AlfalfaGEDB | MS.gene057060

M. sativa cultivar XinJiangDaYe / MS.gene057060

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057060.t1	XP_003617732.1	68	172	50	2	1	167	238	409	2.40E-45	192.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057060.t1	G7K4H5	68.0	172	50	2	1	167	238	409	1.7e-45	192.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene057060	0.817438	3.30E-52	-1.69E-46
MS.gene049297	MS.gene057060	0.810382	1.19E-50	-1.69E-46
MS.gene049404	MS.gene057060	0.837714	4.42E-57	-1.69E-46
MS.gene049435	MS.gene057060	0.802162	6.40E-49	-1.69E-46
MS.gene049821	MS.gene057060	0.821147	4.71E-53	-1.69E-46
MS.gene049824	MS.gene057060	0.806334	8.65E-50	-1.69E-46
MS.gene049825	MS.gene057060	0.820748	5.82E-53	-1.69E-46
MS.gene049850	MS.gene057060	0.803041	4.21E-49	-1.69E-46
MS.gene049873	MS.gene057060	0.83116	1.95E-55	-1.69E-46
MS.gene049877	MS.gene057060	0.810755	9.84E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057060.t1	MTR_5g094850	81.455	275	37	5	1	269	238	504	3.64e-138	399
MS.gene057060.t1	MTR_5g094850	73.723	274	37	5	1	269	238	481	2.35e-114	337
MS.gene057060.t1	MTR_5g094920	49.084	273	85	5	1	269	315	537	5.35e-55	186
MS.gene057060.t1	MTR_5g094960	48.305	236	80	4	1	236	239	432	6.02e-51	173
MS.gene057060.t1	MTR_5g094990	48.750	240	80	4	1	236	233	433	4.55e-42	150
MS.gene057060.t1	MTR_5g094950	47.500	240	90	3	1	234	307	516	1.52e-41	150
MS.gene057060.t1	MTR_5g095390	43.796	274	55	11	1	269	190	369	5.95e-41	145
MS.gene057060.t1	MTR_5g094910	39.869	153	46	3	84	236	243	349	1.09e-22	96.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 59 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGATCAAGGATGCTCA+AGG	0.628139	5.3:-77057613	MS.gene057060:CDS
ACCATCGGAGGAAGTAGAAG+TGG	0.600712	5.3:+77055892	None:intergenic
AGAAGTGGAGGTGGAAGTGG+AGG	0.504345	5.3:+77055907	None:intergenic
AGCCGGTGGAAGAGTGAAAC+TGG	0.434903	5.3:-77056143	MS.gene057060:CDS
AGGAAAACGGTTGAGATTAC+AGG	0.365163	5.3:-77056770	MS.gene057060:CDS
AGTACTCAGTCACCGAGCAA+AGG	0.588934	5.3:-77057631	MS.gene057060:CDS
AGTAGAAGTGGAGGTGGAAG+TGG	0.367803	5.3:+77055904	None:intergenic
ATCGAGACATGAACCATCGG+AGG	0.699092	5.3:+77055880	None:intergenic
ATCGGAGGAAGTAGAAGTGG+AGG	0.645940	5.3:+77055895	None:intergenic
ATTATCGAGACATGAACCAT+CGG	0.637556	5.3:+77055877	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAAAGATGAACCTTAGAG+AGG	+	chr5.3:77056647-77056666	None:intergenic	30.0%
AATTATCCCATATCAAGTGT+TGG	+	chr5.3:77056938-77056957	None:intergenic	30.0%
AATTCATAGTTATTAAGGGG+AGG	-	chr5.3:77057140-77057159	MS.gene057060:intron	30.0%
ACCAAATTAACCTAATATCC+CGG	+	chr5.3:77056578-77056597	None:intergenic	30.0%
ATATACTCCAACACTTGATA+TGG	-	chr5.3:77056928-77056947	MS.gene057060:intron	30.0%
TAGATAAACTCAATTAGCAC+CGG	-	chr5.3:77056556-77056575	MS.gene057060:intron	30.0%
TATACTCCAACACTTGATAT+GGG	-	chr5.3:77056929-77056948	MS.gene057060:intron	30.0%
TGTGTGATTGGATAAATGTT+TGG	-	chr5.3:77056342-77056361	MS.gene057060:intron	30.0%
TTATATTATTATGGGCTCTC+TGG	-	chr5.3:77056511-77056530	MS.gene057060:intron	30.0%
AAGGTTCATCATCAGGTATA+TGG	-	chr5.3:77056244-77056263	MS.gene057060:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	77055841	77058019	77055841	ID=MS.gene057060
chr5.3	mRNA	77055841	77058019	77055841	ID=MS.gene057060.t1;Parent=MS.gene057060
chr5.3	exon	77057602	77058019	77057602	ID=MS.gene057060.t1.exon1;Parent=MS.gene057060.t1
chr5.3	CDS	77057602	77058019	77057602	ID=cds.MS.gene057060.t1;Parent=MS.gene057060.t1
chr5.3	exon	77056759	77056827	77056759	ID=MS.gene057060.t1.exon2;Parent=MS.gene057060.t1
chr5.3	CDS	77056759	77056827	77056759	ID=cds.MS.gene057060.t1;Parent=MS.gene057060.t1
chr5.3	exon	77055841	77056163	77055841	ID=MS.gene057060.t1.exon3;Parent=MS.gene057060.t1
chr5.3	CDS	77055841	77056163	77055841	ID=cds.MS.gene057060.t1;Parent=MS.gene057060.t1

Gene Sequence

>MS.gene057060

ATGAGTGAGTTGAGGAATGAAAGCAGCAAATTGGCAGAGGAGAAGCGCGAAGCCGAGACATTACTTGAGGCTTTGAAGAGGAAGTTTATTCGACTGCGTGAAAGAGTAACAACGTTGGAGGAAGATCTCATTCTTTTGTCGGGCTTAGATGCCTCTATTGGTGGCAACAATGAGGGGGAGCCTTCTGCTGATCCAGTGGTTCCTAGTTCTGAAGAGAGCGAGGAAGAGCGTGTTCATGTGGTTGATCCTTTTGAAGATAACGAGGACGAGAATGCTGGTGAAGATGAGTTCATAAATGACATTGTTGACGAGGCTGCTCCTTTACCAATAAATCAAGATGATCATTACACTCTTGGAGTTGCTGCTAGTACTCAGTCACCGAGCAAAGGGATCAAGGATGCTCAAGGTTCATCATCAGGTATATGGAAATTATGCATGCATCTCTTATTCCTATATAGATATGCATTTCTGAATATTATTTTATAAGTATTGAATTCAATATGTGTGATTGGATAAATGTTTGGTCCAGTATGCTCAACTAGTGATTGAGACTTTGTCAAAAACAAAACTAGTGATTGAAACAGATCACATTGAAATACCATTAGCTAGTCATCATAATTTGCAATTACAGTATGACATAACTAGTACATACTCAATTAGCACCAGGATATTATATTATTATGGGCTCTCTGGATATTATATAACTTAGATAACTTAGATAAACTCAATTAGCACCGGGATATTAGGTTAATTTGGTCCTCTTTTGATAGAAGTTTAATTGTGATTTTTGAAGCTTCTTCCTTCCTCTCTAAGGTTCATCTTTATTCCATGTTACCTAGCCCAAGCTAGCTCTTGGCTCTCTTGTAGCTGGATCTGATTTTCCTAAGGAAATGTAAGTAGCATTGACAGGAACTGTGGAAGCTCAAACAAATCTTACTTAGAACTTAGAATGAGATGTGTTATATTATAGTAGCTATTTTCTGTTTCTGTTCTTTTTTTATCTTTCGAAACCATTTATTGTTTGTACTTTGAAGCTTGTTTAGAATACAATAGAATGTTCTTCTGTTTTGCACTTTCTCTTGTAGAGATATACTCCAACACTTGATATGGGATAATTGAGTGATTCTAAACATGCATTATTTCTTCATTTCACATGTTCCTTCAGACAGTTTTTTAGAACATTTTTCTGCAGGTGAAGAGTGTTGGATGGTATACGCTAGAAAGCCCAGGAAAACGGTTGAGATTACAGGGTCTTGTGGAGGTTAGTTATTCAGTAGCATGCAGAAGGTGTAGTGGAATAATTCATAGTTATTAAGGGGAGGTTTATTAGAGAATAGAGGATGTGAATGATTATTCACTTGTTCATGGAAAAGAAATATAGTGAAAATGTGTTTGGATTATCTGTTGAGGTTTGGTAGCAAGTGGATAAACTGTTTTTTGGATTATCTGTTGCGTTTTTCTTTTGATTTCTTCTCTTTCATATGTTTGATCTCTTCAAAAACTGTCAATCATCTTTTATGTGATTTCTTCCTCATCCCTTGAGGAAGCTTTCTTTCTGAAAAACAAAAATGAAAAACAAACAAAATCAGGTAAACACATTTTGTTTTTCTTAGGTAAACATGATTACAGAATGCCTGCTGTATATATTATCTGATATTTTGAATTTGATGAATCATATATAGTCAATTACTTGAAGATCCAGTGGCTGGATTTTCCTTGAAATGCTGAGGCTACTAGAAATGTTTTCATTGAAATAAAGAATCTACCGTACCTTATTTTTCAAGTTTTTGTTTGAGTATTATCATGTTTAGCAAACGTTAGTTATGTATGCTTAAACATATCTCTTTTTGGACCAGCCGGTGGAAGAGTGAAACTGGAAAATGAGATTGAGATCATAAACCTTGATGACAATGACGACGATGATGATCAATCTATGTCTCAAGGAGTACATATAAAGAAAGCTAGTTTTGGAATCACTGTGAAGATTGAAGAGCCAAGTTCATCAGCAGCACTGGCAACACAACAAAAAAGCAAATTTGCCAATGCAGTTGACACGGTCAAAAGAAAATTTTCTTTCAGCGACAGTGAAACCTCCACTTCCACCTCCACTTCTACTTCCTCCGATGGTTCATGTCTCGATAATCTTACAAGGTCTGATGCAAAAAAGAAAAAGATGTAG

Protein sequence

>MS.gene057060.t1

MSELRNESSKLAEEKREAETLLEALKRKFIRLRERVTTLEEDLILLSGLDASIGGNNEGEPSADPVVPSSEESEEERVHVVDPFEDNEDENAGEDEFINDIVDEAAPLPINQDDHYTLGVAASTQSPSKGIKDAQGSSSGEECWMVYARKPRKTVEITGSCGAGGRVKLENEIEIINLDDNDDDDDQSMSQGVHIKKASFGITVKIEEPSSSAALATQQKSKFANAVDTVKRKFSFSDSETSTSTSTSTSSDGSCLDNLTRSDAKKKKM