCGACCACTAGTGCGGCG+AGG	0.658667	7.3:-87528849	MS.gene79586:intron
GCGACGATGATGAGTGTGAG+GGG	0.672599	7.3:-87528724	MS.gene79586:CDS
GGGAAGCAATACTACGAGAG+GGG	0.685899	7.3:-87528461	MS.gene79586:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATAAAATATATGGAGAATG+TGG	-	chr7.3:87528793-87528812	MS.gene79586:CDS	20.0%
!!	AGTAGTACTATTACTATTAT+TGG	+	chr7.3:87528229-87528248	None:intergenic	20.0%
!!	ATCAAAGGGAATAAAATATA+TGG	-	chr7.3:87528784-87528803	MS.gene79586:CDS	20.0%
!	AAAAAACTTTCACAAAGGAT+GGG	-	chr7.3:87528175-87528194	MS.gene79586:CDS	25.0%
!	CAAACAAAAAACTTTCACAA+AGG	-	chr7.3:87528170-87528189	MS.gene79586:CDS	25.0%
!	CTATTACTATTATTGGAAAC+TGG	+	chr7.3:87528222-87528241	None:intergenic	25.0%
!	GACTAAAATCAAAATCAGTA+GGG	+	chr7.3:87528978-87528997	None:intergenic	25.0%
!	TGACTAAAATCAAAATCAGT+AGG	+	chr7.3:87528979-87528998	None:intergenic	25.0%
	AAAAACTTTCACAAAGGATG+GGG	-	chr7.3:87528176-87528195	MS.gene79586:intron	30.0%
	CAAAAAACTTTCACAAAGGA+TGG	-	chr7.3:87528174-87528193	MS.gene79586:CDS	30.0%
!!!	ATTTTGATTTTAGTCAGAGG+AGG	-	chr7.3:87528983-87529002	MS.gene79586:CDS	30.0%
!!!	CTGATTTTGATTTTAGTCAG+AGG	-	chr7.3:87528980-87528999	MS.gene79586:CDS	30.0%
	AAACCATATAGCACTCTTGA+AGG	+	chr7.3:87528881-87528900	None:intergenic	35.0%
	ATGACCACATATGTCATAGA+AGG	-	chr7.3:87529021-87529040	MS.gene79586:CDS	35.0%
	CACTCTTGAAGGATATAACA+GGG	+	chr7.3:87528870-87528889	None:intergenic	35.0%
	CATTCACAAAGAAATATCCC+CGG	+	chr7.3:87528672-87528691	None:intergenic	35.0%
	CTAAATTTCCATGTGTTCCT+GGG	-	chr7.3:87528731-87528750	MS.gene79586:CDS	35.0%
	CTACTAATTATAGCATCACC+AGG	-	chr7.3:87528244-87528263	MS.gene79586:intron	35.0%
	TAATTATAGCATCACCAGGA+AGG	-	chr7.3:87528248-87528267	MS.gene79586:intron	35.0%
	TCTAAATTTCCATGTGTTCC+TGG	-	chr7.3:87528730-87528749	MS.gene79586:CDS	35.0%
	TTATTCCCTTTGATCTGAAG+CGG	+	chr7.3:87528778-87528797	None:intergenic	35.0%
!	AAGATGGCTTTACTTGGAAA+GGG	+	chr7.3:87528927-87528946	None:intergenic	35.0%
!	ACACATGGAAATTTAGAGCT+TGG	+	chr7.3:87528727-87528746	None:intergenic	35.0%
!	GGAGAATGTGGAAGTATAAT+AGG	-	chr7.3:87528805-87528824	MS.gene79586:CDS	35.0%
!!	TAGTTCGATTACATTGACTC+TGG	+	chr7.3:87528393-87528412	None:intergenic	35.0%
!!	TATCCTTCAAGAGTGCTATA+TGG	-	chr7.3:87528875-87528894	MS.gene79586:intron	35.0%
!!!	AGAGACATTGCTGCTTTTTT+TGG	-	chr7.3:87528598-87528617	MS.gene79586:CDS	35.0%
!!!	TCAAGAGTGCTATATGGTTT+TGG	-	chr7.3:87528881-87528900	MS.gene79586:intron	35.0%
	AAAGAAATATCCCCGGTCAT+AGG	+	chr7.3:87528665-87528684	None:intergenic	40.0%
	AAGAAATATCCCCGGTCATA+GGG	+	chr7.3:87528664-87528683	None:intergenic	40.0%
	AGCAATGTGGAAAACAAGCT+GGG	-	chr7.3:87528287-87528306	MS.gene79586:intron	40.0%
	AGCTTCAACAAATGCTTCGT+AGG	+	chr7.3:87528527-87528546	None:intergenic	40.0%
	ATATGTCATAGAAGGCTGGA+AGG	-	chr7.3:87529029-87529048	MS.gene79586:CDS	40.0%
	ATGAATTATGCTGCAGTCCA+TGG	-	chr7.3:87528326-87528345	MS.gene79586:CDS	40.0%
	CAAAGCTCTCACAAAACAAG+AGG	-	chr7.3:87528622-87528641	MS.gene79586:CDS	40.0%
	GCACTCTTGAAGGATATAAC+AGG	+	chr7.3:87528871-87528890	None:intergenic	40.0%
	TGAAATCCTTTCTCGAGATG+AGG	+	chr7.3:87528450-87528469	None:intergenic	40.0%
	TGAATTATGCTGCAGTCCAT+GGG	-	chr7.3:87528327-87528346	MS.gene79586:CDS	40.0%
	TTTACTTGGAAAGGGAAAGG+TGG	+	chr7.3:87528919-87528938	None:intergenic	40.0%
!	CAAGATGGCTTTACTTGGAA+AGG	+	chr7.3:87528928-87528947	None:intergenic	40.0%
	AGAAATATCCCCGGTCATAG+GGG	+	chr7.3:87528663-87528682	None:intergenic	45.0%
	AGAGGAGGTTTCCAGGATAT+GGG	-	chr7.3:87528998-87529017	MS.gene79586:CDS	45.0%
	AGCTCTCACAAAACAAGAGG+TGG	-	chr7.3:87528625-87528644	MS.gene79586:CDS	45.0%
	CAATGTGGAAAACAAGCTGG+GGG	-	chr7.3:87528289-87528308	MS.gene79586:intron	45.0%
	CCACATATGTCATAGAAGGC+TGG	-	chr7.3:87529025-87529044	MS.gene79586:CDS	45.0%
	CCAGCCTTCTATGACATATG+TGG	+	chr7.3:87529028-87529047	None:intergenic	45.0%
	GAAGGATATAACAGGGTCTG+TGG	+	chr7.3:87528863-87528882	None:intergenic	45.0%
	GAATTATGCTGCAGTCCATG+GGG	-	chr7.3:87528328-87528347	MS.gene79586:CDS	45.0%
	GAGCAATGTGGAAAACAAGC+TGG	-	chr7.3:87528286-87528305	MS.gene79586:intron	45.0%
	GCAATGTGGAAAACAAGCTG+GGG	-	chr7.3:87528288-87528307	MS.gene79586:intron	45.0%
	GGCTTTACTTGGAAAGGGAA+AGG	+	chr7.3:87528922-87528941	None:intergenic	45.0%
	TATGTGGTCATCCCATATCC+TGG	+	chr7.3:87529012-87529031	None:intergenic	45.0%
	TATTGCTTCCCAGGAACACA+TGG	+	chr7.3:87528742-87528761	None:intergenic	45.0%
	TCACAAAGGATGGGGAGATT+GGG	-	chr7.3:87528184-87528203	MS.gene79586:intron	45.0%
	TCGCAGTAGTCTTCTTCGAT+GGG	+	chr7.3:87528703-87528722	None:intergenic	45.0%
	TGGGAAGCAATACTACGAGA+GGG	-	chr7.3:87528750-87528769	MS.gene79586:CDS	45.0%
	TTCACAAAGGATGGGGAGAT+TGG	-	chr7.3:87528183-87528202	MS.gene79586:intron	45.0%
	TTCGCAGTAGTCTTCTTCGA+TGG	+	chr7.3:87528704-87528723	None:intergenic	45.0%
	TTTAGTCAGAGGAGGTTTCC+AGG	-	chr7.3:87528991-87529010	MS.gene79586:CDS	45.0%
	AAGCTGCCAAAACATTCCCC+AGG	-	chr7.3:87528542-87528561	MS.gene79586:CDS	50.0%
	ACTTGGAAAGGGAAAGGTGG+AGG	+	chr7.3:87528916-87528935	None:intergenic	50.0%
	ATCAGTAGGGATCCATCGTC+CGG	+	chr7.3:87528965-87528984	None:intergenic	50.0%
	CAGAGGAGGTTTCCAGGATA+TGG	-	chr7.3:87528997-87529016	MS.gene79586:CDS	50.0%
	CTCTCGTAGTATTGCTTCCC+AGG	+	chr7.3:87528751-87528770	None:intergenic	50.0%
	CTGGGAAGCAATACTACGAG+AGG	-	chr7.3:87528749-87528768	MS.gene79586:CDS	50.0%
	GATGATGAGTGTGAGGGGAA+AGG	-	chr7.3:87528493-87528512	MS.gene79586:CDS	50.0%
	GCCAAAACATTCCCCAGGTT+CGG	-	chr7.3:87528547-87528566	MS.gene79586:CDS	50.0%
	GGGAAGCAATACTACGAGAG+GGG	-	chr7.3:87528751-87528770	MS.gene79586:CDS	50.0%
	GGTCTGTGGCAATGAGATCT+GGG	+	chr7.3:87528849-87528868	None:intergenic	50.0%
	GTTATAGCGTCGTGGCAAGA+TGG	+	chr7.3:87528943-87528962	None:intergenic	50.0%
	GTTGATCCACAAAAGCCCCA+TGG	+	chr7.3:87528346-87528365	None:intergenic	50.0%
	TCTTGCCACGACGCTATAAC+CGG	-	chr7.3:87528943-87528962	MS.gene79586:intron	50.0%
	TGGGCAGACAAAGAGCAATG+TGG	-	chr7.3:87528274-87528293	MS.gene79586:intron	50.0%
!	CGTGGCAAGATGGCTTTACT+TGG	+	chr7.3:87528933-87528952	None:intergenic	50.0%
!	GAGATGAGGTACTCCTCTTC+TGG	+	chr7.3:87528436-87528455	None:intergenic	50.0%
!	GGAGTACCTCATCTCGAGAA+AGG	-	chr7.3:87528441-87528460	MS.gene79586:CDS	50.0%
!	TAGCATCACCAGGAAGGTGT+TGG	-	chr7.3:87528254-87528273	MS.gene79586:intron	50.0%
!!	AGCATCACCAGGAAGGTGTT+GGG	-	chr7.3:87528255-87528274	MS.gene79586:intron	50.0%
!!	AGGTACTCCTCTTCTGGAGT+TGG	+	chr7.3:87528430-87528449	None:intergenic	50.0%
!!	TACTCCTCTTCTGGAGTTGG+AGG	+	chr7.3:87528427-87528446	None:intergenic	50.0%
	ACCTCTTAGCCCCTATGACC+GGG	-	chr7.3:87528651-87528670	MS.gene79586:CDS	55.0%
	ACGACGCTATAACCGGACGA+TGG	-	chr7.3:87528950-87528969	MS.gene79586:intron	55.0%
	AGGGGTCCGCTTCAGATCAA+AGG	-	chr7.3:87528769-87528788	MS.gene79586:CDS	55.0%
	ATCGTCCGGTTATAGCGTCG+TGG	+	chr7.3:87528951-87528970	None:intergenic	55.0%
	CACCTCTTAGCCCCTATGAC+CGG	-	chr7.3:87528650-87528669	MS.gene79586:CDS	55.0%
	CGCGACGATGATGAGTGTGA+GGG	-	chr7.3:87528487-87528506	MS.gene79586:CDS	55.0%
	GCGACGATGATGAGTGTGAG+GGG	-	chr7.3:87528488-87528507	MS.gene79586:CDS	55.0%
	GGATCAACCGACCACTAGTG+CGG	-	chr7.3:87528358-87528377	MS.gene79586:CDS	55.0%
	GGGGTCCGCTTCAGATCAAA+GGG	-	chr7.3:87528770-87528789	MS.gene79586:CDS	55.0%
	GGGTCTGTGGCAATGAGATC+TGG	+	chr7.3:87528850-87528869	None:intergenic	55.0%
	TCCTCCTCCAACTCCAGAAG+AGG	-	chr7.3:87528420-87528439	MS.gene79586:CDS	55.0%
	TCGCGACGATGATGAGTGTG+AGG	-	chr7.3:87528486-87528505	MS.gene79586:CDS	55.0%
	TCTCCTTCGTTGCCGAACCT+GGG	+	chr7.3:87528562-87528581	None:intergenic	55.0%
	TTGTCTGCCCAACACCTTCC+TGG	+	chr7.3:87528265-87528284	None:intergenic	55.0%
!	GCCGAACCTGGGGAATGTTT+TGG	+	chr7.3:87528551-87528570	None:intergenic	55.0%
!	TGCAGTCCATGGGGCTTTTG+TGG	-	chr7.3:87528337-87528356	MS.gene79586:CDS	55.0%
!!	TCCTCTTCTGGAGTTGGAGG+AGG	+	chr7.3:87528424-87528443	None:intergenic	55.0%
!!	TCTTCTGGAGTTGGAGGAGG+AGG	+	chr7.3:87528421-87528440	None:intergenic	55.0%
	CCTCTTAGCCCCTATGACCG+GGG	-	chr7.3:87528652-87528671	MS.gene79586:CDS	60.0%
	CTCCTTCGTTGCCGAACCTG+GGG	+	chr7.3:87528561-87528580	None:intergenic	60.0%
	GTCTCCTTCGTTGCCGAACC+TGG	+	chr7.3:87528563-87528582	None:intergenic	60.0%
	TTCCCCAGGTTCGGCAACGA+AGG	-	chr7.3:87528556-87528575	MS.gene79586:CDS	60.0%
	AACCGACCACTAGTGCGGCG+AGG	-	chr7.3:87528363-87528382	MS.gene79586:CDS	65.0%
	ACCCTCGCCGCACTAGTGGT+CGG	+	chr7.3:87528368-87528387	None:intergenic	65.0%
	ACCGACCACTAGTGCGGCGA+GGG	-	chr7.3:87528364-87528383	MS.gene79586:CDS	65.0%
	CCCCGGTCATAGGGGCTAAG+AGG	+	chr7.3:87528655-87528674	None:intergenic	65.0%
	GCTGGAAGGAATGCGCGACC+GGG	-	chr7.3:87529043-87529062	MS.gene79586:CDS	65.0%
	GGCTGGAAGGAATGCGCGAC+CGG	-	chr7.3:87529042-87529061	MS.gene79586:CDS	65.0%
	GGAAGGAATGCGCGACCGGG+TGG	-	chr7.3:87529046-87529065	MS.gene79586:CDS	70.0%
	GGCAACCCTCGCCGCACTAG+TGG	+	chr7.3:87528372-87528391	None:intergenic	70.0%
	GGAATGCGCGACCGGGTGGC+TGG	-	chr7.3:87529050-87529069	MS.gene79586:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	87528156	87529078	87528156	ID=MS.gene79586
chr7.3	mRNA	87528156	87529078	87528156	ID=MS.gene79586.t1;Parent=MS.gene79586
chr7.3	exon	87528965	87529078	87528965	ID=MS.gene79586.t1.exon1;Parent=MS.gene79586.t1
chr7.3	CDS	87528965	87529078	87528965	ID=cds.MS.gene79586.t1;Parent=MS.gene79586.t1
chr7.3	exon	87528301	87528858	87528301	ID=MS.gene79586.t1.exon2;Parent=MS.gene79586.t1
chr7.3	CDS	87528301	87528858	87528301	ID=cds.MS.gene79586.t1;Parent=MS.gene79586.t1
chr7.3	exon	87528156	87528194	87528156	ID=MS.gene79586.t1.exon3;Parent=MS.gene79586.t1
chr7.3	CDS	87528156	87528194	87528156	ID=cds.MS.gene79586.t1;Parent=MS.gene79586.t1

Gene Sequence

>MS.gene79586

ATGCAATTTCATCGCAAACAAAAAACTTTCACAAAGGATGGGGAGATTGGGAAGTGTAATATTCCAGTTTCCAATAATAGTAATAGTACTACTAATTATAGCATCACCAGGAAGGTGTTGGGCAGACAAAGAGCAATGTGGAAAACAAGCTGGGGGTGCACTGTGTCATAATGAATTATGCTGCAGTCCATGGGGCTTTTGTGGATCAACCGACCACTAGTGCGGCGAGGGTTGCCAGAGTCAATGTAATCGAACTACTACTCCTCCTCCTCCAACTCCAGAAGAGGAGTACCTCATCTCGAGAAAGGATTTCAACGAGATGCTTAAACATCGCGACGATGATGAGTGTGAGGGGAAAGGATTTTACACCTACGAAGCATTTGTTGAAGCTGCCAAAACATTCCCCAGGTTCGGCAACGAAGGAGACACTCAAGAGATTAAAAGAGACATTGCTGCTTTTTTTGGTCAAAGCTCTCACAAAACAAGAGGTGGATCACCTCTTAGCCCCTATGACCGGGGATATTTCTTTGTGAATGAAACGAATCCCATCGAAGAAGACTACTGCGAACCAAGCTCTAAATTTCCATGTGTTCCTGGGAAGCAATACTACGAGAGGGGTCCGCTTCAGATCAAAGGGAATAAAATATATGGAGAATGTGGAAGTATAATAGGTGTTGATTTGCTCAATAACCCAGATCTCATTGCCACAGACCCTGTTATATCCTTCAAGAGTGCTATATGGTTTTGGATGAGAACTCCTCCACCTTTCCCTTTCCAAGTAAAGCCATCTTGCCACGACGCTATAACCGGACGATGGATCCCTACTGATTTTGATTTTAGTCAGAGGAGGTTTCCAGGATATGGGATGACCACATATGTCATAGAAGGCTGGAAGGAATGCGCGACCGGGTGGCTGGATGTAA

Protein sequence

>MS.gene79586.t1

MQFHRKQKTFTKDGEIGKCNIPVSNNSNSTTNYSITRKCGEGCQSQCNRTTTPPPPTPEEEYLISRKDFNEMLKHRDDDECEGKGFYTYEAFVEAAKTFPRFGNEGDTQEIKRDIAAFFGQSSHKTRGGSPLSPYDRGYFFVNETNPIEEDYCEPSSKFPCVPGKQYYERGPLQIKGNKIYGECGSIIGVDLLNNPDLIATDPVISFKSAIWFWMRTPPPFPFQKAGRNARPGGWM