AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79912

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79912.t1 MTR_3g084630 98.582 282 4 0 1 282 1 282 0.0 583
MS.gene79912.t1 MTR_3g084620 98.227 282 5 0 1 282 1 282 0.0 580
MS.gene79912.t1 MTR_8g102220 86.170 282 26 3 1 281 1 270 6.71e-179 494
MS.gene79912.t1 MTR_8g081040 86.245 269 35 2 10 277 14 281 7.16e-178 491
MS.gene79912.t1 MTR_4g128410 72.426 272 67 2 14 278 11 281 8.19e-144 405
MS.gene79912.t1 MTR_7g093530 72.593 270 68 1 14 277 10 279 8.96e-142 400
MS.gene79912.t1 MTR_4g128580 72.285 267 64 1 21 277 19 285 1.94e-139 394
MS.gene79912.t1 MTR_4g128570 68.382 272 77 2 7 277 9 272 2.60e-137 389
MS.gene79912.t1 MTR_4g128400 63.958 283 96 1 1 277 1 283 4.71e-133 378
MS.gene79912.t1 MTR_2g038860 65.468 278 85 1 11 277 9 286 2.35e-132 377
MS.gene79912.t1 MTR_2g038705 65.468 278 85 1 11 277 9 286 2.35e-132 377
MS.gene79912.t1 MTR_4g126920 67.681 263 78 1 22 277 19 281 5.27e-131 373
MS.gene79912.t1 MTR_4g128590 64.948 291 72 4 1 277 1 275 3.23e-130 370
MS.gene79912.t1 MTR_5g091730 52.465 284 132 2 1 281 1 284 1.92e-106 311
MS.gene79912.t1 MTR_7g084770 52.740 292 126 3 1 281 1 291 2.53e-106 311
MS.gene79912.t1 MTR_7g084760 52.069 290 127 3 1 279 1 289 1.18e-104 306
MS.gene79912.t1 MTR_6g033055 51.712 292 123 4 7 281 1 291 7.07e-104 304
MS.gene79912.t1 MTR_7g084750 50.342 292 133 3 1 281 1 291 1.14e-102 301
MS.gene79912.t1 MTR_6g033085 51.027 292 131 3 1 281 1 291 1.35e-102 301
MS.gene79912.t1 MTR_8g102910 51.748 286 123 5 10 282 1 284 2.31e-101 298
MS.gene79912.t1 MTR_6g088320 49.291 282 128 3 14 282 9 288 2.55e-97 288
MS.gene79912.t1 MTR_3g089540 51.351 259 119 2 26 279 28 284 2.90e-96 285
MS.gene79912.t1 MTR_4g045853 49.286 280 122 5 14 277 13 288 9.09e-95 281
MS.gene79912.t1 MTR_2g089140 47.797 295 128 7 1 279 4 288 3.05e-94 280
MS.gene79912.t1 MTR_1g105900 47.810 274 133 2 17 282 25 296 9.37e-94 279
MS.gene79912.t1 MTR_4g097640 48.387 279 135 4 6 277 11 287 1.60e-93 278
MS.gene79912.t1 MTR_4g097670 48.387 279 135 4 6 277 11 287 1.60e-93 278
MS.gene79912.t1 MTR_4g097700 50.193 259 121 3 26 277 67 324 2.50e-92 276
MS.gene79912.t1 MTR_1g105495 44.604 278 142 3 11 277 18 294 7.36e-84 254
MS.gene79912.t1 MTR_2g089140 52.212 226 92 4 69 279 1 225 3.00e-83 249
MS.gene79912.t1 MTR_8g013055 45.000 260 128 4 28 277 31 285 1.97e-78 239
MS.gene79912.t1 MTR_7g102260 41.569 255 133 5 25 268 34 283 8.94e-63 199
MS.gene79912.t1 MTR_7g056090 39.850 266 145 6 11 265 12 273 5.13e-62 197
MS.gene79912.t1 MTR_2g095800 40.684 263 137 6 18 268 46 301 5.25e-60 193
MS.gene79912.t1 MTR_4g057450 41.603 262 136 6 27 277 49 304 5.65e-60 193
MS.gene79912.t1 MTR_1g063020 39.773 264 142 6 25 277 37 294 7.60e-59 189
MS.gene79912.t1 MTR_2g049130 38.610 259 142 7 28 278 29 278 7.85e-56 181
MS.gene79912.t1 MTR_1g033420 37.931 261 149 6 28 277 33 291 2.13e-52 174
MS.gene79912.t1 MTR_2g049030 35.714 252 148 6 28 271 30 275 4.37e-51 169
MS.gene79912.t1 MTR_5g029100 36.090 266 152 7 28 277 42 305 1.95e-50 169
MS.gene79912.t1 MTR_8g064180 35.338 266 149 8 32 278 50 311 4.54e-50 167
MS.gene79912.t1 MTR_5g029100 34.749 259 145 8 41 277 18 274 4.99e-46 157
MS.gene79912.t1 MTR_8g090100 34.601 263 157 5 28 277 21 281 2.86e-44 153
MS.gene79912.t1 MTR_8g479340 30.256 195 55 8 97 277 8 135 2.22e-16 74.7
MS.gene79912.t1 MTR_8g032640 32.558 172 108 5 50 219 33 198 1.09e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79912.t1 AT3G23730 72.028 286 69 2 7 281 5 290 2.31e-164 457
MS.gene79912.t1 AT4G14130 73.264 288 70 2 1 281 1 288 2.79e-163 455
MS.gene79912.t1 AT4G25810 65.455 275 87 1 11 277 9 283 1.39e-133 379
MS.gene79912.t1 AT4G30270 64.885 262 84 1 16 277 12 265 2.16e-129 368
MS.gene79912.t1 AT5G57550 65.370 257 86 1 25 278 27 283 4.90e-129 368
MS.gene79912.t1 AT5G57560 62.455 277 91 2 10 277 9 281 6.03e-129 368
MS.gene79912.t1 AT5G57530 63.258 264 81 2 25 277 24 282 6.21e-124 355
MS.gene79912.t1 AT5G57540 62.500 264 83 3 25 277 23 281 2.82e-122 351
MS.gene79912.t1 AT2G18800 57.857 280 99 2 17 277 17 296 5.82e-121 348
MS.gene79912.t1 AT4G25820 62.782 266 91 2 20 278 22 286 6.28e-120 345
MS.gene79912.t1 AT5G48070 57.934 271 111 2 10 277 11 281 6.21e-118 340
MS.gene79912.t1 AT4G30290 58.303 271 110 2 10 277 6 276 8.42e-110 319
MS.gene79912.t1 AT4G30280 57.778 270 111 2 11 277 12 281 2.37e-109 318
MS.gene79912.t1 AT1G65310 60.000 260 101 2 21 277 44 303 2.22e-108 316
MS.gene79912.t1 AT1G65310 60.000 260 101 2 21 277 22 281 2.37e-108 315
MS.gene79912.t1 AT5G13870 54.406 261 111 2 28 281 32 291 1.03e-101 299
MS.gene79912.t1 AT5G13870 54.406 261 111 2 28 281 32 291 1.03e-101 299
MS.gene79912.t1 AT5G13870 54.406 261 111 2 28 281 32 291 1.03e-101 299
MS.gene79912.t1 AT2G06850 52.281 285 122 3 10 281 11 294 7.66e-101 297
MS.gene79912.t1 AT4G03210 48.936 282 130 5 10 281 11 288 2.34e-96 285
MS.gene79912.t1 AT2G14620 46.181 288 140 2 10 282 12 299 8.33e-94 279
MS.gene79912.t1 AT2G06850 57.143 231 91 2 58 281 5 234 9.47e-93 274
MS.gene79912.t1 AT4G28850 47.902 286 133 5 10 282 10 292 9.89e-93 276
MS.gene79912.t1 AT5G65730 48.561 278 127 6 11 278 20 291 1.27e-91 273
MS.gene79912.t1 AT4G37800 48.120 266 126 4 21 277 27 289 7.41e-89 266
MS.gene79912.t1 AT4G03210 52.381 231 100 3 60 281 31 260 9.40e-87 260
MS.gene79912.t1 AT1G11545 45.357 280 139 4 11 277 21 299 2.43e-86 260
MS.gene79912.t1 AT2G14620 48.707 232 111 1 59 282 18 249 1.90e-82 248
MS.gene79912.t1 AT2G14620 49.327 223 105 1 68 282 16 238 2.45e-80 243
MS.gene79912.t1 AT4G13090 40.893 291 151 4 7 278 1 289 3.45e-75 231
MS.gene79912.t1 AT3G25050 41.313 259 139 3 28 277 35 289 3.17e-74 229
MS.gene79912.t1 AT4G13080 45.420 262 124 7 28 278 39 292 1.65e-72 224
MS.gene79912.t1 AT2G36870 42.857 266 135 6 25 279 40 299 2.74e-63 201
MS.gene79912.t1 AT3G44990 40.590 271 142 8 18 277 31 293 6.52e-58 187
MS.gene79912.t1 AT1G14720 34.783 299 170 7 7 281 4 301 1.91e-53 177
MS.gene79912.t1 AT1G32170 34.471 293 163 8 8 277 7 293 4.11e-53 176
MS.gene79912.t1 AT1G10550 36.029 272 139 8 32 277 47 309 4.45e-53 175
MS.gene79912.t1 AT2G01850 31.773 299 179 6 7 281 4 301 2.96e-50 169
MS.gene79912.t1 AT4G18990 34.601 263 140 7 50 282 62 322 1.64e-44 154
MS.gene79912.t1 AT3G48580 34.008 247 145 7 35 277 41 273 3.08e-43 149
MS.gene79912.t1 AT4G18990 33.755 237 121 8 77 282 17 248 4.15e-37 133
MS.gene79912.t1 AT3G48580 32.143 224 135 6 58 277 4 214 1.50e-36 130
MS.gene79912.t1 AT2G36870 43.262 141 70 3 25 157 40 178 2.51e-30 112
MS.gene79912.t1 AT3G48580 30.952 252 126 10 35 277 41 253 7.58e-28 108

Find 69 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCATTGGTTGGTTCTT+TGG 0.220550 3.1:-65181463 None:intergenic
TTCTCATTGGTTGGTTCTTT+GGG 0.221209 3.1:-65181462 None:intergenic
TCGAAGAAAGAGTATTTATT+TGG 0.223648 3.1:+65180487 MS.gene79912:CDS
GCATTCTTGAAGATCCTTAT+AGG 0.241455 3.1:-65181418 None:intergenic
ATTAATATGGCTTCTTCTAT+TGG 0.241934 3.1:+65180292 None:intergenic
CACTCTGCAGGAATACCTTC+TGG 0.325804 3.1:-65181736 None:intergenic
CATTCTTGAAGATCCTTATA+GGG 0.350905 3.1:-65181417 None:intergenic
TAGTTGATAACATCCCTATA+AGG 0.361735 3.1:+65181404 MS.gene79912:CDS
GTCTCTGGAACGCTGATGAT+TGG 0.365899 3.1:+65181494 MS.gene79912:CDS
TATTACTTACATAATGTGTT+GGG 0.366572 3.1:-65181299 None:intergenic
TTGCGGTAGTAAGCTGTAAA+TGG 0.368145 3.1:-65181559 None:intergenic
ATGCAACTCAAACTCGTTGC+TGG 0.383246 3.1:+65180520 MS.gene79912:CDS
GAGAACAACAATTCTACCTT+TGG 0.383624 3.1:+65181230 MS.gene79912:CDS
ACCAAGACTTTGATCTAACT+TGG 0.393706 3.1:+65180383 MS.gene79912:CDS
ATTGGTTGGTTCTTTGGGAA+TGG 0.395735 3.1:-65181457 None:intergenic
AGACTTGAATAGATTCTCAT+TGG 0.409589 3.1:-65181475 None:intergenic
ATAAATACTCTTTCTTCGAT+TGG 0.413180 3.1:-65180483 None:intergenic
TTCAAGAATGCTGAATCAAT+TGG 0.430099 3.1:+65181430 MS.gene79912:CDS
TGAGAATCTATTCAAGTCTC+TGG 0.437244 3.1:+65181479 MS.gene79912:CDS
AGAGTAAGTGTGGAAGTTCT+TGG 0.438651 3.1:-65181263 None:intergenic
CTAGACAAAACCTCGGGCTC+TGG 0.447506 3.1:+65180457 MS.gene79912:CDS
TCCACACTTACTCTATCATC+TGG 0.453939 3.1:+65181272 MS.gene79912:CDS
GTAAGCTGTAAATGGTGCTT+TGG 0.464723 3.1:-65181551 None:intergenic
TTGAATAGATTCTCATTGGT+TGG 0.466553 3.1:-65181471 None:intergenic
ATATTACTTACATAATGTGT+TGG 0.469145 3.1:-65181300 None:intergenic
TCTCTGGAACGCTGATGATT+GGG 0.473167 3.1:+65181495 MS.gene79912:CDS
AGCAATGAGCTTGATGCATA+TGG 0.481427 3.1:+65181643 MS.gene79912:CDS
AGTCATGATAATTAGCTCCT+TGG 0.482305 3.1:+65180336 MS.gene79912:CDS
CTCGTTGCTGGAAACTCCGC+TGG 0.483628 3.1:+65180532 MS.gene79912:CDS
TCATTGATCTCTCAGAACCT+TGG 0.486786 3.1:-65181766 None:intergenic
CTTGGACGCTTGCACTCTGC+AGG 0.489897 3.1:-65181748 None:intergenic
AAGTGTGGAAGTTCTTGGTT+GGG 0.498153 3.1:-65181258 None:intergenic
CTGCAGAGTGCAAGCGTCCA+AGG 0.505272 3.1:+65181749 MS.gene79912:CDS
ACTCTGCAGGAATACCTTCT+GGG 0.505825 3.1:-65181735 None:intergenic
CCAAGACTTTGATCTAACTT+GGG 0.507796 3.1:+65180384 MS.gene79912:CDS
TTGGGCTACAAGAGGTGGTT+TGG 0.508778 3.1:+65181513 MS.gene79912:CDS
ACGTTTGTATGAAGAATGTA+AGG 0.516073 3.1:-65181184 None:intergenic
CACCGTGCTAAGATATTCAA+TGG 0.519496 3.1:+65180412 MS.gene79912:CDS
CCCAAGTTAGATCAAAGTCT+TGG 0.522663 3.1:-65180384 None:intergenic
GGCATGAACAATATGCTGAT+TGG 0.535335 3.1:+65180313 MS.gene79912:CDS
GAGTTCTTGGGAAATGTTAG+CGG 0.540045 3.1:+65181157 MS.gene79912:CDS
TAAGTGTGGAAGTTCTTGGT+TGG 0.544799 3.1:-65181259 None:intergenic
GTGGTTTGGTGAAAACTGAT+TGG 0.548484 3.1:+65181527 MS.gene79912:CDS
AAATCTATTTCATCGTGTGT+TGG 0.556214 3.1:-65181133 None:intergenic
ACTCGGTAGCTTTGAAATTG+CGG 0.568678 3.1:-65181576 None:intergenic
ATTACTTACATAATGTGTTG+GGG 0.569004 3.1:-65181298 None:intergenic
TGCAGAATCAGAGAAGGAAG+TGG 0.572405 3.1:-65181614 None:intergenic
CGATTGGAAGCCAGAGCCCG+AGG 0.573236 3.1:-65180467 None:intergenic
GATGATTGGGCTACAAGAGG+TGG 0.583367 3.1:+65181508 MS.gene79912:CDS
TCCAGATGATAGAGTAAGTG+TGG 0.584360 3.1:-65181273 None:intergenic
ATGGTAGAAGAAGATTGAGG+TGG 0.584786 3.1:+65181662 MS.gene79912:CDS
AGCAGAACATGTAGCTACCA+AGG 0.586171 3.1:-65180353 None:intergenic
TCTTGGTTGGGTCAAACCAA+AGG 0.586504 3.1:-65181246 None:intergenic
CTTTCTCTAGACAAAACCTC+GGG 0.590397 3.1:+65180451 MS.gene79912:CDS
TCTTTCTCTAGACAAAACCT+CGG 0.610000 3.1:+65180450 MS.gene79912:CDS
CAAGACTTTGATCTAACTTG+GGG 0.621178 3.1:+65180385 MS.gene79912:CDS
CATATGGTAGAAGAAGATTG+AGG 0.622675 3.1:+65181659 MS.gene79912:CDS
TTGCAATGCAGAATCAGAGA+AGG 0.624929 3.1:-65181620 None:intergenic
CACCATTGAATATCTTAGCA+CGG 0.635606 3.1:-65180414 None:intergenic
TGGTAGAAGAAGATTGAGGT+GGG 0.642709 3.1:+65181663 MS.gene79912:CDS
ATGGTGCAGTTATCATCACA+AGG 0.643718 3.1:+65181109 MS.gene79912:intron
GCTGATGATTGGGCTACAAG+AGG 0.647339 3.1:+65181505 MS.gene79912:CDS
GATCTTAAGCGATTCCCAGA+AGG 0.649786 3.1:+65181721 MS.gene79912:CDS
GGAAGAGATAGATGATAACT+CGG 0.649852 3.1:-65181593 None:intergenic
GTAAGCAGTGACGGTTCCAG+CGG 0.667054 3.1:-65180548 None:intergenic
ACGTACGTAGTAAGCAGTGA+CGG 0.675655 3.1:-65180557 None:intergenic
CGTGCTAAGATATTCAATGG+TGG 0.692895 3.1:+65180415 MS.gene79912:CDS
TGGTGCAGTTATCATCACAA+GGG 0.717771 3.1:+65181110 MS.gene79912:intron
CATTGAATATCTTAGCACGG+TGG 0.785980 3.1:-65180411 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTCTATCTAATTAATT+CGG + chr3.1:65180585-65180604 MS.gene79912:intron 10.0%
!! ATTAATTAGATAGAAAAAAG+AGG - chr3.1:65180584-65180603 None:intergenic 15.0%
!! GAATATAATATATAAATGTG+AGG - chr3.1:65180759-65180778 None:intergenic 15.0%
!! ATAATATATAAATGTGAGGA+AGG - chr3.1:65180755-65180774 None:intergenic 20.0%
!! ATATTACTTACATAATGTGT+TGG - chr3.1:65181303-65181322 None:intergenic 20.0%
!! TATTACTTACATAATGTGTT+GGG - chr3.1:65181302-65181321 None:intergenic 20.0%
!! TGAGATTAGAACATAAATAA+CGG - chr3.1:65180857-65180876 None:intergenic 20.0%
!!! TAGAAGTATATGATTTTCAA+TGG + chr3.1:65181090-65181109 MS.gene79912:intron 20.0%
! ATAAATACTCTTTCTTCGAT+TGG - chr3.1:65180486-65180505 None:intergenic 25.0%
! ATTACTTACATAATGTGTTG+GGG - chr3.1:65181301-65181320 None:intergenic 25.0%
! GTACAAAGTTACATATAACT+TGG - chr3.1:65180954-65180973 None:intergenic 25.0%
!! AAGTGTAGTTTTTGCAAAAA+TGG + chr3.1:65180670-65180689 MS.gene79912:intron 25.0%
!! TAACGGTTGTATTTTTCATA+TGG - chr3.1:65180840-65180859 None:intergenic 25.0%
!!! GAAATAGATTTTGAGTTCTT+GGG + chr3.1:65181145-65181164 MS.gene79912:CDS 25.0%
!!! TCGAAGAAAGAGTATTTATT+TGG + chr3.1:65180487-65180506 MS.gene79912:CDS 25.0%
!!! TGAAATAGATTTTGAGTTCT+TGG + chr3.1:65181144-65181163 MS.gene79912:CDS 25.0%
!!! TTACATATAACTTGGTTTGT+GGG - chr3.1:65180946-65180965 None:intergenic 25.0%
AAATCTATTTCATCGTGTGT+TGG - chr3.1:65181136-65181155 None:intergenic 30.0%
ACGTTTGTATGAAGAATGTA+AGG - chr3.1:65181187-65181206 None:intergenic 30.0%
AGACTTGAATAGATTCTCAT+TGG - chr3.1:65181478-65181497 None:intergenic 30.0%
CATTCTTGAAGATCCTTATA+GGG - chr3.1:65181420-65181439 None:intergenic 30.0%
TGTCGTGAATGCATAAATAA+CGG - chr3.1:65180902-65180921 None:intergenic 30.0%
TTCAAGAATGCTGAATCAAT+TGG + chr3.1:65181430-65181449 MS.gene79912:CDS 30.0%
TTGAATAGATTCTCATTGGT+TGG - chr3.1:65181474-65181493 None:intergenic 30.0%
TTGCAAAATCATTGTAACAC+TGG + chr3.1:65180633-65180652 MS.gene79912:intron 30.0%
TTTCAAAAGCAACTTTACCT+TGG + chr3.1:65180785-65180804 MS.gene79912:intron 30.0%
! GTTACATATAACTTGGTTTG+TGG - chr3.1:65180947-65180966 None:intergenic 30.0%
! TGTAGTTTTTGCAAAAATGG+TGG + chr3.1:65180673-65180692 MS.gene79912:intron 30.0%
!! AATTCGGTGTATGATTAGAT+TGG + chr3.1:65180601-65180620 MS.gene79912:intron 30.0%
!! TAGTTATACGAACTTGTTAG+CGG - chr3.1:65181372-65181391 None:intergenic 30.0%
!! TAGTTGATAACATCCCTATA+AGG + chr3.1:65181404-65181423 MS.gene79912:CDS 30.0%
!! TAGTTTGCTTCTTTGTATTG+CGG + chr3.1:65181055-65181074 MS.gene79912:intron 30.0%
ACCAAGACTTTGATCTAACT+TGG + chr3.1:65180383-65180402 MS.gene79912:CDS 35.0%
AGTCATGATAATTAGCTCCT+TGG + chr3.1:65180336-65180355 MS.gene79912:CDS 35.0%
CAAGACTTTGATCTAACTTG+GGG + chr3.1:65180385-65180404 MS.gene79912:CDS 35.0%
CACCATTGAATATCTTAGCA+CGG - chr3.1:65180417-65180436 None:intergenic 35.0%
CATATGGTAGAAGAAGATTG+AGG + chr3.1:65181659-65181678 MS.gene79912:CDS 35.0%
CATTTGATATCAAGAAGCCA+AGG - chr3.1:65180805-65180824 None:intergenic 35.0%
CCAAGACTTTGATCTAACTT+GGG + chr3.1:65180384-65180403 MS.gene79912:CDS 35.0%
GAGAACAACAATTCTACCTT+TGG + chr3.1:65181230-65181249 MS.gene79912:CDS 35.0%
GCATTCTTGAAGATCCTTAT+AGG - chr3.1:65181421-65181440 None:intergenic 35.0%
GGAAGAGATAGATGATAACT+CGG - chr3.1:65181596-65181615 None:intergenic 35.0%
TATATAAATGTGAGGAAGGC+AGG - chr3.1:65180751-65180770 None:intergenic 35.0%
TCTTTCTCTAGACAAAACCT+CGG + chr3.1:65180450-65180469 MS.gene79912:CDS 35.0%
TGAGAATCTATTCAAGTCTC+TGG + chr3.1:65181479-65181498 MS.gene79912:CDS 35.0%
! AGTTTTTGCAAAAATGGTGG+TGG + chr3.1:65180676-65180695 MS.gene79912:intron 35.0%
! ATTCTCATTGGTTGGTTCTT+TGG - chr3.1:65181466-65181485 None:intergenic 35.0%
! CATACAAACGTGTTTTCTCA+AGG + chr3.1:65181196-65181215 MS.gene79912:CDS 35.0%
! TTCTCATTGGTTGGTTCTTT+GGG - chr3.1:65181465-65181484 None:intergenic 35.0%
!! TATAACTTGGTTTGTGGGTT+TGG - chr3.1:65180941-65180960 None:intergenic 35.0%
AAGTGTGGAAGTTCTTGGTT+GGG - chr3.1:65181261-65181280 None:intergenic 40.0%
AGAGTAAGTGTGGAAGTTCT+TGG - chr3.1:65181266-65181285 None:intergenic 40.0%
AGCAATGAGCTTGATGCATA+TGG + chr3.1:65181643-65181662 MS.gene79912:CDS 40.0%
ATGGTAGAAGAAGATTGAGG+TGG + chr3.1:65181662-65181681 MS.gene79912:CDS 40.0%
ATGGTGCAGTTATCATCACA+AGG + chr3.1:65181109-65181128 MS.gene79912:intron 40.0%
CACCGTGCTAAGATATTCAA+TGG + chr3.1:65180412-65180431 MS.gene79912:CDS 40.0%
CATTGAATATCTTAGCACGG+TGG - chr3.1:65180414-65180433 None:intergenic 40.0%
CCCAAGTTAGATCAAAGTCT+TGG - chr3.1:65180387-65180406 None:intergenic 40.0%
CGTGCTAAGATATTCAATGG+TGG + chr3.1:65180415-65180434 MS.gene79912:CDS 40.0%
CTTTCTCTAGACAAAACCTC+GGG + chr3.1:65180451-65180470 MS.gene79912:CDS 40.0%
GAGTTCTTGGGAAATGTTAG+CGG + chr3.1:65181157-65181176 MS.gene79912:CDS 40.0%
GGCATGAACAATATGCTGAT+TGG + chr3.1:65180313-65180332 MS.gene79912:CDS 40.0%
GTAAGCTGTAAATGGTGCTT+TGG - chr3.1:65181554-65181573 None:intergenic 40.0%
TAAGTGTGGAAGTTCTTGGT+TGG - chr3.1:65181262-65181281 None:intergenic 40.0%
TCCACACTTACTCTATCATC+TGG + chr3.1:65181272-65181291 MS.gene79912:CDS 40.0%
TCCAGATGATAGAGTAAGTG+TGG - chr3.1:65181276-65181295 None:intergenic 40.0%
TGGTAGAAGAAGATTGAGGT+GGG + chr3.1:65181663-65181682 MS.gene79912:CDS 40.0%
TGGTGCAGTTATCATCACAA+GGG + chr3.1:65181110-65181129 MS.gene79912:intron 40.0%
TTGCAATGCAGAATCAGAGA+AGG - chr3.1:65181623-65181642 None:intergenic 40.0%
TTGCGGTAGTAAGCTGTAAA+TGG - chr3.1:65181562-65181581 None:intergenic 40.0%
! AACGTGTTTTCTCAAGGCAA+AGG + chr3.1:65181202-65181221 MS.gene79912:CDS 40.0%
! ATTGGTTGGTTCTTTGGGAA+TGG - chr3.1:65181460-65181479 None:intergenic 40.0%
!! ACTCGGTAGCTTTGAAATTG+CGG - chr3.1:65181579-65181598 None:intergenic 40.0%
!! GTGGTTTGGTGAAAACTGAT+TGG + chr3.1:65181527-65181546 MS.gene79912:CDS 40.0%
ACGTACGTAGTAAGCAGTGA+CGG - chr3.1:65180560-65180579 None:intergenic 45.0%
ACTCTGCAGGAATACCTTCT+GGG - chr3.1:65181738-65181757 None:intergenic 45.0%
AGCAGAACATGTAGCTACCA+AGG - chr3.1:65180356-65180375 None:intergenic 45.0%
ATGCAACTCAAACTCGTTGC+TGG + chr3.1:65180520-65180539 MS.gene79912:CDS 45.0%
GATCTTAAGCGATTCCCAGA+AGG + chr3.1:65181721-65181740 MS.gene79912:CDS 45.0%
TCTTGGTTGGGTCAAACCAA+AGG - chr3.1:65181249-65181268 None:intergenic 45.0%
TGCAGAATCAGAGAAGGAAG+TGG - chr3.1:65181617-65181636 None:intergenic 45.0%
!! TCTCTGGAACGCTGATGATT+GGG + chr3.1:65181495-65181514 MS.gene79912:CDS 45.0%
CACTCTGCAGGAATACCTTC+TGG - chr3.1:65181739-65181758 None:intergenic 50.0%
GATGATTGGGCTACAAGAGG+TGG + chr3.1:65181508-65181527 MS.gene79912:CDS 50.0%
GCTGATGATTGGGCTACAAG+AGG + chr3.1:65181505-65181524 MS.gene79912:CDS 50.0%
TTGGGCTACAAGAGGTGGTT+TGG + chr3.1:65181513-65181532 MS.gene79912:CDS 50.0%
!! CTTGGTTTGTGGGTTTGGTG+CGG - chr3.1:65180936-65180955 None:intergenic 50.0%
!! GTCTCTGGAACGCTGATGAT+TGG + chr3.1:65181494-65181513 MS.gene79912:CDS 50.0%
CTAGACAAAACCTCGGGCTC+TGG + chr3.1:65180457-65180476 MS.gene79912:CDS 55.0%
GTAAGCAGTGACGGTTCCAG+CGG - chr3.1:65180551-65180570 None:intergenic 55.0%
CTCGTTGCTGGAAACTCCGC+TGG + chr3.1:65180532-65180551 MS.gene79912:CDS 60.0%
CTGCAGAGTGCAAGCGTCCA+AGG + chr3.1:65181749-65181768 MS.gene79912:CDS 60.0%
CTTGGACGCTTGCACTCTGC+AGG - chr3.1:65181751-65181770 None:intergenic 60.0%
CGATTGGAAGCCAGAGCCCG+AGG - chr3.1:65180470-65180489 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 65180298 65181777 65180298 ID=MS.gene79912
chr3.1 mRNA 65180298 65181777 65180298 ID=MS.gene79912.t1;Parent=MS.gene79912
chr3.1 exon 65180298 65180573 65180298 ID=MS.gene79912.t1.exon1;Parent=MS.gene79912.t1
chr3.1 CDS 65180298 65180573 65180298 ID=cds.MS.gene79912.t1;Parent=MS.gene79912.t1
chr3.1 exon 65181118 65181311 65181118 ID=MS.gene79912.t1.exon2;Parent=MS.gene79912.t1
chr3.1 CDS 65181118 65181311 65181118 ID=cds.MS.gene79912.t1;Parent=MS.gene79912.t1
chr3.1 exon 65181399 65181777 65181399 ID=MS.gene79912.t1.exon3;Parent=MS.gene79912.t1
chr3.1 CDS 65181399 65181777 65181399 ID=cds.MS.gene79912.t1;Parent=MS.gene79912.t1
Gene Sequence

>MS.gene79912

ATGGCTTCTTCTATTGGCATGAACAATATGCTGATTGGAGTCATGATAATTAGCTCCTTGGTAGCTACATGTTCTGCTAACTTCAACCAAGACTTTGATCTAACTTGGGGCGACCACCGTGCTAAGATATTCAATGGTGGTCAACTTCTATCTCTTTCTCTAGACAAAACCTCGGGCTCTGGCTTCCAATCGAAGAAAGAGTATTTATTTGGTAGAATTGATATGCAACTCAAACTCGTTGCTGGAAACTCCGCTGGAACCGTCACTGCTTACTACGTACGTACCTCTTTTTTCTATCTAATTAATTCGGTGTATGATTAGATTGGTTGTGTGTTTTGCAAAATCATTGTAACACTGGTTTCTGAAACTATGAAGTGTAGTTTTTGCAAAAATGGTGGTGGCTCACAATGATTTTCACAAACGTATAAATGCATATAGTTTGATTCTTTTCCTGCCTTCCTCACATTTATATATTATATTCTCTCTTTTTCAAAAGCAACTTTACCTTGGCTTCTTGATATCAAATGCATTAATTTTCTCCATATGAAAAATACAACCGTTATTTATGTTCTAATCTCATTAAATATAACTGTTATTTGAACCGTTATTTATGCATTCACGACATATAAACTCTACCGCACCAAACCCACAAACCAAGTTATATGTAACTTTGTACTAGTATACGTAATTATTTTTTCAATTTTTTTCTATATACAAACACAATGAATTTCACGAGCAATTTTTTGTGTTCTGTTTCTAGTTTGCTTCTTTGTATTGCGGTGTTGTCAATAATAGAAGTATATGATTTTCAATGGTGCAGTTATCATCACAAGGGCCAACACACGATGAAATAGATTTTGAGTTCTTGGGAAATGTTAGCGGTGATCCTTACATTCTTCATACAAACGTGTTTTCTCAAGGCAAAGGAAACAGAGAACAACAATTCTACCTTTGGTTTGACCCAACCAAGAACTTCCACACTTACTCTATCATCTGGAAGCCCCAACACATTATGTAAGTAATATATATTTAAGTTTGATCAAACAGCTCAATTAAGCGCTTATAAAAAAACCGCTAACAAGTTCGTATAACTAAATGCAGATTTTTAGTTGATAACATCCCTATAAGGATCTTCAAGAATGCTGAATCAATTGGTATTCCATTCCCAAAGAACCAACCAATGAGAATCTATTCAAGTCTCTGGAACGCTGATGATTGGGCTACAAGAGGTGGTTTGGTGAAAACTGATTGGTCCAAAGCACCATTTACAGCTTACTACCGCAATTTCAAAGCTACCGAGTTATCATCTATCTCTTCCACTTCCTTCTCTGATTCTGCATTGCAAAGCAATGAGCTTGATGCATATGGTAGAAGAAGATTGAGGTGGGTTCAGAAGTACTTCATGATCTATAACTACTGCAACGATCTTAAGCGATTCCCAGAAGGTATTCCTGCAGAGTGCAAGCGTCCAAGGTTCTGA
Protein sequence

>MS.gene79912.t1

MASSIGMNNMLIGVMIISSLVATCSANFNQDFDLTWGDHRAKIFNGGQLLSLSLDKTSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFSQGKGNREQQFYLWFDPTKNFHTYSIIWKPQHIIFLVDNIPIRIFKNAESIGIPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATELSSISSTSFSDSALQSNELDAYGRRRLRWVQKYFMIYNYCNDLKRFPEGIPAECKRPRF