Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050649.t1 | XP_013450601.1 | 97.7 | 392 | 9 | 0 | 232 | 623 | 17 | 408 | 1.30E-222 | 782.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050649.t1 | Q9M363 | 51.1 | 364 | 169 | 6 | 252 | 609 | 32 | 392 | 1.2e-104 | 382.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050649.t1 | A0A072U4F8 | 97.7 | 392 | 9 | 0 | 232 | 623 | 17 | 408 | 9.0e-223 | 782.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049302 | MS.gene050649 | 0.809125 | 2.21E-50 | -1.69E-46 |
| MS.gene050649 | MS.gene058206 | 0.82443 | 8.11E-54 | -1.69E-46 |
| MS.gene050649 | MS.gene060317 | 0.837431 | 5.22E-57 | -1.69E-46 |
| MS.gene050649 | MS.gene061743 | 0.82847 | 8.83E-55 | -1.69E-46 |
| MS.gene050649 | MS.gene06426 | 0.805588 | 1.24E-49 | -1.69E-46 |
| MS.gene050649 | MS.gene066058 | 0.839837 | 1.25E-57 | -1.69E-46 |
| MS.gene050649 | MS.gene07246 | 0.807855 | 4.12E-50 | -1.69E-46 |
| MS.gene050649 | MS.gene073454 | 0.840446 | 8.65E-58 | -1.69E-46 |
| MS.gene050649 | MS.gene08679 | 0.832694 | 8.17E-56 | -1.69E-46 |
| MS.gene050649 | MS.gene08698 | 0.853796 | 1.89E-61 | -1.69E-46 |
| MS.gene050649 | MS.gene20057 | 0.876726 | 1.11E-68 | -1.69E-46 |
| MS.gene050649 | MS.gene20768 | 0.800341 | 1.51E-48 | -1.69E-46 |
| MS.gene050649 | MS.gene20937 | 0.848394 | 6.30E-60 | -1.69E-46 |
| MS.gene050649 | MS.gene21112 | 0.815861 | 7.44E-52 | -1.69E-46 |
| MS.gene050649 | MS.gene22440 | 0.886237 | 4.07E-72 | -1.69E-46 |
| MS.gene050649 | MS.gene22697 | 0.98429 | 3.92E-160 | -1.69E-46 |
| MS.gene050649 | MS.gene22779 | 0.980082 | 2.09E-149 | -1.69E-46 |
| MS.gene050649 | MS.gene30980 | 0.807015 | 6.21E-50 | -1.69E-46 |
| MS.gene050649 | MS.gene31312 | 0.813195 | 2.89E-51 | -1.69E-46 |
| MS.gene050649 | MS.gene32024 | 0.803353 | 3.63E-49 | -1.69E-46 |
| MS.gene050649 | MS.gene38580 | 0.803302 | 3.72E-49 | -1.69E-46 |
| MS.gene050649 | MS.gene44705 | 0.842757 | 2.13E-58 | -1.69E-46 |
| MS.gene050649 | MS.gene49963 | 0.832929 | 7.14E-56 | -1.69E-46 |
| MS.gene050649 | MS.gene53249 | 0.816029 | 6.83E-52 | -1.69E-46 |
| MS.gene050649 | MS.gene56810 | 0.815052 | 1.13E-51 | -1.69E-46 |
| MS.gene050649 | MS.gene58407 | 0.829605 | 4.69E-55 | -1.69E-46 |
| MS.gene050649 | MS.gene58679 | 0.843071 | 1.76E-58 | -1.69E-46 |
| MS.gene050649 | MS.gene61627 | 0.808826 | 2.56E-50 | -1.69E-46 |
| MS.gene050649 | MS.gene79807 | 0.811651 | 6.29E-51 | -1.69E-46 |
| MS.gene050649 | MS.gene90480 | 0.82709 | 1.90E-54 | -1.69E-46 |
| MS.gene050649 | MS.gene91410 | 0.828872 | 7.06E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050649.t1 | MTR_7g117375 | 97.704 | 392 | 9 | 0 | 232 | 623 | 17 | 408 | 0.0 | 801 |
| MS.gene050649.t1 | MTR_7g117380 | 95.279 | 233 | 5 | 2 | 1 | 232 | 1 | 228 | 4.15e-155 | 445 |
| MS.gene050649.t1 | MTR_7g117380 | 97.312 | 186 | 4 | 1 | 48 | 232 | 1 | 186 | 1.52e-124 | 365 |
| MS.gene050649.t1 | MTR_8g028075 | 35.312 | 337 | 206 | 6 | 259 | 589 | 220 | 550 | 2.13e-67 | 230 |
| MS.gene050649.t1 | MTR_8g028075 | 32.164 | 171 | 109 | 5 | 254 | 418 | 23 | 192 | 9.82e-17 | 84.0 |
| MS.gene050649.t1 | MTR_5g093520 | 28.354 | 328 | 203 | 9 | 292 | 594 | 67 | 387 | 1.75e-30 | 124 |
| MS.gene050649.t1 | MTR_4g133620 | 27.961 | 304 | 194 | 9 | 316 | 600 | 87 | 384 | 2.22e-30 | 124 |
| MS.gene050649.t1 | MTR_7g051910 | 30.145 | 345 | 204 | 14 | 280 | 600 | 43 | 374 | 1.47e-29 | 121 |
| MS.gene050649.t1 | MTR_8g009880 | 31.230 | 317 | 185 | 14 | 307 | 598 | 69 | 377 | 6.74e-28 | 116 |
| MS.gene050649.t1 | MTR_2g026080 | 29.470 | 302 | 183 | 10 | 319 | 599 | 94 | 386 | 1.55e-27 | 115 |
| MS.gene050649.t1 | MTR_5g097620 | 35.593 | 177 | 106 | 4 | 433 | 601 | 247 | 423 | 5.63e-26 | 111 |
| MS.gene050649.t1 | MTR_1g076800 | 34.043 | 235 | 118 | 8 | 3 | 226 | 4 | 212 | 7.38e-26 | 106 |
| MS.gene050649.t1 | MTR_4g023950 | 35.470 | 234 | 116 | 9 | 2 | 227 | 3 | 209 | 8.35e-25 | 103 |
| MS.gene050649.t1 | MTR_6g060390 | 30.568 | 229 | 135 | 6 | 3 | 226 | 4 | 213 | 4.72e-24 | 101 |
| MS.gene050649.t1 | MTR_3g058510 | 26.316 | 285 | 197 | 6 | 319 | 593 | 87 | 368 | 7.39e-24 | 104 |
| MS.gene050649.t1 | MTR_6g060440 | 30.131 | 229 | 134 | 7 | 3 | 226 | 4 | 211 | 1.31e-23 | 100 |
| MS.gene050649.t1 | MTR_8g028070 | 35.260 | 173 | 105 | 5 | 252 | 418 | 23 | 194 | 1.78e-23 | 100 |
| MS.gene050649.t1 | MTR_4g024370 | 30.870 | 230 | 149 | 6 | 3 | 225 | 5 | 231 | 2.45e-23 | 99.4 |
| MS.gene050649.t1 | MTR_4g024370 | 30.870 | 230 | 149 | 6 | 3 | 225 | 5 | 231 | 2.45e-23 | 99.4 |
| MS.gene050649.t1 | MTR_2g018960 | 24.629 | 337 | 216 | 9 | 289 | 599 | 518 | 842 | 5.15e-21 | 98.2 |
| MS.gene050649.t1 | MTR_5g011800 | 28.326 | 233 | 148 | 7 | 3 | 225 | 5 | 228 | 7.02e-18 | 83.6 |
| MS.gene050649.t1 | MTR_5g011820 | 29.060 | 234 | 145 | 7 | 3 | 225 | 8 | 231 | 9.22e-17 | 80.5 |
| MS.gene050649.t1 | MTR_4g102220 | 30.213 | 235 | 137 | 11 | 3 | 225 | 5 | 224 | 5.14e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050649.t1 | AT3G61750 | 52.770 | 343 | 155 | 5 | 252 | 590 | 32 | 371 | 5.57e-128 | 382 |
| MS.gene050649.t1 | AT3G61750 | 54.392 | 296 | 130 | 3 | 297 | 590 | 2 | 294 | 1.98e-113 | 342 |
| MS.gene050649.t1 | AT3G07570 | 35.519 | 366 | 218 | 9 | 241 | 595 | 11 | 369 | 6.02e-66 | 221 |
| MS.gene050649.t1 | AT5G47530 | 31.683 | 202 | 131 | 4 | 393 | 588 | 163 | 363 | 3.97e-30 | 123 |
| MS.gene050649.t1 | AT4G12980 | 35.556 | 180 | 109 | 3 | 431 | 603 | 212 | 391 | 8.21e-30 | 122 |
| MS.gene050649.t1 | AT3G25290 | 34.359 | 195 | 119 | 4 | 416 | 603 | 198 | 390 | 2.01e-29 | 120 |
| MS.gene050649.t1 | AT3G25290 | 34.359 | 195 | 119 | 4 | 416 | 603 | 198 | 390 | 2.01e-29 | 120 |
| MS.gene050649.t1 | AT5G35735 | 25.882 | 340 | 219 | 11 | 289 | 609 | 57 | 382 | 3.46e-26 | 111 |
| MS.gene050649.t1 | AT4G17280 | 34.783 | 161 | 98 | 3 | 434 | 590 | 213 | 370 | 1.26e-24 | 107 |
| MS.gene050649.t1 | AT3G59070 | 30.667 | 225 | 140 | 5 | 402 | 612 | 183 | 405 | 2.57e-24 | 107 |
| MS.gene050649.t1 | AT2G04850 | 26.398 | 322 | 197 | 12 | 307 | 598 | 71 | 382 | 3.32e-20 | 94.0 |
| MS.gene050649.t1 | AT3G60780 | 30.435 | 230 | 136 | 10 | 3 | 225 | 5 | 217 | 1.93e-19 | 87.8 |
| MS.gene050649.t1 | AT2G45360 | 30.435 | 230 | 133 | 8 | 3 | 225 | 5 | 214 | 7.23e-19 | 86.3 |
| MS.gene050649.t1 | AT5G62280 | 31.489 | 235 | 137 | 9 | 3 | 226 | 4 | 225 | 8.43e-18 | 83.6 |
| MS.gene050649.t1 | AT1G12320 | 28.261 | 230 | 137 | 8 | 3 | 226 | 5 | 212 | 2.29e-14 | 73.2 |
| MS.gene050649.t1 | AT5G54830 | 23.795 | 332 | 215 | 11 | 289 | 594 | 530 | 849 | 1.12e-12 | 71.6 |
| MS.gene050649.t1 | AT1G62840 | 25.862 | 232 | 150 | 5 | 3 | 225 | 5 | 223 | 2.69e-12 | 67.0 |
Find 143 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGGGGCTGAAATTTATT+TGG | 0.168870 | 7.3:+944724 | MS.gene050649:CDS |
| AGAGGATCCATTTGGAAATT+TGG | 0.184762 | 7.3:-946335 | None:intergenic |
| GTACTAAAAGCCAATAAAAT+TGG | 0.228379 | 7.3:-944785 | None:intergenic |
| CGAAACTTGGAATCCCTATT+TGG | 0.245262 | 7.3:-946107 | None:intergenic |
| AGAAAGAATCATGGAATAAT+TGG | 0.246187 | 7.3:+945596 | MS.gene050649:CDS |
| AGTTATCGTTCTCGAAATAT+TGG | 0.252993 | 7.3:+946277 | MS.gene050649:CDS |
| TGCAGCCTTGAACATAGTTT+TGG | 0.253562 | 7.3:+946181 | MS.gene050649:CDS |
| CATTCTTCTTGAGACCAAAT+AGG | 0.267115 | 7.3:+946093 | MS.gene050649:CDS |
| GGACTTGCTACTGTCCTTCT+TGG | 0.268455 | 7.3:+945737 | MS.gene050649:CDS |
| CATGGAATAATTGGTATTAT+AGG | 0.273911 | 7.3:+945605 | MS.gene050649:CDS |
| CATTCAATCATTCAATTTGT+TGG | 0.280269 | 7.3:+945704 | MS.gene050649:CDS |
| TGCCAAACGGGTTTGCATAT+TGG | 0.291944 | 7.3:-943746 | None:intergenic |
| CCTGCTGCTGTGGCAACAAA+TGG | 0.314910 | 7.3:+944707 | MS.gene050649:CDS |
| CCTTGTGCTAAGTATTCTTC+AGG | 0.315018 | 7.3:+945823 | MS.gene050649:CDS |
| GAAAAGGGTTGGAAGGAATA+AGG | 0.317419 | 7.3:+942675 | MS.gene050649:CDS |
| CAATTTGTTGGATTTGCATT+TGG | 0.319893 | 7.3:+945716 | MS.gene050649:CDS |
| AGAGACATCATGCAAGAAAA+AGG | 0.326563 | 7.3:+942795 | MS.gene050649:CDS |
| CCCTACACAGTTGGGTGGGT+GGG | 0.331717 | 7.3:+944527 | MS.gene050649:CDS |
| CTTCAAACAACAATTCCATT+TGG | 0.339138 | 7.3:+944755 | MS.gene050649:CDS |
| GCCGCTGCTGCGCGACAAAC+CGG | 0.339873 | 7.3:+942407 | MS.gene050649:CDS |
| CTGCTGCTGTGGCAACAAAT+GGG | 0.354136 | 7.3:+944708 | MS.gene050649:CDS |
| CCACAGTTGGTTTGGAAGAA+TGG | 0.354486 | 7.3:+946148 | MS.gene050649:CDS |
| ATGGAATAATTGGTATTATA+GGG | 0.356476 | 7.3:+945606 | MS.gene050649:CDS |
| ACAGTTGGGTGGGTGGGGAT+TGG | 0.365724 | 7.3:+944533 | MS.gene050649:CDS |
| AACTTCAATACCATTGCATT+AGG | 0.373456 | 7.3:+943638 | MS.gene050649:CDS |
| CTGGTATGTGGACATGCATT+TGG | 0.374194 | 7.3:-945775 | None:intergenic |
| ATTCTTCTTGAGACCAAATA+GGG | 0.382671 | 7.3:+946094 | MS.gene050649:CDS |
| CTTCTCCAAGAGGATCCATT+TGG | 0.387230 | 7.3:-946343 | None:intergenic |
| GCAGCAGGCACGTTATTTAG+AGG | 0.399879 | 7.3:-944692 | None:intergenic |
| CATTCCCAAAACTATGTTCA+AGG | 0.410754 | 7.3:-946186 | None:intergenic |
| ATACCAGCTCACAGAGGAAT+TGG | 0.414517 | 7.3:+945791 | MS.gene050649:CDS |
| AAAATTGGTTGCTTTCCAAA+TGG | 0.417606 | 7.3:-944770 | None:intergenic |
| CCTACACAGTTGGGTGGGTG+GGG | 0.424223 | 7.3:+944528 | MS.gene050649:CDS |
| AGTGTAATAATGTTGATAAA+AGG | 0.425505 | 7.3:+942255 | MS.gene050649:intron |
| AATTCATATGTATGCCAAAC+GGG | 0.434998 | 7.3:-943758 | None:intergenic |
| TGATAAATGTTAATCCTGTC+AGG | 0.435301 | 7.3:+942618 | MS.gene050649:CDS |
| ACTTGGTTGGTGATAGAAAA+GGG | 0.435872 | 7.3:+942660 | MS.gene050649:CDS |
| ACAAGCTATGGATTCCTTGT+TGG | 0.442212 | 7.3:+946239 | MS.gene050649:CDS |
| CTCCAATATGCAAACCCGTT+TGG | 0.444241 | 7.3:+943744 | MS.gene050649:CDS |
| CCATTTGTTGCCACAGCAGC+AGG | 0.445115 | 7.3:-944707 | None:intergenic |
| TATTCTTCCTGAGCCAGTCC+TGG | 0.445514 | 7.3:+942445 | MS.gene050649:CDS |
| AATTTGTACCACAGTTGGTT+TGG | 0.448506 | 7.3:+946140 | MS.gene050649:CDS |
| CCAAGAAATATTCAAACAAA+AGG | 0.450332 | 7.3:+946374 | MS.gene050649:CDS |
| ATCAAGCAGTATTATCTAAG+AGG | 0.452095 | 7.3:+944629 | MS.gene050649:CDS |
| CCTTCCACCAAATTTCCAAA+TGG | 0.454867 | 7.3:+946328 | MS.gene050649:CDS |
| AATGAAAGCAAAACTTATAG+TGG | 0.458127 | 7.3:+942343 | MS.gene050649:CDS |
| TGCGAGGTACTTCAAACATA+AGG | 0.459343 | 7.3:+945661 | MS.gene050649:CDS |
| AAATATTGGCATATTTAAAA+CGG | 0.460423 | 7.3:+946291 | MS.gene050649:CDS |
| GACTCATCCAGGACTGGCTC+AGG | 0.461578 | 7.3:-942452 | None:intergenic |
| TCCGGTTTGTCGCGCAGCAG+CGG | 0.461922 | 7.3:-942408 | None:intergenic |
| TTTGTCGCGCAGCAGCGGCA+AGG | 0.464446 | 7.3:-942403 | None:intergenic |
| TGGTATGTGGACATGCATTT+GGG | 0.466439 | 7.3:-945774 | None:intergenic |
| AACTTGGTTGGTGATAGAAA+AGG | 0.471774 | 7.3:+942659 | MS.gene050649:CDS |
| AGATCTGTGAAACATTCTAT+AGG | 0.471937 | 7.3:+942722 | MS.gene050649:CDS |
| CAGCAGGAGCAACGAATGCT+TGG | 0.473840 | 7.3:+946213 | MS.gene050649:CDS |
| TCTCATTTGAATCAAACCAT+TGG | 0.474801 | 7.3:-945576 | None:intergenic |
| CCATTTGGAAATTTGGTGGA+AGG | 0.482086 | 7.3:-946328 | None:intergenic |
| TGAATCAAACCATTGGATGC+TGG | 0.484210 | 7.3:-945569 | None:intergenic |
| ATTCAAATGAGAAAGAATCA+TGG | 0.487178 | 7.3:+945587 | MS.gene050649:CDS |
| TTGTCGCGCAGCAGCGGCAA+GGG | 0.487207 | 7.3:-942402 | None:intergenic |
| AATTTCCAAATGGATCCTCT+TGG | 0.487835 | 7.3:+946338 | MS.gene050649:CDS |
| GGAGATGATATATTCTGATA+AGG | 0.491112 | 7.3:-943725 | None:intergenic |
| AGTTTGAGAGTACAAGAGTT+GGG | 0.493492 | 7.3:+942287 | MS.gene050649:CDS |
| TCAAACATAAGGAACCCCTT+TGG | 0.493885 | 7.3:+945672 | MS.gene050649:CDS |
| TGTCATCATGCTTTGACAGA+TGG | 0.495892 | 7.3:-944826 | None:intergenic |
| ACCCTACACAGTTGGGTGGG+TGG | 0.496193 | 7.3:+944526 | MS.gene050649:CDS |
| ACCACTCTTCTCATCAAACT+TGG | 0.497880 | 7.3:-942837 | None:intergenic |
| TGTTGTTGTTGCAAATAACT+TGG | 0.502261 | 7.3:+942643 | MS.gene050649:CDS |
| TTGGCATACATATGAATTGA+GGG | 0.509114 | 7.3:+943763 | MS.gene050649:CDS |
| CATTTGGAAATTTGGTGGAA+GGG | 0.509644 | 7.3:-946327 | None:intergenic |
| GGATCCATTTGGAAATTTGG+TGG | 0.510637 | 7.3:-946332 | None:intergenic |
| CCCACCCACCCAACTGTGTA+GGG | 0.511172 | 7.3:-944527 | None:intergenic |
| TGTGGAATTTGTACCACAGT+TGG | 0.515734 | 7.3:+946135 | MS.gene050649:CDS |
| TGCTGCTGTGGCAACAAATG+GGG | 0.517059 | 7.3:+944709 | MS.gene050649:CDS |
| TTTGTATCAGCATTAGCAGC+AGG | 0.517996 | 7.3:+942320 | MS.gene050649:CDS |
| AATACACACAACTTTGCCTC+CGG | 0.520511 | 7.3:-942426 | None:intergenic |
| CTCGCAACAATTGCACCTAC+TGG | 0.521608 | 7.3:-945644 | None:intergenic |
| GGTCTGCAACATGTGCTACA+AGG | 0.526858 | 7.3:+941598 | MS.gene050649:CDS |
| TAGCGCTGCAATAACTTCGA+TGG | 0.530371 | 7.3:-942533 | None:intergenic |
| GATATATTCTGATAAGGTGG+AGG | 0.531218 | 7.3:-943719 | None:intergenic |
| CAATTCATATGTATGCCAAA+CGG | 0.533146 | 7.3:-943759 | None:intergenic |
| TATCTGCACCCTACACAGTT+GGG | 0.533408 | 7.3:+944519 | MS.gene050649:CDS |
| ATTCCAAGTTTCGCAAAATG+TGG | 0.534133 | 7.3:+946117 | MS.gene050649:CDS |
| ATAATTGGTATTATAGGGTG+GGG | 0.536263 | 7.3:+945611 | MS.gene050649:CDS |
| GATGATATATTCTGATAAGG+TGG | 0.538968 | 7.3:-943722 | None:intergenic |
| TTCCTCTGTGAGCTGGTATG+TGG | 0.543323 | 7.3:-945787 | None:intergenic |
| CTGCACCCTACACAGTTGGG+TGG | 0.544650 | 7.3:+944522 | MS.gene050649:CDS |
| ATGCCAATTCCTCTGTGAGC+TGG | 0.546668 | 7.3:-945794 | None:intergenic |
| ACATTCTATAGGCAAAGGTA+TGG | 0.546743 | 7.3:+942733 | MS.gene050649:CDS |
| GGTTGGTGATAGAAAAGGGT+TGG | 0.547940 | 7.3:+942664 | MS.gene050649:CDS |
| AATAATTGGTATTATAGGGT+GGG | 0.550790 | 7.3:+945610 | MS.gene050649:CDS |
| AATGCTTGGAAGACAAGCTA+TGG | 0.552134 | 7.3:+946227 | MS.gene050649:CDS |
| TTATCTGCACCCTACACAGT+TGG | 0.554095 | 7.3:+944518 | MS.gene050649:CDS |
| GAATAATTGGTATTATAGGG+TGG | 0.554975 | 7.3:+945609 | MS.gene050649:CDS |
| CATATTCAGATTATCTCAGA+TGG | 0.555400 | 7.3:+942868 | MS.gene050649:CDS |
| GTTGTTGCAAATAACTTGGT+TGG | 0.557832 | 7.3:+942647 | MS.gene050649:CDS |
| TTACCTTGATACCCTTCGAC+TGG | 0.559591 | 7.3:+941623 | MS.gene050649:CDS |
| TTTGGCATACATATGAATTG+AGG | 0.559705 | 7.3:+943762 | MS.gene050649:CDS |
| ATACCAGTCGAAGGGTATCA+AGG | 0.561005 | 7.3:-941626 | None:intergenic |
| GCAACAACAACAGACCTGAC+AGG | 0.562189 | 7.3:-942632 | None:intergenic |
| ATGGTGTTCATGTGGATGCT+TGG | 0.562567 | 7.3:-944807 | None:intergenic |
| GTGAAACATTCTATAGGCAA+AGG | 0.565045 | 7.3:+942728 | MS.gene050649:CDS |
| TTGAATGTAGATAGAACCAA+AGG | 0.567909 | 7.3:-945688 | None:intergenic |
| CAGTTTGAGAGTACAAGAGT+TGG | 0.569029 | 7.3:+942286 | MS.gene050649:CDS |
| GTTCAAGTGCAATGGTGGGA+TGG | 0.570789 | 7.3:+944582 | MS.gene050649:CDS |
| AAATAACGTGCCTGCTGCTG+TGG | 0.575038 | 7.3:+944697 | MS.gene050649:CDS |
| GCTATCGTTGATGAAGATGC+AGG | 0.583980 | 7.3:-942380 | None:intergenic |
| TTCATCTTTGCAATCAACAA+GGG | 0.586525 | 7.3:-942573 | None:intergenic |
| GGTTGGTTCAAGTGCAATGG+TGG | 0.590706 | 7.3:+944577 | MS.gene050649:CDS |
| GGTGATAGAAAAGGGTTGGA+AGG | 0.591112 | 7.3:+942668 | MS.gene050649:CDS |
| TGCACCCTACACAGTTGGGT+GGG | 0.592706 | 7.3:+944523 | MS.gene050649:CDS |
| TTTCATCTTTGCAATCAACA+AGG | 0.597548 | 7.3:-942574 | None:intergenic |
| GTCTGCAACATGTGCTACAA+GGG | 0.598141 | 7.3:+941599 | MS.gene050649:CDS |
| GCTGCTGCGCGACAAACCGG+AGG | 0.599771 | 7.3:+942410 | MS.gene050649:CDS |
| TGAATGTAGATAGAACCAAA+GGG | 0.600269 | 7.3:-945687 | None:intergenic |
| AGTAGAGTTGTAATCCAAGA+AGG | 0.601579 | 7.3:-945751 | None:intergenic |
| GGAAAGATTTCTTCTCCAAG+AGG | 0.601984 | 7.3:-946353 | None:intergenic |
| TCTATGGATCCAGCATCCAA+TGG | 0.602260 | 7.3:+945560 | MS.gene050649:CDS |
| CCCCACCCACCCAACTGTGT+AGG | 0.602301 | 7.3:-944528 | None:intergenic |
| ATATATTCTGATAAGGTGGA+GGG | 0.605129 | 7.3:-943718 | None:intergenic |
| CCTGAAGAATACTTAGCACA+AGG | 0.616760 | 7.3:-945823 | None:intergenic |
| TCAGAAGTCATTGCAAACAA+AGG | 0.618190 | 7.3:+944662 | MS.gene050649:CDS |
| CAACAATTGCACCTACTGGT+AGG | 0.621409 | 7.3:-945640 | None:intergenic |
| AATGTTGATAAAAGGCGAAG+TGG | 0.625945 | 7.3:+942263 | MS.gene050649:CDS |
| ATTATGTACATACCAGTCGA+AGG | 0.630660 | 7.3:-941635 | None:intergenic |
| TATTCTGATAAGGTGGAGGG+AGG | 0.635106 | 7.3:-943715 | None:intergenic |
| AGGAGATGACACAACATCGT+CGG | 0.644400 | 7.3:+943658 | MS.gene050649:CDS |
| TGCAGATAATATGATTGTTG+TGG | 0.646735 | 7.3:-944504 | None:intergenic |
| CATCGTCGGAAAGTACATGC+AGG | 0.648599 | 7.3:+943672 | MS.gene050649:CDS |
| TTATGTACATACCAGTCGAA+GGG | 0.650598 | 7.3:-941634 | None:intergenic |
| CCATTCTTCCAAACCAACTG+TGG | 0.660006 | 7.3:-946148 | None:intergenic |
| AATGGTTGGTTCAAGTGCAA+TGG | 0.660637 | 7.3:+944574 | MS.gene050649:CDS |
| TGGGGATTAATCCTACCAGT+AGG | 0.662402 | 7.3:+945629 | MS.gene050649:CDS |
| TGTGTCATCTCCTAATGCAA+TGG | 0.677178 | 7.3:-943648 | None:intergenic |
| CAGTAGGTGCAATTGTTGCG+AGG | 0.680721 | 7.3:+945645 | MS.gene050649:CDS |
| TTTGACAGATGGTGTTCATG+TGG | 0.686431 | 7.3:-944815 | None:intergenic |
| GTTTGATGAGAAGAGTGGTG+AGG | 0.690912 | 7.3:+942841 | MS.gene050649:CDS |
| GCCAAGTTTGATGAGAAGAG+TGG | 0.691125 | 7.3:+942836 | MS.gene050649:CDS |
| GTTGGTTCAAGTGCAATGGT+GGG | 0.692220 | 7.3:+944578 | MS.gene050649:CDS |
| GAATGTAGATAGAACCAAAG+GGG | 0.711232 | 7.3:-945686 | None:intergenic |
| GTGGGATGGATTAATAAACG+TGG | 0.733010 | 7.3:+944596 | MS.gene050649:CDS |
| TAACAATTATAATACCAACA+AGG | 0.736320 | 7.3:-946253 | None:intergenic |
| GTCCACATACCAGCTCACAG+AGG | 0.789985 | 7.3:+945785 | MS.gene050649:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATAAATCTTTAATTTC+TGG | - | chr7.3:944437-944456 | None:intergenic | 10.0% |
| !!! | TCAATTTTAAATCAAAATAA+TGG | - | chr7.3:945485-945504 | None:intergenic | 10.0% |
| !!! | TTTGATTCAAATTTAAAATT+CGG | - | chr7.3:943027-943046 | None:intergenic | 10.0% |
| !! | AAAGAATAATATCATTTCAA+TGG | + | chr7.3:945106-945125 | MS.gene050649:intron | 15.0% |
| !! | AAATATTGGCATATTTAAAA+CGG | + | chr7.3:946291-946310 | MS.gene050649:CDS | 15.0% |
| !! | AATTAAAGTTAGCAATAATT+TGG | - | chr7.3:944946-944965 | None:intergenic | 15.0% |
| !! | ATTCTTTGTTAATGTTAAAA+GGG | - | chr7.3:945093-945112 | None:intergenic | 15.0% |
| !! | CTAAATTCAATAATTTGATT+AGG | - | chr7.3:943003-943022 | None:intergenic | 15.0% |
| !! | TATTCTTTGTTAATGTTAAA+AGG | - | chr7.3:945094-945113 | None:intergenic | 15.0% |
| !! | TTAATCCCTAATAATAAAAA+GGG | - | chr7.3:942022-942041 | None:intergenic | 15.0% |
| !! | TTTAATCCCTAATAATAAAA+AGG | - | chr7.3:942023-942042 | None:intergenic | 15.0% |
| !!! | AAAAACGAAAGTAAATTTTT+TGG | + | chr7.3:941988-942007 | MS.gene050649:intron | 15.0% |
| !!! | ATCTAAAACTTAAATCAATT+AGG | - | chr7.3:943066-943085 | None:intergenic | 15.0% |
| !!! | ATTATATTTGATTTTTCTTC+AGG | + | chr7.3:944857-944876 | MS.gene050649:CDS | 15.0% |
| !!! | TAAAATTAGCTATATTTTGA+GGG | + | chr7.3:942045-942064 | MS.gene050649:intron | 15.0% |
| !!! | TATTAGATTTTTTTGAAGAT+AGG | + | chr7.3:945509-945528 | MS.gene050649:intron | 15.0% |
| !!! | TCTTTTATAACTTTGTTATT+AGG | + | chr7.3:944091-944110 | MS.gene050649:intron | 15.0% |
| !!! | TTAAAATTAGCTATATTTTG+AGG | + | chr7.3:942044-942063 | MS.gene050649:intron | 15.0% |
| !! | ACAAAACAACTTAAAAAACA+AGG | - | chr7.3:946410-946429 | None:intergenic | 20.0% |
| !! | ATCAAACATAATAAGTGAAA+TGG | - | chr7.3:943855-943874 | None:intergenic | 20.0% |
| !! | ATCAATGATAGATATTACTT+TGG | - | chr7.3:943966-943985 | None:intergenic | 20.0% |
| !! | ATCACAAAAATTAAGAAAGT+TGG | + | chr7.3:945180-945199 | MS.gene050649:intron | 20.0% |
| !! | ATGGAATAATTGGTATTATA+GGG | + | chr7.3:945606-945625 | MS.gene050649:CDS | 20.0% |
| !! | TAACAATTATAATACCAACA+AGG | - | chr7.3:946256-946275 | None:intergenic | 20.0% |
| !! | TCGCAAAAGTTATTTAAATT+TGG | + | chr7.3:946000-946019 | MS.gene050649:intron | 20.0% |
| !! | TGCAAACATAAACTAATTAT+CGG | - | chr7.3:945252-945271 | None:intergenic | 20.0% |
| !! | TTCTTTGTTAATGTTAAAAG+GGG | - | chr7.3:945092-945111 | None:intergenic | 20.0% |
| !!! | AGTGTAATAATGTTGATAAA+AGG | + | chr7.3:942255-942274 | MS.gene050649:intron | 20.0% |
| !!! | ATATAGCCAATTTTGATTTT+AGG | + | chr7.3:941935-941954 | MS.gene050649:intron | 20.0% |
| !!! | TATAGCCAATTTTGATTTTA+GGG | + | chr7.3:941936-941955 | MS.gene050649:intron | 20.0% |
| ! | AAAAAAGTTACACCAAAACT+TGG | - | chr7.3:942975-942994 | None:intergenic | 25.0% |
| ! | AATAATTGGTATTATAGGGT+GGG | + | chr7.3:945610-945629 | MS.gene050649:CDS | 25.0% |
| ! | AATGAAAGCAAAACTTATAG+TGG | + | chr7.3:942343-942362 | MS.gene050649:CDS | 25.0% |
| ! | AGAAAGAATCATGGAATAAT+TGG | + | chr7.3:945596-945615 | MS.gene050649:CDS | 25.0% |
| ! | ATAGATATTACTTTGGACTT+TGG | - | chr7.3:943959-943978 | None:intergenic | 25.0% |
| ! | CAAACATAAACTAATTATCG+GGG | - | chr7.3:945250-945269 | None:intergenic | 25.0% |
| ! | CAATCAGATCAAAATAATGT+TGG | + | chr7.3:944306-944325 | MS.gene050649:intron | 25.0% |
| ! | CATGGAATAATTGGTATTAT+AGG | + | chr7.3:945605-945624 | MS.gene050649:CDS | 25.0% |
| ! | CATTCAATCATTCAATTTGT+TGG | + | chr7.3:945704-945723 | MS.gene050649:CDS | 25.0% |
| ! | CCAAGAAATATTCAAACAAA+AGG | + | chr7.3:946374-946393 | MS.gene050649:CDS | 25.0% |
| ! | CTATCAATCAACATGAAATA+TGG | + | chr7.3:943115-943134 | MS.gene050649:intron | 25.0% |
| ! | GATTAATTTCAACTGAATCT+TGG | + | chr7.3:945393-945412 | MS.gene050649:intron | 25.0% |
| ! | GCAAACATAAACTAATTATC+GGG | - | chr7.3:945251-945270 | None:intergenic | 25.0% |
| ! | GTACTAAAAGCCAATAAAAT+TGG | - | chr7.3:944788-944807 | None:intergenic | 25.0% |
| ! | TATGATAGTTGAAGATATGT+GGG | + | chr7.3:942166-942185 | MS.gene050649:intron | 25.0% |
| ! | TCATTCCTGATATATTGTTA+GGG | - | chr7.3:942088-942107 | None:intergenic | 25.0% |
| ! | TGATGTGATGAATAAATGAA+TGG | + | chr7.3:943982-944001 | MS.gene050649:intron | 25.0% |
| ! | TGTATCCCTAAAATCAAAAT+TGG | - | chr7.3:941944-941963 | None:intergenic | 25.0% |
| ! | TTAAGCAAAATACTAATCTC+CGG | + | chr7.3:944170-944189 | MS.gene050649:intron | 25.0% |
| ! | TTATTGCAGTACACAAAAAA+TGG | + | chr7.3:944476-944495 | MS.gene050649:intron | 25.0% |
| ! | TTCATTCCTGATATATTGTT+AGG | - | chr7.3:942089-942108 | None:intergenic | 25.0% |
| ! | TTTAACCCTAACAATATATC+AGG | + | chr7.3:942080-942099 | MS.gene050649:intron | 25.0% |
| ! | TTTCAACGAACTTATGAATT+AGG | - | chr7.3:944026-944045 | None:intergenic | 25.0% |
| !! | GACATCCCTTTTTATTATTA+GGG | + | chr7.3:942014-942033 | MS.gene050649:intron | 25.0% |
| !! | GCTTTAAGTTATAAAACTCA+TGG | - | chr7.3:944126-944145 | None:intergenic | 25.0% |
| !! | TTCGTTGAAATAACAACTTT+TGG | + | chr7.3:944036-944055 | MS.gene050649:intron | 25.0% |
| !! | TTGAAAGGAGTCTTATATAA+AGG | + | chr7.3:945349-945368 | MS.gene050649:intron | 25.0% |
| !!! | AACGTTTGAATAGTTTTGAT+TGG | + | chr7.3:943274-943293 | MS.gene050649:intron | 25.0% |
| !!! | AATACAATCTTGATAATGCA+GGG | + | chr7.3:946447-946466 | MS.gene050649:intron | 25.0% |
| !!! | ACGAAAGTAAATTTTTTGGT+AGG | + | chr7.3:941992-942011 | MS.gene050649:intron | 25.0% |
| !!! | ATTTTCTAGAGATGGAAAAA+TGG | + | chr7.3:944556-944575 | MS.gene050649:CDS | 25.0% |
| !!! | CAACATTATTTTGATCTGAT+TGG | - | chr7.3:944308-944327 | None:intergenic | 25.0% |
| !!! | CCTTTTGTTTGAATATTTCT+TGG | - | chr7.3:946377-946396 | None:intergenic | 25.0% |
| !!! | CTTCAGTTTTAAATTCTACT+TGG | - | chr7.3:942511-942530 | None:intergenic | 25.0% |
| !!! | TAATACAATCTTGATAATGC+AGG | + | chr7.3:946446-946465 | MS.gene050649:intron | 25.0% |
| !!! | TATTTTGATCTGATTGGAAT+TGG | - | chr7.3:944302-944321 | None:intergenic | 25.0% |
| !!! | TGTTTGATTGTTGTTTAGAA+TGG | + | chr7.3:943867-943886 | MS.gene050649:intron | 25.0% |
| AAAAAAGCAATCAACAACTC+AGG | + | chr7.3:942476-942495 | MS.gene050649:CDS | 30.0% | |
| AAAAAGCAATCAACAACTCA+GGG | + | chr7.3:942477-942496 | MS.gene050649:CDS | 30.0% | |
| AAATGGGGCTGAAATTTATT+TGG | + | chr7.3:944724-944743 | MS.gene050649:CDS | 30.0% | |
| AACAGATCTAAAAGAACACA+TGG | - | chr7.3:941712-941731 | None:intergenic | 30.0% | |
| AACCATGTATGTTCAGATAT+TGG | + | chr7.3:946070-946089 | MS.gene050649:intron | 30.0% | |
| AACTTCAATACCATTGCATT+AGG | + | chr7.3:943638-943657 | MS.gene050649:CDS | 30.0% | |
| AATCTATACCCAGATACAAA+GGG | + | chr7.3:942942-942961 | MS.gene050649:intron | 30.0% | |
| AATCTCATTTAAGCGTTAAC+TGG | - | chr7.3:945926-945945 | None:intergenic | 30.0% | |
| AATTCATATGTATGCCAAAC+GGG | - | chr7.3:943761-943780 | None:intergenic | 30.0% | |
| ACAAAACTCAAGAATAAGAG+AGG | - | chr7.3:943500-943519 | None:intergenic | 30.0% | |
| ACGATCATACTAGTAAATTG+TGG | - | chr7.3:945133-945152 | None:intergenic | 30.0% | |
| AGATCTGTGAAACATTCTAT+AGG | + | chr7.3:942722-942741 | MS.gene050649:CDS | 30.0% | |
| AGTTATCGTTCTCGAAATAT+TGG | + | chr7.3:946277-946296 | MS.gene050649:CDS | 30.0% | |
| ATAATTGGTATTATAGGGTG+GGG | + | chr7.3:945611-945630 | MS.gene050649:CDS | 30.0% | |
| ATATATTCTGATAAGGTGGA+GGG | - | chr7.3:943721-943740 | None:intergenic | 30.0% | |
| ATCAAGCAGTATTATCTAAG+AGG | + | chr7.3:944629-944648 | MS.gene050649:CDS | 30.0% | |
| ATGCATATCCTAACAAAAGA+TGG | - | chr7.3:943602-943621 | None:intergenic | 30.0% | |
| ATTCTTCTTGAGACCAAATA+GGG | + | chr7.3:946094-946113 | MS.gene050649:CDS | 30.0% | |
| CAATTCATATGTATGCCAAA+CGG | - | chr7.3:943762-943781 | None:intergenic | 30.0% | |
| CATATTCAGATTATCTCAGA+TGG | + | chr7.3:942868-942887 | MS.gene050649:CDS | 30.0% | |
| CTTATTTACTGCAAATACAC+GGG | + | chr7.3:941887-941906 | MS.gene050649:intron | 30.0% | |
| CTTCAAACAACAATTCCATT+TGG | + | chr7.3:944755-944774 | MS.gene050649:CDS | 30.0% | |
| GAATAATTGGTATTATAGGG+TGG | + | chr7.3:945609-945628 | MS.gene050649:CDS | 30.0% | |
| GAATTCTAATTCCTCATTGT+TGG | + | chr7.3:943804-943823 | MS.gene050649:intron | 30.0% | |
| GATGATATATTCTGATAAGG+TGG | - | chr7.3:943725-943744 | None:intergenic | 30.0% | |
| GCTTATTTACTGCAAATACA+CGG | + | chr7.3:941886-941905 | MS.gene050649:intron | 30.0% | |
| GGAGATGATATATTCTGATA+AGG | - | chr7.3:943728-943747 | None:intergenic | 30.0% | |
| GTATATATCCCTTTGTATCT+GGG | - | chr7.3:942953-942972 | None:intergenic | 30.0% | |
| GTATGATAGTTGAAGATATG+TGG | + | chr7.3:942165-942184 | MS.gene050649:intron | 30.0% | |
| TAATGCAGCTGAAATTTGAA+AGG | + | chr7.3:945334-945353 | MS.gene050649:intron | 30.0% | |
| TGAATGGAAAAAATGTGGTT+GGG | - | chr7.3:944241-944260 | None:intergenic | 30.0% | |
| TGAATGTAGATAGAACCAAA+GGG | - | chr7.3:945690-945709 | None:intergenic | 30.0% | |
| TGATAAATGTTAATCCTGTC+AGG | + | chr7.3:942618-942637 | MS.gene050649:CDS | 30.0% | |
| TGCAGATAATATGATTGTTG+TGG | - | chr7.3:944507-944526 | None:intergenic | 30.0% | |
| TTCATCTTTGCAATCAACAA+GGG | - | chr7.3:942576-942595 | None:intergenic | 30.0% | |
| TTGAATGTAGATAGAACCAA+AGG | - | chr7.3:945691-945710 | None:intergenic | 30.0% | |
| TTGGCATACATATGAATTGA+GGG | + | chr7.3:943763-943782 | MS.gene050649:CDS | 30.0% | |
| TTTCATCTTTGCAATCAACA+AGG | - | chr7.3:942577-942596 | None:intergenic | 30.0% | |
| TTTCCATAAACTCTCTCAAA+CGG | - | chr7.3:941835-941854 | None:intergenic | 30.0% | |
| TTTGGCATACATATGAATTG+AGG | + | chr7.3:943762-943781 | MS.gene050649:CDS | 30.0% | |
| ! | AAAATTGGTTGCTTTCCAAA+TGG | - | chr7.3:944773-944792 | None:intergenic | 30.0% |
| ! | AAGGGATATATACCAAGTTT+TGG | + | chr7.3:942960-942979 | MS.gene050649:intron | 30.0% |
| ! | CTAAATACTGTTACTTCAGT+GGG | + | chr7.3:942919-942938 | MS.gene050649:intron | 30.0% |
| ! | GGACATCCCTTTTTATTATT+AGG | + | chr7.3:942013-942032 | MS.gene050649:intron | 30.0% |
| ! | TCAACGAGATCTTATGTTTT+GGG | - | chr7.3:945156-945175 | None:intergenic | 30.0% |
| ! | TCTAAATACTGTTACTTCAG+TGG | + | chr7.3:942918-942937 | MS.gene050649:intron | 30.0% |
| ! | TGGAAAGCAACCAATTTTAT+TGG | + | chr7.3:944775-944794 | MS.gene050649:CDS | 30.0% |
| ! | TGTTGTTGTTGCAAATAACT+TGG | + | chr7.3:942643-942662 | MS.gene050649:CDS | 30.0% |
| ! | TTGAAAATTATCCCTTTTGC+AGG | + | chr7.3:945536-945555 | MS.gene050649:intron | 30.0% |
| !! | AAGAACACATGGTTGATAAT+TGG | - | chr7.3:941701-941720 | None:intergenic | 30.0% |
| !! | ATTTCAAGTTTGGAATTTGG+TGG | - | chr7.3:943422-943441 | None:intergenic | 30.0% |
| !! | CAATTTGTTGGATTTGCATT+TGG | + | chr7.3:945716-945735 | MS.gene050649:CDS | 30.0% |
| !! | TGCATTTCAAGTTTGGAATT+TGG | - | chr7.3:943425-943444 | None:intergenic | 30.0% |
| !!! | CTTTCGTTTTTTATCGCTAA+TGG | - | chr7.3:941979-941998 | None:intergenic | 30.0% |
| !!! | TGAGTTGTTGATTGCTTTTT+TGG | - | chr7.3:942477-942496 | None:intergenic | 30.0% |
| !!! | TTAGAATGGACTCGTTTTTT+TGG | + | chr7.3:943881-943900 | MS.gene050649:intron | 30.0% |
| !!! | TTCTGGCTAGATTTTAGAAT+TGG | - | chr7.3:944420-944439 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTCCTTCGCCT+CGG | + | chr7.3:945028-945047 | MS.gene050649:intron | 30.0% |
| AAAAAGGAACAAGAGCAAGT+GGG | + | chr7.3:942811-942830 | MS.gene050649:CDS | 35.0% | |
| AATGGCAAAGCTAAGATCTT+TGG | + | chr7.3:943565-943584 | MS.gene050649:intron | 35.0% | |
| AATTTCCAAATGGATCCTCT+TGG | + | chr7.3:946338-946357 | MS.gene050649:CDS | 35.0% | |
| AATTTGTACCACAGTTGGTT+TGG | + | chr7.3:946140-946159 | MS.gene050649:CDS | 35.0% | |
| ACATTCTATAGGCAAAGGTA+TGG | + | chr7.3:942733-942752 | MS.gene050649:CDS | 35.0% | |
| ACTACCATTGTTCCTATCTT+TGG | + | chr7.3:943521-943540 | MS.gene050649:intron | 35.0% | |
| AGAGACATCATGCAAGAAAA+AGG | + | chr7.3:942795-942814 | MS.gene050649:CDS | 35.0% | |
| AGAGGATCCATTTGGAAATT+TGG | - | chr7.3:946338-946357 | None:intergenic | 35.0% | |
| AGTAGAGTTGTAATCCAAGA+AGG | - | chr7.3:945754-945773 | None:intergenic | 35.0% | |
| ATTATGTACATACCAGTCGA+AGG | - | chr7.3:941638-941657 | None:intergenic | 35.0% | |
| ATTCCAAGTTTCGCAAAATG+TGG | + | chr7.3:946117-946136 | MS.gene050649:CDS | 35.0% | |
| CAGGAAAATGTAGTTGGATT+TGG | + | chr7.3:943325-943344 | MS.gene050649:intron | 35.0% | |
| CATTCCCAAAACTATGTTCA+AGG | - | chr7.3:946189-946208 | None:intergenic | 35.0% | |
| CATTCTTCTTGAGACCAAAT+AGG | + | chr7.3:946093-946112 | MS.gene050649:CDS | 35.0% | |
| CCTTGTGAATGGAAAAAATG+TGG | - | chr7.3:944246-944265 | None:intergenic | 35.0% | |
| GAATCTATACCCAGATACAA+AGG | + | chr7.3:942941-942960 | MS.gene050649:intron | 35.0% | |
| GAATGTAGATAGAACCAAAG+GGG | - | chr7.3:945689-945708 | None:intergenic | 35.0% | |
| GATATATTCTGATAAGGTGG+AGG | - | chr7.3:943722-943741 | None:intergenic | 35.0% | |
| GGTATATATCCCTTTGTATC+TGG | - | chr7.3:942954-942973 | None:intergenic | 35.0% | |
| GTGAAACATTCTATAGGCAA+AGG | + | chr7.3:942728-942747 | MS.gene050649:CDS | 35.0% | |
| GTGAATGGAAAAAATGTGGT+TGG | - | chr7.3:944242-944261 | None:intergenic | 35.0% | |
| GTTACTATAACATGAGTCAG+TGG | - | chr7.3:945853-945872 | None:intergenic | 35.0% | |
| GTTGTTGCAAATAACTTGGT+TGG | + | chr7.3:942647-942666 | MS.gene050649:CDS | 35.0% | |
| TAGAAGTAGAACCAACAATG+AGG | - | chr7.3:943818-943837 | None:intergenic | 35.0% | |
| TCAGAAGTCATTGCAAACAA+AGG | + | chr7.3:944662-944681 | MS.gene050649:CDS | 35.0% | |
| TCTAGAGATGGAAAAATGGT+TGG | + | chr7.3:944560-944579 | MS.gene050649:CDS | 35.0% | |
| TGATCCAAAGATAGGAACAA+TGG | - | chr7.3:943528-943547 | None:intergenic | 35.0% | |
| TGCCAATATCTGAACATACA+TGG | - | chr7.3:946075-946094 | None:intergenic | 35.0% | |
| TTATGTACATACCAGTCGAA+GGG | - | chr7.3:941637-941656 | None:intergenic | 35.0% | |
| ! | AATGTTGATAAAAGGCGAAG+TGG | + | chr7.3:942263-942282 | MS.gene050649:CDS | 35.0% |
| ! | AGTTTGAGAGTACAAGAGTT+GGG | + | chr7.3:942287-942306 | MS.gene050649:CDS | 35.0% |
| ! | ATTCCACATTTTGCGAAACT+TGG | - | chr7.3:946123-946142 | None:intergenic | 35.0% |
| ! | CAAATCCAACTACATTTTCC+TGG | - | chr7.3:943327-943346 | None:intergenic | 35.0% |
| ! | CATTTGGAAATTTGGTGGAA+GGG | - | chr7.3:946330-946349 | None:intergenic | 35.0% |
| ! | GTCAACGAGATCTTATGTTT+TGG | - | chr7.3:945157-945176 | None:intergenic | 35.0% |
| ! | GTTAATGTTAAAAGGGGTGT+TGG | - | chr7.3:945086-945105 | None:intergenic | 35.0% |
| ! | TAAGATCTTTGGTTCAGCTA+TGG | + | chr7.3:943576-943595 | MS.gene050649:intron | 35.0% |
| ! | TTTTCTTCAGGTGCAAAATC+AGG | + | chr7.3:944869-944888 | MS.gene050649:CDS | 35.0% |
| !! | AACTTGGTTGGTGATAGAAA+AGG | + | chr7.3:942659-942678 | MS.gene050649:CDS | 35.0% |
| !! | ACTTGGTTGGTGATAGAAAA+GGG | + | chr7.3:942660-942679 | MS.gene050649:CDS | 35.0% |
| !! | AGCAGAGAGCTTTTTATTTG+AGG | + | chr7.3:945441-945460 | MS.gene050649:intron | 35.0% |
| !! | AGTCTCTTGCATTTCAAGTT+TGG | - | chr7.3:943432-943451 | None:intergenic | 35.0% |
| !! | GCAGAGAGCTTTTTATTTGA+GGG | + | chr7.3:945442-945461 | MS.gene050649:intron | 35.0% |
| !!! | CCACATTTTTTCCATTCACA+AGG | + | chr7.3:944243-944262 | MS.gene050649:intron | 35.0% |
| AATACACACAACTTTGCCTC+CGG | - | chr7.3:942429-942448 | None:intergenic | 40.0% | |
| AATGCTTGGAAGACAAGCTA+TGG | + | chr7.3:946227-946246 | MS.gene050649:CDS | 40.0% | |
| ACAAGCTATGGATTCCTTGT+TGG | + | chr7.3:946239-946258 | MS.gene050649:CDS | 40.0% | |
| ACACTGATCTGGTCTATGAA+TGG | + | chr7.3:943547-943566 | MS.gene050649:intron | 40.0% | |
| ACCACTCTTCTCATCAAACT+TGG | - | chr7.3:942840-942859 | None:intergenic | 40.0% | |
| ATCTTTGGATCACACTGATC+TGG | + | chr7.3:943536-943555 | MS.gene050649:intron | 40.0% | |
| CCTGAAGAATACTTAGCACA+AGG | - | chr7.3:945826-945845 | None:intergenic | 40.0% | |
| CCTTCCACCAAATTTCCAAA+TGG | + | chr7.3:946328-946347 | MS.gene050649:CDS | 40.0% | |
| CCTTGTGCTAAGTATTCTTC+AGG | + | chr7.3:945823-945842 | MS.gene050649:CDS | 40.0% | |
| CGAAACTTGGAATCCCTATT+TGG | - | chr7.3:946110-946129 | None:intergenic | 40.0% | |
| CTAACAACAAGACAGTTGAG+AGG | - | chr7.3:943459-943478 | None:intergenic | 40.0% | |
| GAAAAAGGAACAAGAGCAAG+TGG | + | chr7.3:942810-942829 | MS.gene050649:CDS | 40.0% | |
| GAAAAGGGTTGGAAGGAATA+AGG | + | chr7.3:942675-942694 | MS.gene050649:CDS | 40.0% | |
| GATCAGTGTGATCCAAAGAT+AGG | - | chr7.3:943536-943555 | None:intergenic | 40.0% | |
| GATCCATAGAACCTGCAAAA+GGG | - | chr7.3:945550-945569 | None:intergenic | 40.0% | |
| GATCTGATTGGAATTGGACT+CGG | - | chr7.3:944296-944315 | None:intergenic | 40.0% | |
| GGAAAGATTTCTTCTCCAAG+AGG | - | chr7.3:946356-946375 | None:intergenic | 40.0% | |
| GGATCCATTTGGAAATTTGG+TGG | - | chr7.3:946335-946354 | None:intergenic | 40.0% | |
| TACTGCCAGGAAAATGTAGT+TGG | + | chr7.3:943319-943338 | MS.gene050649:intron | 40.0% | |
| TCAAACATAAGGAACCCCTT+TGG | + | chr7.3:945672-945691 | MS.gene050649:CDS | 40.0% | |
| TGACCGTTTGAGAGAGTTTA+TGG | + | chr7.3:941829-941848 | MS.gene050649:intron | 40.0% | |
| TGGAAAAAATGTGGTTGGGA+TGG | - | chr7.3:944237-944256 | None:intergenic | 40.0% | |
| TGGTATGTGGACATGCATTT+GGG | - | chr7.3:945777-945796 | None:intergenic | 40.0% | |
| TGTCATCATGCTTTGACAGA+TGG | - | chr7.3:944829-944848 | None:intergenic | 40.0% | |
| TGTGGAATTTGTACCACAGT+TGG | + | chr7.3:946135-946154 | MS.gene050649:CDS | 40.0% | |
| TGTGTCATCTCCTAATGCAA+TGG | - | chr7.3:943651-943670 | None:intergenic | 40.0% | |
| TTGGATAGCTCAAGAGTTAG+AGG | - | chr7.3:945067-945086 | None:intergenic | 40.0% | |
| TTTGACAGATGGTGTTCATG+TGG | - | chr7.3:944818-944837 | None:intergenic | 40.0% | |
| TTTGTATCAGCATTAGCAGC+AGG | + | chr7.3:942320-942339 | MS.gene050649:CDS | 40.0% | |
| ! | AATGGTTGGTTCAAGTGCAA+TGG | + | chr7.3:944574-944593 | MS.gene050649:CDS | 40.0% |
| ! | AGCTATGGCCATCTTTTGTT+AGG | + | chr7.3:943591-943610 | MS.gene050649:intron | 40.0% |
| ! | AGTTTGGAATTTGGTGGTTG+TGG | - | chr7.3:943416-943435 | None:intergenic | 40.0% |
| ! | CAGTTTGAGAGTACAAGAGT+TGG | + | chr7.3:942286-942305 | MS.gene050649:CDS | 40.0% |
| ! | CCATTTGGAAATTTGGTGGA+AGG | - | chr7.3:946331-946350 | None:intergenic | 40.0% |
| ! | GCAGCCTTGAACATAGTTTT+GGG | + | chr7.3:946182-946201 | MS.gene050649:CDS | 40.0% |
| ! | GTGTAATGGTTGGTACTATG+AGG | - | chr7.3:943389-943408 | None:intergenic | 40.0% |
| ! | TATCCCTTTTGCAGGTTCTA+TGG | + | chr7.3:945544-945563 | MS.gene050649:intron | 40.0% |
| ! | TGCAGCCTTGAACATAGTTT+TGG | + | chr7.3:946181-946200 | MS.gene050649:CDS | 40.0% |
| ! | TGCGAGGTACTTCAAACATA+AGG | + | chr7.3:945661-945680 | MS.gene050649:CDS | 40.0% |
| !! | CTCTCAACTGTCTTGTTGTT+AGG | + | chr7.3:943457-943476 | MS.gene050649:intron | 40.0% |
| !! | GGGATTGGATTTTCTAGAGA+TGG | + | chr7.3:944548-944567 | MS.gene050649:CDS | 40.0% |
| !! | GTGGGATGGATTAATAAACG+TGG | + | chr7.3:944596-944615 | MS.gene050649:CDS | 40.0% |
| !! | TTGTGGTTTGGTGTAATGGT+TGG | - | chr7.3:943399-943418 | None:intergenic | 40.0% |
| !! | TTTCAAGTTGCTCCACTACT+TGG | + | chr7.3:943142-943161 | MS.gene050649:intron | 40.0% |
| !!! | TTGCTTTTTTGGACTCATCC+AGG | - | chr7.3:942466-942485 | None:intergenic | 40.0% |
| ACCAGATTCTCAAGGAAGTC+CGG | - | chr7.3:944192-944211 | None:intergenic | 45.0% | |
| AGGAGATGACACAACATCGT+CGG | + | chr7.3:943658-943677 | MS.gene050649:CDS | 45.0% | |
| ATACCAGCTCACAGAGGAAT+TGG | + | chr7.3:945791-945810 | MS.gene050649:CDS | 45.0% | |
| ATGGATGATCTCGCTAAAGG+TGG | - | chr7.3:944218-944237 | None:intergenic | 45.0% | |
| ATGGTGTTCATGTGGATGCT+TGG | - | chr7.3:944810-944829 | None:intergenic | 45.0% | |
| CAACAATTGCACCTACTGGT+AGG | - | chr7.3:945643-945662 | None:intergenic | 45.0% | |
| CAGTAGTATTCAGTACTGCC+AGG | + | chr7.3:943306-943325 | MS.gene050649:intron | 45.0% | |
| CCATTCTTCCAAACCAACTG+TGG | - | chr7.3:946151-946170 | None:intergenic | 45.0% | |
| CGGATCCTTAAGAAAGGCTT+CGG | - | chr7.3:944276-944295 | None:intergenic | 45.0% | |
| CTAGTTATCTTCTCCTGTGC+TGG | - | chr7.3:943175-943194 | None:intergenic | 45.0% | |
| CTCCAATATGCAAACCCGTT+TGG | + | chr7.3:943744-943763 | MS.gene050649:CDS | 45.0% | |
| CTGGTATGTGGACATGCATT+TGG | - | chr7.3:945778-945797 | None:intergenic | 45.0% | |
| CTTCTCCAAGAGGATCCATT+TGG | - | chr7.3:946346-946365 | None:intergenic | 45.0% | |
| GACTTCCTTGAGAATCTGGT+TGG | + | chr7.3:944192-944211 | MS.gene050649:intron | 45.0% | |
| GCCAAGTTTGATGAGAAGAG+TGG | + | chr7.3:942836-942855 | MS.gene050649:CDS | 45.0% | |
| GGATCCATAGAACCTGCAAA+AGG | - | chr7.3:945551-945570 | None:intergenic | 45.0% | |
| GGATCCTTAAGAAAGGCTTC+GGG | - | chr7.3:944275-944294 | None:intergenic | 45.0% | |
| GGTGATAGAAAAGGGTTGGA+AGG | + | chr7.3:942668-942687 | MS.gene050649:CDS | 45.0% | |
| GTCTGCAACATGTGCTACAA+GGG | + | chr7.3:941599-941618 | MS.gene050649:CDS | 45.0% | |
| GTTTGATGAGAAGAGTGGTG+AGG | + | chr7.3:942841-942860 | MS.gene050649:CDS | 45.0% | |
| TAGCGCTGCAATAACTTCGA+TGG | - | chr7.3:942536-942555 | None:intergenic | 45.0% | |
| TATCTGCACCCTACACAGTT+GGG | + | chr7.3:944519-944538 | MS.gene050649:CDS | 45.0% | |
| TATTCTGATAAGGTGGAGGG+AGG | - | chr7.3:943718-943737 | None:intergenic | 45.0% | |
| TCGGGTTCAAACCTTGTGAA+TGG | - | chr7.3:944257-944276 | None:intergenic | 45.0% | |
| TCTATGGATCCAGCATCCAA+TGG | + | chr7.3:945560-945579 | MS.gene050649:CDS | 45.0% | |
| TGAACCCGAAGCCTTTCTTA+AGG | + | chr7.3:944268-944287 | MS.gene050649:intron | 45.0% | |
| TGGACTCGGATCCTTAAGAA+AGG | - | chr7.3:944282-944301 | None:intergenic | 45.0% | |
| TGGGGATTAATCCTACCAGT+AGG | + | chr7.3:945629-945648 | MS.gene050649:CDS | 45.0% | |
| TTACCTTGATACCCTTCGAC+TGG | + | chr7.3:941623-941642 | MS.gene050649:CDS | 45.0% | |
| TTATCTGCACCCTACACAGT+TGG | + | chr7.3:944518-944537 | MS.gene050649:CDS | 45.0% | |
| ! | GCTATCGTTGATGAAGATGC+AGG | - | chr7.3:942383-942402 | None:intergenic | 45.0% |
| ! | GGAATTTGGTGGTTGTGGTT+TGG | - | chr7.3:943411-943430 | None:intergenic | 45.0% |
| ! | GTTGGTTCAAGTGCAATGGT+GGG | + | chr7.3:944578-944597 | MS.gene050649:CDS | 45.0% |
| ! | TGCCAAACGGGTTTGCATAT+TGG | - | chr7.3:943749-943768 | None:intergenic | 45.0% |
| ! | TTTTTGGACTCATCCAGGAC+TGG | - | chr7.3:942461-942480 | None:intergenic | 45.0% |
| !! | ATACCAGTCGAAGGGTATCA+AGG | - | chr7.3:941629-941648 | None:intergenic | 45.0% |
| !! | CCACAGTTGGTTTGGAAGAA+TGG | + | chr7.3:946148-946167 | MS.gene050649:CDS | 45.0% |
| !! | GGTTGGTGATAGAAAAGGGT+TGG | + | chr7.3:942664-942683 | MS.gene050649:CDS | 45.0% |
| !! | GTGGTTGTGGTTTGGTGTAA+TGG | - | chr7.3:943403-943422 | None:intergenic | 45.0% |
| AAATAACGTGCCTGCTGCTG+TGG | + | chr7.3:944697-944716 | MS.gene050649:CDS | 50.0% | |
| ATGAGTTCAAACCGAGGCGA+AGG | - | chr7.3:945042-945061 | None:intergenic | 50.0% | |
| ATGCCAATTCCTCTGTGAGC+TGG | - | chr7.3:945797-945816 | None:intergenic | 50.0% | |
| CAGTAGGTGCAATTGTTGCG+AGG | + | chr7.3:945645-945664 | MS.gene050649:CDS | 50.0% | |
| CTCGCAACAATTGCACCTAC+TGG | - | chr7.3:945647-945666 | None:intergenic | 50.0% | |
| CTGCTGCTGTGGCAACAAAT+GGG | + | chr7.3:944708-944727 | MS.gene050649:CDS | 50.0% | |
| GAGGTCATGAGTTCAAACCG+AGG | - | chr7.3:945048-945067 | None:intergenic | 50.0% | |
| GCAACAACAACAGACCTGAC+AGG | - | chr7.3:942635-942654 | None:intergenic | 50.0% | |
| GCAGCAGGCACGTTATTTAG+AGG | - | chr7.3:944695-944714 | None:intergenic | 50.0% | |
| GGGATGGATGATCTCGCTAA+AGG | - | chr7.3:944221-944240 | None:intergenic | 50.0% | |
| GGTCTGCAACATGTGCTACA+AGG | + | chr7.3:941598-941617 | MS.gene050649:CDS | 50.0% | |
| TATTCTTCCTGAGCCAGTCC+TGG | + | chr7.3:942445-942464 | MS.gene050649:CDS | 50.0% | |
| TCCGGACTTCCTTGAGAATC+TGG | + | chr7.3:944188-944207 | MS.gene050649:intron | 50.0% | |
| TGCTGCTGTGGCAACAAATG+GGG | + | chr7.3:944709-944728 | MS.gene050649:CDS | 50.0% | |
| TTCCTCTGTGAGCTGGTATG+TGG | - | chr7.3:945790-945809 | None:intergenic | 50.0% | |
| ! | CATCGTCGGAAAGTACATGC+AGG | + | chr7.3:943672-943691 | MS.gene050649:CDS | 50.0% |
| ! | GGTTGGTTCAAGTGCAATGG+TGG | + | chr7.3:944577-944596 | MS.gene050649:CDS | 50.0% |
| ! | GTTCAAGTGCAATGGTGGGA+TGG | + | chr7.3:944582-944601 | MS.gene050649:CDS | 50.0% |
| !! | GGACTTGCTACTGTCCTTCT+TGG | + | chr7.3:945737-945756 | MS.gene050649:CDS | 50.0% |
| !!! | GTTTTGGGAATGCAAGCAGC+AGG | + | chr7.3:946197-946216 | MS.gene050649:CDS | 50.0% |
| CAGCAGGAGCAACGAATGCT+TGG | + | chr7.3:946213-946232 | MS.gene050649:CDS | 55.0% | |
| CCTGCTGCTGTGGCAACAAA+TGG | + | chr7.3:944707-944726 | MS.gene050649:CDS | 55.0% | |
| GGTGGCCAACCAGATTCTCA+AGG | - | chr7.3:944200-944219 | None:intergenic | 55.0% | |
| GTCCACATACCAGCTCACAG+AGG | + | chr7.3:945785-945804 | MS.gene050649:CDS | 55.0% | |
| TGCACCCTACACAGTTGGGT+GGG | + | chr7.3:944523-944542 | MS.gene050649:CDS | 55.0% | |
| TTGCTCCACTACTTGGCTGC+TGG | + | chr7.3:943149-943168 | MS.gene050649:intron | 55.0% | |
| ! | CCATTTGTTGCCACAGCAGC+AGG | - | chr7.3:944710-944729 | None:intergenic | 55.0% |
| ACAGTTGGGTGGGTGGGGAT+TGG | + | chr7.3:944533-944552 | MS.gene050649:CDS | 60.0% | |
| ACCCTACACAGTTGGGTGGG+TGG | + | chr7.3:944526-944545 | MS.gene050649:CDS | 60.0% | |
| CCCACCCACCCAACTGTGTA+GGG | - | chr7.3:944530-944549 | None:intergenic | 60.0% | |
| CCCTACACAGTTGGGTGGGT+GGG | + | chr7.3:944527-944546 | MS.gene050649:CDS | 60.0% | |
| CCTACACAGTTGGGTGGGTG+GGG | + | chr7.3:944528-944547 | MS.gene050649:CDS | 60.0% | |
| CTGCACCCTACACAGTTGGG+TGG | + | chr7.3:944522-944541 | MS.gene050649:CDS | 60.0% | |
| !! | GACTCATCCAGGACTGGCTC+AGG | - | chr7.3:942455-942474 | None:intergenic | 60.0% |
| ACTTGGCTGCTGGCCAGCAC+AGG | + | chr7.3:943159-943178 | MS.gene050649:intron | 65.0% | |
| CCCCACCCACCCAACTGTGT+AGG | - | chr7.3:944531-944550 | None:intergenic | 65.0% | |
| GCTGGCCAGCAGCCAAGTAG+TGG | - | chr7.3:943157-943176 | None:intergenic | 65.0% | |
| TTGTCGCGCAGCAGCGGCAA+GGG | - | chr7.3:942405-942424 | None:intergenic | 65.0% | |
| TTTGTCGCGCAGCAGCGGCA+AGG | - | chr7.3:942406-942425 | None:intergenic | 65.0% | |
| ! | TCCGGTTTGTCGCGCAGCAG+CGG | - | chr7.3:942411-942430 | None:intergenic | 65.0% |
| GCCGCTGCTGCGCGACAAAC+CGG | + | chr7.3:942407-942426 | MS.gene050649:CDS | 70.0% | |
| GCTGCTGCGCGACAAACCGG+AGG | + | chr7.3:942410-942429 | MS.gene050649:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 941591 | 946472 | 941591 | ID=MS.gene050649 |
| chr7.3 | mRNA | 941591 | 946472 | 941591 | ID=MS.gene050649.t1;Parent=MS.gene050649 |
| chr7.3 | exon | 941591 | 941644 | 941591 | ID=MS.gene050649.t1.exon1;Parent=MS.gene050649.t1 |
| chr7.3 | CDS | 941591 | 941644 | 941591 | ID=cds.MS.gene050649.t1;Parent=MS.gene050649.t1 |
| chr7.3 | exon | 942257 | 942894 | 942257 | ID=MS.gene050649.t1.exon2;Parent=MS.gene050649.t1 |
| chr7.3 | CDS | 942257 | 942894 | 942257 | ID=cds.MS.gene050649.t1;Parent=MS.gene050649.t1 |
| chr7.3 | exon | 943613 | 943784 | 943613 | ID=MS.gene050649.t1.exon3;Parent=MS.gene050649.t1 |
| chr7.3 | CDS | 943613 | 943784 | 943613 | ID=cds.MS.gene050649.t1;Parent=MS.gene050649.t1 |
| chr7.3 | exon | 944485 | 944890 | 944485 | ID=MS.gene050649.t1.exon4;Parent=MS.gene050649.t1 |
| chr7.3 | CDS | 944485 | 944890 | 944485 | ID=cds.MS.gene050649.t1;Parent=MS.gene050649.t1 |
| chr7.3 | exon | 945558 | 945844 | 945558 | ID=MS.gene050649.t1.exon5;Parent=MS.gene050649.t1 |
| chr7.3 | CDS | 945558 | 945844 | 945558 | ID=cds.MS.gene050649.t1;Parent=MS.gene050649.t1 |
| chr7.3 | exon | 946086 | 946395 | 946086 | ID=MS.gene050649.t1.exon6;Parent=MS.gene050649.t1 |
| chr7.3 | CDS | 946086 | 946395 | 946086 | ID=cds.MS.gene050649.t1;Parent=MS.gene050649.t1 |
| chr7.3 | exon | 946468 | 946472 | 946468 | ID=MS.gene050649.t1.exon7;Parent=MS.gene050649.t1 |
| chr7.3 | CDS | 946468 | 946472 | 946468 | ID=cds.MS.gene050649.t1;Parent=MS.gene050649.t1 |
| Gene Sequence |
| Protein sequence |
