Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80027.t1 | XP_003618770.1 | 96.2 | 417 | 16 | 0 | 1 | 417 | 1 | 417 | 4.00E-201 | 710.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80027.t1 | Q8VYR5 | 50.0 | 418 | 202 | 3 | 1 | 417 | 1 | 412 | 1.0e-96 | 355.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80027.t1 | G7KN56 | 96.2 | 417 | 16 | 0 | 1 | 417 | 1 | 417 | 2.9e-201 | 710.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene80027 | MS.gene42101 | PPI |
MS.gene80027 | MS.gene87037 | PPI |
MS.gene80027 | MS.gene87771 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80027.t1 | MTR_6g021740 | 95.923 | 417 | 17 | 0 | 1 | 417 | 1 | 417 | 0.0 | 836 |
MS.gene80027.t1 | MTR_2g437460 | 30.000 | 150 | 105 | 0 | 43 | 192 | 202 | 351 | 3.13e-16 | 81.3 |
MS.gene80027.t1 | MTR_0237s0070 | 23.889 | 360 | 250 | 13 | 33 | 383 | 317 | 661 | 1.65e-14 | 75.9 |
MS.gene80027.t1 | MTR_6g079830 | 21.411 | 411 | 291 | 10 | 3 | 409 | 196 | 578 | 5.72e-14 | 74.3 |
MS.gene80027.t1 | MTR_6g079180 | 21.703 | 364 | 257 | 9 | 8 | 369 | 20 | 357 | 6.31e-14 | 73.2 |
MS.gene80027.t1 | MTR_1g033960 | 29.530 | 149 | 105 | 0 | 44 | 192 | 263 | 411 | 7.65e-14 | 73.9 |
MS.gene80027.t1 | MTR_1g033960 | 21.472 | 326 | 200 | 10 | 38 | 318 | 147 | 461 | 1.44e-11 | 67.0 |
MS.gene80027.t1 | MTR_3g105900 | 26.174 | 149 | 110 | 0 | 48 | 196 | 939 | 1087 | 8.87e-14 | 73.9 |
MS.gene80027.t1 | MTR_3g105900 | 23.372 | 261 | 180 | 4 | 67 | 320 | 222 | 469 | 9.55e-12 | 67.8 |
MS.gene80027.t1 | MTR_4g075270 | 22.546 | 377 | 245 | 10 | 67 | 408 | 485 | 849 | 1.06e-13 | 73.6 |
MS.gene80027.t1 | MTR_6g079210 | 21.652 | 351 | 259 | 8 | 38 | 383 | 31 | 370 | 1.89e-13 | 72.0 |
MS.gene80027.t1 | MTR_2g026645 | 26.275 | 255 | 174 | 7 | 44 | 294 | 286 | 530 | 2.16e-13 | 72.4 |
MS.gene80027.t1 | MTR_8g105170 | 26.829 | 164 | 116 | 2 | 34 | 195 | 371 | 532 | 3.10e-13 | 72.4 |
MS.gene80027.t1 | MTR_1g068960 | 28.571 | 161 | 115 | 0 | 34 | 194 | 436 | 596 | 5.10e-13 | 71.2 |
MS.gene80027.t1 | MTR_6g079920 | 21.818 | 385 | 270 | 9 | 3 | 383 | 196 | 553 | 5.49e-13 | 71.2 |
MS.gene80027.t1 | MTR_4g074390 | 22.086 | 326 | 218 | 6 | 17 | 326 | 243 | 548 | 6.39e-13 | 70.9 |
MS.gene80027.t1 | MTR_5g095130 | 24.521 | 261 | 175 | 4 | 44 | 304 | 621 | 859 | 8.99e-13 | 70.9 |
MS.gene80027.t1 | MTR_6g079310 | 23.611 | 360 | 251 | 13 | 33 | 383 | 138 | 482 | 1.10e-12 | 70.1 |
MS.gene80027.t1 | MTR_6g079240 | 23.611 | 360 | 251 | 13 | 33 | 383 | 26 | 370 | 1.22e-12 | 69.7 |
MS.gene80027.t1 | MTR_6g069180 | 24.128 | 344 | 243 | 11 | 44 | 383 | 200 | 529 | 1.28e-12 | 69.7 |
MS.gene80027.t1 | MTR_6g078160 | 22.767 | 347 | 244 | 9 | 44 | 383 | 195 | 524 | 1.59e-12 | 69.7 |
MS.gene80027.t1 | MTR_1g095880 | 24.242 | 264 | 188 | 7 | 66 | 326 | 302 | 556 | 2.30e-12 | 69.3 |
MS.gene80027.t1 | MTR_3g088950 | 23.214 | 168 | 125 | 1 | 25 | 192 | 236 | 399 | 2.66e-12 | 68.9 |
MS.gene80027.t1 | MTR_4g108060 | 21.779 | 326 | 219 | 6 | 17 | 326 | 109 | 414 | 2.97e-12 | 68.6 |
MS.gene80027.t1 | MTR_7g017570 | 27.326 | 172 | 125 | 0 | 35 | 206 | 344 | 515 | 5.22e-12 | 68.2 |
MS.gene80027.t1 | MTR_0014s0250 | 25.161 | 155 | 116 | 0 | 38 | 192 | 331 | 485 | 5.44e-12 | 67.8 |
MS.gene80027.t1 | MTR_1g035250 | 27.976 | 168 | 121 | 0 | 39 | 206 | 273 | 440 | 6.32e-12 | 67.8 |
MS.gene80027.t1 | MTR_4g108060 | 21.779 | 326 | 219 | 6 | 17 | 326 | 243 | 548 | 6.48e-12 | 67.8 |
MS.gene80027.t1 | MTR_4g094688 | 26.554 | 177 | 128 | 1 | 34 | 210 | 311 | 485 | 6.89e-12 | 68.2 |
MS.gene80027.t1 | MTR_8g098755 | 28.859 | 149 | 106 | 0 | 44 | 192 | 314 | 462 | 9.39e-12 | 67.4 |
MS.gene80027.t1 | MTR_8g107050 | 23.203 | 306 | 222 | 5 | 34 | 336 | 394 | 689 | 1.13e-11 | 67.0 |
MS.gene80027.t1 | MTR_5g096480 | 32.558 | 129 | 80 | 2 | 71 | 195 | 1 | 126 | 1.27e-11 | 62.8 |
MS.gene80027.t1 | MTR_6g079250 | 25.153 | 163 | 122 | 0 | 39 | 201 | 176 | 338 | 1.47e-11 | 65.9 |
MS.gene80027.t1 | MTR_6g079250 | 22.093 | 344 | 249 | 8 | 33 | 369 | 26 | 357 | 3.67e-11 | 64.7 |
MS.gene80027.t1 | MTR_6g077540 | 22.754 | 167 | 129 | 0 | 37 | 203 | 356 | 522 | 1.51e-11 | 66.6 |
MS.gene80027.t1 | MTR_1g086500 | 27.703 | 148 | 98 | 3 | 39 | 181 | 154 | 297 | 1.58e-11 | 66.2 |
MS.gene80027.t1 | MTR_0308s0020 | 25.161 | 155 | 116 | 0 | 38 | 192 | 327 | 481 | 1.61e-11 | 66.2 |
MS.gene80027.t1 | MTR_0177s0060 | 25.610 | 164 | 111 | 3 | 38 | 191 | 303 | 465 | 1.61e-11 | 66.2 |
MS.gene80027.t1 | MTR_7g017530 | 26.744 | 172 | 126 | 0 | 35 | 206 | 309 | 480 | 1.63e-11 | 66.6 |
MS.gene80027.t1 | MTR_8g107050 | 23.411 | 299 | 216 | 5 | 34 | 329 | 394 | 682 | 1.84e-11 | 66.6 |
MS.gene80027.t1 | MTR_3g053350 | 22.896 | 297 | 205 | 6 | 34 | 321 | 476 | 757 | 2.18e-11 | 66.2 |
MS.gene80027.t1 | MTR_3g053350 | 28.571 | 126 | 90 | 0 | 67 | 192 | 299 | 424 | 3.90e-11 | 65.5 |
MS.gene80027.t1 | MTR_4g133740 | 25.581 | 172 | 126 | 2 | 34 | 204 | 310 | 480 | 2.25e-11 | 66.2 |
MS.gene80027.t1 | MTR_3g034990 | 23.810 | 147 | 112 | 0 | 42 | 188 | 345 | 491 | 3.03e-11 | 65.5 |
MS.gene80027.t1 | MTR_6g080200 | 26.923 | 156 | 110 | 2 | 39 | 192 | 314 | 467 | 3.04e-11 | 65.5 |
MS.gene80027.t1 | MTR_6g078190 | 26.282 | 156 | 115 | 0 | 39 | 194 | 171 | 326 | 4.12e-11 | 65.1 |
MS.gene80027.t1 | MTR_2g026635 | 28.169 | 142 | 101 | 1 | 44 | 184 | 288 | 429 | 4.43e-11 | 65.1 |
MS.gene80027.t1 | MTR_6g069300 | 24.490 | 147 | 111 | 0 | 38 | 184 | 337 | 483 | 4.45e-11 | 65.1 |
MS.gene80027.t1 | MTR_5g042370 | 26.752 | 157 | 115 | 0 | 35 | 191 | 261 | 417 | 5.08e-11 | 65.1 |
MS.gene80027.t1 | MTR_8g071970 | 21.036 | 309 | 228 | 5 | 37 | 340 | 483 | 780 | 5.37e-11 | 65.1 |
MS.gene80027.t1 | MTR_7g012890 | 23.718 | 156 | 119 | 0 | 37 | 192 | 331 | 486 | 5.59e-11 | 64.7 |
MS.gene80027.t1 | MTR_1g040725 | 26.752 | 157 | 115 | 0 | 35 | 191 | 841 | 997 | 5.88e-11 | 65.1 |
MS.gene80027.t1 | MTR_7g067460 | 24.275 | 276 | 160 | 9 | 48 | 319 | 167 | 397 | 6.02e-11 | 64.7 |
MS.gene80027.t1 | MTR_5g045490 | 26.087 | 161 | 118 | 1 | 35 | 194 | 344 | 504 | 7.93e-11 | 64.3 |
MS.gene80027.t1 | MTR_6g079440 | 24.691 | 162 | 113 | 1 | 39 | 191 | 328 | 489 | 7.94e-11 | 64.3 |
MS.gene80027.t1 | MTR_0573s0020 | 24.051 | 158 | 120 | 0 | 44 | 201 | 60 | 217 | 7.96e-11 | 62.8 |
MS.gene80027.t1 | MTR_2g036560 | 31.333 | 150 | 101 | 2 | 44 | 192 | 447 | 595 | 8.30e-11 | 64.3 |
MS.gene80027.t1 | MTR_3g114700 | 29.530 | 149 | 105 | 0 | 44 | 192 | 281 | 429 | 8.62e-11 | 63.9 |
MS.gene80027.t1 | MTR_1g031720 | 26.562 | 128 | 94 | 0 | 65 | 192 | 437 | 564 | 8.84e-11 | 64.3 |
MS.gene80027.t1 | MTR_4g107180 | 22.581 | 155 | 120 | 0 | 38 | 192 | 226 | 380 | 9.09e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80027.t1 | AT4G35850 | 55.502 | 418 | 179 | 3 | 1 | 417 | 1 | 412 | 1.02e-176 | 501 |
MS.gene80027.t1 | AT5G61990 | 24.194 | 310 | 221 | 4 | 35 | 340 | 407 | 706 | 1.93e-17 | 85.5 |
MS.gene80027.t1 | AT1G64583 | 24.299 | 321 | 222 | 8 | 3 | 319 | 46 | 349 | 8.94e-14 | 73.2 |
MS.gene80027.t1 | AT1G64583 | 24.062 | 320 | 226 | 7 | 4 | 319 | 68 | 374 | 1.41e-13 | 72.8 |
MS.gene80027.t1 | AT3G49730 | 24.020 | 204 | 142 | 3 | 16 | 218 | 214 | 405 | 1.81e-13 | 72.8 |
MS.gene80027.t1 | AT5G16640 | 23.039 | 408 | 284 | 10 | 20 | 416 | 88 | 476 | 2.35e-13 | 72.0 |
MS.gene80027.t1 | AT1G09820 | 22.449 | 392 | 256 | 11 | 34 | 405 | 212 | 575 | 3.56e-13 | 71.6 |
MS.gene80027.t1 | AT1G09900 | 24.571 | 350 | 209 | 12 | 8 | 324 | 150 | 477 | 3.69e-13 | 71.6 |
MS.gene80027.t1 | AT2G37230 | 26.000 | 150 | 111 | 0 | 43 | 192 | 218 | 367 | 3.89e-13 | 71.6 |
MS.gene80027.t1 | AT2G02150 | 24.342 | 304 | 208 | 5 | 45 | 340 | 262 | 551 | 4.87e-13 | 71.6 |
MS.gene80027.t1 | AT2G02150 | 24.342 | 304 | 208 | 5 | 45 | 340 | 262 | 551 | 4.87e-13 | 71.6 |
MS.gene80027.t1 | AT5G39710 | 21.231 | 325 | 209 | 5 | 16 | 340 | 287 | 564 | 7.38e-13 | 70.9 |
MS.gene80027.t1 | AT5G39710 | 20.958 | 334 | 226 | 6 | 41 | 340 | 165 | 494 | 2.58e-11 | 66.2 |
MS.gene80027.t1 | AT5G64320 | 25.574 | 305 | 205 | 7 | 30 | 326 | 304 | 594 | 7.63e-13 | 70.9 |
MS.gene80027.t1 | AT2G16880 | 26.241 | 141 | 104 | 0 | 48 | 188 | 243 | 383 | 9.11e-13 | 70.5 |
MS.gene80027.t1 | AT2G17140 | 23.978 | 367 | 248 | 9 | 44 | 406 | 325 | 664 | 1.30e-12 | 70.1 |
MS.gene80027.t1 | AT2G17140 | 23.978 | 367 | 248 | 9 | 44 | 406 | 325 | 664 | 1.30e-12 | 70.1 |
MS.gene80027.t1 | AT4G16390 | 27.500 | 160 | 115 | 1 | 34 | 192 | 304 | 463 | 2.45e-12 | 69.3 |
MS.gene80027.t1 | AT4G19440 | 27.703 | 148 | 101 | 2 | 48 | 192 | 556 | 700 | 4.52e-12 | 68.6 |
MS.gene80027.t1 | AT4G19440 | 27.703 | 148 | 101 | 2 | 48 | 192 | 556 | 700 | 4.52e-12 | 68.6 |
MS.gene80027.t1 | AT4G19440 | 27.703 | 148 | 101 | 2 | 48 | 192 | 556 | 700 | 4.52e-12 | 68.6 |
MS.gene80027.t1 | AT4G19440 | 27.703 | 148 | 101 | 2 | 48 | 192 | 556 | 700 | 4.52e-12 | 68.6 |
MS.gene80027.t1 | AT1G63400 | 21.851 | 389 | 283 | 7 | 33 | 416 | 108 | 480 | 5.45e-12 | 68.2 |
MS.gene80027.t1 | AT1G06580 | 22.807 | 285 | 214 | 3 | 42 | 326 | 5 | 283 | 6.91e-12 | 67.0 |
MS.gene80027.t1 | AT1G06580 | 23.824 | 319 | 229 | 8 | 27 | 340 | 58 | 367 | 8.24e-11 | 63.9 |
MS.gene80027.t1 | AT1G06580 | 22.807 | 285 | 214 | 3 | 42 | 326 | 5 | 283 | 6.91e-12 | 67.0 |
MS.gene80027.t1 | AT1G06580 | 23.824 | 319 | 229 | 8 | 27 | 340 | 58 | 367 | 8.24e-11 | 63.9 |
MS.gene80027.t1 | AT5G46680 | 23.864 | 264 | 176 | 9 | 44 | 297 | 82 | 330 | 7.95e-12 | 67.4 |
MS.gene80027.t1 | AT1G62720 | 21.562 | 320 | 207 | 4 | 44 | 363 | 103 | 378 | 8.17e-12 | 67.4 |
MS.gene80027.t1 | AT5G01110 | 19.165 | 407 | 293 | 7 | 39 | 415 | 194 | 594 | 9.83e-12 | 67.4 |
MS.gene80027.t1 | AT5G01110 | 19.165 | 407 | 293 | 7 | 39 | 415 | 222 | 622 | 1.08e-11 | 67.4 |
MS.gene80027.t1 | AT1G06580 | 22.807 | 285 | 214 | 3 | 42 | 326 | 111 | 389 | 1.09e-11 | 67.0 |
MS.gene80027.t1 | AT1G63230 | 23.464 | 179 | 135 | 1 | 39 | 217 | 140 | 316 | 1.18e-11 | 65.9 |
MS.gene80027.t1 | AT5G65560 | 24.483 | 290 | 183 | 8 | 67 | 324 | 275 | 560 | 1.56e-11 | 67.0 |
MS.gene80027.t1 | AT5G65560 | 24.483 | 290 | 183 | 8 | 67 | 324 | 275 | 560 | 1.56e-11 | 67.0 |
MS.gene80027.t1 | AT5G65560 | 24.483 | 290 | 183 | 8 | 67 | 324 | 275 | 560 | 1.56e-11 | 67.0 |
MS.gene80027.t1 | AT1G62680 | 22.414 | 290 | 199 | 7 | 48 | 326 | 123 | 397 | 1.74e-11 | 66.2 |
MS.gene80027.t1 | AT1G62680 | 22.414 | 290 | 199 | 7 | 48 | 326 | 123 | 397 | 1.74e-11 | 66.2 |
MS.gene80027.t1 | AT5G15010 | 27.273 | 143 | 99 | 2 | 44 | 185 | 372 | 510 | 1.74e-11 | 66.2 |
MS.gene80027.t1 | AT5G65820 | 26.389 | 144 | 101 | 1 | 75 | 218 | 282 | 420 | 2.25e-11 | 66.2 |
MS.gene80027.t1 | AT3G16890 | 22.381 | 210 | 147 | 2 | 35 | 228 | 321 | 530 | 2.48e-11 | 65.9 |
MS.gene80027.t1 | AT3G60050 | 27.564 | 156 | 113 | 0 | 40 | 195 | 214 | 369 | 2.51e-11 | 65.9 |
MS.gene80027.t1 | AT3G60050 | 27.564 | 156 | 113 | 0 | 40 | 195 | 214 | 369 | 2.51e-11 | 65.9 |
MS.gene80027.t1 | AT1G05670 | 26.087 | 161 | 119 | 0 | 35 | 195 | 376 | 536 | 2.71e-11 | 65.9 |
MS.gene80027.t1 | AT1G05670 | 26.087 | 161 | 119 | 0 | 35 | 195 | 376 | 536 | 2.71e-11 | 65.9 |
MS.gene80027.t1 | AT1G05670 | 26.087 | 161 | 119 | 0 | 35 | 195 | 376 | 536 | 2.71e-11 | 65.9 |
MS.gene80027.t1 | AT5G41170 | 20.513 | 312 | 206 | 3 | 49 | 359 | 11 | 281 | 2.71e-11 | 65.5 |
MS.gene80027.t1 | AT3G16890 | 22.381 | 210 | 147 | 2 | 35 | 228 | 450 | 659 | 2.89e-11 | 65.9 |
MS.gene80027.t1 | AT5G04810 | 25.974 | 154 | 108 | 1 | 34 | 181 | 718 | 871 | 2.91e-11 | 66.2 |
MS.gene80027.t1 | AT3G48810 | 23.123 | 333 | 206 | 11 | 35 | 327 | 271 | 593 | 3.44e-11 | 65.5 |
MS.gene80027.t1 | AT5G41170 | 20.513 | 312 | 206 | 3 | 49 | 359 | 111 | 381 | 3.55e-11 | 65.5 |
MS.gene80027.t1 | AT5G41170 | 20.513 | 312 | 206 | 3 | 49 | 359 | 111 | 381 | 4.25e-11 | 65.1 |
MS.gene80027.t1 | AT2G15630 | 26.515 | 132 | 97 | 0 | 67 | 198 | 419 | 550 | 4.64e-11 | 65.1 |
MS.gene80027.t1 | AT1G63130 | 21.192 | 302 | 228 | 4 | 41 | 340 | 147 | 440 | 5.13e-11 | 65.1 |
MS.gene80027.t1 | AT1G63130 | 21.192 | 302 | 228 | 4 | 41 | 340 | 147 | 440 | 5.13e-11 | 65.1 |
MS.gene80027.t1 | AT1G79490 | 25.455 | 165 | 123 | 0 | 34 | 198 | 337 | 501 | 6.35e-11 | 65.1 |
MS.gene80027.t1 | AT1G62670 | 21.122 | 303 | 227 | 5 | 41 | 340 | 147 | 440 | 6.80e-11 | 64.7 |
MS.gene80027.t1 | AT1G62670 | 21.122 | 303 | 227 | 5 | 41 | 340 | 147 | 440 | 6.80e-11 | 64.7 |
Find 99 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGGAGCTCACTTCCCATTT+TGG | 0.146501 | 6.1:-5185269 | None:intergenic |
GGGTCACTCCAACGGGTTTC+GGG | 0.159345 | 6.1:+5174180 | MS.gene80027:CDS |
AAATTTCTTCATTCTCTCTT+AGG | 0.223369 | 6.1:+5174051 | MS.gene80027:CDS |
TTTGAGGACTTTCTAGCTTT+AGG | 0.243264 | 6.1:+5184224 | MS.gene80027:CDS |
TTGAGGACTTTCTAGCTTTA+GGG | 0.266162 | 6.1:+5184225 | MS.gene80027:CDS |
TGCATGACAATATAGATATC+AGG | 0.270813 | 6.1:-5180322 | None:intergenic |
TCAGGAATACAACACTGTTT+TGG | 0.277702 | 6.1:+5174263 | MS.gene80027:CDS |
CAGATGTAGGTTTGTACATT+TGG | 0.278420 | 6.1:-5177671 | None:intergenic |
TGATATGACCGCAGCTGGTC+TGG | 0.279892 | 6.1:+5178078 | MS.gene80027:CDS |
GCATCGAAATCATCAGTAAA+AGG | 0.287772 | 6.1:-5178154 | None:intergenic |
TGGGTCACTCCAACGGGTTT+CGG | 0.303750 | 6.1:+5174179 | MS.gene80027:CDS |
GAACTCTGATCAGGCTGTTC+AGG | 0.318795 | 6.1:+5177504 | MS.gene80027:CDS |
GCATGATGCTTTCTTCTTCA+AGG | 0.330861 | 6.1:+5176825 | MS.gene80027:CDS |
TTAAATAAGTTCTGCTATGC+TGG | 0.341477 | 6.1:+5178103 | MS.gene80027:CDS |
CCCATTTCGCACTGCTAAAC+GGG | 0.344141 | 6.1:-5174160 | None:intergenic |
GCAAATTTCTATAAATATAC+TGG | 0.351576 | 6.1:+5185124 | MS.gene80027:CDS |
ATACTAATGCTAACTACATA+TGG | 0.360715 | 6.1:+5185432 | MS.gene80027:CDS |
ATATTGTCATGCAAGTAATT+AGG | 0.361423 | 6.1:+5180332 | MS.gene80027:CDS |
GGGAAGTGAGCTCCTGATTA+TGG | 0.363803 | 6.1:+5185276 | MS.gene80027:CDS |
TTCCAGCAGAAGAGTATAAC+AGG | 0.368904 | 6.1:+5174220 | MS.gene80027:CDS |
CCAAATGAAAATCATGGGTT+TGG | 0.377536 | 6.1:+5176849 | MS.gene80027:CDS |
CTCCTGTTATACTCTTCTGC+TGG | 0.379633 | 6.1:-5174222 | None:intergenic |
CACTCGGTCTATGCGTCCTT+GGG | 0.383140 | 6.1:-5177714 | None:intergenic |
TACATTTGGCTTTACTTCCA+TGG | 0.387492 | 6.1:-5177657 | None:intergenic |
TTTCACCAGCAGCCATAATC+AGG | 0.387899 | 6.1:-5185288 | None:intergenic |
ACACTCGGTCTATGCGTCCT+TGG | 0.391054 | 6.1:-5177715 | None:intergenic |
ACCCATTTCGCACTGCTAAA+CGG | 0.391566 | 6.1:-5174161 | None:intergenic |
ACCCGTTTAGCAGTGCGAAA+TGG | 0.400081 | 6.1:+5174159 | MS.gene80027:CDS |
CAACGGCAGAATACGTTACT+AGG | 0.406550 | 6.1:+5178375 | MS.gene80027:CDS |
CCCGTTTAGCAGTGCGAAAT+GGG | 0.407153 | 6.1:+5174160 | MS.gene80027:CDS |
TATGAAGATATGATGCTTGA+TGG | 0.425865 | 6.1:+5176739 | MS.gene80027:CDS |
CAAGGACCAAATGAAAATCA+TGG | 0.433875 | 6.1:+5176843 | MS.gene80027:CDS |
GCGAAATGGGTCACTCCAAC+GGG | 0.441863 | 6.1:+5174173 | MS.gene80027:CDS |
GATATGACCGCAGCTGGTCT+GGG | 0.446322 | 6.1:+5178079 | MS.gene80027:CDS |
CAGCAGCATTAAATGCAGTA+TGG | 0.448079 | 6.1:-5178433 | None:intergenic |
GGCGTGGAGGATTCTTGAAC+AGG | 0.453377 | 6.1:+5178396 | MS.gene80027:CDS |
CTGCTGGAACATTGTAGAAT+CGG | 0.454402 | 6.1:-5174206 | None:intergenic |
TGCGGATTTCAAGAATGTTA+AGG | 0.462395 | 6.1:+5178454 | MS.gene80027:CDS |
GGATGCACTTCTTGAAATGC+TGG | 0.478829 | 6.1:+5180282 | MS.gene80027:CDS |
CACCATCACATTCTCAGCAT+TGG | 0.479555 | 6.1:-5178321 | None:intergenic |
ACTTCTTGAAATGCTGGAAA+AGG | 0.494222 | 6.1:+5180288 | MS.gene80027:CDS |
AACTTTCTAATTTCAACCTG+TGG | 0.505817 | 6.1:+5177472 | MS.gene80027:CDS |
GAAATGCAAGAACTCTGATC+AGG | 0.506823 | 6.1:+5177495 | MS.gene80027:CDS |
GTCCGTGATATGACCGCAGC+TGG | 0.507308 | 6.1:+5178073 | MS.gene80027:CDS |
GACTTTCTAGCTTTAGGGAA+GGG | 0.507488 | 6.1:+5184230 | MS.gene80027:CDS |
TGCAGTATGGTATGCAACAA+AGG | 0.508294 | 6.1:-5178420 | None:intergenic |
TGACTGCAGACGCTTGCAGA+GGG | 0.508918 | 6.1:+5185071 | MS.gene80027:intron |
GATTATGGCTGCTGGTGAAA+AGG | 0.512069 | 6.1:+5185291 | MS.gene80027:CDS |
ACTGCAGACGCTTGCAGAGG+GGG | 0.512879 | 6.1:+5185073 | MS.gene80027:intron |
CAAGGGAATGAAAAGTTTCA+CGG | 0.514406 | 6.1:-5176774 | None:intergenic |
CTTGCTGTTGGATCCATGAG+AGG | 0.520661 | 6.1:+5176793 | MS.gene80027:CDS |
TGCAGTTGAAGCATACTACC+AGG | 0.521493 | 6.1:+5185493 | MS.gene80027:CDS |
TACTAATGCTAACTACATAT+GGG | 0.522217 | 6.1:+5185433 | MS.gene80027:CDS |
AAGACCACGGTCAATCTCTC+CGG | 0.522416 | 6.1:-5184195 | None:intergenic |
ATCGGATCCCCGAAACCCGT+TGG | 0.523130 | 6.1:-5174188 | None:intergenic |
TGCGAAATGGGTCACTCCAA+CGG | 0.529959 | 6.1:+5174172 | MS.gene80027:CDS |
ATGGTTGGCTACACTGAGAA+AGG | 0.530317 | 6.1:+5185098 | MS.gene80027:CDS |
TAAATAAGTTCTGCTATGCT+GGG | 0.534812 | 6.1:+5178104 | MS.gene80027:CDS |
AAGGACCAAATGAAAATCAT+GGG | 0.535637 | 6.1:+5176844 | MS.gene80027:CDS |
TGCAGGTGCTATTGTCATGC+CGG | 0.537597 | 6.1:+5184176 | MS.gene80027:intron |
AGAGTTCTTGCATTTCCCAC+AGG | 0.538323 | 6.1:-5177488 | None:intergenic |
GCAGTATGGTATGCAACAAA+GGG | 0.538769 | 6.1:-5178419 | None:intergenic |
GCATGACAATATAGATATCA+GGG | 0.542739 | 6.1:-5180321 | None:intergenic |
TTTGGAGGAGATGAAATCCA+TGG | 0.546073 | 6.1:+5177640 | MS.gene80027:CDS |
CTAGTAACGTATTCTGCCGT+TGG | 0.551607 | 6.1:-5178374 | None:intergenic |
ACTTTCTAATTTCAACCTGT+GGG | 0.553816 | 6.1:+5177473 | MS.gene80027:CDS |
ATGCATTCTAGAGCCTCTCA+TGG | 0.555834 | 6.1:-5176806 | None:intergenic |
TACTGCATTTAATGCTGCTG+CGG | 0.567016 | 6.1:+5178436 | MS.gene80027:CDS |
GAATGAAAAGTTTCACGGGT+TGG | 0.567753 | 6.1:-5176769 | None:intergenic |
AAGGGAATGAAAAGTTTCAC+GGG | 0.575462 | 6.1:-5176773 | None:intergenic |
GAGCTCCTGATTATGGCTGC+TGG | 0.578547 | 6.1:+5185283 | MS.gene80027:CDS |
CAATGCTGAGAATGTGATGG+TGG | 0.593534 | 6.1:+5178322 | MS.gene80027:CDS |
ATGTGGAGAGGTCAAAGCAA+TGG | 0.595505 | 6.1:+5178276 | MS.gene80027:CDS |
CTTCAACTGCAGCTAACGAA+GGG | 0.596213 | 6.1:-5185481 | None:intergenic |
GACCAGCTGCGGTCATATCA+CGG | 0.600989 | 6.1:-5178075 | None:intergenic |
GCAGAATACGTTACTAGGCG+TGG | 0.606407 | 6.1:+5178380 | MS.gene80027:CDS |
CTACATGCATGTGCAGCCCA+AGG | 0.607018 | 6.1:+5177698 | MS.gene80027:CDS |
GCTTCAACTGCAGCTAACGA+AGG | 0.607314 | 6.1:-5185482 | None:intergenic |
CTCTCATGGATCCAACAGCA+AGG | 0.608407 | 6.1:-5176792 | None:intergenic |
GGTCACTCCAACGGGTTTCG+GGG | 0.609872 | 6.1:+5174181 | MS.gene80027:CDS |
ATTTAATCCCAGACCAGCTG+CGG | 0.616513 | 6.1:-5178086 | None:intergenic |
GGACTTTCTAGCTTTAGGGA+AGG | 0.623013 | 6.1:+5184229 | MS.gene80027:CDS |
TGCATGTAGCAAGCAGATGT+AGG | 0.624370 | 6.1:-5177684 | None:intergenic |
AATAACTCACTTTCAAACCC+TGG | 0.633843 | 6.1:-5185511 | None:intergenic |
CATGACAATATAGATATCAG+GGG | 0.638180 | 6.1:-5180320 | None:intergenic |
TCTCATGGATCCAACAGCAA+GGG | 0.638957 | 6.1:-5176791 | None:intergenic |
GACTGCAGACGCTTGCAGAG+GGG | 0.655013 | 6.1:+5185072 | MS.gene80027:intron |
GATGGTGGGTGTTACTGATG+AGG | 0.655231 | 6.1:+5178337 | MS.gene80027:CDS |
ATGACTGCAGACGCTTGCAG+AGG | 0.659637 | 6.1:+5185070 | MS.gene80027:intron |
GCAGTTGAAGCATACTACCA+GGG | 0.677884 | 6.1:+5185494 | MS.gene80027:CDS |
CGCCAATGCTGAGAATGTGA+TGG | 0.683499 | 6.1:+5178319 | MS.gene80027:CDS |
TAATGCTGCAGAAATTTATG+TGG | 0.684727 | 6.1:+5184253 | MS.gene80027:CDS |
GTTCTCTCAATGCTCAACGA+AGG | 0.689538 | 6.1:+5174286 | MS.gene80027:CDS |
ATATGATGCTTGATGGAGTG+AGG | 0.694446 | 6.1:+5176746 | MS.gene80027:CDS |
GGAGTTATATAACTTACCAA+CGG | 0.695293 | 6.1:+5178358 | MS.gene80027:CDS |
AATGCTGAGAATGTGATGGT+GGG | 0.697576 | 6.1:+5178323 | MS.gene80027:CDS |
AGGTTATTGAGTATGTGGAG+AGG | 0.702509 | 6.1:+5178264 | MS.gene80027:intron |
GAATACGTTACTAGGCGTGG+AGG | 0.710334 | 6.1:+5178383 | MS.gene80027:CDS |
CATGCCGGAGAGATTGACCG+TGG | 0.731385 | 6.1:+5184191 | MS.gene80027:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 5174048 | 5185523 | 5174048 | ID=MS.gene80027 |
chr6.1 | mRNA | 5174048 | 5185523 | 5174048 | ID=MS.gene80027.t1;Parent=MS.gene80027 |
chr6.1 | exon | 5174048 | 5174072 | 5174048 | ID=MS.gene80027.t1.exon1;Parent=MS.gene80027.t1 |
chr6.1 | CDS | 5174048 | 5174072 | 5174048 | ID=cds.MS.gene80027.t1;Parent=MS.gene80027.t1 |
chr6.1 | exon | 5174154 | 5174307 | 5174154 | ID=MS.gene80027.t1.exon2;Parent=MS.gene80027.t1 |
chr6.1 | CDS | 5174154 | 5174307 | 5174154 | ID=cds.MS.gene80027.t1;Parent=MS.gene80027.t1 |
chr6.1 | exon | 5176717 | 5176879 | 5176717 | ID=MS.gene80027.t1.exon3;Parent=MS.gene80027.t1 |
chr6.1 | CDS | 5176717 | 5176879 | 5176717 | ID=cds.MS.gene80027.t1;Parent=MS.gene80027.t1 |
chr6.1 | exon | 5177460 | 5177525 | 5177460 | ID=MS.gene80027.t1.exon4;Parent=MS.gene80027.t1 |
chr6.1 | CDS | 5177460 | 5177525 | 5177460 | ID=cds.MS.gene80027.t1;Parent=MS.gene80027.t1 |
chr6.1 | exon | 5177638 | 5177735 | 5177638 | ID=MS.gene80027.t1.exon5;Parent=MS.gene80027.t1 |
chr6.1 | CDS | 5177638 | 5177735 | 5177638 | ID=cds.MS.gene80027.t1;Parent=MS.gene80027.t1 |
chr6.1 | exon | 5178063 | 5178180 | 5178063 | ID=MS.gene80027.t1.exon6;Parent=MS.gene80027.t1 |
chr6.1 | CDS | 5178063 | 5178180 | 5178063 | ID=cds.MS.gene80027.t1;Parent=MS.gene80027.t1 |
chr6.1 | exon | 5178266 | 5178475 | 5178266 | ID=MS.gene80027.t1.exon7;Parent=MS.gene80027.t1 |
chr6.1 | CDS | 5178266 | 5178475 | 5178266 | ID=cds.MS.gene80027.t1;Parent=MS.gene80027.t1 |
chr6.1 | exon | 5180277 | 5180353 | 5180277 | ID=MS.gene80027.t1.exon8;Parent=MS.gene80027.t1 |
chr6.1 | CDS | 5180277 | 5180353 | 5180277 | ID=cds.MS.gene80027.t1;Parent=MS.gene80027.t1 |
chr6.1 | exon | 5184181 | 5184274 | 5184181 | ID=MS.gene80027.t1.exon9;Parent=MS.gene80027.t1 |
chr6.1 | CDS | 5184181 | 5184274 | 5184181 | ID=cds.MS.gene80027.t1;Parent=MS.gene80027.t1 |
chr6.1 | exon | 5185080 | 5185145 | 5185080 | ID=MS.gene80027.t1.exon10;Parent=MS.gene80027.t1 |
chr6.1 | CDS | 5185080 | 5185145 | 5185080 | ID=cds.MS.gene80027.t1;Parent=MS.gene80027.t1 |
chr6.1 | exon | 5185235 | 5185312 | 5185235 | ID=MS.gene80027.t1.exon11;Parent=MS.gene80027.t1 |
chr6.1 | CDS | 5185235 | 5185312 | 5185235 | ID=cds.MS.gene80027.t1;Parent=MS.gene80027.t1 |
chr6.1 | exon | 5185422 | 5185523 | 5185422 | ID=MS.gene80027.t1.exon12;Parent=MS.gene80027.t1 |
chr6.1 | CDS | 5185422 | 5185523 | 5185422 | ID=cds.MS.gene80027.t1;Parent=MS.gene80027.t1 |
Gene Sequence |
Protein sequence |