Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79807.t1 | XP_003601776.1 | 99 | 286 | 3 | 0 | 1 | 286 | 1 | 286 | 1.90E-162 | 581.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79807.t1 | Q9C7F9 | 61.5 | 270 | 102 | 2 | 8 | 276 | 6 | 274 | 2.5e-89 | 330.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79807.t1 | G7JBY4 | 99.0 | 286 | 3 | 0 | 1 | 286 | 1 | 286 | 1.4e-162 | 581.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050649 | MS.gene79807 | 0.811651 | 6.29E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79807.t1 | MTR_3g085270 | 98.951 | 286 | 3 | 0 | 1 | 286 | 1 | 286 | 0.0 | 594 |
| MS.gene79807.t1 | MTR_8g080660 | 64.384 | 292 | 95 | 2 | 2 | 286 | 8 | 297 | 3.70e-141 | 399 |
| MS.gene79807.t1 | MTR_7g029100 | 56.828 | 227 | 77 | 4 | 62 | 286 | 72 | 279 | 2.00e-82 | 249 |
| MS.gene79807.t1 | MTR_3g005710 | 41.132 | 265 | 141 | 4 | 21 | 274 | 25 | 285 | 8.71e-67 | 210 |
| MS.gene79807.t1 | MTR_4g485570 | 39.738 | 229 | 129 | 6 | 63 | 286 | 69 | 293 | 7.72e-55 | 180 |
| MS.gene79807.t1 | MTR_4g485560 | 39.556 | 225 | 127 | 6 | 67 | 286 | 23 | 243 | 2.77e-53 | 174 |
| MS.gene79807.t1 | MTR_4g094895 | 35.206 | 267 | 165 | 6 | 24 | 286 | 34 | 296 | 4.57e-52 | 172 |
| MS.gene79807.t1 | MTR_4g102900 | 41.053 | 190 | 104 | 4 | 99 | 286 | 113 | 296 | 7.65e-46 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79807.t1 | AT1G67330 | 60.284 | 282 | 105 | 5 | 9 | 286 | 13 | 291 | 1.77e-118 | 342 |
| MS.gene79807.t1 | AT1G27930 | 60.806 | 273 | 99 | 3 | 8 | 276 | 6 | 274 | 3.91e-115 | 333 |
| MS.gene79807.t1 | AT1G71690 | 41.837 | 294 | 155 | 6 | 6 | 286 | 4 | 294 | 1.16e-76 | 235 |
| MS.gene79807.t1 | AT1G09610 | 43.726 | 263 | 134 | 6 | 26 | 282 | 20 | 274 | 1.11e-68 | 214 |
| MS.gene79807.t1 | AT4G09990 | 41.096 | 292 | 156 | 8 | 1 | 286 | 1 | 282 | 1.63e-68 | 214 |
| MS.gene79807.t1 | AT1G33800 | 48.402 | 219 | 108 | 3 | 68 | 286 | 76 | 289 | 1.68e-66 | 209 |
| MS.gene79807.t1 | AT5G67210 | 36.101 | 277 | 167 | 7 | 15 | 286 | 32 | 303 | 1.46e-55 | 182 |
| MS.gene79807.t1 | AT2G15440 | 39.535 | 215 | 122 | 4 | 66 | 275 | 79 | 290 | 2.43e-54 | 179 |
| MS.gene79807.t1 | AT3G50220 | 38.431 | 255 | 141 | 6 | 36 | 286 | 68 | 310 | 2.03e-52 | 174 |
| MS.gene79807.t1 | AT4G24910 | 37.379 | 206 | 122 | 5 | 85 | 286 | 105 | 307 | 6.28e-42 | 147 |
Find 80 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACGGTTTGAACCCATTT+AGG | 0.226115 | 3.4:-79597554 | None:intergenic |
| TGTAAGAAGAATTTGGTTAA+AGG | 0.260328 | 3.4:+79597938 | MS.gene79807:CDS |
| ATTTCTTTGTAAGAAGAATT+TGG | 0.261256 | 3.4:+79597931 | MS.gene79807:CDS |
| TCCTTGAAGAAGATCCTAAA+TGG | 0.262294 | 3.4:+79597540 | MS.gene79807:CDS |
| TTTCAGATAGCACCGTTTAA+TGG | 0.271225 | 3.4:+79597980 | MS.gene79807:CDS |
| TTCATAGGATTAACAACAAT+TGG | 0.323694 | 3.4:+79597209 | MS.gene79807:CDS |
| AACTTTCTTGTCTTCGGACT+TGG | 0.333037 | 3.4:+79597467 | MS.gene79807:CDS |
| CCATGCAACTTTCTTGTCTT+CGG | 0.337891 | 3.4:+79597461 | MS.gene79807:CDS |
| CTATGAATAGCTTTCTTTGT+TGG | 0.342361 | 3.4:-79597193 | None:intergenic |
| GATTGTTGTCGTCGTTTGAT+CGG | 0.356331 | 3.4:-79597325 | None:intergenic |
| GTTTGATCGGGCTCGGATCC+CGG | 0.384818 | 3.4:-79597312 | None:intergenic |
| GGGTATTTCGCGGAGGCGCC+AGG | 0.390614 | 3.4:+79597791 | MS.gene79807:CDS |
| AAGAATTTGGTTAAAGGTGT+TGG | 0.392806 | 3.4:+79597944 | MS.gene79807:CDS |
| AGTGAAGAATTGCTCTTAGT+TGG | 0.396131 | 3.4:-79597358 | None:intergenic |
| CCCATTTAGGATCTTCTTCA+AGG | 0.404742 | 3.4:-79597541 | None:intergenic |
| CTGCTGTTATGGCGAGGAAT+AGG | 0.404951 | 3.4:+79597837 | MS.gene79807:CDS |
| TTAAAGGTGTTGGAAGGCTT+TGG | 0.416618 | 3.4:+79597954 | MS.gene79807:CDS |
| CCACGTAGAAAAGCTTTAGA+AGG | 0.421281 | 3.4:-79597680 | None:intergenic |
| ATTGTTGTCGTCGTTTGATC+GGG | 0.421366 | 3.4:-79597324 | None:intergenic |
| CGCGGAGGCGCCAGGGAGAA+TGG | 0.423436 | 3.4:+79597799 | MS.gene79807:CDS |
| CAACAAAGAAAGCTATTCAT+AGG | 0.424712 | 3.4:+79597194 | MS.gene79807:CDS |
| GCTCGGATCCCGGATGAGAT+TGG | 0.441437 | 3.4:-79597302 | None:intergenic |
| CTACATTGTCCAATCTCATC+CGG | 0.443494 | 3.4:+79597293 | MS.gene79807:CDS |
| TCCGTATCGTAAACTTCATC+AGG | 0.452180 | 3.4:-79597737 | None:intergenic |
| TGTCGTCGTTTGATCGGGCT+CGG | 0.479630 | 3.4:-79597319 | None:intergenic |
| GTTGGAGAGGATAATAATAA+CGG | 0.482855 | 3.4:-79597175 | None:intergenic |
| ACGGTATGGGCTCGAAGGCC+CGG | 0.484670 | 3.4:-79597587 | None:intergenic |
| GCCTCCGCGAAATACCCTTT+CGG | 0.484707 | 3.4:-79597785 | None:intergenic |
| AACCGTTCTTAAAGATGCAC+CGG | 0.491873 | 3.4:+79597568 | MS.gene79807:CDS |
| GTGTTCGATAACGAACGGTA+TGG | 0.493080 | 3.4:-79597601 | None:intergenic |
| GGAGAATCAGTGCCATTAAA+CGG | 0.493722 | 3.4:-79597992 | None:intergenic |
| CCTTGAAGAAGATCCTAAAT+GGG | 0.498579 | 3.4:+79597541 | MS.gene79807:CDS |
| GCTCTTAGTTGGATCGGTGA+TGG | 0.508293 | 3.4:-79597347 | None:intergenic |
| ACCTGATGAAGTTTACGATA+CGG | 0.512674 | 3.4:+79597736 | MS.gene79807:CDS |
| AGATGAGTTTGTTAGCTTCA+CGG | 0.513693 | 3.4:-79597628 | None:intergenic |
| ACGTGTTGTTCCTCAACAAT+CGG | 0.515353 | 3.4:+79597391 | MS.gene79807:CDS |
| TGTTCGATAACGAACGGTAT+GGG | 0.516854 | 3.4:-79597600 | None:intergenic |
| GCGAGGAATAGGAAGGGATC+TGG | 0.518470 | 3.4:+79597848 | MS.gene79807:CDS |
| TTGGCCATGATTCTCTCATG+TGG | 0.520423 | 3.4:+79597486 | MS.gene79807:CDS |
| AACACCGCCGCCATTCTCCC+TGG | 0.524125 | 3.4:-79597809 | None:intergenic |
| GGCGCCAGGGAGAATGGCGG+CGG | 0.526822 | 3.4:+79597805 | MS.gene79807:CDS |
| TGGCCATGATTCTCTCATGT+GGG | 0.532593 | 3.4:+79597487 | MS.gene79807:CDS |
| ATTTGGTTAAAGGTGTTGGA+AGG | 0.535401 | 3.4:+79597948 | MS.gene79807:CDS |
| ATCTCTGAGACCGATTGTTG+AGG | 0.537003 | 3.4:-79597401 | None:intergenic |
| AGGAACAATGTGTTACCACC+TGG | 0.539699 | 3.4:-79597521 | None:intergenic |
| AATAGCTTTCTTTGTTGGAG+AGG | 0.540307 | 3.4:-79597188 | None:intergenic |
| TTTACATGATGTGGATCGTA+GGG | 0.546413 | 3.4:+79597886 | MS.gene79807:CDS |
| GCCACAGCGATCACAACCTT+CGG | 0.546985 | 3.4:+79597257 | MS.gene79807:CDS |
| CATAGGTTCCTTGCGGTAGG+AGG | 0.561581 | 3.4:-79597651 | None:intergenic |
| GGTATTTCGCGGAGGCGCCA+GGG | 0.561953 | 3.4:+79597792 | MS.gene79807:CDS |
| GCTTTAGAAGGTGAACACAT+AGG | 0.564753 | 3.4:-79597668 | None:intergenic |
| GCCCGGTGCATCTTTAAGAA+CGG | 0.565697 | 3.4:-79597570 | None:intergenic |
| TACATTGTCCAATCTCATCC+GGG | 0.571559 | 3.4:+79597294 | MS.gene79807:CDS |
| AACGAACGGTATGGGCTCGA+AGG | 0.577262 | 3.4:-79597592 | None:intergenic |
| TAATGATCGATGCACCGAAA+GGG | 0.577528 | 3.4:+79597771 | MS.gene79807:CDS |
| TGTTATGGCGAGGAATAGGA+AGG | 0.578541 | 3.4:+79597841 | MS.gene79807:CDS |
| AGAATTGCTCTTAGTTGGAT+CGG | 0.578604 | 3.4:-79597353 | None:intergenic |
| ATGAAGTTTACGATACGGAG+TGG | 0.579625 | 3.4:+79597741 | MS.gene79807:CDS |
| AAGCCCACATGAGAGAATCA+TGG | 0.587500 | 3.4:-79597490 | None:intergenic |
| AAAGTTGCATGGTCGATCGT+AGG | 0.593110 | 3.4:-79597450 | None:intergenic |
| ATAATGATCGATGCACCGAA+AGG | 0.606232 | 3.4:+79597770 | MS.gene79807:CDS |
| GGAGGCGCCAGGGAGAATGG+CGG | 0.608678 | 3.4:+79597802 | MS.gene79807:CDS |
| TGCACCGAAAGGGTATTTCG+CGG | 0.610339 | 3.4:+79597781 | MS.gene79807:CDS |
| ATGTGGGCTTCGTTTAACCC+AGG | 0.611048 | 3.4:+79597503 | MS.gene79807:CDS |
| GGAACAATGTGTTACCACCT+GGG | 0.635643 | 3.4:-79597520 | None:intergenic |
| ACCGTTCTTAAAGATGCACC+GGG | 0.648910 | 3.4:+79597569 | MS.gene79807:CDS |
| TGAAGTTTACGATACGGAGT+GGG | 0.649344 | 3.4:+79597742 | MS.gene79807:CDS |
| TGGGCTTCGTTTAACCCAGG+TGG | 0.655905 | 3.4:+79597506 | MS.gene79807:CDS |
| TAGTGACGAGGATGTACCGA+AGG | 0.657514 | 3.4:-79597273 | None:intergenic |
| TTGAGGAACAACACGTGATG+TGG | 0.657522 | 3.4:-79597384 | None:intergenic |
| CCGAAGACAAGAAAGTTGCA+TGG | 0.658301 | 3.4:-79597461 | None:intergenic |
| ACTCATCTCCTCCTACCGCA+AGG | 0.662626 | 3.4:+79597643 | MS.gene79807:CDS |
| GAGCTGTGTTCGATAACGAA+CGG | 0.677853 | 3.4:-79597606 | None:intergenic |
| ACACATAGGTTCCTTGCGGT+AGG | 0.681932 | 3.4:-79597654 | None:intergenic |
| GTTATGGCGAGGAATAGGAA+GGG | 0.693114 | 3.4:+79597842 | MS.gene79807:CDS |
| TTTCTGCTGCTGTTATGGCG+AGG | 0.694646 | 3.4:+79597831 | MS.gene79807:CDS |
| ACCGAAAGGGTATTTCGCGG+AGG | 0.696174 | 3.4:+79597784 | MS.gene79807:CDS |
| GTGAACACATAGGTTCCTTG+CGG | 0.708324 | 3.4:-79597658 | None:intergenic |
| GATTGGACAATGTAGTGACG+AGG | 0.771230 | 3.4:-79597285 | None:intergenic |
| ACCGAAGGTTGTGATCGCTG+TGG | 0.773282 | 3.4:-79597258 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCTTTGTAAGAAGAATT+TGG | + | chr3.4:79597931-79597950 | MS.gene79807:CDS | 20.0% |
| ! | TGTAAGAAGAATTTGGTTAA+AGG | + | chr3.4:79597938-79597957 | MS.gene79807:CDS | 25.0% |
| ! | TTCATAGGATTAACAACAAT+TGG | + | chr3.4:79597209-79597228 | MS.gene79807:CDS | 25.0% |
| CAACAAAGAAAGCTATTCAT+AGG | + | chr3.4:79597194-79597213 | MS.gene79807:CDS | 30.0% | |
| CTATGAATAGCTTTCTTTGT+TGG | - | chr3.4:79597196-79597215 | None:intergenic | 30.0% | |
| GTTGGAGAGGATAATAATAA+CGG | - | chr3.4:79597178-79597197 | None:intergenic | 30.0% | |
| ! | AAGAATTTGGTTAAAGGTGT+TGG | + | chr3.4:79597944-79597963 | MS.gene79807:CDS | 30.0% |
| AATAGCTTTCTTTGTTGGAG+AGG | - | chr3.4:79597191-79597210 | None:intergenic | 35.0% | |
| ACCTGATGAAGTTTACGATA+CGG | + | chr3.4:79597736-79597755 | MS.gene79807:CDS | 35.0% | |
| AGAATTGCTCTTAGTTGGAT+CGG | - | chr3.4:79597356-79597375 | None:intergenic | 35.0% | |
| AGTGAAGAATTGCTCTTAGT+TGG | - | chr3.4:79597361-79597380 | None:intergenic | 35.0% | |
| CCTTGAAGAAGATCCTAAAT+GGG | + | chr3.4:79597541-79597560 | MS.gene79807:CDS | 35.0% | |
| TCCTTGAAGAAGATCCTAAA+TGG | + | chr3.4:79597540-79597559 | MS.gene79807:CDS | 35.0% | |
| TTTACATGATGTGGATCGTA+GGG | + | chr3.4:79597886-79597905 | MS.gene79807:CDS | 35.0% | |
| TTTCAGATAGCACCGTTTAA+TGG | + | chr3.4:79597980-79597999 | MS.gene79807:CDS | 35.0% | |
| ! | TTTTACATGATGTGGATCGT+AGG | + | chr3.4:79597885-79597904 | MS.gene79807:CDS | 35.0% |
| !! | AGATGAGTTTGTTAGCTTCA+CGG | - | chr3.4:79597631-79597650 | None:intergenic | 35.0% |
| !! | ATTTGGTTAAAGGTGTTGGA+AGG | + | chr3.4:79597948-79597967 | MS.gene79807:CDS | 35.0% |
| !! | GCATGTGTTTTTACATGATG+TGG | + | chr3.4:79597877-79597896 | MS.gene79807:CDS | 35.0% |
| AACCGTTCTTAAAGATGCAC+CGG | + | chr3.4:79597568-79597587 | MS.gene79807:CDS | 40.0% | |
| AACTTTCTTGTCTTCGGACT+TGG | + | chr3.4:79597467-79597486 | MS.gene79807:CDS | 40.0% | |
| AGAACGGTTTGAACCCATTT+AGG | - | chr3.4:79597557-79597576 | None:intergenic | 40.0% | |
| ATAATGATCGATGCACCGAA+AGG | + | chr3.4:79597770-79597789 | MS.gene79807:CDS | 40.0% | |
| ATGAAGTTTACGATACGGAG+TGG | + | chr3.4:79597741-79597760 | MS.gene79807:CDS | 40.0% | |
| ATTGTTGTCGTCGTTTGATC+GGG | - | chr3.4:79597327-79597346 | None:intergenic | 40.0% | |
| CCATGCAACTTTCTTGTCTT+CGG | + | chr3.4:79597461-79597480 | MS.gene79807:CDS | 40.0% | |
| CTACATTGTCCAATCTCATC+CGG | + | chr3.4:79597293-79597312 | MS.gene79807:CDS | 40.0% | |
| GATTGTTGTCGTCGTTTGAT+CGG | - | chr3.4:79597328-79597347 | None:intergenic | 40.0% | |
| TAATGATCGATGCACCGAAA+GGG | + | chr3.4:79597771-79597790 | MS.gene79807:CDS | 40.0% | |
| TACATTGTCCAATCTCATCC+GGG | + | chr3.4:79597294-79597313 | MS.gene79807:CDS | 40.0% | |
| TCCGTATCGTAAACTTCATC+AGG | - | chr3.4:79597740-79597759 | None:intergenic | 40.0% | |
| TGAAGTTTACGATACGGAGT+GGG | + | chr3.4:79597742-79597761 | MS.gene79807:CDS | 40.0% | |
| TGTTCGATAACGAACGGTAT+GGG | - | chr3.4:79597603-79597622 | None:intergenic | 40.0% | |
| ! | ACGTGTTGTTCCTCAACAAT+CGG | + | chr3.4:79597391-79597410 | MS.gene79807:CDS | 40.0% |
| ! | CCCATTTAGGATCTTCTTCA+AGG | - | chr3.4:79597544-79597563 | None:intergenic | 40.0% |
| ! | GGAGAATCAGTGCCATTAAA+CGG | - | chr3.4:79597995-79598014 | None:intergenic | 40.0% |
| !! | CCACGTAGAAAAGCTTTAGA+AGG | - | chr3.4:79597683-79597702 | None:intergenic | 40.0% |
| !! | GCTTTAGAAGGTGAACACAT+AGG | - | chr3.4:79597671-79597690 | None:intergenic | 40.0% |
| !! | TTAAAGGTGTTGGAAGGCTT+TGG | + | chr3.4:79597954-79597973 | MS.gene79807:CDS | 40.0% |
| !!! | CCTTCTAAAGCTTTTCTACG+TGG | + | chr3.4:79597680-79597699 | MS.gene79807:CDS | 40.0% |
| AAAGTTGCATGGTCGATCGT+AGG | - | chr3.4:79597453-79597472 | None:intergenic | 45.0% | |
| AAGCCCACATGAGAGAATCA+TGG | - | chr3.4:79597493-79597512 | None:intergenic | 45.0% | |
| ACCGTTCTTAAAGATGCACC+GGG | + | chr3.4:79597569-79597588 | MS.gene79807:CDS | 45.0% | |
| AGGAACAATGTGTTACCACC+TGG | - | chr3.4:79597524-79597543 | None:intergenic | 45.0% | |
| CCGAAGACAAGAAAGTTGCA+TGG | - | chr3.4:79597464-79597483 | None:intergenic | 45.0% | |
| GAGCTGTGTTCGATAACGAA+CGG | - | chr3.4:79597609-79597628 | None:intergenic | 45.0% | |
| GATTGGACAATGTAGTGACG+AGG | - | chr3.4:79597288-79597307 | None:intergenic | 45.0% | |
| GGAACAATGTGTTACCACCT+GGG | - | chr3.4:79597523-79597542 | None:intergenic | 45.0% | |
| GTGAACACATAGGTTCCTTG+CGG | - | chr3.4:79597661-79597680 | None:intergenic | 45.0% | |
| GTGTTCGATAACGAACGGTA+TGG | - | chr3.4:79597604-79597623 | None:intergenic | 45.0% | |
| GTTATGGCGAGGAATAGGAA+GGG | + | chr3.4:79597842-79597861 | MS.gene79807:CDS | 45.0% | |
| TGGCCATGATTCTCTCATGT+GGG | + | chr3.4:79597487-79597506 | MS.gene79807:CDS | 45.0% | |
| TGTTATGGCGAGGAATAGGA+AGG | + | chr3.4:79597841-79597860 | MS.gene79807:CDS | 45.0% | |
| TTGAGGAACAACACGTGATG+TGG | - | chr3.4:79597387-79597406 | None:intergenic | 45.0% | |
| TTGGCCATGATTCTCTCATG+TGG | + | chr3.4:79597486-79597505 | MS.gene79807:CDS | 45.0% | |
| ! | GGTGTTTTCTGCTGCTGTTA+TGG | + | chr3.4:79597826-79597845 | MS.gene79807:CDS | 45.0% |
| !! | ATCTCTGAGACCGATTGTTG+AGG | - | chr3.4:79597404-79597423 | None:intergenic | 45.0% |
| ACACATAGGTTCCTTGCGGT+AGG | - | chr3.4:79597657-79597676 | None:intergenic | 50.0% | |
| ATGTGGGCTTCGTTTAACCC+AGG | + | chr3.4:79597503-79597522 | MS.gene79807:CDS | 50.0% | |
| CTGCTGTTATGGCGAGGAAT+AGG | + | chr3.4:79597837-79597856 | MS.gene79807:CDS | 50.0% | |
| GCTCTTAGTTGGATCGGTGA+TGG | - | chr3.4:79597350-79597369 | None:intergenic | 50.0% | |
| TAGTGACGAGGATGTACCGA+AGG | - | chr3.4:79597276-79597295 | None:intergenic | 50.0% | |
| TTTCTGCTGCTGTTATGGCG+AGG | + | chr3.4:79597831-79597850 | MS.gene79807:CDS | 50.0% | |
| ! | GCCCGGTGCATCTTTAAGAA+CGG | - | chr3.4:79597573-79597592 | None:intergenic | 50.0% |
| !! | TGCACCGAAAGGGTATTTCG+CGG | + | chr3.4:79597781-79597800 | MS.gene79807:CDS | 50.0% |
| AACGAACGGTATGGGCTCGA+AGG | - | chr3.4:79597595-79597614 | None:intergenic | 55.0% | |
| ACCGAAGGTTGTGATCGCTG+TGG | - | chr3.4:79597261-79597280 | None:intergenic | 55.0% | |
| ACTCATCTCCTCCTACCGCA+AGG | + | chr3.4:79597643-79597662 | MS.gene79807:CDS | 55.0% | |
| CATAGGTTCCTTGCGGTAGG+AGG | - | chr3.4:79597654-79597673 | None:intergenic | 55.0% | |
| GCCACAGCGATCACAACCTT+CGG | + | chr3.4:79597257-79597276 | MS.gene79807:CDS | 55.0% | |
| GCCTCCGCGAAATACCCTTT+CGG | - | chr3.4:79597788-79597807 | None:intergenic | 55.0% | |
| GCGAGGAATAGGAAGGGATC+TGG | + | chr3.4:79597848-79597867 | MS.gene79807:CDS | 55.0% | |
| TGGGCTTCGTTTAACCCAGG+TGG | + | chr3.4:79597506-79597525 | MS.gene79807:CDS | 55.0% | |
| TGTCGTCGTTTGATCGGGCT+CGG | - | chr3.4:79597322-79597341 | None:intergenic | 55.0% | |
| !! | ACCGAAAGGGTATTTCGCGG+AGG | + | chr3.4:79597784-79597803 | MS.gene79807:CDS | 55.0% |
| GCTCGGATCCCGGATGAGAT+TGG | - | chr3.4:79597305-79597324 | None:intergenic | 60.0% | |
| GTTTGATCGGGCTCGGATCC+CGG | - | chr3.4:79597315-79597334 | None:intergenic | 60.0% | |
| AACACCGCCGCCATTCTCCC+TGG | - | chr3.4:79597812-79597831 | None:intergenic | 65.0% | |
| ACGGTATGGGCTCGAAGGCC+CGG | - | chr3.4:79597590-79597609 | None:intergenic | 65.0% | |
| !! | GGTATTTCGCGGAGGCGCCA+GGG | + | chr3.4:79597792-79597811 | MS.gene79807:CDS | 65.0% |
| !! | GGAGGCGCCAGGGAGAATGG+CGG | + | chr3.4:79597802-79597821 | MS.gene79807:CDS | 70.0% |
| !! | GGGTATTTCGCGGAGGCGCC+AGG | + | chr3.4:79597791-79597810 | MS.gene79807:CDS | 70.0% |
| GGCGCCAGGGAGAATGGCGG+CGG | + | chr3.4:79597805-79597824 | MS.gene79807:CDS | 75.0% | |
| !! | CGCGGAGGCGCCAGGGAGAA+TGG | + | chr3.4:79597799-79597818 | MS.gene79807:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 79597167 | 79598027 | 79597167 | ID=MS.gene79807 |
| chr3.4 | mRNA | 79597167 | 79598027 | 79597167 | ID=MS.gene79807.t1;Parent=MS.gene79807 |
| chr3.4 | exon | 79597167 | 79598027 | 79597167 | ID=MS.gene79807.t1.exon1;Parent=MS.gene79807.t1 |
| chr3.4 | CDS | 79597167 | 79598027 | 79597167 | ID=cds.MS.gene79807.t1;Parent=MS.gene79807.t1 |
| Gene Sequence |
| Protein sequence |
