Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79674.t1 | XP_013447514.1 | 95.8 | 311 | 13 | 0 | 1 | 311 | 1 | 311 | 3.00E-169 | 604.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79674.t1 | Q55DL2 | 44.5 | 220 | 94 | 6 | 92 | 311 | 116 | 307 | 3.0e-40 | 167.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79674.t1 | I3S9D2 | 95.8 | 311 | 13 | 0 | 1 | 311 | 1 | 311 | 2.2e-169 | 604.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057060 | MS.gene79674 | 0.810815 | 9.55E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene79674 | 0.827665 | 1.38E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79674.t1 | MTR_7g008030 | 95.820 | 311 | 13 | 0 | 1 | 311 | 1 | 311 | 0.0 | 612 |
| MS.gene79674.t1 | MTR_2g098630 | 34.056 | 323 | 139 | 9 | 50 | 311 | 37 | 346 | 6.68e-51 | 172 |
| MS.gene79674.t1 | MTR_2g098630 | 34.056 | 323 | 139 | 9 | 50 | 311 | 53 | 362 | 8.70e-51 | 172 |
| MS.gene79674.t1 | MTR_2g098630 | 33.636 | 220 | 79 | 7 | 153 | 311 | 43 | 256 | 4.15e-28 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79674.t1 | AT4G14000 | 61.074 | 298 | 107 | 3 | 14 | 311 | 2 | 290 | 2.66e-115 | 335 |
| MS.gene79674.t1 | AT2G43320 | 37.117 | 326 | 136 | 9 | 48 | 311 | 33 | 351 | 6.21e-61 | 198 |
| MS.gene79674.t1 | AT2G43320 | 37.117 | 326 | 136 | 9 | 48 | 311 | 33 | 351 | 6.21e-61 | 198 |
Find 61 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGGGGTTACTTTGTTTA+AGG | 0.171665 | 7.3:+89442873 | MS.gene79674:CDS |
| AGAAACATTGGCATTTATAT+TGG | 0.194429 | 7.3:-89444704 | None:intergenic |
| AATATAAATGCCAATGTTTC+TGG | 0.219315 | 7.3:+89444706 | MS.gene79674:CDS |
| AGCTGAAATGTTTCGAAATT+CGG | 0.259476 | 7.3:-89442592 | None:intergenic |
| TCCAACTCTGATTTAGTTCC+TGG | 0.286361 | 7.3:+89443468 | MS.gene79674:CDS |
| TCCTCCGTAGGTTCTGGTTT+CGG | 0.305874 | 7.3:+89442622 | MS.gene79674:CDS |
| GAAACATTGGCATTTATATT+GGG | 0.315058 | 7.3:-89444703 | None:intergenic |
| GCATTATGTTTAACGAATAA+AGG | 0.316520 | 7.3:-89442835 | None:intergenic |
| AGATGAACCATCTGTGATTT+CGG | 0.352865 | 7.3:-89446119 | None:intergenic |
| AAACTCAGAGTGTGATTCTA+AGG | 0.361676 | 7.3:+89442481 | MS.gene79674:CDS |
| CATCTAATGTGCGTGAAGTA+TGG | 0.368040 | 7.3:+89446137 | MS.gene79674:CDS |
| AGTGAGCTTATTTCATTTAG+TGG | 0.381154 | 7.3:+89443832 | MS.gene79674:CDS |
| TAGTGGGAAACGAGTATTAG+AGG | 0.402144 | 7.3:+89443849 | MS.gene79674:CDS |
| GCAAAACACAATGAAGGTTC+TGG | 0.409363 | 7.3:+89444838 | MS.gene79674:CDS |
| TCAAGCAAAGCATAGATTCC+AGG | 0.458718 | 7.3:-89444535 | None:intergenic |
| GTGAGCTTATTTCATTTAGT+GGG | 0.460422 | 7.3:+89443833 | MS.gene79674:CDS |
| GCTGCAAAGAAGTATTACTT+TGG | 0.479297 | 7.3:+89445102 | MS.gene79674:CDS |
| ATTCAGGTCGGATGCGGTCA+TGG | 0.485010 | 7.3:+89444508 | MS.gene79674:intron |
| GGATGCGGTCATGGACTGCC+TGG | 0.512316 | 7.3:+89444517 | MS.gene79674:CDS |
| AAGTGCTTGCTACGTCCTCA+TGG | 0.525563 | 7.3:+89445066 | MS.gene79674:intron |
| AAGAAGTATTACTTTGGAGT+AGG | 0.526620 | 7.3:+89445108 | MS.gene79674:CDS |
| TTTGTCGAGCTAGACGGCGA+TGG | 0.544702 | 7.3:-89444739 | None:intergenic |
| TTGGAGTAGGCGGAGGAACT+CGG | 0.551545 | 7.3:+89445121 | MS.gene79674:CDS |
| CCCAGGAACTAAATCAGAGT+TGG | 0.552791 | 7.3:-89443469 | None:intergenic |
| CCAACTCTGATTTAGTTCCT+GGG | 0.553319 | 7.3:+89443469 | MS.gene79674:CDS |
| TCTATACAATCTAATCAAGA+AGG | 0.554077 | 7.3:+89444915 | MS.gene79674:CDS |
| TGGAATCTATGCTTTGCTTG+AGG | 0.559472 | 7.3:+89444537 | MS.gene79674:CDS |
| GTTTAGGAGGACTGAAGCTG+TGG | 0.560778 | 7.3:+89443764 | MS.gene79674:intron |
| CAATCACCTTCGTACTTCCC+AGG | 0.563330 | 7.3:-89443486 | None:intergenic |
| TTGTCATTTGTCGAGCTAGA+CGG | 0.566846 | 7.3:-89444745 | None:intergenic |
| AGTTCTTGTTTCTGAATCAG+AGG | 0.567758 | 7.3:+89442702 | MS.gene79674:CDS |
| TATTTGATTCAGGTCGGATG+CGG | 0.568323 | 7.3:+89444502 | MS.gene79674:intron |
| TATTACTTTGGAGTAGGCGG+AGG | 0.575446 | 7.3:+89445114 | MS.gene79674:CDS |
| ACAGATGCAAAACACAATGA+AGG | 0.576866 | 7.3:+89444832 | MS.gene79674:CDS |
| AAGTATTACTTTGGAGTAGG+CGG | 0.584131 | 7.3:+89445111 | MS.gene79674:CDS |
| TTGCGATCCTCCAGAAACAT+TGG | 0.587349 | 7.3:-89444716 | None:intergenic |
| GAAACCAGAACCTACGGAGG+AGG | 0.588502 | 7.3:-89442620 | None:intergenic |
| TCCTCATGGAGTTGTGTACA+TGG | 0.589912 | 7.3:+89445080 | MS.gene79674:CDS |
| CTATCTGTGGTGGAAGAAGA+TGG | 0.592623 | 7.3:+89445150 | MS.gene79674:CDS |
| AGAACTTCAACACAAGGAGG+TGG | 0.600071 | 7.3:-89442685 | None:intergenic |
| TCGGAGATTTCTATCTGTGG+TGG | 0.606490 | 7.3:+89445140 | MS.gene79674:CDS |
| TATTCCGAAACCAGAACCTA+CGG | 0.608029 | 7.3:-89442626 | None:intergenic |
| GGAGGACTGAAGCTGTGGGA+AGG | 0.608529 | 7.3:+89443769 | MS.gene79674:intron |
| ATTCGTTAAACATAATGCTG+AGG | 0.610815 | 7.3:+89442840 | MS.gene79674:CDS |
| ACTTCAACACAAGGAGGTGG+AGG | 0.612980 | 7.3:-89442682 | None:intergenic |
| TTTGCATCTGTACCAACATG+AGG | 0.622268 | 7.3:-89444820 | None:intergenic |
| AACTCGGAGATTTCTATCTG+TGG | 0.630180 | 7.3:+89445137 | MS.gene79674:CDS |
| TTAGTTCCTGGGAAGTACGA+AGG | 0.631246 | 7.3:+89443480 | MS.gene79674:CDS |
| GTCTAGCTCGACAAATGACA+AGG | 0.635144 | 7.3:+89444747 | MS.gene79674:CDS |
| TTGCATCTGTACCAACATGA+GGG | 0.641128 | 7.3:-89444819 | None:intergenic |
| GATAAACTGCTCCCTCATGT+TGG | 0.641741 | 7.3:+89444808 | MS.gene79674:CDS |
| ATAAATGCCAATGTTTCTGG+AGG | 0.642509 | 7.3:+89444709 | MS.gene79674:CDS |
| ATGGTTGCCGAAATCACAGA+TGG | 0.649641 | 7.3:+89446112 | MS.gene79674:CDS |
| TTTAGGAGGACTGAAGCTGT+GGG | 0.658500 | 7.3:+89443765 | MS.gene79674:intron |
| TGTGAGACATCGTAGGACCT+CGG | 0.666981 | 7.3:-89444677 | None:intergenic |
| TGGGAATTGTGAGACATCGT+AGG | 0.667161 | 7.3:-89444684 | None:intergenic |
| AGGCATCTTGACTAGTAACA+TGG | 0.667629 | 7.3:+89446093 | MS.gene79674:intron |
| GAAACAAGAACTTCAACACA+AGG | 0.676741 | 7.3:-89442691 | None:intergenic |
| GCCATGTACACAACTCCATG+AGG | 0.705782 | 7.3:-89445081 | None:intergenic |
| ACAAGAACTTCAACACAAGG+AGG | 0.724215 | 7.3:-89442688 | None:intergenic |
| TCCGAAACCAGAACCTACGG+AGG | 0.726034 | 7.3:-89442623 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATATTCATAATGTT+TGG | - | chr7.3:89445673-89445692 | None:intergenic | 10.0% |
| !! | GATAATATGAATAATAAATT+TGG | - | chr7.3:89443371-89443390 | None:intergenic | 10.0% |
| !!! | AAACATTATGAATATTTTTT+TGG | + | chr7.3:89445672-89445691 | MS.gene79674:intron | 10.0% |
| !!! | ATAAAAATTAAGTTTTTAAC+CGG | - | chr7.3:89443136-89443155 | None:intergenic | 10.0% |
| !! | AATTTGATATTTCGTATATT+TGG | + | chr7.3:89443341-89443360 | MS.gene79674:intron | 15.0% |
| !! | ATTTGATATTTCGTATATTT+GGG | + | chr7.3:89443342-89443361 | MS.gene79674:intron | 15.0% |
| !!! | AAACTTAATTTTTATGATGA+TGG | + | chr7.3:89443141-89443160 | MS.gene79674:intron | 15.0% |
| !!! | ACTTAAATTTTTATGCAAAT+TGG | - | chr7.3:89443171-89443190 | None:intergenic | 15.0% |
| !!! | ATTGACAAAAAACAATTTTA+GGG | + | chr7.3:89443315-89443334 | MS.gene79674:intron | 15.0% |
| !!! | ATTTTTCTCTTATCAATTAA+CGG | + | chr7.3:89442533-89442552 | MS.gene79674:intron | 15.0% |
| !!! | GATATTATTAGATATTTCTA+TGG | + | chr7.3:89445743-89445762 | MS.gene79674:intron | 15.0% |
| !!! | GTTTTTTTTTTTTGTTTTGT+TGG | + | chr7.3:89442795-89442814 | MS.gene79674:intron | 15.0% |
| !!! | TGCATTTTTTAAATCAAAAT+GGG | + | chr7.3:89445810-89445829 | MS.gene79674:intron | 15.0% |
| !!! | TTGCATTTTTTAAATCAAAA+TGG | + | chr7.3:89445809-89445828 | MS.gene79674:intron | 15.0% |
| !! | ATCTTTGCTGATAAAAATAT+TGG | + | chr7.3:89445014-89445033 | MS.gene79674:intron | 20.0% |
| !! | TAGTTTCAAATATTTGATTC+AGG | + | chr7.3:89444492-89444511 | MS.gene79674:intron | 20.0% |
| !! | TTGATATACAATTGAATAAG+AGG | + | chr7.3:89443985-89444004 | MS.gene79674:intron | 20.0% |
| !! | TTTGATATTTCGTATATTTG+GGG | + | chr7.3:89443343-89443362 | MS.gene79674:intron | 20.0% |
| !!! | ATAGCTTATACTAGTTTATA+TGG | + | chr7.3:89444409-89444428 | MS.gene79674:intron | 20.0% |
| !!! | ATAGTATTGATATATGCAAA+AGG | + | chr7.3:89445177-89445196 | MS.gene79674:intron | 20.0% |
| !!! | ATTTTTGAGCTTATGAAAAA+TGG | - | chr7.3:89444345-89444364 | None:intergenic | 20.0% |
| !!! | CATTTTTTAAATCAAAATGG+GGG | + | chr7.3:89445812-89445831 | MS.gene79674:intron | 20.0% |
| !!! | GATTGACAAAAAACAATTTT+AGG | + | chr7.3:89443314-89443333 | MS.gene79674:intron | 20.0% |
| !!! | GCATTTTTTAAATCAAAATG+GGG | + | chr7.3:89445811-89445830 | MS.gene79674:intron | 20.0% |
| !!! | TTATACAGTTTTAACTATCA+AGG | + | chr7.3:89445700-89445719 | MS.gene79674:intron | 20.0% |
| ! | AAATATTCATAATGTTTGGC+CGG | - | chr7.3:89445669-89445688 | None:intergenic | 25.0% |
| ! | AATATAAATGCCAATGTTTC+TGG | + | chr7.3:89444706-89444725 | MS.gene79674:CDS | 25.0% |
| ! | ACCGTATTATTTATCAATCT+GGG | + | chr7.3:89445781-89445800 | MS.gene79674:intron | 25.0% |
| ! | AGAAACATTGGCATTTATAT+TGG | - | chr7.3:89444707-89444726 | None:intergenic | 25.0% |
| ! | ATAAGTTATTCAAGAGAACT+GGG | - | chr7.3:89444385-89444404 | None:intergenic | 25.0% |
| ! | ATATCTAATAATATCCTGTG+AGG | - | chr7.3:89445738-89445757 | None:intergenic | 25.0% |
| ! | ATGTAATGATGTGTTTACTA+TGG | + | chr7.3:89444612-89444631 | MS.gene79674:intron | 25.0% |
| ! | ATTAAGTAGTTTCGTTGATA+CGG | + | chr7.3:89445252-89445271 | MS.gene79674:intron | 25.0% |
| ! | GAAACATTGGCATTTATATT+GGG | - | chr7.3:89444706-89444725 | None:intergenic | 25.0% |
| ! | GCATTATGTTTAACGAATAA+AGG | - | chr7.3:89442838-89442857 | None:intergenic | 25.0% |
| ! | TACAATTTCAGAACTCAAAA+TGG | - | chr7.3:89442962-89442981 | None:intergenic | 25.0% |
| ! | TCTATACAATCTAATCAAGA+AGG | + | chr7.3:89444915-89444934 | MS.gene79674:CDS | 25.0% |
| ! | TTCAAATATTTGATTCAGGT+CGG | + | chr7.3:89444496-89444515 | MS.gene79674:intron | 25.0% |
| ! | TTCAGAATACATGTTTATGT+TGG | - | chr7.3:89443652-89443671 | None:intergenic | 25.0% |
| ! | TTTGTTGGATTGTTGAAATT+AGG | + | chr7.3:89442810-89442829 | MS.gene79674:intron | 25.0% |
| !! | ATTGATTTCCTACTATACTA+TGG | + | chr7.3:89445574-89445593 | MS.gene79674:intron | 25.0% |
| !! | TGGTTATGATTTTATTCTCA+TGG | + | chr7.3:89444858-89444877 | MS.gene79674:CDS | 25.0% |
| !! | TTATGATTTTATTCTCATGG+CGG | + | chr7.3:89444861-89444880 | MS.gene79674:CDS | 25.0% |
| !!! | AGTTTTATCACATTCTTGTA+GGG | + | chr7.3:89443414-89443433 | MS.gene79674:intron | 25.0% |
| !!! | GTGACTTCAATTTTTTCTTA+TGG | + | chr7.3:89445861-89445880 | MS.gene79674:intron | 25.0% |
| !!! | TAGTTTTATCACATTCTTGT+AGG | + | chr7.3:89443413-89443432 | MS.gene79674:intron | 25.0% |
| AAAAATAAGCCAATCCAAAC+GGG | + | chr7.3:89444359-89444378 | MS.gene79674:intron | 30.0% | |
| AATTTCAGAACTCAAAATGG+TGG | - | chr7.3:89442959-89442978 | None:intergenic | 30.0% | |
| ACTGATCCATGTAATTATAC+CGG | + | chr7.3:89445647-89445666 | MS.gene79674:intron | 30.0% | |
| ACTTATTTGAGCTTATCTAC+TGG | + | chr7.3:89444039-89444058 | MS.gene79674:intron | 30.0% | |
| AGCTGAAATGTTTCGAAATT+CGG | - | chr7.3:89442595-89442614 | None:intergenic | 30.0% | |
| AGTGAGCTTATTTCATTTAG+TGG | + | chr7.3:89443832-89443851 | MS.gene79674:CDS | 30.0% | |
| ATCAGAGGTAAATTCTTGTT+TGG | + | chr7.3:89442717-89442736 | MS.gene79674:intron | 30.0% | |
| ATTAACACACCTTTAGTCTA+TGG | + | chr7.3:89443685-89443704 | MS.gene79674:intron | 30.0% | |
| ATTACATGGATCAGTGATTT+AGG | - | chr7.3:89445642-89445661 | None:intergenic | 30.0% | |
| ATTCGTTAAACATAATGCTG+AGG | + | chr7.3:89442840-89442859 | MS.gene79674:CDS | 30.0% | |
| CAAAAATAAGCCAATCCAAA+CGG | + | chr7.3:89444358-89444377 | MS.gene79674:intron | 30.0% | |
| CAAATGAGTCCTTCATATAT+CGG | - | chr7.3:89445616-89445635 | None:intergenic | 30.0% | |
| CATAAGTTATTCAAGAGAAC+TGG | - | chr7.3:89444386-89444405 | None:intergenic | 30.0% | |
| CATTGCAAAATTGCAATTAC+TGG | - | chr7.3:89444959-89444978 | None:intergenic | 30.0% | |
| GACCGTATTATTTATCAATC+TGG | + | chr7.3:89445780-89445799 | MS.gene79674:intron | 30.0% | |
| GATCAACTAAAAACAGCTTA+TGG | - | chr7.3:89444122-89444141 | None:intergenic | 30.0% | |
| GCCCAGATTGATAAATAATA+CGG | - | chr7.3:89445785-89445804 | None:intergenic | 30.0% | |
| GTGAGCTTATTTCATTTAGT+GGG | + | chr7.3:89443833-89443852 | MS.gene79674:CDS | 30.0% | |
| GTGTTTACTATGGTTGATTA+GGG | + | chr7.3:89444622-89444641 | MS.gene79674:intron | 30.0% | |
| TACTAAATCAGTTGCAACTT+TGG | + | chr7.3:89443732-89443751 | MS.gene79674:intron | 30.0% | |
| TCTAAACACAAGTTTCATAC+CGG | + | chr7.3:89443114-89443133 | MS.gene79674:intron | 30.0% | |
| TGCAAACAAGTTATGACATA+TGG | + | chr7.3:89444096-89444115 | MS.gene79674:intron | 30.0% | |
| TGTCATGTTAAATGACACTT+TGG | - | chr7.3:89443253-89443272 | None:intergenic | 30.0% | |
| TGTGTTTACTATGGTTGATT+AGG | + | chr7.3:89444621-89444640 | MS.gene79674:intron | 30.0% | |
| TGTTTACTATGGTTGATTAG+GGG | + | chr7.3:89444623-89444642 | MS.gene79674:intron | 30.0% | |
| TTAAGTAGTTTCGTTGATAC+GGG | + | chr7.3:89445253-89445272 | MS.gene79674:intron | 30.0% | |
| ! | ACTTTTGATATCTGAACGAA+GGG | - | chr7.3:89443815-89443834 | None:intergenic | 30.0% |
| ! | ATACTAAAGTACTAACTGGT+AGG | - | chr7.3:89446036-89446055 | None:intergenic | 30.0% |
| ! | CTCTGTCATTTAACTCATTT+GGG | - | chr7.3:89443286-89443305 | None:intergenic | 30.0% |
| ! | GAGGTGAAACTATGTTTTAT+TGG | + | chr7.3:89444556-89444575 | MS.gene79674:intron | 30.0% |
| ! | GCATATACTAAAGTACTAAC+TGG | - | chr7.3:89446040-89446059 | None:intergenic | 30.0% |
| ! | GTGAATACTCAACAAGTTTT+TGG | + | chr7.3:89443441-89443460 | MS.gene79674:CDS | 30.0% |
| ! | TACTAAAGTACTAACTGGTA+GGG | - | chr7.3:89446035-89446054 | None:intergenic | 30.0% |
| ! | TCAAAAAAAGCCTTATCCAA+AGG | - | chr7.3:89444158-89444177 | None:intergenic | 30.0% |
| ! | TCTCTGTCATTTAACTCATT+TGG | - | chr7.3:89443287-89443306 | None:intergenic | 30.0% |
| ! | TCTGTCATTTAACTCATTTG+GGG | - | chr7.3:89443285-89443304 | None:intergenic | 30.0% |
| !! | AAGAAGTATTACTTTGGAGT+AGG | + | chr7.3:89445108-89445127 | MS.gene79674:CDS | 30.0% |
| !! | CTGAGGAAGTAAATTTTGAT+GGG | + | chr7.3:89442857-89442876 | MS.gene79674:CDS | 30.0% |
| !! | TACAGAGTATTGTCAAATAG+CGG | + | chr7.3:89445487-89445506 | MS.gene79674:intron | 30.0% |
| !! | TGAGGAAGTAAATTTTGATG+GGG | + | chr7.3:89442858-89442877 | MS.gene79674:CDS | 30.0% |
| !!! | ATGTTTTATTGGCTTTGCTT+TGG | + | chr7.3:89444567-89444586 | MS.gene79674:intron | 30.0% |
| !!! | TGTTTTTAGTTGATCTACGT+TGG | + | chr7.3:89444127-89444146 | MS.gene79674:intron | 30.0% |
| AAACGCACAACAATATTGGT+CGG | - | chr7.3:89445457-89445476 | None:intergenic | 35.0% | |
| AAACTCAGAGTGTGATTCTA+AGG | + | chr7.3:89442481-89442500 | MS.gene79674:CDS | 35.0% | |
| AAGAGGATATACTCAAAGCT+AGG | + | chr7.3:89444002-89444021 | MS.gene79674:intron | 35.0% | |
| AATCACTTGTGAGATTGCTT+GGG | + | chr7.3:89444065-89444084 | MS.gene79674:intron | 35.0% | |
| ACAGATGCAAAACACAATGA+AGG | + | chr7.3:89444832-89444851 | MS.gene79674:CDS | 35.0% | |
| AGAGGATATACTCAAAGCTA+GGG | + | chr7.3:89444003-89444022 | MS.gene79674:intron | 35.0% | |
| AGATGAACCATCTGTGATTT+CGG | - | chr7.3:89446122-89446141 | None:intergenic | 35.0% | |
| CGATATATGAAGGACTCATT+TGG | + | chr7.3:89445614-89445633 | MS.gene79674:intron | 35.0% | |
| GAAACAAGAACTTCAACACA+AGG | - | chr7.3:89442694-89442713 | None:intergenic | 35.0% | |
| GCTTCATAGATAGAAATGCA+AGG | - | chr7.3:89443521-89443540 | None:intergenic | 35.0% | |
| GTTTACTATGGTTGATTAGG+GGG | + | chr7.3:89444624-89444643 | MS.gene79674:intron | 35.0% | |
| TAACAGTGCTTTATATGTGC+AGG | + | chr7.3:89446073-89446092 | MS.gene79674:intron | 35.0% | |
| TAAGTAGATGTGATGTCACA+TGG | + | chr7.3:89443063-89443082 | MS.gene79674:intron | 35.0% | |
| TAATCACTTGTGAGATTGCT+TGG | + | chr7.3:89444064-89444083 | MS.gene79674:intron | 35.0% | |
| TCGGTATGAAACTTGTGTTT+AGG | + | chr7.3:89443196-89443215 | MS.gene79674:intron | 35.0% | |
| TGTGAAACGCACAACAATAT+TGG | - | chr7.3:89445461-89445480 | None:intergenic | 35.0% | |
| TTATCACATTCTTGTAGGGA+CGG | + | chr7.3:89443418-89443437 | MS.gene79674:intron | 35.0% | |
| TTTCTTATGGAAGTCGTACA+TGG | + | chr7.3:89445874-89445893 | MS.gene79674:intron | 35.0% | |
| ! | ACTAAAGGTGTGTTAATGTC+TGG | - | chr7.3:89443682-89443701 | None:intergenic | 35.0% |
| ! | ACTTGTGTTTAGGATATGTC+TGG | + | chr7.3:89443206-89443225 | MS.gene79674:intron | 35.0% |
| ! | ACTTTAAGAAAGCCGTACTT+GGG | + | chr7.3:89445975-89445994 | MS.gene79674:intron | 35.0% |
| ! | ACTTTGGTTTCCTTTGGTTT+AGG | + | chr7.3:89443748-89443767 | MS.gene79674:intron | 35.0% |
| ! | CACTTTTGATATCTGAACGA+AGG | - | chr7.3:89443816-89443835 | None:intergenic | 35.0% |
| ! | CTGTCATTTAACTCATTTGG+GGG | - | chr7.3:89443284-89443303 | None:intergenic | 35.0% |
| ! | CTTGTGTTTAGAATTTCGTG+TGG | - | chr7.3:89443106-89443125 | None:intergenic | 35.0% |
| ! | GCTGAGGAAGTAAATTTTGA+TGG | + | chr7.3:89442856-89442875 | MS.gene79674:CDS | 35.0% |
| ! | TGATGGGGTTACTTTGTTTA+AGG | + | chr7.3:89442873-89442892 | MS.gene79674:CDS | 35.0% |
| !! | AAGTATTACTTTGGAGTAGG+CGG | + | chr7.3:89445111-89445130 | MS.gene79674:CDS | 35.0% |
| !! | AGTTCTTGTTTCTGAATCAG+AGG | + | chr7.3:89442702-89442721 | MS.gene79674:CDS | 35.0% |
| !! | ATAAATGCCAATGTTTCTGG+AGG | + | chr7.3:89444709-89444728 | MS.gene79674:CDS | 35.0% |
| !! | GCTGCAAAGAAGTATTACTT+TGG | + | chr7.3:89445102-89445121 | MS.gene79674:CDS | 35.0% |
| !! | TTTTAGTTGATCTACGTTGG+TGG | + | chr7.3:89444130-89444149 | MS.gene79674:intron | 35.0% |
| AACTCGGAGATTTCTATCTG+TGG | + | chr7.3:89445137-89445156 | MS.gene79674:CDS | 40.0% | |
| AATGTCACCATTCCCAAGTA+CGG | - | chr7.3:89445990-89446009 | None:intergenic | 40.0% | |
| ACAAGAACTTCAACACAAGG+AGG | - | chr7.3:89442691-89442710 | None:intergenic | 40.0% | |
| ACCGCTATTGTTACACGTTA+CGG | + | chr7.3:89445370-89445389 | MS.gene79674:intron | 40.0% | |
| AGGCATCTTGACTAGTAACA+TGG | + | chr7.3:89446093-89446112 | MS.gene79674:intron | 40.0% | |
| CATATATCGGTGTATGTGCA+TGG | - | chr7.3:89445603-89445622 | None:intergenic | 40.0% | |
| CATCTAATGTGCGTGAAGTA+TGG | + | chr7.3:89446137-89446156 | MS.gene79674:CDS | 40.0% | |
| CATGGCAACCATAGTATAGT+AGG | - | chr7.3:89445585-89445604 | None:intergenic | 40.0% | |
| GCAAAACACAATGAAGGTTC+TGG | + | chr7.3:89444838-89444857 | MS.gene79674:CDS | 40.0% | |
| GCACATACACCGATATATGA+AGG | + | chr7.3:89445604-89445623 | MS.gene79674:intron | 40.0% | |
| GCATCAGTACCATAGACTAA+AGG | - | chr7.3:89443697-89443716 | None:intergenic | 40.0% | |
| GGCTTTCTTAAAGTCGCAAA+TGG | - | chr7.3:89445969-89445988 | None:intergenic | 40.0% | |
| GTTTGGCCGGTATAATTACA+TGG | - | chr7.3:89445656-89445675 | None:intergenic | 40.0% | |
| TAGTGGGAAACGAGTATTAG+AGG | + | chr7.3:89443849-89443868 | MS.gene79674:CDS | 40.0% | |
| TATCACATTCTTGTAGGGAC+GGG | + | chr7.3:89443419-89443438 | MS.gene79674:intron | 40.0% | |
| TATTCCGAAACCAGAACCTA+CGG | - | chr7.3:89442629-89442648 | None:intergenic | 40.0% | |
| TATTTGATTCAGGTCGGATG+CGG | + | chr7.3:89444502-89444521 | MS.gene79674:intron | 40.0% | |
| TCAAGCAAAGCATAGATTCC+AGG | - | chr7.3:89444538-89444557 | None:intergenic | 40.0% | |
| TCCGTAACGTGTAACAATAG+CGG | - | chr7.3:89445374-89445393 | None:intergenic | 40.0% | |
| TGGAATCTATGCTTTGCTTG+AGG | + | chr7.3:89444537-89444556 | MS.gene79674:CDS | 40.0% | |
| TTGCATCTGTACCAACATGA+GGG | - | chr7.3:89444822-89444841 | None:intergenic | 40.0% | |
| TTGCATTTAACGCGACACAT+CGG | - | chr7.3:89443032-89443051 | None:intergenic | 40.0% | |
| TTTGCATCTGTACCAACATG+AGG | - | chr7.3:89444823-89444842 | None:intergenic | 40.0% | |
| ! | ACTCAAAGCTAGGGTTTGTT+TGG | + | chr7.3:89444012-89444031 | MS.gene79674:intron | 40.0% |
| ! | CCAACTCTGATTTAGTTCCT+GGG | + | chr7.3:89443469-89443488 | MS.gene79674:CDS | 40.0% |
| ! | GACTTTAAGAAAGCCGTACT+TGG | + | chr7.3:89445974-89445993 | MS.gene79674:intron | 40.0% |
| ! | GTTGCAACTTTGGTTTCCTT+TGG | + | chr7.3:89443742-89443761 | MS.gene79674:intron | 40.0% |
| ! | GTTTAGAATTTCGTGTGGCA+TGG | - | chr7.3:89443101-89443120 | None:intergenic | 40.0% |
| ! | TCCAACTCTGATTTAGTTCC+TGG | + | chr7.3:89443468-89443487 | MS.gene79674:CDS | 40.0% |
| ! | TGTTTAGGATATGTCTGGCA+TGG | + | chr7.3:89443211-89443230 | MS.gene79674:intron | 40.0% |
| ! | TTGGTTTCCTTTGGTTTAGG+AGG | + | chr7.3:89443751-89443770 | MS.gene79674:intron | 40.0% |
| ! | TTGTCATTTGTCGAGCTAGA+CGG | - | chr7.3:89444748-89444767 | None:intergenic | 40.0% |
| !! | TTTTCAAGACTTCAATGCCG+AGG | + | chr7.3:89444660-89444679 | MS.gene79674:CDS | 40.0% |
| AAGAAAGCCGTACTTGGGAA+TGG | + | chr7.3:89445980-89445999 | MS.gene79674:intron | 45.0% | |
| AATCAATGTTGTCAACCGCG+CGG | - | chr7.3:89445557-89445576 | None:intergenic | 45.0% | |
| AGAACTTCAACACAAGGAGG+TGG | - | chr7.3:89442688-89442707 | None:intergenic | 45.0% | |
| ATGGTTGCCGAAATCACAGA+TGG | + | chr7.3:89446112-89446131 | MS.gene79674:CDS | 45.0% | |
| CCCAGGAACTAAATCAGAGT+TGG | - | chr7.3:89443472-89443491 | None:intergenic | 45.0% | |
| CTTCAGTCCTCCTAAACCAA+AGG | - | chr7.3:89443761-89443780 | None:intergenic | 45.0% | |
| GATAAACTGCTCCCTCATGT+TGG | + | chr7.3:89444808-89444827 | MS.gene79674:CDS | 45.0% | |
| GGATATGATGCAATCCTCAC+AGG | + | chr7.3:89445721-89445740 | MS.gene79674:intron | 45.0% | |
| GGGAAACGAGTATTAGAGGT+GGG | + | chr7.3:89443853-89443872 | MS.gene79674:intron | 45.0% | |
| GTGTCGCGTTAAATGCAACA+TGG | + | chr7.3:89443034-89443053 | MS.gene79674:intron | 45.0% | |
| TACATGGCTGATGGCATTGT+CGG | + | chr7.3:89445890-89445909 | MS.gene79674:intron | 45.0% | |
| TACTATGGTTGATTAGGGGG+CGG | + | chr7.3:89444627-89444646 | MS.gene79674:intron | 45.0% | |
| TCCTCATGGAGTTGTGTACA+TGG | + | chr7.3:89445080-89445099 | MS.gene79674:CDS | 45.0% | |
| TCGGAGATTTCTATCTGTGG+TGG | + | chr7.3:89445140-89445159 | MS.gene79674:CDS | 45.0% | |
| TGGGAAACGAGTATTAGAGG+TGG | + | chr7.3:89443852-89443871 | MS.gene79674:intron | 45.0% | |
| TGGGAATTGTGAGACATCGT+AGG | - | chr7.3:89444687-89444706 | None:intergenic | 45.0% | |
| TTGCGATCCTCCAGAAACAT+TGG | - | chr7.3:89444719-89444738 | None:intergenic | 45.0% | |
| TTTAGGAGGACTGAAGCTGT+GGG | + | chr7.3:89443765-89443784 | MS.gene79674:intron | 45.0% | |
| ! | CCATAACACTATTTTCCGCG+CGG | + | chr7.3:89445539-89445558 | MS.gene79674:intron | 45.0% |
| ! | CTATCTGTGGTGGAAGAAGA+TGG | + | chr7.3:89445150-89445169 | MS.gene79674:CDS | 45.0% |
| ! | GTCTAGCTCGACAAATGACA+AGG | + | chr7.3:89444747-89444766 | MS.gene79674:CDS | 45.0% |
| ! | TTAGTTCCTGGGAAGTACGA+AGG | + | chr7.3:89443480-89443499 | MS.gene79674:CDS | 45.0% |
| !! | TATTACTTTGGAGTAGGCGG+AGG | + | chr7.3:89445114-89445133 | MS.gene79674:CDS | 45.0% |
| !!! | GCAGAAGTTCGCTTTTTTGC+TGG | + | chr7.3:89444769-89444788 | MS.gene79674:CDS | 45.0% |
| !!! | TTCGCTTTTTTGCTGGTGAC+TGG | + | chr7.3:89444776-89444795 | MS.gene79674:CDS | 45.0% |
| !!! | ATAAAAATTTAAGTTTTAAT+CGG | + | chr7.3:89443177-89443196 | MS.gene79674:intron | 5.0% |
| ACTTCAACACAAGGAGGTGG+AGG | - | chr7.3:89442685-89442704 | None:intergenic | 50.0% | |
| AGGTGGGCATCACTTTCTTC+AGG | + | chr7.3:89443869-89443888 | MS.gene79674:intron | 50.0% | |
| CAATCACCTTCGTACTTCCC+AGG | - | chr7.3:89443489-89443508 | None:intergenic | 50.0% | |
| CCGCGCGGAAAATAGTGTTA+TGG | - | chr7.3:89445542-89445561 | None:intergenic | 50.0% | |
| GCCATGTACACAACTCCATG+AGG | - | chr7.3:89445084-89445103 | None:intergenic | 50.0% | |
| GTTTAGGAGGACTGAAGCTG+TGG | + | chr7.3:89443764-89443783 | MS.gene79674:intron | 50.0% | |
| TGGAAGTCGTACATGGCTGA+TGG | + | chr7.3:89445881-89445900 | MS.gene79674:intron | 50.0% | |
| TGTCTGGCATGGCATCATCA+TGG | + | chr7.3:89443222-89443241 | MS.gene79674:intron | 50.0% | |
| TGTGAGACATCGTAGGACCT+CGG | - | chr7.3:89444680-89444699 | None:intergenic | 50.0% | |
| ! | AAGTGCTTGCTACGTCCTCA+TGG | + | chr7.3:89445066-89445085 | MS.gene79674:intron | 50.0% |
| ! | TTTTCCTCCTCCGTAGGTTC+TGG | + | chr7.3:89442616-89442635 | MS.gene79674:CDS | 50.0% |
| !! | ATCTACGTTGGTGGCTCCTT+TGG | + | chr7.3:89444139-89444158 | MS.gene79674:intron | 50.0% |
| !! | CAGCTATTTTCCTCCTCCGT+AGG | + | chr7.3:89442610-89442629 | MS.gene79674:CDS | 50.0% |
| !! | GTTGGTGGCTCCTTTGGATA+AGG | + | chr7.3:89444145-89444164 | MS.gene79674:intron | 50.0% |
| !! | TCCTCCGTAGGTTCTGGTTT+CGG | + | chr7.3:89442622-89442641 | MS.gene79674:CDS | 50.0% |
| AGAACTGGGCCCGTTTGGAT+TGG | - | chr7.3:89444371-89444390 | None:intergenic | 55.0% | |
| ATTCAGGTCGGATGCGGTCA+TGG | + | chr7.3:89444508-89444527 | MS.gene79674:intron | 55.0% | |
| GAAACCAGAACCTACGGAGG+AGG | - | chr7.3:89442623-89442642 | None:intergenic | 55.0% | |
| TCAAGAGAACTGGGCCCGTT+TGG | - | chr7.3:89444376-89444395 | None:intergenic | 55.0% | |
| TCCGAAACCAGAACCTACGG+AGG | - | chr7.3:89442626-89442645 | None:intergenic | 55.0% | |
| TTGGAGTAGGCGGAGGAACT+CGG | + | chr7.3:89445121-89445140 | MS.gene79674:CDS | 55.0% | |
| TTTGTCGAGCTAGACGGCGA+TGG | - | chr7.3:89444742-89444761 | None:intergenic | 55.0% | |
| GGAGGACTGAAGCTGTGGGA+AGG | + | chr7.3:89443769-89443788 | MS.gene79674:intron | 60.0% | |
| ! | GGATGCGGTCATGGACTGCC+TGG | + | chr7.3:89444517-89444536 | MS.gene79674:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 89442470 | 89446177 | 89442470 | ID=MS.gene79674 |
| chr7.3 | mRNA | 89442470 | 89446177 | 89442470 | ID=MS.gene79674.t1;Parent=MS.gene79674 |
| chr7.3 | exon | 89442470 | 89442502 | 89442470 | ID=MS.gene79674.t1.exon1;Parent=MS.gene79674.t1 |
| chr7.3 | CDS | 89442470 | 89442502 | 89442470 | ID=cds.MS.gene79674.t1;Parent=MS.gene79674.t1 |
| chr7.3 | exon | 89442577 | 89442723 | 89442577 | ID=MS.gene79674.t1.exon2;Parent=MS.gene79674.t1 |
| chr7.3 | CDS | 89442577 | 89442723 | 89442577 | ID=cds.MS.gene79674.t1;Parent=MS.gene79674.t1 |
| chr7.3 | exon | 89442832 | 89442894 | 89442832 | ID=MS.gene79674.t1.exon3;Parent=MS.gene79674.t1 |
| chr7.3 | CDS | 89442832 | 89442894 | 89442832 | ID=cds.MS.gene79674.t1;Parent=MS.gene79674.t1 |
| chr7.3 | exon | 89443435 | 89443501 | 89443435 | ID=MS.gene79674.t1.exon4;Parent=MS.gene79674.t1 |
| chr7.3 | CDS | 89443435 | 89443501 | 89443435 | ID=cds.MS.gene79674.t1;Parent=MS.gene79674.t1 |
| chr7.3 | exon | 89443770 | 89443870 | 89443770 | ID=MS.gene79674.t1.exon5;Parent=MS.gene79674.t1 |
| chr7.3 | CDS | 89443770 | 89443870 | 89443770 | ID=cds.MS.gene79674.t1;Parent=MS.gene79674.t1 |
| chr7.3 | exon | 89444514 | 89444558 | 89444514 | ID=MS.gene79674.t1.exon6;Parent=MS.gene79674.t1 |
| chr7.3 | CDS | 89444514 | 89444558 | 89444514 | ID=cds.MS.gene79674.t1;Parent=MS.gene79674.t1 |
| chr7.3 | exon | 89444643 | 89444936 | 89444643 | ID=MS.gene79674.t1.exon7;Parent=MS.gene79674.t1 |
| chr7.3 | CDS | 89444643 | 89444936 | 89444643 | ID=cds.MS.gene79674.t1;Parent=MS.gene79674.t1 |
| chr7.3 | exon | 89445069 | 89445171 | 89445069 | ID=MS.gene79674.t1.exon8;Parent=MS.gene79674.t1 |
| chr7.3 | CDS | 89445069 | 89445171 | 89445069 | ID=cds.MS.gene79674.t1;Parent=MS.gene79674.t1 |
| chr7.3 | exon | 89446095 | 89446177 | 89446095 | ID=MS.gene79674.t1.exon9;Parent=MS.gene79674.t1 |
| chr7.3 | CDS | 89446095 | 89446177 | 89446095 | ID=cds.MS.gene79674.t1;Parent=MS.gene79674.t1 |
| Gene Sequence |
| Protein sequence |
