Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79924.t1 | XP_013444778.1 | 98.7 | 149 | 2 | 0 | 1 | 149 | 1 | 149 | 7.20E-52 | 213.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79924.t1 | O03982 | 63.8 | 177 | 36 | 2 | 1 | 149 | 1 | 177 | 4.5e-34 | 145.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79924.t1 | A0A072TPN8 | 98.7 | 149 | 2 | 0 | 1 | 149 | 1 | 149 | 5.2e-52 | 213.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056833 | MS.gene79924 | 0.804955 | 1.69E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene79924 | 0.839137 | 1.90E-57 | -1.69E-46 |
| MS.gene060322 | MS.gene79924 | 0.805082 | 1.58E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene79924 | 0.819504 | 1.12E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene79924 | 0.8129 | 3.36E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79924.t1 | MTR_8g028615 | 98.658 | 149 | 2 | 0 | 1 | 149 | 1 | 149 | 2.41e-104 | 295 |
| MS.gene79924.t1 | MTR_8g098915 | 59.060 | 149 | 39 | 1 | 1 | 149 | 1 | 127 | 1.86e-54 | 167 |
| MS.gene79924.t1 | MTR_7g079110 | 58.857 | 175 | 43 | 2 | 1 | 149 | 1 | 172 | 6.94e-49 | 155 |
| MS.gene79924.t1 | MTR_8g098915 | 56.154 | 130 | 35 | 1 | 20 | 149 | 1 | 108 | 4.59e-43 | 138 |
| MS.gene79924.t1 | MTR_6g049280 | 43.624 | 149 | 59 | 2 | 1 | 149 | 1 | 124 | 1.41e-28 | 102 |
| MS.gene79924.t1 | MTR_6g049280 | 42.953 | 149 | 60 | 2 | 1 | 149 | 31 | 154 | 6.43e-28 | 101 |
| MS.gene79924.t1 | MTR_6g051690 | 40.940 | 149 | 66 | 2 | 1 | 149 | 1 | 127 | 1.39e-27 | 99.8 |
| MS.gene79924.t1 | MTR_6g051680 | 64.286 | 70 | 25 | 0 | 1 | 70 | 1 | 70 | 4.56e-27 | 97.8 |
| MS.gene79924.t1 | MTR_6g049320 | 42.953 | 149 | 60 | 2 | 1 | 149 | 1 | 124 | 5.07e-27 | 98.2 |
| MS.gene79924.t1 | MTR_6g049320 | 42.282 | 149 | 61 | 2 | 1 | 149 | 31 | 154 | 1.90e-26 | 97.8 |
| MS.gene79924.t1 | MTR_1g099640 | 43.421 | 152 | 61 | 4 | 1 | 149 | 1 | 130 | 3.54e-26 | 96.3 |
| MS.gene79924.t1 | MTR_1g099800 | 43.421 | 152 | 65 | 2 | 1 | 148 | 1 | 135 | 5.90e-26 | 95.9 |
| MS.gene79924.t1 | MTR_1g099810 | 41.935 | 155 | 66 | 4 | 1 | 148 | 1 | 138 | 4.22e-24 | 91.3 |
| MS.gene79924.t1 | MTR_6g049260 | 57.143 | 77 | 32 | 1 | 1 | 77 | 1 | 76 | 5.95e-24 | 90.1 |
| MS.gene79924.t1 | MTR_7g451210 | 54.667 | 75 | 34 | 0 | 1 | 75 | 1 | 75 | 7.56e-23 | 87.0 |
| MS.gene79924.t1 | MTR_1g099815 | 41.026 | 156 | 59 | 4 | 1 | 148 | 1 | 131 | 1.46e-22 | 87.0 |
| MS.gene79924.t1 | MTR_3g434960 | 52.439 | 82 | 38 | 1 | 1 | 82 | 1 | 81 | 2.32e-22 | 85.9 |
| MS.gene79924.t1 | MTR_3g434890 | 52.439 | 82 | 38 | 1 | 1 | 82 | 1 | 81 | 2.42e-22 | 85.9 |
| MS.gene79924.t1 | MTR_1g102240 | 35.897 | 156 | 67 | 3 | 1 | 148 | 1 | 131 | 3.93e-21 | 83.2 |
| MS.gene79924.t1 | MTR_1173s0010 | 50.667 | 75 | 37 | 0 | 1 | 75 | 1 | 75 | 4.51e-21 | 82.4 |
| MS.gene79924.t1 | MTR_0795s0020 | 40.132 | 152 | 63 | 3 | 1 | 149 | 1 | 127 | 1.47e-20 | 81.6 |
| MS.gene79924.t1 | MTR_7g451200 | 50.633 | 79 | 38 | 1 | 1 | 79 | 1 | 78 | 1.50e-20 | 81.3 |
| MS.gene79924.t1 | MTR_3g435000 | 52.703 | 74 | 34 | 1 | 6 | 79 | 10 | 82 | 1.53e-20 | 81.3 |
| MS.gene79924.t1 | MTR_1g099810 | 39.706 | 136 | 58 | 4 | 20 | 148 | 1 | 119 | 2.88e-16 | 70.5 |
| MS.gene79924.t1 | MTR_3g434920 | 52.727 | 55 | 25 | 1 | 28 | 82 | 2 | 55 | 4.43e-12 | 58.5 |
| MS.gene79924.t1 | MTR_5g020960 | 36.170 | 141 | 81 | 4 | 1 | 137 | 2 | 137 | 3.89e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79924.t1 | AT1G01490 | 55.932 | 177 | 50 | 3 | 1 | 149 | 1 | 177 | 3.09e-46 | 149 |
| MS.gene79924.t1 | AT1G01490 | 55.932 | 177 | 50 | 3 | 1 | 149 | 1 | 177 | 3.09e-46 | 149 |
| MS.gene79924.t1 | AT1G01490 | 55.429 | 175 | 50 | 3 | 3 | 149 | 30 | 204 | 4.17e-45 | 146 |
| MS.gene79924.t1 | AT1G01490 | 50.694 | 144 | 43 | 3 | 34 | 149 | 1 | 144 | 2.51e-26 | 97.1 |
| MS.gene79924.t1 | AT5G52760 | 49.398 | 83 | 41 | 1 | 2 | 84 | 4 | 85 | 1.91e-17 | 73.9 |
| MS.gene79924.t1 | AT5G52740 | 49.296 | 71 | 34 | 1 | 1 | 71 | 1 | 69 | 1.10e-15 | 68.9 |
| MS.gene79924.t1 | AT5G52750 | 48.649 | 74 | 38 | 0 | 3 | 76 | 5 | 78 | 6.33e-11 | 57.0 |
Find 31 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACAGTCTCAACACTTTC+AGG | 0.167612 | 8.1:-72998340 | MS.gene79924:intron |
| AATTTGCTCACCACATTTAC+TGG | 0.185815 | 8.1:+72996500 | None:intergenic |
| TTCCTAATCCATTCTTGAAT+AGG | 0.370743 | 8.1:+72996302 | None:intergenic |
| TGGTAATGTGTTGTCATATA+GGG | 0.371705 | 8.1:+72996263 | None:intergenic |
| AAAGAAAGAAGAAGGAAAGA+AGG | 0.374548 | 8.1:-72996393 | MS.gene79924:CDS |
| CTCTTTCATGTCCATTGAGA+TGG | 0.375765 | 8.1:+72996553 | None:intergenic |
| TGAGCAAATTAAGAAAATTC+TGG | 0.381644 | 8.1:-72996487 | MS.gene79924:CDS |
| ATGGTAATGTGTTGTCATAT+AGG | 0.413083 | 8.1:+72996262 | None:intergenic |
| GAGAAGAAACTGACAGTGAT+AGG | 0.416746 | 8.1:-72996533 | MS.gene79924:CDS |
| ATCCTATTCAAGAATGGATT+AGG | 0.419464 | 8.1:-72996304 | MS.gene79924:CDS |
| GATGGAGAAAAGAAAGAAGA+AGG | 0.445221 | 8.1:-72996401 | MS.gene79924:CDS |
| AAAGAAGAAGCCAAGAAAGA+TGG | 0.450668 | 8.1:-72996419 | MS.gene79924:CDS |
| GAAGAGGGAAAGAAAGAAGA+AGG | 0.456920 | 8.1:-72996371 | MS.gene79924:CDS |
| GAAGAAGGAAAGAAGGAAGA+GGG | 0.465238 | 8.1:-72996386 | MS.gene79924:CDS |
| TAACAAATGACACATGCATT+GGG | 0.466318 | 8.1:+72996218 | None:intergenic |
| AGAAGAAGGAAAGAAGGAAG+AGG | 0.473715 | 8.1:-72996387 | MS.gene79924:CDS |
| AGAAGAAGAGAAGAAGAAAG+AGG | 0.494396 | 8.1:-72996342 | MS.gene79924:CDS |
| TTAACAAATGACACATGCAT+TGG | 0.497832 | 8.1:+72996217 | None:intergenic |
| CACGAGATCCTATTCAAGAA+TGG | 0.515760 | 8.1:-72996310 | MS.gene79924:CDS |
| TGAATAGGATCTCGTGGTGG+GGG | 0.540207 | 8.1:+72996317 | None:intergenic |
| CTTGAATAGGATCTCGTGGT+GGG | 0.546099 | 8.1:+72996315 | None:intergenic |
| AGGGATTGATGCCATCTCAA+TGG | 0.552997 | 8.1:-72996564 | MS.gene79924:CDS |
| TCTCTTCCATGCTTTGAACA+TGG | 0.559376 | 8.1:+72996243 | None:intergenic |
| TTGAATAGGATCTCGTGGTG+GGG | 0.587621 | 8.1:+72996316 | None:intergenic |
| TGATGACAAGGACAAGAAGA+AGG | 0.590063 | 8.1:-72998368 | MS.gene79924:CDS |
| AACAGTAGATCCAGTAAATG+TGG | 0.591652 | 8.1:-72996510 | MS.gene79924:CDS |
| GTTAGATTTGCATGATGACA+AGG | 0.607821 | 8.1:-72998380 | MS.gene79924:CDS |
| ACATTACCATGTTCAAAGCA+TGG | 0.617021 | 8.1:-72996249 | MS.gene79924:CDS |
| CATTCTTGAATAGGATCTCG+TGG | 0.630162 | 8.1:+72996311 | None:intergenic |
| TCTTGAATAGGATCTCGTGG+TGG | 0.630703 | 8.1:+72996314 | None:intergenic |
| CATACAGAAATAGTAGCAGT+AGG | 0.633124 | 8.1:-72996464 | MS.gene79924:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTATTGTTCATTTT+GGG | - | chr8.1:72996707-72996726 | MS.gene79924:intron | 10.0% |
| !!! | ATTTATTCTTTTTATAGAAA+TGG | - | chr8.1:72996271-72996290 | MS.gene79924:CDS | 10.0% |
| !!! | TCAATAGTTTTTTTTTAATA+AGG | + | chr8.1:72996946-72996965 | None:intergenic | 10.0% |
| !!! | TTTTATACTAATATATTTTG+TGG | - | chr8.1:72996886-72996905 | MS.gene79924:intron | 10.0% |
| !!! | TTTTGATGAATTTTAAAATA+GGG | - | chr8.1:72998349-72998368 | MS.gene79924:CDS | 10.0% |
| !!! | TTTTTGATGAATTTTAAAAT+AGG | - | chr8.1:72998348-72998367 | MS.gene79924:CDS | 10.0% |
| !! | AAATATTGGGTATAAAAATA+TGG | + | chr8.1:72997432-72997451 | None:intergenic | 15.0% |
| !! | AATATTGGGTATAAAAATAT+GGG | + | chr8.1:72997431-72997450 | None:intergenic | 15.0% |
| !! | ATGAAAAGAAAAATAAATAG+AGG | + | chr8.1:72996359-72996378 | None:intergenic | 15.0% |
| !! | CAACAAATAAAAAAATTTGA+AGG | - | chr8.1:72998149-72998168 | MS.gene79924:intron | 15.0% |
| !! | TCATTATAAATCATATATGT+AGG | - | chr8.1:72997721-72997740 | MS.gene79924:intron | 15.0% |
| !! | TGAACAATAAAATAATGATT+TGG | + | chr8.1:72996703-72996722 | None:intergenic | 15.0% |
| !! | TTTCTCAAAAACAAAATATT+GGG | + | chr8.1:72997445-72997464 | None:intergenic | 15.0% |
| !!! | AAATTTTCTTCTAATGAATT+AGG | - | chr8.1:72996569-72996588 | MS.gene79924:intron | 15.0% |
| !!! | AATTTTCTTCTAATGAATTA+GGG | - | chr8.1:72996570-72996589 | MS.gene79924:intron | 15.0% |
| !!! | CATTATTTTATTGTTCATTT+TGG | - | chr8.1:72996706-72996725 | MS.gene79924:intron | 15.0% |
| !!! | TTTTAGGCATAAATATTTTT+AGG | - | chr8.1:72997239-72997258 | MS.gene79924:intron | 15.0% |
| !!! | TTTTCTCAAAAACAAAATAT+TGG | + | chr8.1:72997446-72997465 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAATAAGGAATGA+AGG | + | chr8.1:72996938-72996957 | None:intergenic | 15.0% |
| !! | AAAAGAAAAATAAATAGAGG+AGG | + | chr8.1:72996356-72996375 | None:intergenic | 20.0% |
| !! | AAGTTCTTGAAGAATAAAAA+AGG | + | chr8.1:72996329-72996348 | None:intergenic | 20.0% |
| !! | AGACAAAGAGTTATATTATT+TGG | + | chr8.1:72997656-72997675 | None:intergenic | 20.0% |
| !! | ATAATATAACTCTTTGTCTT+TGG | - | chr8.1:72997657-72997676 | MS.gene79924:intron | 20.0% |
| !! | ATATGATATACTTAAGATTG+TGG | + | chr8.1:72996818-72996837 | None:intergenic | 20.0% |
| !! | ATTTAACAAAGCAAAATGTT+TGG | - | chr8.1:72997748-72997767 | MS.gene79924:intron | 20.0% |
| !! | TATCAAAACAAGAATTATCT+TGG | + | chr8.1:72997991-72998010 | None:intergenic | 20.0% |
| !! | TTTGTATTTCATATGACATA+GGG | + | chr8.1:72997578-72997597 | None:intergenic | 20.0% |
| !!! | AATTTTGCACAACATTTTAA+AGG | - | chr8.1:72998115-72998134 | MS.gene79924:intron | 20.0% |
| !!! | AGACTATTCAAGTTTTTATT+AGG | - | chr8.1:72998198-72998217 | MS.gene79924:intron | 20.0% |
| !!! | AGATAATTCTTGTTTTGATA+AGG | - | chr8.1:72997991-72998010 | MS.gene79924:intron | 20.0% |
| !!! | TAATCTTTTTTATTTTGGGT+TGG | - | chr8.1:72996523-72996542 | MS.gene79924:CDS | 20.0% |
| !!! | TAGATTTTTAAATCAATGGA+AGG | + | chr8.1:72997298-72997317 | None:intergenic | 20.0% |
| !!! | TGTTGTAATTTTGTTAGAAT+TGG | + | chr8.1:72997113-72997132 | None:intergenic | 20.0% |
| !!! | TTCCATTGATTTAAAAATCT+AGG | - | chr8.1:72997297-72997316 | MS.gene79924:intron | 20.0% |
| !!! | TTCCTAGATTTTTAAATCAA+TGG | + | chr8.1:72997302-72997321 | None:intergenic | 20.0% |
| ! | AAATTTGAGTAATGTGAAAG+AGG | + | chr8.1:72998035-72998054 | None:intergenic | 25.0% |
| ! | CGTCAAAATGTATGTATATA+CGG | + | chr8.1:72997494-72997513 | None:intergenic | 25.0% |
| ! | GTTTGTATTTCATATGACAT+AGG | + | chr8.1:72997579-72997598 | None:intergenic | 25.0% |
| ! | TGAATGATCTATACATGTTT+CGG | + | chr8.1:72998325-72998344 | None:intergenic | 25.0% |
| ! | TGAGCAAATTAAGAAAATTC+TGG | - | chr8.1:72998528-72998547 | MS.gene79924:intron | 25.0% |
| !! | ATGACTTGCATAATAATTTG+TGG | - | chr8.1:72997915-72997934 | MS.gene79924:intron | 25.0% |
| !!! | AGGCATGAAACTTTATTTTT+AGG | - | chr8.1:72997223-72997242 | MS.gene79924:intron | 25.0% |
| !!! | GATGAATTTTAAAATAGGGA+GGG | - | chr8.1:72998353-72998372 | MS.gene79924:CDS | 25.0% |
| !!! | GGAAAATGTTTTAAAAGTCT+AGG | - | chr8.1:72997350-72997369 | MS.gene79924:intron | 25.0% |
| !!! | GTAATGTTTTAAAAGTGTGT+AGG | - | chr8.1:72997329-72997348 | MS.gene79924:intron | 25.0% |
| !!! | TGATGAATTTTAAAATAGGG+AGG | - | chr8.1:72998352-72998371 | MS.gene79924:CDS | 25.0% |
| !!! | TGTTTTTGAGAAAAGTTTTG+TGG | - | chr8.1:72997452-72997471 | MS.gene79924:intron | 25.0% |
| !!! | TTTGGTTGGTAGAAAAATAT+TGG | - | chr8.1:72996473-72996492 | MS.gene79924:CDS | 25.0% |
| AAAAATATGGGTCATGCTAA+GGG | + | chr8.1:72997419-72997438 | None:intergenic | 30.0% | |
| AAACAAGAATTATCTTGGCT+AGG | + | chr8.1:72997986-72998005 | None:intergenic | 30.0% | |
| AAAGAAAGAAGAAGGAAAGA+AGG | - | chr8.1:72998622-72998641 | MS.gene79924:intron | 30.0% | |
| AAATGTTAGCAATGTTTGGT+AGG | - | chr8.1:72998222-72998241 | MS.gene79924:intron | 30.0% | |
| AAGGATTTCTCATGTGATTA+GGG | - | chr8.1:72998432-72998451 | MS.gene79924:intron | 30.0% | |
| AAGTATAACCAAAGAATCAG+AGG | + | chr8.1:72997005-72997024 | None:intergenic | 30.0% | |
| AATCCAGTTTCAGTCAAAAT+AGG | - | chr8.1:72998379-72998398 | MS.gene79924:CDS | 30.0% | |
| ACGTTTATATGGTGTCTATA+TGG | + | chr8.1:72997517-72997536 | None:intergenic | 30.0% | |
| ACTTTATCTTATCTCTCTCA+AGG | + | chr8.1:72997788-72997807 | None:intergenic | 30.0% | |
| ATAGACACCATATAAACGTA+CGG | - | chr8.1:72997518-72997537 | MS.gene79924:intron | 30.0% | |
| ATCCAGTTTCAGTCAAAATA+GGG | - | chr8.1:72998380-72998399 | MS.gene79924:CDS | 30.0% | |
| CAAAACAAGGATACTAATGA+AGG | + | chr8.1:72996457-72996476 | None:intergenic | 30.0% | |
| CATGAGAAATCCTTGATATT+AGG | + | chr8.1:72998426-72998445 | None:intergenic | 30.0% | |
| CTGATTCTTTGGTTATACTT+CGG | - | chr8.1:72997005-72997024 | MS.gene79924:intron | 30.0% | |
| CTGCAATGAAAATCATAAAC+TGG | + | chr8.1:72996601-72996620 | None:intergenic | 30.0% | |
| TAAAAATATGGGTCATGCTA+AGG | + | chr8.1:72997420-72997439 | None:intergenic | 30.0% | |
| TAACAAATGACACATGCATT+GGG | + | chr8.1:72998800-72998819 | None:intergenic | 30.0% | |
| TAACTTCAATGATCGAACTT+TGG | - | chr8.1:72997155-72997174 | MS.gene79924:intron | 30.0% | |
| TATAACTCTTTGTCTTTGGA+TGG | - | chr8.1:72997661-72997680 | MS.gene79924:intron | 30.0% | |
| TCAATAGTCAAAGTGATAAG+AGG | - | chr8.1:72997072-72997091 | MS.gene79924:intron | 30.0% | |
| TCATTTCGAAATGATTCACT+AGG | - | chr8.1:72997695-72997714 | MS.gene79924:intron | 30.0% | |
| TCCATTTAAGCCTAATATCA+AGG | - | chr8.1:72998413-72998432 | MS.gene79924:intron | 30.0% | |
| TCCTTGATATTAGGCTTAAA+TGG | + | chr8.1:72998417-72998436 | None:intergenic | 30.0% | |
| TCTCCTTATGTAAAGATCTA+GGG | - | chr8.1:72996406-72996425 | MS.gene79924:CDS | 30.0% | |
| TTAACAAATGACACATGCAT+TGG | + | chr8.1:72998801-72998820 | None:intergenic | 30.0% | |
| TTCCTAATCCATTCTTGAAT+AGG | + | chr8.1:72998716-72998735 | None:intergenic | 30.0% | |
| TTTGATAAGGTTGTTCTGAT+TGG | - | chr8.1:72998004-72998023 | MS.gene79924:intron | 30.0% | |
| ! | ATCCTATTCAAGAATGGATT+AGG | - | chr8.1:72998711-72998730 | MS.gene79924:intron | 30.0% |
| ! | ATGGTAATGTGTTGTCATAT+AGG | + | chr8.1:72998756-72998775 | None:intergenic | 30.0% |
| ! | TGCATAATAATTTGTGGCTA+TGG | - | chr8.1:72997921-72997940 | MS.gene79924:intron | 30.0% |
| ! | TGGTAATGTGTTGTCATATA+GGG | + | chr8.1:72998755-72998774 | None:intergenic | 30.0% |
| ! | TTTCTTTTCTCCATCTTTCT+TGG | + | chr8.1:72998609-72998628 | None:intergenic | 30.0% |
| ! | TTTTTCTACCAACCAAAACA+AGG | + | chr8.1:72996470-72996489 | None:intergenic | 30.0% |
| !! | CTTCATTAGTATCCTTGTTT+TGG | - | chr8.1:72996455-72996474 | MS.gene79924:CDS | 30.0% |
| !!! | ATTAGTATCCTTGTTTTGGT+TGG | - | chr8.1:72996459-72996478 | MS.gene79924:CDS | 30.0% |
| !!! | ATTTTGTTTGGTGTTGGATA+TGG | - | chr8.1:72997613-72997632 | MS.gene79924:intron | 30.0% |
| AAAACAGTCTCAACACTTTC+AGG | - | chr8.1:72996675-72996694 | MS.gene79924:intron | 35.0% | |
| AAAGAAGAAGCCAAGAAAGA+TGG | - | chr8.1:72998596-72998615 | MS.gene79924:intron | 35.0% | |
| AACAGTAGATCCAGTAAATG+TGG | - | chr8.1:72998505-72998524 | MS.gene79924:intron | 35.0% | |
| ACATTACCATGTTCAAAGCA+TGG | - | chr8.1:72998766-72998785 | MS.gene79924:intron | 35.0% | |
| AGAAGAAGAGAAGAAGAAAG+AGG | - | chr8.1:72998673-72998692 | MS.gene79924:intron | 35.0% | |
| AGGCAAATGTTAGCAATGTT+TGG | - | chr8.1:72998218-72998237 | MS.gene79924:intron | 35.0% | |
| ATTCGAACCGTACGTTTATA+TGG | + | chr8.1:72997528-72997547 | None:intergenic | 35.0% | |
| CAAGGATTTCTCATGTGATT+AGG | - | chr8.1:72998431-72998450 | MS.gene79924:intron | 35.0% | |
| CATACAGAAATAGTAGCAGT+AGG | - | chr8.1:72998551-72998570 | MS.gene79924:intron | 35.0% | |
| CTACCCTAGATCTTTACATA+AGG | + | chr8.1:72996412-72996431 | None:intergenic | 35.0% | |
| CTCTCCTTATGTAAAGATCT+AGG | - | chr8.1:72996405-72996424 | MS.gene79924:CDS | 35.0% | |
| GATGGAGAAAAGAAAGAAGA+AGG | - | chr8.1:72998614-72998633 | MS.gene79924:intron | 35.0% | |
| GTCTTTGGATGGTTTGAATT+TGG | - | chr8.1:72997672-72997691 | MS.gene79924:intron | 35.0% | |
| GTTAGATTTGCATGATGACA+AGG | - | chr8.1:72996635-72996654 | MS.gene79924:intron | 35.0% | |
| TAAGGTTGTTCTGATTGGAT+TGG | - | chr8.1:72998009-72998028 | MS.gene79924:intron | 35.0% | |
| TCCAGTTTCAGTCAAAATAG+GGG | - | chr8.1:72998381-72998400 | MS.gene79924:CDS | 35.0% | |
| TTACATAAGGAGAGAAACAG+AGG | + | chr8.1:72996399-72996418 | None:intergenic | 35.0% | |
| ! | AATTTGCTCACCACATTTAC+TGG | + | chr8.1:72998518-72998537 | None:intergenic | 35.0% |
| ! | TTGGCTTCTTCTTTCTTTTC+AGG | + | chr8.1:72998590-72998609 | None:intergenic | 35.0% |
| ! | TTGGTAGGATGTTAGTTTCT+CGG | - | chr8.1:72998237-72998256 | MS.gene79924:intron | 35.0% |
| ! | TTTCATGCCTTTTCCTCAAT+GGG | + | chr8.1:72997213-72997232 | None:intergenic | 35.0% |
| !! | GATCGAGAGTGTATTTTGTT+TGG | - | chr8.1:72997601-72997620 | MS.gene79924:intron | 35.0% |
| !! | TGGATATGGTGTCACAATTT+GGG | - | chr8.1:72997627-72997646 | MS.gene79924:intron | 35.0% |
| !! | TTCTTTCTTTTCAGGCTCTT+TGG | + | chr8.1:72998582-72998601 | None:intergenic | 35.0% |
| !! | TTGGATATGGTGTCACAATT+TGG | - | chr8.1:72997626-72997645 | MS.gene79924:intron | 35.0% |
| !!! | GAGTGTATTTTGTTTGGTGT+TGG | - | chr8.1:72997607-72997626 | MS.gene79924:intron | 35.0% |
| AAGTTAAGGAACGTTGAAGG+AGG | + | chr8.1:72998289-72998308 | None:intergenic | 40.0% | |
| ACCAAAGAATCAGAGGATCA+AGG | + | chr8.1:72996998-72997017 | None:intergenic | 40.0% | |
| ACTTTCTCCCATTGAGGAAA+AGG | - | chr8.1:72997203-72997222 | MS.gene79924:intron | 40.0% | |
| AGAAGAAGGAAAGAAGGAAG+AGG | - | chr8.1:72998628-72998647 | MS.gene79924:intron | 40.0% | |
| AGTTTCAGTCAAAATAGGGG+GGG | - | chr8.1:72998384-72998403 | MS.gene79924:CDS | 40.0% | |
| CACGAGATCCTATTCAAGAA+TGG | - | chr8.1:72998705-72998724 | MS.gene79924:intron | 40.0% | |
| CAGTTTCAGTCAAAATAGGG+GGG | - | chr8.1:72998383-72998402 | MS.gene79924:CDS | 40.0% | |
| CATTCTTGAATAGGATCTCG+TGG | + | chr8.1:72998707-72998726 | None:intergenic | 40.0% | |
| CCAAAGAATCAGAGGATCAA+GGG | + | chr8.1:72996997-72997016 | None:intergenic | 40.0% | |
| CCAGTTTCAGTCAAAATAGG+GGG | - | chr8.1:72998382-72998401 | MS.gene79924:CDS | 40.0% | |
| CTATACATGTTTCGGTAGCT+TGG | + | chr8.1:72998317-72998336 | None:intergenic | 40.0% | |
| CTCTTTCATGTCCATTGAGA+TGG | + | chr8.1:72998465-72998484 | None:intergenic | 40.0% | |
| GAAGAAGGAAAGAAGGAAGA+GGG | - | chr8.1:72998629-72998648 | MS.gene79924:intron | 40.0% | |
| GAAGAGGGAAAGAAAGAAGA+AGG | - | chr8.1:72998644-72998663 | MS.gene79924:intron | 40.0% | |
| GAGAAGAAACTGACAGTGAT+AGG | - | chr8.1:72998482-72998501 | MS.gene79924:intron | 40.0% | |
| GAGGATCAAGGGTTAAAATC+AGG | + | chr8.1:72996986-72997005 | None:intergenic | 40.0% | |
| GGTAAGTTAAGGAACGTTGA+AGG | + | chr8.1:72998292-72998311 | None:intergenic | 40.0% | |
| TCATCAACTTTCTCCCATTG+AGG | - | chr8.1:72997197-72997216 | MS.gene79924:intron | 40.0% | |
| TGATGACAAGGACAAGAAGA+AGG | - | chr8.1:72996647-72996666 | MS.gene79924:intron | 40.0% | |
| TGCAAGTCATTTGCTTGTAG+TGG | + | chr8.1:72997905-72997924 | None:intergenic | 40.0% | |
| TTGAAGGAGGTTAAAGGAGA+AGG | + | chr8.1:72998276-72998295 | None:intergenic | 40.0% | |
| TTGGCTTCAGATGCTACAAA+GGG | - | chr8.1:72997174-72997193 | MS.gene79924:intron | 40.0% | |
| ! | GTTTCATGCCTTTTCCTCAA+TGG | + | chr8.1:72997214-72997233 | None:intergenic | 40.0% |
| ! | TCTCTTCCATGCTTTGAACA+TGG | + | chr8.1:72998775-72998794 | None:intergenic | 40.0% |
| ! | TGGTAGGATGTTAGTTTCTC+GGG | - | chr8.1:72998238-72998257 | MS.gene79924:intron | 40.0% |
| ! | TTTGGCTTCAGATGCTACAA+AGG | - | chr8.1:72997173-72997192 | MS.gene79924:intron | 40.0% |
| !! | GTAGCTTGGTTGGTAAGTTA+AGG | + | chr8.1:72998303-72998322 | None:intergenic | 40.0% |
| ACATGTTTCGGTAGCTTGGT+TGG | + | chr8.1:72998313-72998332 | None:intergenic | 45.0% | |
| AGGGATTGATGCCATCTCAA+TGG | - | chr8.1:72998451-72998470 | MS.gene79924:intron | 45.0% | |
| CCCTTGATCCTCTGATTCTT+TGG | - | chr8.1:72996994-72997013 | MS.gene79924:intron | 45.0% | |
| CTTGAATAGGATCTCGTGGT+GGG | + | chr8.1:72998703-72998722 | None:intergenic | 45.0% | |
| GGAACGTTGAAGGAGGTTAA+AGG | + | chr8.1:72998282-72998301 | None:intergenic | 45.0% | |
| TCTTGAATAGGATCTCGTGG+TGG | + | chr8.1:72998704-72998723 | None:intergenic | 45.0% | |
| TTGAATAGGATCTCGTGGTG+GGG | + | chr8.1:72998702-72998721 | None:intergenic | 45.0% | |
| !! | TTCTTTTCAGGCTCTTTGGC+TGG | + | chr8.1:72998578-72998597 | None:intergenic | 45.0% |
| !!! | CCCCCTATTTTGACTGAAAC+TGG | + | chr8.1:72998385-72998404 | None:intergenic | 45.0% |
| !!! | TATATAATCTTTTTTATTTT+GGG | - | chr8.1:72996519-72996538 | MS.gene79924:CDS | 5.0% |
| !!! | TTATATAATCTTTTTTATTT+TGG | - | chr8.1:72996518-72996537 | MS.gene79924:CDS | 5.0% |
| GAGGTTAAAGGAGAAGGTCG+TGG | + | chr8.1:72998270-72998289 | None:intergenic | 50.0% | |
| TGAATAGGATCTCGTGGTGG+GGG | + | chr8.1:72998701-72998720 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 72996217 | 72998820 | 72996217 | ID=MS.gene79924 |
| chr8.1 | mRNA | 72996217 | 72998820 | 72996217 | ID=MS.gene79924.t1;Parent=MS.gene79924 |
| chr8.1 | exon | 72998815 | 72998820 | 72998815 | ID=MS.gene79924.t1.exon1;Parent=MS.gene79924.t1 |
| chr8.1 | CDS | 72998815 | 72998820 | 72998815 | ID=cds.MS.gene79924.t1;Parent=MS.gene79924.t1 |
| chr8.1 | exon | 72998341 | 72998416 | 72998341 | ID=MS.gene79924.t1.exon2;Parent=MS.gene79924.t1 |
| chr8.1 | CDS | 72998341 | 72998416 | 72998341 | ID=cds.MS.gene79924.t1;Parent=MS.gene79924.t1 |
| chr8.1 | exon | 72996217 | 72996584 | 72996217 | ID=MS.gene79924.t1.exon3;Parent=MS.gene79924.t1 |
| chr8.1 | CDS | 72996217 | 72996584 | 72996217 | ID=cds.MS.gene79924.t1;Parent=MS.gene79924.t1 |
| Gene Sequence |
| Protein sequence |
