AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79911

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79911.t1 MTR_3g084630 98.227 282 5 0 1 282 1 282 0.0 582
MS.gene79911.t1 MTR_3g084620 97.872 282 6 0 1 282 1 282 0.0 580
MS.gene79911.t1 MTR_8g102220 86.170 282 26 3 1 281 1 270 6.28e-179 494
MS.gene79911.t1 MTR_8g081040 86.617 269 34 2 10 277 14 281 6.49e-178 491
MS.gene79911.t1 MTR_4g128410 71.956 271 70 1 14 278 11 281 1.41e-144 407
MS.gene79911.t1 MTR_7g093530 72.222 270 69 1 14 277 10 279 5.30e-142 400
MS.gene79911.t1 MTR_4g128580 72.285 267 64 1 21 277 19 285 1.56e-139 395
MS.gene79911.t1 MTR_4g128570 68.015 272 78 2 7 277 9 272 7.19e-137 387
MS.gene79911.t1 MTR_4g128400 63.604 283 97 1 1 277 1 283 3.70e-133 379
MS.gene79911.t1 MTR_2g038860 66.547 278 82 1 11 277 9 286 1.18e-132 377
MS.gene79911.t1 MTR_2g038705 66.547 278 82 1 11 277 9 286 1.18e-132 377
MS.gene79911.t1 MTR_4g126920 67.300 263 79 1 22 277 19 281 3.08e-131 374
MS.gene79911.t1 MTR_4g128590 64.948 291 72 4 1 277 1 275 1.81e-130 371
MS.gene79911.t1 MTR_5g091730 52.098 286 130 3 1 281 1 284 9.87e-107 311
MS.gene79911.t1 MTR_7g084770 52.740 292 126 3 1 281 1 291 1.67e-106 311
MS.gene79911.t1 MTR_7g084760 52.069 290 127 3 1 279 1 289 8.70e-105 306
MS.gene79911.t1 MTR_6g033055 51.712 292 123 4 7 281 1 291 5.81e-104 305
MS.gene79911.t1 MTR_7g084750 51.370 292 130 4 1 281 1 291 4.52e-103 302
MS.gene79911.t1 MTR_6g033085 51.027 292 131 3 1 281 1 291 8.60e-103 301
MS.gene79911.t1 MTR_8g102910 51.748 286 123 5 10 282 1 284 2.29e-101 298
MS.gene79911.t1 MTR_6g088320 48.936 282 129 3 14 282 9 288 5.35e-97 287
MS.gene79911.t1 MTR_3g089540 50.973 257 123 1 26 279 28 284 6.29e-96 284
MS.gene79911.t1 MTR_4g045853 49.286 280 122 5 14 277 13 288 9.19e-95 281
MS.gene79911.t1 MTR_1g105900 47.810 274 133 2 17 282 25 296 2.56e-94 280
MS.gene79911.t1 MTR_2g089140 48.136 295 127 7 1 279 4 288 2.79e-94 280
MS.gene79911.t1 MTR_4g097640 48.387 279 135 4 6 277 11 287 2.10e-93 278
MS.gene79911.t1 MTR_4g097670 48.387 279 135 4 6 277 11 287 2.10e-93 278
MS.gene79911.t1 MTR_4g097700 50.193 259 121 3 26 277 67 324 3.74e-92 276
MS.gene79911.t1 MTR_1g105495 44.604 278 142 3 11 277 18 294 7.12e-84 254
MS.gene79911.t1 MTR_2g089140 52.655 226 91 4 69 279 1 225 2.72e-83 249
MS.gene79911.t1 MTR_8g013055 44.615 260 129 4 28 277 31 285 3.86e-78 239
MS.gene79911.t1 MTR_7g102260 41.961 255 132 5 25 268 34 283 2.52e-63 201
MS.gene79911.t1 MTR_7g056090 40.075 267 145 6 10 265 11 273 1.42e-62 199
MS.gene79911.t1 MTR_2g095800 41.065 263 136 6 18 268 46 301 1.86e-60 194
MS.gene79911.t1 MTR_4g057450 41.667 264 133 7 27 277 49 304 3.71e-60 193
MS.gene79911.t1 MTR_1g063020 40.152 264 141 6 25 277 37 294 2.50e-59 191
MS.gene79911.t1 MTR_2g049130 38.610 259 142 7 28 278 29 278 6.68e-56 182
MS.gene79911.t1 MTR_1g033420 37.548 261 150 6 28 277 33 291 2.34e-52 174
MS.gene79911.t1 MTR_2g049030 35.714 252 148 6 28 271 30 275 2.53e-51 170
MS.gene79911.t1 MTR_5g029100 35.714 266 153 7 28 277 42 305 2.74e-50 169
MS.gene79911.t1 MTR_8g064180 34.586 266 151 8 32 278 50 311 1.62e-49 166
MS.gene79911.t1 MTR_5g029100 34.363 259 146 8 41 277 18 274 9.86e-46 156
MS.gene79911.t1 MTR_8g090100 34.601 263 157 5 28 277 21 281 1.75e-44 153
MS.gene79911.t1 MTR_8g479340 30.769 195 54 8 97 277 8 135 1.40e-16 75.1
MS.gene79911.t1 MTR_8g032640 32.558 172 108 5 50 219 33 198 1.13e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79911.t1 AT3G23730 72.378 286 68 2 7 281 5 290 1.01e-164 459
MS.gene79911.t1 AT4G14130 73.264 288 70 2 1 281 1 288 7.25e-164 456
MS.gene79911.t1 AT4G25810 65.091 275 88 1 11 277 9 283 1.30e-133 380
MS.gene79911.t1 AT5G57550 64.981 257 87 1 25 278 27 283 2.04e-129 369
MS.gene79911.t1 AT4G30270 64.885 262 84 1 16 277 12 265 2.30e-129 368
MS.gene79911.t1 AT5G57560 62.455 277 91 2 10 277 9 281 4.02e-129 368
MS.gene79911.t1 AT5G57530 63.846 260 86 2 25 277 24 282 8.25e-124 355
MS.gene79911.t1 AT5G57540 62.692 260 89 2 25 277 23 281 1.74e-122 351
MS.gene79911.t1 AT2G18800 58.571 280 97 2 17 277 17 296 2.38e-121 349
MS.gene79911.t1 AT4G25820 63.534 266 89 2 20 278 22 286 1.55e-120 347
MS.gene79911.t1 AT5G48070 57.565 271 112 2 10 277 11 281 1.11e-117 339
MS.gene79911.t1 AT4G30290 58.672 271 109 2 10 277 6 276 2.73e-110 320
MS.gene79911.t1 AT4G30280 57.778 270 111 2 11 277 12 281 3.54e-109 317
MS.gene79911.t1 AT1G65310 60.000 260 101 2 21 277 44 303 3.39e-108 316
MS.gene79911.t1 AT1G65310 60.000 260 101 2 21 277 22 281 4.42e-108 315
MS.gene79911.t1 AT5G13870 54.406 261 111 2 28 281 32 291 7.73e-102 299
MS.gene79911.t1 AT5G13870 54.406 261 111 2 28 281 32 291 7.73e-102 299
MS.gene79911.t1 AT5G13870 54.406 261 111 2 28 281 32 291 7.73e-102 299
MS.gene79911.t1 AT2G06850 52.281 285 122 3 10 281 11 294 6.02e-101 297
MS.gene79911.t1 AT4G03210 48.936 282 130 5 10 281 11 288 1.13e-96 286
MS.gene79911.t1 AT2G14620 45.833 288 141 2 10 282 12 299 4.47e-94 280
MS.gene79911.t1 AT2G06850 57.143 231 91 2 58 281 5 234 6.12e-93 275
MS.gene79911.t1 AT4G28850 48.252 286 132 5 10 282 10 292 1.50e-92 276
MS.gene79911.t1 AT5G65730 48.921 278 126 6 11 278 20 291 8.84e-92 274
MS.gene79911.t1 AT4G37800 48.120 266 126 4 21 277 27 289 7.02e-89 266
MS.gene79911.t1 AT4G03210 52.381 231 100 3 60 281 31 260 4.73e-87 261
MS.gene79911.t1 AT1G11545 45.357 280 139 4 11 277 21 299 2.71e-86 260
MS.gene79911.t1 AT2G14620 48.276 232 112 1 59 282 18 249 1.18e-82 249
MS.gene79911.t1 AT2G14620 48.879 223 106 1 68 282 16 238 1.44e-80 243
MS.gene79911.t1 AT4G13090 40.893 291 151 4 7 278 1 289 3.72e-75 231
MS.gene79911.t1 AT3G25050 41.313 259 139 3 28 277 35 289 3.23e-74 229
MS.gene79911.t1 AT4G13080 45.038 262 125 7 28 278 39 292 3.55e-72 224
MS.gene79911.t1 AT2G36870 42.857 266 135 6 25 279 40 299 1.19e-63 202
MS.gene79911.t1 AT3G44990 40.221 271 143 8 18 277 31 293 1.01e-58 189
MS.gene79911.t1 AT1G14720 34.783 299 170 7 7 281 4 301 2.78e-53 176
MS.gene79911.t1 AT1G32170 34.471 293 163 8 8 277 7 293 3.01e-53 177
MS.gene79911.t1 AT1G10550 34.926 272 142 8 32 277 47 309 3.69e-52 173
MS.gene79911.t1 AT2G01850 31.773 299 179 6 7 281 4 301 1.87e-50 169
MS.gene79911.t1 AT4G18990 34.601 263 140 7 50 282 62 322 1.99e-44 154
MS.gene79911.t1 AT3G48580 33.603 247 146 7 35 277 41 273 3.66e-43 149
MS.gene79911.t1 AT4G18990 33.755 237 121 8 77 282 17 248 5.76e-37 132
MS.gene79911.t1 AT3G48580 31.696 224 136 6 58 277 4 214 2.18e-36 129
MS.gene79911.t1 AT2G36870 43.262 141 70 3 25 157 40 178 2.59e-30 112
MS.gene79911.t1 AT3G48580 29.555 247 136 8 35 277 41 253 9.44e-28 108

Find 65 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCATTGGTTGGTTCTT+TGG 0.220550 3.1:-65186608 None:intergenic
TTCTCATTGGTTGGTTCTTT+GGG 0.221209 3.1:-65186607 None:intergenic
TCGAAGAAAGAGTATTTATT+TGG 0.223648 3.1:+65185975 MS.gene79911:CDS
GCATTCTTGAAGATCCTTAT+AGG 0.241455 3.1:-65186563 None:intergenic
ATTAATATGGCTTCTTCTAT+TGG 0.241934 3.1:+65185780 None:intergenic
CACTCAGCAGGAATACCTTC+TGG 0.340561 3.1:-65186881 None:intergenic
CATTCTTGAAGATCCTTATA+GGG 0.350905 3.1:-65186562 None:intergenic
TAGTTGATAACATCCCTATA+AGG 0.361735 3.1:+65186549 MS.gene79911:CDS
GTCTCTGGAACGCTGATGAT+TGG 0.365899 3.1:+65186639 MS.gene79911:CDS
TATTACTTACATAATGTGTT+GGG 0.366572 3.1:-65186444 None:intergenic
TTGCGGTAGTAAGCTGTAAA+TGG 0.368145 3.1:-65186704 None:intergenic
GAGAACAACAATTCTACCTT+TGG 0.383624 3.1:+65186375 MS.gene79911:CDS
ACCAAGACTTTGATCTAACT+TGG 0.385781 3.1:+65185871 MS.gene79911:CDS
ATTGGTTGGTTCTTTGGGAA+TGG 0.395735 3.1:-65186602 None:intergenic
ATGCAACTCAAACTTGTTGC+TGG 0.403109 3.1:+65186008 MS.gene79911:CDS
AGACTTGAATAGATTCTCAT+TGG 0.409589 3.1:-65186620 None:intergenic
ATAAATACTCTTTCTTCGAT+TGG 0.413180 3.1:-65185971 None:intergenic
AGCAATGAACTTGATGCTTA+TGG 0.415779 3.1:+65186788 MS.gene79911:CDS
CTTGTTGCTGGAAATTCTGC+TGG 0.421705 3.1:+65186020 MS.gene79911:CDS
TTCAAGAATGCTGAATCAAT+TGG 0.430099 3.1:+65186575 MS.gene79911:CDS
TGAGAATCTATTCAAGTCTC+TGG 0.437244 3.1:+65186624 MS.gene79911:CDS
AGAGTAAGTGTGGAAGTTCT+TGG 0.438651 3.1:-65186408 None:intergenic
CTAGACAAAACCTCGGGCTC+TGG 0.447506 3.1:+65185945 MS.gene79911:CDS
TCCACACTTACTCTATCATC+TGG 0.453939 3.1:+65186417 MS.gene79911:CDS
GTAAGCTGTAAATGGTGCTT+TGG 0.464723 3.1:-65186696 None:intergenic
TTGAATAGATTCTCATTGGT+TGG 0.466553 3.1:-65186616 None:intergenic
ATATTACTTACATAATGTGT+TGG 0.469145 3.1:-65186445 None:intergenic
TCTCTGGAACGCTGATGATT+GGG 0.473167 3.1:+65186640 MS.gene79911:CDS
AGTCATGATAATTAGCTCCT+TGG 0.482305 3.1:+65185824 MS.gene79911:CDS
CTGCTGAGTGCAAGCGTCCA+AGG 0.485478 3.1:+65186894 MS.gene79911:CDS
TCATTGATCTCTCAGAACCT+TGG 0.486786 3.1:-65186911 None:intergenic
ACTCAGCAGGAATACCTTCT+GGG 0.494454 3.1:-65186880 None:intergenic
AAGTGTGGAAGTTCTTGGTT+GGG 0.498153 3.1:-65186403 None:intergenic
CTTGGACGCTTGCACTCAGC+AGG 0.499944 3.1:-65186893 None:intergenic
TTGGGCTACAAGAGGTGGTT+TGG 0.508778 3.1:+65186658 MS.gene79911:CDS
CCAAGACTTTGATCTAACTT+GGG 0.509119 3.1:+65185872 MS.gene79911:CDS
CACCGTGCTAAGATATTCAA+TGG 0.519496 3.1:+65185900 MS.gene79911:CDS
CCCAAGTTAGATCAAAGTCT+TGG 0.522663 3.1:-65185872 None:intergenic
AAATCTATTTCGTCATGAGT+TGG 0.533351 3.1:-65186278 None:intergenic
ACGTTCGTATGAAGAATGTA+AGG 0.534219 3.1:-65186329 None:intergenic
GGCATGAACAATATGCTGAT+TGG 0.535335 3.1:+65185801 MS.gene79911:CDS
GAGTTCTTGGGAAATGTTAG+CGG 0.540045 3.1:+65186302 MS.gene79911:CDS
ATGGTAGAAGAAGATTGAGA+TGG 0.542822 3.1:+65186807 MS.gene79911:CDS
TAAGTGTGGAAGTTCTTGGT+TGG 0.544799 3.1:-65186404 None:intergenic
GTGGTTTGGTGAAAACTGAT+TGG 0.548484 3.1:+65186672 MS.gene79911:CDS
TGCAGAATCAGAGAAGGAAG+TGG 0.555907 3.1:-65186759 None:intergenic
ACTCAGTAGCTTTGAAATTG+CGG 0.559212 3.1:-65186721 None:intergenic
ATTACTTACATAATGTGTTG+GGG 0.569004 3.1:-65186443 None:intergenic
CGATTGGAAGCCAGAGCCCG+AGG 0.573236 3.1:-65185955 None:intergenic
GATGATTGGGCTACAAGAGG+TGG 0.583367 3.1:+65186653 MS.gene79911:CDS
TCCAGATGATAGAGTAAGTG+TGG 0.584360 3.1:-65186418 None:intergenic
AGCAGAACATGTAGCTACCA+AGG 0.586171 3.1:-65185841 None:intergenic
TGGTAGAAGAAGATTGAGAT+GGG 0.586469 3.1:+65186808 MS.gene79911:CDS
TCTTGGTTGGGTCAAACCAA+AGG 0.586504 3.1:-65186391 None:intergenic
CTTTCTCTAGACAAAACCTC+GGG 0.590397 3.1:+65185939 MS.gene79911:CDS
CTGCATTGCAGAATCAGAGA+AGG 0.608965 3.1:-65186765 None:intergenic
TCTTTCTCTAGACAAAACCT+CGG 0.610000 3.1:+65185938 MS.gene79911:CDS
GAAGGAAGTGGAAGAGACAG+AGG 0.615542 3.1:-65186747 None:intergenic
CAAGACTTTGATCTAACTTG+GGG 0.623881 3.1:+65185873 MS.gene79911:CDS
CACCATTGAATATCTTAGCA+CGG 0.635606 3.1:-65185902 None:intergenic
GCTGATGATTGGGCTACAAG+AGG 0.647339 3.1:+65186650 MS.gene79911:CDS
GATCTTAAGCGATTCCCAGA+AGG 0.649786 3.1:+65186866 MS.gene79911:CDS
CGTGCTAAGATATTCAATGG+TGG 0.692895 3.1:+65185903 MS.gene79911:CDS
ATGGTGCAGTTGTCATCACA+AGG 0.694897 3.1:+65186254 MS.gene79911:intron
CATTGAATATCTTAGCACGG+TGG 0.785980 3.1:-65185899 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAATAAAGTTACTTT+TGG - chr3.1:65186133-65186152 None:intergenic 10.0%
!! AATATATGGTATACTATATG+AGG - chr3.1:65186099-65186118 None:intergenic 20.0%
!! ATATTACTTACATAATGTGT+TGG - chr3.1:65186448-65186467 None:intergenic 20.0%
!! TATTACTTACATAATGTGTT+GGG - chr3.1:65186447-65186466 None:intergenic 20.0%
!! TGGAAATGAATTAGAATATA+TGG - chr3.1:65186113-65186132 None:intergenic 20.0%
!!! TTTTGTATTGTGGTAAATAA+CGG + chr3.1:65186217-65186236 MS.gene79911:intron 20.0%
! ATAAATACTCTTTCTTCGAT+TGG - chr3.1:65185974-65185993 None:intergenic 25.0%
! ATTACTTACATAATGTGTTG+GGG - chr3.1:65186446-65186465 None:intergenic 25.0%
!!! GAAATAGATTTTGAGTTCTT+GGG + chr3.1:65186290-65186309 MS.gene79911:CDS 25.0%
!!! TCGAAGAAAGAGTATTTATT+TGG + chr3.1:65185975-65185994 MS.gene79911:CDS 25.0%
AAATCTATTTCGTCATGAGT+TGG - chr3.1:65186281-65186300 None:intergenic 30.0%
AACGGTACTATATGCATATA+TGG + chr3.1:65186235-65186254 MS.gene79911:intron 30.0%
AGACTTGAATAGATTCTCAT+TGG - chr3.1:65186623-65186642 None:intergenic 30.0%
CATTCTTGAAGATCCTTATA+GGG - chr3.1:65186565-65186584 None:intergenic 30.0%
CTATATGAGGAAGTAAAGAA+AGG - chr3.1:65186086-65186105 None:intergenic 30.0%
TTCAAGAATGCTGAATCAAT+TGG + chr3.1:65186575-65186594 MS.gene79911:CDS 30.0%
TTGAATAGATTCTCATTGGT+TGG - chr3.1:65186619-65186638 None:intergenic 30.0%
! TTGCTTCTTCTTTTGTATTG+TGG + chr3.1:65186207-65186226 MS.gene79911:intron 30.0%
!! TAGTTGATAACATCCCTATA+AGG + chr3.1:65186549-65186568 MS.gene79911:CDS 30.0%
!!! CGAAATAGATTTTGAGTTCT+TGG + chr3.1:65186289-65186308 MS.gene79911:CDS 30.0%
ACCAAGACTTTGATCTAACT+TGG + chr3.1:65185871-65185890 MS.gene79911:CDS 35.0%
ACGTTCGTATGAAGAATGTA+AGG - chr3.1:65186332-65186351 None:intergenic 35.0%
AGCAATGAACTTGATGCTTA+TGG + chr3.1:65186788-65186807 MS.gene79911:CDS 35.0%
AGTCATGATAATTAGCTCCT+TGG + chr3.1:65185824-65185843 MS.gene79911:CDS 35.0%
ATGGTAGAAGAAGATTGAGA+TGG + chr3.1:65186807-65186826 MS.gene79911:CDS 35.0%
CAAGACTTTGATCTAACTTG+GGG + chr3.1:65185873-65185892 MS.gene79911:CDS 35.0%
CACCATTGAATATCTTAGCA+CGG - chr3.1:65185905-65185924 None:intergenic 35.0%
CCAAGACTTTGATCTAACTT+GGG + chr3.1:65185872-65185891 MS.gene79911:CDS 35.0%
GAGAACAACAATTCTACCTT+TGG + chr3.1:65186375-65186394 MS.gene79911:CDS 35.0%
GCATTCTTGAAGATCCTTAT+AGG - chr3.1:65186566-65186585 None:intergenic 35.0%
TCTTTCTCTAGACAAAACCT+CGG + chr3.1:65185938-65185957 MS.gene79911:CDS 35.0%
TGAGAATCTATTCAAGTCTC+TGG + chr3.1:65186624-65186643 MS.gene79911:CDS 35.0%
TGGTAGAAGAAGATTGAGAT+GGG + chr3.1:65186808-65186827 MS.gene79911:CDS 35.0%
! ATTCTCATTGGTTGGTTCTT+TGG - chr3.1:65186611-65186630 None:intergenic 35.0%
! TTCTCATTGGTTGGTTCTTT+GGG - chr3.1:65186610-65186629 None:intergenic 35.0%
!! ACTCAGTAGCTTTGAAATTG+CGG - chr3.1:65186724-65186743 None:intergenic 35.0%
AAGTGTGGAAGTTCTTGGTT+GGG - chr3.1:65186406-65186425 None:intergenic 40.0%
AGAGTAAGTGTGGAAGTTCT+TGG - chr3.1:65186411-65186430 None:intergenic 40.0%
CACCGTGCTAAGATATTCAA+TGG + chr3.1:65185900-65185919 MS.gene79911:CDS 40.0%
CATTGAATATCTTAGCACGG+TGG - chr3.1:65185902-65185921 None:intergenic 40.0%
CCCAAGTTAGATCAAAGTCT+TGG - chr3.1:65185875-65185894 None:intergenic 40.0%
CGTGCTAAGATATTCAATGG+TGG + chr3.1:65185903-65185922 MS.gene79911:CDS 40.0%
CTTTCTCTAGACAAAACCTC+GGG + chr3.1:65185939-65185958 MS.gene79911:CDS 40.0%
GAGTTCTTGGGAAATGTTAG+CGG + chr3.1:65186302-65186321 MS.gene79911:CDS 40.0%
GGCATGAACAATATGCTGAT+TGG + chr3.1:65185801-65185820 MS.gene79911:CDS 40.0%
GTAAGCTGTAAATGGTGCTT+TGG - chr3.1:65186699-65186718 None:intergenic 40.0%
TAAGTGTGGAAGTTCTTGGT+TGG - chr3.1:65186407-65186426 None:intergenic 40.0%
TCCACACTTACTCTATCATC+TGG + chr3.1:65186417-65186436 MS.gene79911:CDS 40.0%
TCCAGATGATAGAGTAAGTG+TGG - chr3.1:65186421-65186440 None:intergenic 40.0%
TTGCGGTAGTAAGCTGTAAA+TGG - chr3.1:65186707-65186726 None:intergenic 40.0%
! AACGTGTTTTCTCAAGGCAA+AGG + chr3.1:65186347-65186366 MS.gene79911:CDS 40.0%
! ATTGGTTGGTTCTTTGGGAA+TGG - chr3.1:65186605-65186624 None:intergenic 40.0%
! CATACGAACGTGTTTTCTCA+AGG + chr3.1:65186341-65186360 MS.gene79911:CDS 40.0%
!! ATGCAACTCAAACTTGTTGC+TGG + chr3.1:65186008-65186027 MS.gene79911:CDS 40.0%
!! GTGGTTTGGTGAAAACTGAT+TGG + chr3.1:65186672-65186691 MS.gene79911:CDS 40.0%
ACTCAGCAGGAATACCTTCT+GGG - chr3.1:65186883-65186902 None:intergenic 45.0%
AGCAGAACATGTAGCTACCA+AGG - chr3.1:65185844-65185863 None:intergenic 45.0%
ATGGTGCAGTTGTCATCACA+AGG + chr3.1:65186254-65186273 MS.gene79911:intron 45.0%
CTGCATTGCAGAATCAGAGA+AGG - chr3.1:65186768-65186787 None:intergenic 45.0%
CTTGTTGCTGGAAATTCTGC+TGG + chr3.1:65186020-65186039 MS.gene79911:CDS 45.0%
GATCTTAAGCGATTCCCAGA+AGG + chr3.1:65186866-65186885 MS.gene79911:CDS 45.0%
TCTTGGTTGGGTCAAACCAA+AGG - chr3.1:65186394-65186413 None:intergenic 45.0%
TGCAGAATCAGAGAAGGAAG+TGG - chr3.1:65186762-65186781 None:intergenic 45.0%
!! TCTCTGGAACGCTGATGATT+GGG + chr3.1:65186640-65186659 MS.gene79911:CDS 45.0%
CACTCAGCAGGAATACCTTC+TGG - chr3.1:65186884-65186903 None:intergenic 50.0%
GAAGGAAGTGGAAGAGACAG+AGG - chr3.1:65186750-65186769 None:intergenic 50.0%
GATGATTGGGCTACAAGAGG+TGG + chr3.1:65186653-65186672 MS.gene79911:CDS 50.0%
GCTGATGATTGGGCTACAAG+AGG + chr3.1:65186650-65186669 MS.gene79911:CDS 50.0%
TTGGGCTACAAGAGGTGGTT+TGG + chr3.1:65186658-65186677 MS.gene79911:CDS 50.0%
!! GTCTCTGGAACGCTGATGAT+TGG + chr3.1:65186639-65186658 MS.gene79911:CDS 50.0%
CTAGACAAAACCTCGGGCTC+TGG + chr3.1:65185945-65185964 MS.gene79911:CDS 55.0%
CTGCTGAGTGCAAGCGTCCA+AGG + chr3.1:65186894-65186913 MS.gene79911:CDS 60.0%
CTTGGACGCTTGCACTCAGC+AGG - chr3.1:65186896-65186915 None:intergenic 60.0%
CGATTGGAAGCCAGAGCCCG+AGG - chr3.1:65185958-65185977 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 65185786 65186922 65185786 ID=MS.gene79911
chr3.1 mRNA 65185786 65186922 65185786 ID=MS.gene79911.t1;Parent=MS.gene79911
chr3.1 exon 65185786 65186061 65185786 ID=MS.gene79911.t1.exon1;Parent=MS.gene79911.t1
chr3.1 CDS 65185786 65186061 65185786 ID=cds.MS.gene79911.t1;Parent=MS.gene79911.t1
chr3.1 exon 65186263 65186456 65186263 ID=MS.gene79911.t1.exon2;Parent=MS.gene79911.t1
chr3.1 CDS 65186263 65186456 65186263 ID=cds.MS.gene79911.t1;Parent=MS.gene79911.t1
chr3.1 exon 65186544 65186922 65186544 ID=MS.gene79911.t1.exon3;Parent=MS.gene79911.t1
chr3.1 CDS 65186544 65186922 65186544 ID=cds.MS.gene79911.t1;Parent=MS.gene79911.t1
Gene Sequence

>MS.gene79911

ATGGCTTCTTCTATTGGCATGAACAATATGCTGATTGGAGTCATGATAATTAGCTCCTTGGTAGCTACATGTTCTGCTAACTTCAACCAAGACTTTGATCTAACTTGGGGTGACCACCGTGCTAAGATATTCAATGGTGGTCAACTTCTATCTCTTTCTCTAGACAAAACCTCGGGCTCTGGCTTCCAATCGAAGAAAGAGTATTTATTTGGTAGAATTGATATGCAACTCAAACTTGTTGCTGGAAATTCTGCTGGAACTGTTACTGCTTATTACGTACGTTCTTCATTTTTTATTCCTTTCTTTACTTCCTCATATAGTATACCATATATTCTAATTCATTTCCAAAAGTAACTTTATTTAAAATAGTTTCTACACGATATCAAAAGCTTTTATGAGAATACTTGATTCTGTTTTTGTTTTGCTTCTTCTTTTGTATTGTGGTAAATAACGGTACTATATGCATATATGGTGCAGTTGTCATCACAAGGACCAACTCATGACGAAATAGATTTTGAGTTCTTGGGAAATGTTAGCGGTGATCCTTACATTCTTCATACGAACGTGTTTTCTCAAGGCAAAGGAAACAGAGAACAACAATTCTACCTTTGGTTTGACCCAACCAAGAACTTCCACACTTACTCTATCATCTGGAAGCCCCAACACATTATGTAAGTAATATATATTTAAGTTTGATCAAACAGCTCAATTAAGCGCTTATAAAAAAAACGCTAACAAGTTCGTATAACTAAATGCAGATTTTTAGTTGATAACATCCCTATAAGGATCTTCAAGAATGCTGAATCAATTGGTATTCCATTCCCAAAGAACCAACCAATGAGAATCTATTCAAGTCTCTGGAACGCTGATGATTGGGCTACAAGAGGTGGTTTGGTGAAAACTGATTGGTCCAAAGCACCATTTACAGCTTACTACCGCAATTTCAAAGCTACTGAGTTAACCTCTGTCTCTTCCACTTCCTTCTCTGATTCTGCAATGCAGAGCAATGAACTTGATGCTTATGGTAGAAGAAGATTGAGATGGGTTCAGAAGTACTTTATGATCTATAATTACTGCAACGATCTTAAGCGATTCCCAGAAGGTATTCCTGCTGAGTGCAAGCGTCCAAGGTTCTGA
Protein sequence

>MS.gene79911.t1

MASSIGMNNMLIGVMIISSLVATCSANFNQDFDLTWGDHRAKIFNGGQLLSLSLDKTSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFSQGKGNREQQFYLWFDPTKNFHTYSIIWKPQHIIFLVDNIPIRIFKNAESIGIPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATELTSVSSTSFSDSAMQSNELDAYGRRRLRWVQKYFMIYNYCNDLKRFPEGIPAECKRPRF