Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79700.t1 | XP_013444749.1 | 98 | 254 | 5 | 0 | 1 | 254 | 1 | 254 | 1.90E-137 | 498.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79700.t1 | A0A072TMQ2 | 98.0 | 254 | 5 | 0 | 1 | 254 | 1 | 254 | 1.4e-137 | 498.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056633 | MS.gene79700 | 0.809719 | 1.65E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79700.t1 | MTR_8g028425 | 98.031 | 254 | 5 | 0 | 1 | 254 | 1 | 254 | 0.0 | 520 |
| MS.gene79700.t1 | MTR_8g046460 | 51.934 | 181 | 81 | 3 | 65 | 244 | 54 | 229 | 3.28e-68 | 212 |
| MS.gene79700.t1 | MTR_2g064370 | 55.556 | 162 | 70 | 1 | 84 | 245 | 70 | 229 | 3.98e-65 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79700.t1 | AT2G46220 | 56.000 | 250 | 94 | 3 | 1 | 246 | 1 | 238 | 1.05e-95 | 281 |
| MS.gene79700.t1 | AT1G79510 | 55.689 | 167 | 71 | 2 | 79 | 244 | 71 | 235 | 4.16e-67 | 209 |
| MS.gene79700.t1 | AT1G79510 | 55.689 | 167 | 71 | 2 | 79 | 244 | 71 | 235 | 4.16e-67 | 209 |
| MS.gene79700.t1 | AT1G16320 | 50.829 | 181 | 81 | 3 | 72 | 245 | 56 | 235 | 2.21e-64 | 202 |
Find 56 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGAATTATTACTTGAATA+TGG | 0.136305 | 8.4:-67423030 | MS.gene79700:CDS |
| GGATCCTCTGAATACATTTA+TGG | 0.177889 | 8.4:-67420824 | MS.gene79700:CDS |
| TGAGGGGTAACGTGAATTTC+CGG | 0.243453 | 8.4:+67423275 | None:intergenic |
| AGAATTACAAATCGATCTTT+TGG | 0.258281 | 8.4:-67420795 | MS.gene79700:CDS |
| GCCTGTTGAGAATGTAATTA+TGG | 0.286889 | 8.4:-67420707 | MS.gene79700:CDS |
| CAGAATTATTACTTGAATAT+GGG | 0.350053 | 8.4:-67423029 | MS.gene79700:CDS |
| TATGCAAAATTGAACGCAAT+TGG | 0.355570 | 8.4:-67423200 | MS.gene79700:CDS |
| GATCCTCTGAATACATTTAT+GGG | 0.365683 | 8.4:-67420823 | MS.gene79700:CDS |
| ACGCAATTGGGTCAAAGAAC+AGG | 0.385908 | 8.4:-67423187 | MS.gene79700:CDS |
| CAGGGATGATATTGTATTGA+AGG | 0.391549 | 8.4:-67420845 | MS.gene79700:CDS |
| GAGGGGTAACGTGAATTTCC+GGG | 0.402324 | 8.4:+67423276 | None:intergenic |
| TTGCATAGGGTTTGAAATTG+TGG | 0.412813 | 8.4:+67423216 | None:intergenic |
| AACTTAGCTTTGATATCTAT+AGG | 0.428899 | 8.4:-67422956 | MS.gene79700:intron |
| ATGGTTCGCTGGACGGTTCA+CGG | 0.433992 | 8.4:-67420688 | MS.gene79700:CDS |
| GAAAGCCGCGGTAGGTTTGA+TGG | 0.435547 | 8.4:-67420646 | MS.gene79700:CDS |
| ACCATAATTACATTCTCAAC+AGG | 0.447606 | 8.4:+67420706 | None:intergenic |
| ATTTCAAAGTAAGTTGGTCC+TGG | 0.452612 | 8.4:+67420487 | None:intergenic |
| TGGTTCGCTGGACGGTTCAC+GGG | 0.459878 | 8.4:-67420687 | MS.gene79700:CDS |
| ATGCAAAATTGAACGCAATT+GGG | 0.472060 | 8.4:-67423199 | MS.gene79700:CDS |
| GAAGAATTGATTCAATCTCT+TGG | 0.484168 | 8.4:-67420523 | MS.gene79700:CDS |
| AGTTCTTTATAAAATAGATC+AGG | 0.492246 | 8.4:+67422975 | None:intergenic |
| CTTGGCTGTCCGCAGACCCC+AGG | 0.492505 | 8.4:-67420505 | MS.gene79700:CDS |
| TTATGCTATACGAACTTTGA+GGG | 0.497026 | 8.4:-67423006 | MS.gene79700:CDS |
| TTTCAAAGTAAGTTGGTCCT+GGG | 0.497418 | 8.4:+67420488 | None:intergenic |
| GAAGATATTTCAAAGTAAGT+TGG | 0.497988 | 8.4:+67420481 | None:intergenic |
| GTTATGCTATACGAACTTTG+AGG | 0.499486 | 8.4:-67423007 | MS.gene79700:CDS |
| GATTTCGAACCACTCTTCAC+CGG | 0.503377 | 8.4:+67423077 | None:intergenic |
| CGGCTTTCCCATGGAACTCG+TGG | 0.505084 | 8.4:+67420661 | None:intergenic |
| GATCGGAACGTGAAGCAGTA+TGG | 0.508351 | 8.4:-67423113 | MS.gene79700:CDS |
| TGTAATTATGGTTCGCTGGA+CGG | 0.510229 | 8.4:-67420695 | MS.gene79700:CDS |
| AGGCAAGATTTACGAACATC+GGG | 0.513299 | 8.4:-67420596 | MS.gene79700:CDS |
| ACGGGATCCCACGAGTTCCA+TGG | 0.525112 | 8.4:-67420669 | MS.gene79700:CDS |
| AACCTACCGCGGCTTTCCCA+TGG | 0.527295 | 8.4:+67420652 | None:intergenic |
| GAAGATTTCATGTGAAGTGA+AGG | 0.530001 | 8.4:-67423162 | MS.gene79700:CDS |
| AGAATGTAATTATGGTTCGC+TGG | 0.530985 | 8.4:-67420699 | MS.gene79700:CDS |
| CGGGATCCCACGAGTTCCAT+GGG | 0.531141 | 8.4:-67420668 | MS.gene79700:CDS |
| GACTCTTCTAGTACACTCCC+CGG | 0.556564 | 8.4:-67423294 | MS.gene79700:CDS |
| ACTGACATCACTTTAAACCT+AGG | 0.556783 | 8.4:+67420547 | None:intergenic |
| CGCAATTGGGTCAAAGAACA+GGG | 0.559140 | 8.4:-67423186 | MS.gene79700:CDS |
| GGCTTTCCCATGGAACTCGT+GGG | 0.560830 | 8.4:+67420662 | None:intergenic |
| ATATCTTGCCATGGAATCGA+AGG | 0.566004 | 8.4:+67420770 | None:intergenic |
| AAGGCAAGATTTACGAACAT+CGG | 0.568854 | 8.4:-67420597 | MS.gene79700:CDS |
| TTTGTCAAGTTTATACTCAG+AGG | 0.572049 | 8.4:+67420621 | None:intergenic |
| GACATCACTTTAAACCTAGG+AGG | 0.582014 | 8.4:+67420550 | None:intergenic |
| TAAGTTGGTCCTGGGGTCTG+CGG | 0.605321 | 8.4:+67420496 | None:intergenic |
| TTCAAAGTAAGTTGGTCCTG+GGG | 0.626091 | 8.4:+67420489 | None:intergenic |
| TAGGTTTAAAGTGATGTCAG+TGG | 0.634165 | 8.4:-67420545 | MS.gene79700:CDS |
| ATACCCATAAATGTATTCAG+AGG | 0.639929 | 8.4:+67420820 | None:intergenic |
| TGCTATACGAACTTTGAGGG+AGG | 0.642836 | 8.4:-67423003 | MS.gene79700:CDS |
| AGGGGTAACGTGAATTTCCG+GGG | 0.645824 | 8.4:+67423277 | None:intergenic |
| TTCCATGGGAAAGCCGCGGT+AGG | 0.661780 | 8.4:-67420654 | MS.gene79700:CDS |
| TGGTTCGAAATCGAGCAAAG+AGG | 0.665218 | 8.4:-67423066 | MS.gene79700:CDS |
| GAGTATAAACTTGACAAACA+AGG | 0.672357 | 8.4:-67420616 | MS.gene79700:CDS |
| CGAGTTCCATGGGAAAGCCG+CGG | 0.685486 | 8.4:-67420658 | MS.gene79700:CDS |
| AGGTTCCATCAAACCTACCG+CGG | 0.698339 | 8.4:+67420641 | None:intergenic |
| GGATAGACATAAACAGTGTG+TGG | 0.720922 | 8.4:-67420732 | MS.gene79700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGGTCAATTTAATTATT+TGG | - | chr8.4:67421757-67421776 | MS.gene79700:intron | 15.0% |
| !! | AATGGTCAATTTAATTATTT+GGG | - | chr8.4:67421758-67421777 | MS.gene79700:intron | 15.0% |
| !!! | ACATATTTGATTTCATATAT+TGG | + | chr8.4:67422751-67422770 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTATAACCTATAT+TGG | - | chr8.4:67421982-67422001 | MS.gene79700:intron | 15.0% |
| !!! | ATTTATAGTTGTGATATTTT+TGG | - | chr8.4:67421894-67421913 | MS.gene79700:intron | 15.0% |
| !!! | TTTTTCAACTTATTTTCATA+AGG | - | chr8.4:67421163-67421182 | MS.gene79700:intron | 15.0% |
| !! | AAATAAATTCATCCAGTTAT+GGG | + | chr8.4:67422413-67422432 | None:intergenic | 20.0% |
| !! | AATTAAATTGACCATTTATG+TGG | + | chr8.4:67421754-67421773 | None:intergenic | 20.0% |
| !! | ACAGAATTATTACTTGAATA+TGG | - | chr8.4:67420728-67420747 | MS.gene79700:CDS | 20.0% |
| !! | AGTTCTTTATAAAATAGATC+AGG | + | chr8.4:67420786-67420805 | None:intergenic | 20.0% |
| !! | ATGGTCAATTTAATTATTTG+GGG | - | chr8.4:67421759-67421778 | MS.gene79700:intron | 20.0% |
| !! | ATTAAATTGACCATTTATGT+GGG | + | chr8.4:67421753-67421772 | None:intergenic | 20.0% |
| !! | CAGAATTATTACTTGAATAT+GGG | - | chr8.4:67420729-67420748 | MS.gene79700:CDS | 20.0% |
| !! | TAGTGATAGAAATCAATATT+GGG | - | chr8.4:67421406-67421425 | MS.gene79700:intron | 20.0% |
| !! | TTAGCAAATGATTTATGAAT+TGG | - | chr8.4:67421529-67421548 | MS.gene79700:intron | 20.0% |
| !! | TTAGTGATAGAAATCAATAT+TGG | - | chr8.4:67421405-67421424 | MS.gene79700:intron | 20.0% |
| !! | TTTAGTGTAGAATGATAAAA+TGG | - | chr8.4:67420954-67420973 | MS.gene79700:intron | 20.0% |
| !!! | ATTTGATTTCATATATTGGA+TGG | + | chr8.4:67422747-67422766 | None:intergenic | 20.0% |
| ! | ATGACAAGTTTGACTATTTA+GGG | + | chr8.4:67421356-67421375 | None:intergenic | 25.0% |
| ! | GAAATAAATTCATCCAGTTA+TGG | + | chr8.4:67422414-67422433 | None:intergenic | 25.0% |
| ! | GAAGATATTTCAAAGTAAGT+TGG | + | chr8.4:67423280-67423299 | None:intergenic | 25.0% |
| ! | GAGTATAGAAAACATTGATA+TGG | + | chr8.4:67422849-67422868 | None:intergenic | 25.0% |
| ! | TTCTGTATTCAGAAAGAATT+TGG | - | chr8.4:67422183-67422202 | MS.gene79700:intron | 25.0% |
| ! | TTTGCTTACATTTATCTTGA+TGG | - | chr8.4:67422036-67422055 | MS.gene79700:intron | 25.0% |
| !! | AAATCAATATTGGGTTTTCA+AGG | - | chr8.4:67421415-67421434 | MS.gene79700:intron | 25.0% |
| !! | AATCAATATTGGGTTTTCAA+GGG | - | chr8.4:67421416-67421435 | MS.gene79700:intron | 25.0% |
| !! | AGAATTACAAATCGATCTTT+TGG | - | chr8.4:67422963-67422982 | MS.gene79700:CDS | 25.0% |
| !! | CCTTGCACTTAAATATTTTT+GGG | + | chr8.4:67421043-67421062 | None:intergenic | 25.0% |
| !!! | AACTTAGCTTTGATATCTAT+AGG | - | chr8.4:67420802-67420821 | MS.gene79700:CDS | 25.0% |
| !!! | AATATTTTTGGGAATAGAGT+AGG | + | chr8.4:67421032-67421051 | None:intergenic | 25.0% |
| !!! | ACAATTGTTGTTTTCTCATT+TGG | + | chr8.4:67422436-67422455 | None:intergenic | 25.0% |
| !!! | AGATATTTTTCAAAGCTTTG+TGG | - | chr8.4:67423005-67423024 | MS.gene79700:CDS | 25.0% |
| !!! | TCCTCTGAAATATAAAATGA+GGG | + | chr8.4:67422310-67422329 | None:intergenic | 25.0% |
| AACCCAATTAAAAGAGTAAC+AGG | + | chr8.4:67422258-67422277 | None:intergenic | 30.0% | |
| AATAACAAAGCAAGACTCAT+TGG | + | chr8.4:67421877-67421896 | None:intergenic | 30.0% | |
| AATACAGAAATGCAATGCTT+AGG | + | chr8.4:67422172-67422191 | None:intergenic | 30.0% | |
| ACCATAATTACATTCTCAAC+AGG | + | chr8.4:67423055-67423074 | None:intergenic | 30.0% | |
| AGTGAGTAAGCTATAAGTAA+AGG | + | chr8.4:67421965-67421984 | None:intergenic | 30.0% | |
| ATACCCATAAATGTATTCAG+AGG | + | chr8.4:67422941-67422960 | None:intergenic | 30.0% | |
| ATACTAGCCAAAGTAATAAG+AGG | - | chr8.4:67422231-67422250 | MS.gene79700:intron | 30.0% | |
| ATAGAGATTTGAATGCAAAG+AGG | - | chr8.4:67422558-67422577 | MS.gene79700:intron | 30.0% | |
| ATCATATTCAAAGCAAGTAG+TGG | + | chr8.4:67422778-67422797 | None:intergenic | 30.0% | |
| ATGCAAAATTGAACGCAATT+GGG | - | chr8.4:67420559-67420578 | MS.gene79700:CDS | 30.0% | |
| ATGTAACGTGTTAGTCAAAA+TGG | - | chr8.4:67421568-67421587 | MS.gene79700:intron | 30.0% | |
| ATTTCATATATTGGATGGAG+TGG | + | chr8.4:67422742-67422761 | None:intergenic | 30.0% | |
| CAAAATCATATACTGTCCAT+TGG | - | chr8.4:67422334-67422353 | MS.gene79700:intron | 30.0% | |
| CAACGACAACAATTAATAGA+GGG | + | chr8.4:67421681-67421700 | None:intergenic | 30.0% | |
| CATGACAAGTTTGACTATTT+AGG | + | chr8.4:67421357-67421376 | None:intergenic | 30.0% | |
| CCCAAAAATATTTAAGTGCA+AGG | - | chr8.4:67421040-67421059 | MS.gene79700:intron | 30.0% | |
| CTAAATAGTCAAACTTGTCA+TGG | - | chr8.4:67421355-67421374 | MS.gene79700:intron | 30.0% | |
| GAGTATAAACTTGACAAACA+AGG | - | chr8.4:67423142-67423161 | MS.gene79700:CDS | 30.0% | |
| GATCCTCTGAATACATTTAT+GGG | - | chr8.4:67422935-67422954 | MS.gene79700:intron | 30.0% | |
| GTGAGTAAGCTATAAGTAAA+GGG | + | chr8.4:67421964-67421983 | None:intergenic | 30.0% | |
| TAATGACCAAAGTTAGTAGA+GGG | + | chr8.4:67421595-67421614 | None:intergenic | 30.0% | |
| TATGCAAAATTGAACGCAAT+TGG | - | chr8.4:67420558-67420577 | MS.gene79700:CDS | 30.0% | |
| TCATATTCAAAGCAAGTAGT+GGG | + | chr8.4:67422777-67422796 | None:intergenic | 30.0% | |
| TTATGCTATACGAACTTTGA+GGG | - | chr8.4:67420752-67420771 | MS.gene79700:CDS | 30.0% | |
| TTTGTCAAGTTTATACTCAG+AGG | + | chr8.4:67423140-67423159 | None:intergenic | 30.0% | |
| ! | AATTGCGTTCAATTTTGCAT+AGG | + | chr8.4:67420559-67420578 | None:intergenic | 30.0% |
| ! | ACATCTCTTTTGTGTTTTTC+AGG | - | chr8.4:67422894-67422913 | MS.gene79700:intron | 30.0% |
| ! | ATTGCGTTCAATTTTGCATA+GGG | + | chr8.4:67420558-67420577 | None:intergenic | 30.0% |
| ! | CATCTCTTTTGTGTTTTTCA+GGG | - | chr8.4:67422895-67422914 | MS.gene79700:intron | 30.0% |
| ! | CTACTTGCTTTGAATATGAT+AGG | - | chr8.4:67422778-67422797 | MS.gene79700:intron | 30.0% |
| ! | CTTTGAAAAATATCTTGCCA+TGG | + | chr8.4:67423000-67423019 | None:intergenic | 30.0% |
| ! | GAAGAATTGATTCAATCTCT+TGG | - | chr8.4:67423235-67423254 | MS.gene79700:CDS | 30.0% |
| ! | GCCTTGCACTTAAATATTTT+TGG | + | chr8.4:67421044-67421063 | None:intergenic | 30.0% |
| ! | TTGCTTTGAATATGATAGGT+TGG | - | chr8.4:67422782-67422801 | MS.gene79700:intron | 30.0% |
| !! | AATATGATAGGTTGGTTACT+TGG | - | chr8.4:67422790-67422809 | MS.gene79700:intron | 30.0% |
| !! | AATTTTCGAGAATTAGGGAT+AGG | + | chr8.4:67420522-67420541 | None:intergenic | 30.0% |
| !! | ATTTTCGAGAATTAGGGATA+GGG | + | chr8.4:67420521-67420540 | None:intergenic | 30.0% |
| !! | CCTCTGAAATATAAAATGAG+GGG | + | chr8.4:67422309-67422328 | None:intergenic | 30.0% |
| !! | CTCCTCTGAAATATAAAATG+AGG | + | chr8.4:67422311-67422330 | None:intergenic | 30.0% |
| !! | GACCTGTTACTCTTTTAATT+GGG | - | chr8.4:67422253-67422272 | MS.gene79700:intron | 30.0% |
| !! | TGTGGAATTTTCGAGAATTA+GGG | + | chr8.4:67420527-67420546 | None:intergenic | 30.0% |
| !! | TTGTGGAATTTTCGAGAATT+AGG | + | chr8.4:67420528-67420547 | None:intergenic | 30.0% |
| !!! | GATGATTTTTTAGCGTAGAA+TGG | - | chr8.4:67420874-67420893 | MS.gene79700:intron | 30.0% |
| AAATTCATCCAGTTATGGGA+TGG | + | chr8.4:67422409-67422428 | None:intergenic | 35.0% | |
| AACAGGTCCTCTTATTACTT+TGG | + | chr8.4:67422241-67422260 | None:intergenic | 35.0% | |
| AAGGCAAGATTTACGAACAT+CGG | - | chr8.4:67423161-67423180 | MS.gene79700:CDS | 35.0% | |
| AATGACCAAAGTTAGTAGAG+GGG | + | chr8.4:67421594-67421613 | None:intergenic | 35.0% | |
| AATTCATCCAGTTATGGGAT+GGG | + | chr8.4:67422408-67422427 | None:intergenic | 35.0% | |
| AATTTGGCTAGAGTGTATTG+AGG | - | chr8.4:67422199-67422218 | MS.gene79700:intron | 35.0% | |
| ACGACCTTTGGCATAATATA+AGG | + | chr8.4:67422118-67422137 | None:intergenic | 35.0% | |
| ACTGACATCACTTTAAACCT+AGG | + | chr8.4:67423214-67423233 | None:intergenic | 35.0% | |
| AGAATGTAATTATGGTTCGC+TGG | - | chr8.4:67423059-67423078 | MS.gene79700:CDS | 35.0% | |
| ATAGTCAAACTTGTCATGGA+AGG | - | chr8.4:67421359-67421378 | MS.gene79700:intron | 35.0% | |
| ATATTTGGAAGGGATCAGTA+GGG | - | chr8.4:67422646-67422665 | MS.gene79700:intron | 35.0% | |
| ATTTGGGGAACTAATTGTGT+TGG | - | chr8.4:67421774-67421793 | MS.gene79700:intron | 35.0% | |
| CACAAAAGAGATGTTATAGC+AGG | + | chr8.4:67422888-67422907 | None:intergenic | 35.0% | |
| CAGGGATGATATTGTATTGA+AGG | - | chr8.4:67422913-67422932 | MS.gene79700:intron | 35.0% | |
| CCAACGACAACAATTAATAG+AGG | + | chr8.4:67421682-67421701 | None:intergenic | 35.0% | |
| CCTCTATTAATTGTTGTCGT+TGG | - | chr8.4:67421679-67421698 | MS.gene79700:intron | 35.0% | |
| CTAATGACCAAAGTTAGTAG+AGG | + | chr8.4:67421596-67421615 | None:intergenic | 35.0% | |
| GAAGATTTCATGTGAAGTGA+AGG | - | chr8.4:67420596-67420615 | MS.gene79700:CDS | 35.0% | |
| GACTAACACGTTACATTTCA+AGG | + | chr8.4:67421564-67421583 | None:intergenic | 35.0% | |
| GCCTGTTGAGAATGTAATTA+TGG | - | chr8.4:67423051-67423070 | MS.gene79700:CDS | 35.0% | |
| GGATCCTCTGAATACATTTA+TGG | - | chr8.4:67422934-67422953 | MS.gene79700:intron | 35.0% | |
| GTCACCTTATATTATGCCAA+AGG | - | chr8.4:67422111-67422130 | MS.gene79700:intron | 35.0% | |
| GTTATGCTATACGAACTTTG+AGG | - | chr8.4:67420751-67420770 | MS.gene79700:CDS | 35.0% | |
| TAGAACCCACATATTTGGAA+GGG | - | chr8.4:67422636-67422655 | MS.gene79700:intron | 35.0% | |
| TATCAATTAGCATGCCACAT+GGG | - | chr8.4:67421816-67421835 | MS.gene79700:intron | 35.0% | |
| TCCATCATGATAGCCAATAT+AGG | + | chr8.4:67421998-67422017 | None:intergenic | 35.0% | |
| TGACGCGTTAAATGTTCATT+TGG | - | chr8.4:67421627-67421646 | MS.gene79700:intron | 35.0% | |
| TTAGAACCCACATATTTGGA+AGG | - | chr8.4:67422635-67422654 | MS.gene79700:intron | 35.0% | |
| TTATCAATTAGCATGCCACA+TGG | - | chr8.4:67421815-67421834 | MS.gene79700:intron | 35.0% | |
| ! | ACCTATATTGGCTATCATGA+TGG | - | chr8.4:67421994-67422013 | MS.gene79700:intron | 35.0% |
| ! | ATGTGAAGTGAAGGATTTTG+CGG | - | chr8.4:67420605-67420624 | MS.gene79700:CDS | 35.0% |
| ! | CCCCTCATTTTATATTTCAG+AGG | - | chr8.4:67422306-67422325 | MS.gene79700:intron | 35.0% |
| ! | CGATTTAGAACCCACATATT+TGG | - | chr8.4:67422631-67422650 | MS.gene79700:intron | 35.0% |
| ! | GAAGCAGTATGGTCAATTTT+CGG | - | chr8.4:67420656-67420675 | MS.gene79700:CDS | 35.0% |
| ! | GGACCTGTTACTCTTTTAAT+TGG | - | chr8.4:67422252-67422271 | MS.gene79700:intron | 35.0% |
| ! | TAGGTTTAAAGTGATGTCAG+TGG | - | chr8.4:67423213-67423232 | MS.gene79700:CDS | 35.0% |
| ! | TTGCATAGGGTTTGAAATTG+TGG | + | chr8.4:67420545-67420564 | None:intergenic | 35.0% |
| !! | ATTTCAAAGTAAGTTGGTCC+TGG | + | chr8.4:67423274-67423293 | None:intergenic | 35.0% |
| !! | TTGCTTTTAACAAACCTCCT+AGG | - | chr8.4:67423194-67423213 | MS.gene79700:CDS | 35.0% |
| !! | TTTCAAAGTAAGTTGGTCCT+GGG | + | chr8.4:67423273-67423292 | None:intergenic | 35.0% |
| !!! | GATTTTGCGGTTTTGGAATT+GGG | - | chr8.4:67420618-67420637 | MS.gene79700:CDS | 35.0% |
| !!! | TTTTGGAATTGGGTTTGGAT+CGG | - | chr8.4:67420628-67420647 | MS.gene79700:CDS | 35.0% |
| AAAGGCCCTAAGAATGTCTT+TGG | + | chr8.4:67422672-67422691 | None:intergenic | 40.0% | |
| ACAAGCATGTCCAAAGACAA+AGG | + | chr8.4:67422690-67422709 | None:intergenic | 40.0% | |
| ACTGATCCCTTCCAAATATG+TGG | + | chr8.4:67422645-67422664 | None:intergenic | 40.0% | |
| AGGCAAGATTTACGAACATC+GGG | - | chr8.4:67423162-67423181 | MS.gene79700:CDS | 40.0% | |
| ATATCTTGCCATGGAATCGA+AGG | + | chr8.4:67422991-67423010 | None:intergenic | 40.0% | |
| ATATTGGATGGAGTGGAAAG+AGG | + | chr8.4:67422735-67422754 | None:intergenic | 40.0% | |
| ATCAATTAGCATGCCACATG+GGG | - | chr8.4:67421817-67421836 | MS.gene79700:intron | 40.0% | |
| ATTCTTAGGGCCTTTGTCTT+TGG | - | chr8.4:67422677-67422696 | MS.gene79700:intron | 40.0% | |
| CATATTTGGAAGGGATCAGT+AGG | - | chr8.4:67422645-67422664 | MS.gene79700:intron | 40.0% | |
| CGCGACACATTAAATGAACA+CGG | - | chr8.4:67421711-67421730 | MS.gene79700:intron | 40.0% | |
| CTGATCCCTTCCAAATATGT+GGG | + | chr8.4:67422644-67422663 | None:intergenic | 40.0% | |
| GACATCACTTTAAACCTAGG+AGG | + | chr8.4:67423211-67423230 | None:intergenic | 40.0% | |
| GGATAGACATAAACAGTGTG+TGG | - | chr8.4:67423026-67423045 | MS.gene79700:CDS | 40.0% | |
| GGTTGTTAGAAGTTAGGAGT+AGG | - | chr8.4:67422372-67422391 | MS.gene79700:intron | 40.0% | |
| TAAACAAGCACAACGACCTT+TGG | + | chr8.4:67422130-67422149 | None:intergenic | 40.0% | |
| TAGGGCCAAAGACATTCTTA+GGG | - | chr8.4:67422664-67422683 | MS.gene79700:intron | 40.0% | |
| TGTAATTATGGTTCGCTGGA+CGG | - | chr8.4:67423063-67423082 | MS.gene79700:CDS | 40.0% | |
| TTGAGTTTATTGCAGCAGCA+GGG | - | chr8.4:67422456-67422475 | MS.gene79700:intron | 40.0% | |
| ! | AAACAGCATTGAGCATGACA+AGG | + | chr8.4:67422607-67422626 | None:intergenic | 40.0% |
| ! | AGTGAAGGATTTTGCGGTTT+TGG | - | chr8.4:67420611-67420630 | MS.gene79700:CDS | 40.0% |
| ! | GTATGGTCAATTTTCGGTTC+CGG | - | chr8.4:67420662-67420681 | MS.gene79700:CDS | 40.0% |
| ! | TACTGTCCATTGGTTGAGTT+AGG | - | chr8.4:67422344-67422363 | MS.gene79700:intron | 40.0% |
| ! | TTTGAGTTTATTGCAGCAGC+AGG | - | chr8.4:67422455-67422474 | MS.gene79700:intron | 40.0% |
| !! | ATAGGGTTTTGTGCGAATTG+AGG | + | chr8.4:67420504-67420523 | None:intergenic | 40.0% |
| !! | TAATAGAGGGAGCATTAACG+TGG | + | chr8.4:67421668-67421687 | None:intergenic | 40.0% |
| !! | TAGGGTTTTGTGCGAATTGA+GGG | + | chr8.4:67420503-67420522 | None:intergenic | 40.0% |
| !! | TTCAAAGTAAGTTGGTCCTG+GGG | + | chr8.4:67423272-67423291 | None:intergenic | 40.0% |
| !!! | GGATTTTGCGGTTTTGGAAT+TGG | - | chr8.4:67420617-67420636 | MS.gene79700:CDS | 40.0% |
| !!! | TTTTGGAACCTTCGATTCCA+TGG | - | chr8.4:67422980-67422999 | MS.gene79700:CDS | 40.0% |
| AACTGTTCCCATCCCATAAC+TGG | - | chr8.4:67422398-67422417 | MS.gene79700:intron | 45.0% | |
| AATGGCCCCTCTACTAACTT+TGG | - | chr8.4:67421586-67421605 | MS.gene79700:intron | 45.0% | |
| ACGCAATTGGGTCAAAGAAC+AGG | - | chr8.4:67420571-67420590 | MS.gene79700:CDS | 45.0% | |
| AGAGAGAGGATGGGGAATTA+TGG | - | chr8.4:67422494-67422513 | MS.gene79700:intron | 45.0% | |
| AGAGAGGATGGGGAATTATG+GGG | - | chr8.4:67422496-67422515 | MS.gene79700:intron | 45.0% | |
| CCATTTATGTGGGAACCCAA+CGG | + | chr8.4:67421743-67421762 | None:intergenic | 45.0% | |
| CGCAATTGGGTCAAAGAACA+GGG | - | chr8.4:67420572-67420591 | MS.gene79700:CDS | 45.0% | |
| GAGAGAGGATGGGGAATTAT+GGG | - | chr8.4:67422495-67422514 | MS.gene79700:intron | 45.0% | |
| GATTTCGAACCACTCTTCAC+CGG | + | chr8.4:67420684-67420703 | None:intergenic | 45.0% | |
| GCATTAACGTGGTATCCACA+TGG | + | chr8.4:67421657-67421676 | None:intergenic | 45.0% | |
| GTAGGGCCAAAGACATTCTT+AGG | - | chr8.4:67422663-67422682 | MS.gene79700:intron | 45.0% | |
| TAACGTGGTATCCACATGGA+AGG | + | chr8.4:67421653-67421672 | None:intergenic | 45.0% | |
| TGAGGGGTAACGTGAATTTC+CGG | + | chr8.4:67420486-67420505 | None:intergenic | 45.0% | |
| TGGTTCGAAATCGAGCAAAG+AGG | - | chr8.4:67420692-67420711 | MS.gene79700:CDS | 45.0% | |
| TTTATTGCAGCAGCAGGGTA+GGG | - | chr8.4:67422461-67422480 | MS.gene79700:intron | 45.0% | |
| ! | CATTGGTTGAGTTAGGCAAC+GGG | - | chr8.4:67422351-67422370 | MS.gene79700:intron | 45.0% |
| ! | CCATTGGTTGAGTTAGGCAA+CGG | - | chr8.4:67422350-67422369 | MS.gene79700:intron | 45.0% |
| ! | TGCTATACGAACTTTGAGGG+AGG | - | chr8.4:67420755-67420774 | MS.gene79700:CDS | 45.0% |
| ! | TGTTCATTTGGCCTTCCATG+TGG | - | chr8.4:67421639-67421658 | MS.gene79700:intron | 45.0% |
| !! | AGGGTTTTGTGCGAATTGAG+GGG | + | chr8.4:67420502-67420521 | None:intergenic | 45.0% |
| !! | GCAACGGGTTGTTAGAAGTT+AGG | - | chr8.4:67422366-67422385 | MS.gene79700:intron | 45.0% |
| !!! | TGCGGTTTTGGAATTGGGTT+TGG | - | chr8.4:67420623-67420642 | MS.gene79700:CDS | 45.0% |
| !!! | TGCTTGTTTTGCAGAGCTTC+AGG | - | chr8.4:67422703-67422722 | MS.gene79700:intron | 45.0% |
| AGGGGTAACGTGAATTTCCG+GGG | + | chr8.4:67420484-67420503 | None:intergenic | 50.0% | |
| AGGGGTAGAAAGAGAGAGGA+TGG | - | chr8.4:67422484-67422503 | MS.gene79700:intron | 50.0% | |
| AGGTTCCATCAAACCTACCG+CGG | + | chr8.4:67423120-67423139 | None:intergenic | 50.0% | |
| CCGTTGCCTAACTCAACCAA+TGG | + | chr8.4:67422353-67422372 | None:intergenic | 50.0% | |
| CCGTTGGGTTCCCACATAAA+TGG | - | chr8.4:67421740-67421759 | MS.gene79700:intron | 50.0% | |
| GAATGCAAAGAGGATCAGCG+AGG | - | chr8.4:67422568-67422587 | MS.gene79700:intron | 50.0% | |
| GACTCTTCTAGTACACTCCC+CGG | - | chr8.4:67420464-67420483 | MS.gene79700:CDS | 50.0% | |
| GAGAGGATGGGGAATTATGG+GGG | - | chr8.4:67422497-67422516 | MS.gene79700:intron | 50.0% | |
| GAGGGGTAACGTGAATTTCC+GGG | + | chr8.4:67420485-67420504 | None:intergenic | 50.0% | |
| GATCGGAACGTGAAGCAGTA+TGG | - | chr8.4:67420645-67420664 | MS.gene79700:CDS | 50.0% | |
| GATGGAGTGGAAAGAGGCTT+AGG | + | chr8.4:67422729-67422748 | None:intergenic | 50.0% | |
| GGGGTAGAAAGAGAGAGGAT+GGG | - | chr8.4:67422485-67422504 | MS.gene79700:intron | 50.0% | |
| GGGTAGAAAGAGAGAGGATG+GGG | - | chr8.4:67422486-67422505 | MS.gene79700:intron | 50.0% | |
| GTTTATTGCAGCAGCAGGGT+AGG | - | chr8.4:67422460-67422479 | MS.gene79700:intron | 50.0% | |
| TTATGTGGGAACCCAACGGA+AGG | + | chr8.4:67421739-67421758 | None:intergenic | 50.0% | |
| ! | TTTTCGGTTCCGGTGAAGAG+TGG | - | chr8.4:67420672-67420691 | MS.gene79700:CDS | 50.0% |
| !! | GCCACATGGGGTATTGAAGT+GGG | - | chr8.4:67421829-67421848 | MS.gene79700:intron | 50.0% |
| !! | TGCCACATGGGGTATTGAAG+TGG | - | chr8.4:67421828-67421847 | MS.gene79700:intron | 50.0% |
| AGGGAGGGGTAGAAAGAGAG+AGG | - | chr8.4:67422480-67422499 | MS.gene79700:intron | 55.0% | |
| ATGAACACGGAGCCTTCCGT+TGG | - | chr8.4:67421724-67421743 | MS.gene79700:intron | 55.0% | |
| ATGGTTCGCTGGACGGTTCA+CGG | - | chr8.4:67423070-67423089 | MS.gene79700:CDS | 55.0% | |
| GAAAGCCGCGGTAGGTTTGA+TGG | - | chr8.4:67423112-67423131 | MS.gene79700:CDS | 55.0% | |
| GCCCACTTCAATACCCCATG+TGG | + | chr8.4:67421833-67421852 | None:intergenic | 55.0% | |
| GGCTTTCCCATGGAACTCGT+GGG | + | chr8.4:67423099-67423118 | None:intergenic | 55.0% | |
| TGAACACGGAGCCTTCCGTT+GGG | - | chr8.4:67421725-67421744 | MS.gene79700:intron | 55.0% | |
| !! | AGGATCAGCGAGGCATTGCA+TGG | - | chr8.4:67422578-67422597 | MS.gene79700:intron | 55.0% |
| !! | TAAGTTGGTCCTGGGGTCTG+CGG | + | chr8.4:67423265-67423284 | None:intergenic | 55.0% |
| AACCTACCGCGGCTTTCCCA+TGG | + | chr8.4:67423109-67423128 | None:intergenic | 60.0% | |
| ACGGGATCCCACGAGTTCCA+TGG | - | chr8.4:67423089-67423108 | MS.gene79700:CDS | 60.0% | |
| ATTGCAGCAGCAGGGTAGGG+AGG | - | chr8.4:67422464-67422483 | MS.gene79700:intron | 60.0% | |
| CGAGTTCCATGGGAAAGCCG+CGG | - | chr8.4:67423100-67423119 | MS.gene79700:CDS | 60.0% | |
| CGGCTTTCCCATGGAACTCG+TGG | + | chr8.4:67423100-67423119 | None:intergenic | 60.0% | |
| CGGGATCCCACGAGTTCCAT+GGG | - | chr8.4:67423090-67423109 | MS.gene79700:CDS | 60.0% | |
| TGGTTCGCTGGACGGTTCAC+GGG | - | chr8.4:67423071-67423090 | MS.gene79700:CDS | 60.0% | |
| TTCCATGGGAAAGCCGCGGT+AGG | - | chr8.4:67423104-67423123 | MS.gene79700:CDS | 60.0% | |
| TTGCAGCAGCAGGGTAGGGA+GGG | - | chr8.4:67422465-67422484 | MS.gene79700:intron | 60.0% | |
| TGCAGCAGCAGGGTAGGGAG+GGG | - | chr8.4:67422466-67422485 | MS.gene79700:intron | 65.0% | |
| CTTGGCTGTCCGCAGACCCC+AGG | - | chr8.4:67423253-67423272 | MS.gene79700:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 67420462 | 67423318 | 67420462 | ID=MS.gene79700 |
| chr8.4 | mRNA | 67420462 | 67423318 | 67420462 | ID=MS.gene79700.t1;Parent=MS.gene79700 |
| chr8.4 | exon | 67422957 | 67423318 | 67422957 | ID=MS.gene79700.t1.exon1;Parent=MS.gene79700.t1 |
| chr8.4 | CDS | 67422957 | 67423318 | 67422957 | ID=cds.MS.gene79700.t1;Parent=MS.gene79700.t1 |
| chr8.4 | exon | 67420462 | 67420864 | 67420462 | ID=MS.gene79700.t1.exon2;Parent=MS.gene79700.t1 |
| chr8.4 | CDS | 67420462 | 67420864 | 67420462 | ID=cds.MS.gene79700.t1;Parent=MS.gene79700.t1 |
| Gene Sequence |
| Protein sequence |
