Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80057.t1 | XP_013469854.1 | 94.5 | 345 | 17 | 1 | 1 | 343 | 1 | 345 | 3.50E-185 | 657.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80057.t1 | A0A072VQ35 | 94.5 | 345 | 17 | 1 | 1 | 343 | 1 | 345 | 2.5e-185 | 657.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054468 | MS.gene80057 | 0.842019 | 3.34E-58 | -1.69E-46 |
MS.gene054581 | MS.gene80057 | 0.805265 | 1.45E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80057.t1 | MTR_1g103900 | 94.493 | 345 | 17 | 1 | 1 | 343 | 1 | 345 | 0.0 | 674 |
MS.gene80057.t1 | MTR_1g030720 | 91.667 | 348 | 27 | 1 | 1 | 346 | 1 | 348 | 0.0 | 655 |
MS.gene80057.t1 | MTR_1g030720 | 91.884 | 345 | 26 | 1 | 1 | 343 | 1 | 345 | 0.0 | 652 |
MS.gene80057.t1 | MTR_1g103870 | 79.710 | 345 | 67 | 2 | 1 | 343 | 1 | 344 | 0.0 | 567 |
MS.gene80057.t1 | MTR_1g103870 | 78.810 | 269 | 54 | 2 | 1 | 267 | 1 | 268 | 8.49e-153 | 431 |
MS.gene80057.t1 | MTR_1g030710 | 68.981 | 216 | 16 | 1 | 52 | 267 | 1 | 165 | 6.36e-96 | 283 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80057.t1 | AT3G54970 | 50.282 | 354 | 147 | 8 | 1 | 343 | 1 | 336 | 6.56e-110 | 325 |
MS.gene80057.t1 | AT3G54970 | 51.634 | 306 | 120 | 7 | 1 | 296 | 1 | 288 | 3.86e-96 | 288 |
MS.gene80057.t1 | AT3G54970 | 51.307 | 306 | 121 | 7 | 1 | 296 | 1 | 288 | 8.00e-96 | 287 |
MS.gene80057.t1 | AT3G54970 | 49.505 | 303 | 127 | 7 | 52 | 343 | 1 | 288 | 5.29e-87 | 265 |
MS.gene80057.t1 | AT3G54970 | 49.097 | 277 | 113 | 7 | 1 | 267 | 1 | 259 | 1.24e-77 | 239 |
MS.gene80057.t1 | AT3G54970 | 50.980 | 255 | 100 | 6 | 52 | 296 | 1 | 240 | 1.49e-73 | 229 |
Find 80 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGCTTCATGCTTGTTATTC+TGG | 0.142610 | 1.1:-74752148 | MS.gene80057:CDS |
TATACAAATTCTATCAAATT+TGG | 0.177330 | 1.1:-74752096 | MS.gene80057:CDS |
CATGGTCAGAACATGAAATT+TGG | 0.188468 | 1.1:-74749900 | MS.gene80057:CDS |
CCTTACCCAATCCGAATATT+TGG | 0.225225 | 1.1:+74751731 | None:intergenic |
GGTTGCGAAACTTGAAAATT+TGG | 0.242677 | 1.1:+74752020 | None:intergenic |
CTCTTTCTTGAAGCTAATTC+AGG | 0.266909 | 1.1:-74752285 | MS.gene80057:intron |
GCAACATGTTGATAGTATTC+AGG | 0.271626 | 1.1:-74749385 | MS.gene80057:CDS |
ATAAGTGATGGTGTTCTTCC+AGG | 0.321700 | 1.1:-74750599 | MS.gene80057:CDS |
GGAAGAACACCATCACTTAT+AGG | 0.322136 | 1.1:+74750602 | None:intergenic |
CATTTGGCTGTTGCGGGCTA+TGG | 0.328948 | 1.1:-74751771 | MS.gene80057:CDS |
TGCTTCATGCTTGTTATTCT+GGG | 0.340411 | 1.1:-74752147 | MS.gene80057:CDS |
CGTTGCAGCTGCCAAATATT+CGG | 0.343619 | 1.1:-74751742 | MS.gene80057:CDS |
CATTACAACTCTTGTTAATC+TGG | 0.352836 | 1.1:-74751913 | MS.gene80057:CDS |
TCGAGGAAATGGTGCACATT+TGG | 0.362170 | 1.1:-74751787 | MS.gene80057:CDS |
ACTTATGTTCCTCCTCAGTT+TGG | 0.388161 | 1.1:-74751813 | MS.gene80057:CDS |
GAGTAAATGCAGGGTGGACC+TGG | 0.395306 | 1.1:-74749230 | MS.gene80057:intron |
TACACTTGTGCAGGGTATGC+AGG | 0.400457 | 1.1:-74749957 | MS.gene80057:intron |
CAGTTTGGTATTCGAGGAAA+TGG | 0.404461 | 1.1:-74751798 | MS.gene80057:CDS |
GGTGCACATTTGGCTGTTGC+GGG | 0.405671 | 1.1:-74751777 | MS.gene80057:CDS |
GATGGAGAAACTTCTCGAAA+TGG | 0.410131 | 1.1:+74749922 | None:intergenic |
GAACTGTTGCTGTCTTATAA+TGG | 0.422884 | 1.1:-74751376 | MS.gene80057:CDS |
CCTCCTCAGTTTGGTATTCG+AGG | 0.437658 | 1.1:-74751804 | MS.gene80057:CDS |
TTCGAGAAGTTTCTCCATCA+TGG | 0.437777 | 1.1:-74749918 | MS.gene80057:CDS |
TAAAACTAATGTCAGGTTCA+AGG | 0.443792 | 1.1:-74752362 | None:intergenic |
AGCTGCCAAATATTCGGATT+GGG | 0.451002 | 1.1:-74751736 | MS.gene80057:CDS |
CAGCTGCCAAATATTCGGAT+TGG | 0.462251 | 1.1:-74751737 | MS.gene80057:CDS |
AGTTGTAATGGCCAGCTCCT+TGG | 0.462763 | 1.1:+74751926 | None:intergenic |
ATGGAGAAACTTCTCGAAAT+GGG | 0.462798 | 1.1:+74749923 | None:intergenic |
CCAAATATTCGGATTGGGTA+AGG | 0.463314 | 1.1:-74751731 | MS.gene80057:intron |
ATGGTCAGAACATGAAATTT+GGG | 0.465513 | 1.1:-74749899 | MS.gene80057:CDS |
ATTTGGCTGTTGCGGGCTAT+GGG | 0.468361 | 1.1:-74751770 | MS.gene80057:CDS |
TGGTGCACATTTGGCTGTTG+CGG | 0.478675 | 1.1:-74751778 | MS.gene80057:CDS |
CAGATTAACAAGAGTTGTAA+TGG | 0.483671 | 1.1:+74751914 | None:intergenic |
GACCCTCTCTTTCAATGCGA+TGG | 0.485431 | 1.1:+74751953 | None:intergenic |
GCTTCAAGAAAGAGTTTGAC+GGG | 0.491978 | 1.1:+74752294 | None:intergenic |
TCAAGGTTTCTCTTCAGTAA+TGG | 0.492959 | 1.1:-74752345 | MS.gene80057:CDS |
TGCTGCAAGTGTGCTGCCAC+TGG | 0.502984 | 1.1:-74752045 | MS.gene80057:CDS |
TTAACAAGCATCTGCAATGC+AGG | 0.511211 | 1.1:+74751999 | None:intergenic |
TGCAGGGTATGCAGGGATGA+AGG | 0.521268 | 1.1:-74749949 | MS.gene80057:intron |
GAGAAGGCTCCATGTGATCA+TGG | 0.523928 | 1.1:-74750656 | MS.gene80057:CDS |
GAGGGTCGATTCCAAGGAGC+TGG | 0.530821 | 1.1:-74751937 | MS.gene80057:CDS |
AAACGTGGAAGGATATATCA+TGG | 0.531561 | 1.1:-74749332 | MS.gene80057:CDS |
ATTTCATGTTCTGACCATGA+TGG | 0.532059 | 1.1:+74749904 | None:intergenic |
ACCCTCTCTTTCAATGCGAT+GGG | 0.533023 | 1.1:+74751954 | None:intergenic |
TTAGATTTAAACAAAAGTTG+TGG | 0.535919 | 1.1:+74752071 | None:intergenic |
TCAAAGATAAAACTAATGTC+AGG | 0.537281 | 1.1:-74752369 | None:intergenic |
ATGCAGGATTAGGAAGACTC+TGG | 0.538368 | 1.1:-74751425 | MS.gene80057:intron |
TGGGCTGATTGCCATTCTGT+TGG | 0.539164 | 1.1:+74749360 | None:intergenic |
TGTTAATGATTCAGTGGGGA+AGG | 0.549579 | 1.1:-74751982 | MS.gene80057:CDS |
ATGCTTGTTAATGATTCAGT+GGG | 0.549812 | 1.1:-74751987 | MS.gene80057:CDS |
GAAAGAGAGGGTCGATTCCA+AGG | 0.558115 | 1.1:-74751943 | MS.gene80057:CDS |
GATTATCACAACATTAATCC+AGG | 0.558554 | 1.1:-74749207 | MS.gene80057:intron |
AGCTTCAAGAAAGAGTTTGA+CGG | 0.558785 | 1.1:+74752293 | None:intergenic |
AGCAACAGTTCTGTTACTGA+TGG | 0.560687 | 1.1:+74751388 | None:intergenic |
ACACTTGTGCAGGGTATGCA+GGG | 0.560761 | 1.1:-74749956 | MS.gene80057:intron |
ATTAATGTTGTGATAATCCC+AGG | 0.561193 | 1.1:+74749212 | None:intergenic |
TGGCTGTTGCGGGCTATGGG+AGG | 0.565968 | 1.1:-74751767 | MS.gene80057:CDS |
TAAGTGATGGTGTTCTTCCA+GGG | 0.566670 | 1.1:-74750598 | MS.gene80057:CDS |
TTGGGATTCAGATGATGAGA+AGG | 0.566798 | 1.1:-74750672 | MS.gene80057:CDS |
ATGTCATTCCAGGTAGCTTG+AGG | 0.574242 | 1.1:-74749413 | MS.gene80057:intron |
GTATTCAGGTTCCAACAGAA+TGG | 0.575665 | 1.1:-74749371 | MS.gene80057:CDS |
ACTTGAAAATTTGGTGCCAG+TGG | 0.579774 | 1.1:+74752029 | None:intergenic |
AGTAAATGCAGGGTGGACCT+GGG | 0.591122 | 1.1:-74749229 | MS.gene80057:intron |
AGCCCATTCTAAAACGTGGA+AGG | 0.592336 | 1.1:-74749343 | MS.gene80057:CDS |
ACTAGTTGACGTATTATCCC+TGG | 0.595519 | 1.1:+74750581 | None:intergenic |
TGCCCATCGCATTGAAAGAG+AGG | 0.596482 | 1.1:-74751956 | MS.gene80057:CDS |
GAACATCTACAGTTTGTGAA+AGG | 0.597267 | 1.1:+74752319 | None:intergenic |
AACAGTTCTGTTACTGATGG+AGG | 0.598319 | 1.1:+74751391 | None:intergenic |
TACAACTCTTGTTAATCTGG+AGG | 0.605680 | 1.1:-74751910 | MS.gene80057:CDS |
CAGACAGCTCCTATAAGTGA+TGG | 0.617971 | 1.1:-74750611 | MS.gene80057:CDS |
GATGCTTGTTAATGATTCAG+TGG | 0.627074 | 1.1:-74751988 | MS.gene80057:CDS |
GCCCATCGCATTGAAAGAGA+GGG | 0.631250 | 1.1:-74751955 | MS.gene80057:CDS |
AATGGTGATCAAATACTCGA+AGG | 0.635890 | 1.1:-74751358 | MS.gene80057:CDS |
GTCAGAACATGAAATTTGGG+AGG | 0.642692 | 1.1:-74749896 | MS.gene80057:CDS |
CCTCGAATACCAAACTGAGG+AGG | 0.678182 | 1.1:+74751804 | None:intergenic |
AATCAGCCCATTCTAAAACG+TGG | 0.689169 | 1.1:-74749347 | MS.gene80057:CDS |
GTATGATGAGACTATGAGTG+AGG | 0.699298 | 1.1:-74751877 | MS.gene80057:CDS |
TCAAGAAAGAGTTTGACGGG+AGG | 0.714715 | 1.1:+74752297 | None:intergenic |
TTTCCTCGAATACCAAACTG+AGG | 0.731623 | 1.1:+74751801 | None:intergenic |
TGCTTGTTAATGATTCAGTG+GGG | 0.742138 | 1.1:-74751986 | MS.gene80057:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTAAAATTTGTATTGAT+TGG | + | chr1.1:74750743-74750762 | None:intergenic | 10.0% |
!!! | ATTTAAAATTTGTATTGATT+GGG | + | chr1.1:74750742-74750761 | None:intergenic | 10.0% |
!!! | TTCATTTTTTATTTCATATT+AGG | - | chr1.1:74750315-74750334 | MS.gene80057:intron | 10.0% |
!! | CATAAAATTAATATAAACGA+AGG | + | chr1.1:74751743-74751762 | None:intergenic | 15.0% |
!! | TATACAAATTCTATCAAATT+TGG | - | chr1.1:74748915-74748934 | MS.gene80057:intron | 15.0% |
!!! | TTATTTTATATTTCTTCATG+TGG | - | chr1.1:74750266-74750285 | MS.gene80057:intron | 15.0% |
!!! | TTGTACATATGTTATTTATT+GGG | + | chr1.1:74752261-74752280 | None:intergenic | 15.0% |
!!! | TTTTATTTCATATTAGGATT+GGG | - | chr1.1:74750321-74750340 | MS.gene80057:intron | 15.0% |
!!! | TTTTTATTTCATATTAGGAT+TGG | - | chr1.1:74750320-74750339 | MS.gene80057:intron | 15.0% |
!! | ATAAATCTATTTGTCAAATC+CGG | - | chr1.1:74750806-74750825 | MS.gene80057:intron | 20.0% |
!! | ATCCTATATAAATATGACAT+TGG | + | chr1.1:74750985-74751004 | None:intergenic | 20.0% |
!! | TATAAGAAAAAACAGGATAT+TGG | - | chr1.1:74749380-74749399 | MS.gene80057:CDS | 20.0% |
!! | TTAGATTTAAACAAAAGTTG+TGG | + | chr1.1:74748943-74748962 | None:intergenic | 20.0% |
!!! | AATAGTTTAAGATTGCAAAA+AGG | + | chr1.1:74751510-74751529 | None:intergenic | 20.0% |
!!! | ATATCCTGTTTTTTCTTATA+TGG | + | chr1.1:74749380-74749399 | None:intergenic | 20.0% |
!!! | ATGAAAACAAATAGCAATTT+TGG | + | chr1.1:74752200-74752219 | None:intergenic | 20.0% |
!!! | ATTACTTTCACATTTTGAAT+TGG | - | chr1.1:74751838-74751857 | MS.gene80057:CDS | 20.0% |
!!! | CTGAAATTTTATATTGTCAA+AGG | + | chr1.1:74749498-74749517 | None:intergenic | 20.0% |
!!! | CTTGTACATATGTTATTTAT+TGG | + | chr1.1:74752262-74752281 | None:intergenic | 20.0% |
!!! | GATAAAGGTTTTCAATAAAA+AGG | + | chr1.1:74749975-74749994 | None:intergenic | 20.0% |
!!! | TATCCTGTTTTTTCTTATAT+GGG | + | chr1.1:74749379-74749398 | None:intergenic | 20.0% |
!!! | TTACTTTCACATTTTGAATT+GGG | - | chr1.1:74751839-74751858 | MS.gene80057:CDS | 20.0% |
!!! | TTCTAATTATGTGTTTGTTT+TGG | - | chr1.1:74752019-74752038 | MS.gene80057:CDS | 20.0% |
!!! | TTTTGAAATGAACATTTCTA+CGG | + | chr1.1:74750883-74750902 | None:intergenic | 20.0% |
!!! | TTTTTCTTATATGGGATTTA+AGG | + | chr1.1:74749371-74749390 | None:intergenic | 20.0% |
! | AAACCAATAAAGTCTAGAAA+TGG | + | chr1.1:74750090-74750109 | None:intergenic | 25.0% |
! | AAGTAATGCATAAATTTACC+TGG | + | chr1.1:74751825-74751844 | None:intergenic | 25.0% |
! | AATCCCATATAAGAAAAAAC+AGG | - | chr1.1:74749373-74749392 | MS.gene80057:CDS | 25.0% |
! | ACACATAGTTACTAACAAAA+AGG | + | chr1.1:74749790-74749809 | None:intergenic | 25.0% |
! | CACATAGTTACTAACAAAAA+GGG | + | chr1.1:74749789-74749808 | None:intergenic | 25.0% |
! | CGCAAAAATATTATAAAACC+AGG | - | chr1.1:74750576-74750595 | MS.gene80057:CDS | 25.0% |
! | CTGCTAAAAATTTCAAGAAA+GGG | + | chr1.1:74750528-74750547 | None:intergenic | 25.0% |
! | GACCAATGTCATATTTATAT+AGG | - | chr1.1:74750980-74750999 | MS.gene80057:intron | 25.0% |
! | GTAAATGGATACATATATAG+TGG | + | chr1.1:74751899-74751918 | None:intergenic | 25.0% |
! | TAAATCTATTTGTCAAATCC+GGG | - | chr1.1:74750807-74750826 | MS.gene80057:intron | 25.0% |
! | TCACTCTAAGCAAATAATAA+TGG | + | chr1.1:74749445-74749464 | None:intergenic | 25.0% |
! | TCTGCTAAAAATTTCAAGAA+AGG | + | chr1.1:74750529-74750548 | None:intergenic | 25.0% |
! | TGAAATAAGCTTATGTGTTA+TGG | - | chr1.1:74750240-74750259 | MS.gene80057:intron | 25.0% |
!! | AGGTTTTCAATAAAAAGGTA+TGG | + | chr1.1:74749970-74749989 | None:intergenic | 25.0% |
!! | ATTCCATTTCTAGACTTTAT+TGG | - | chr1.1:74750084-74750103 | MS.gene80057:intron | 25.0% |
!! | CTAATATTTGGAATTTGTCT+TGG | - | chr1.1:74750857-74750876 | MS.gene80057:intron | 25.0% |
!! | CTTTAATTTCTAAAAGCAAC+GGG | - | chr1.1:74749879-74749898 | MS.gene80057:intron | 25.0% |
!! | GCTTTAATTTCTAAAAGCAA+CGG | - | chr1.1:74749878-74749897 | MS.gene80057:intron | 25.0% |
!! | TAGTAATGTTTTTCTTTGTC+AGG | - | chr1.1:74750915-74750934 | MS.gene80057:intron | 25.0% |
!! | TTTAGTGTAAAGCTTTTATG+AGG | + | chr1.1:74751261-74751280 | None:intergenic | 25.0% |
!! | TTTTCATCAGGAAAAGATTA+TGG | - | chr1.1:74752213-74752232 | MS.gene80057:intron | 25.0% |
!!! | AAAGAACTTTTTTGCAAAGT+TGG | + | chr1.1:74751214-74751233 | None:intergenic | 25.0% |
!!! | AAGAACTTTTTTGCAAAGTT+GGG | + | chr1.1:74751213-74751232 | None:intergenic | 25.0% |
!!! | AATTGCTATTTGTTTTCATC+AGG | - | chr1.1:74752201-74752220 | MS.gene80057:intron | 25.0% |
!!! | ATAACTTTTTTCTTCAATGC+AGG | - | chr1.1:74749570-74749589 | MS.gene80057:intron | 25.0% |
!!! | GATTTGACAAAGTATTTTGT+AGG | + | chr1.1:74748788-74748807 | None:intergenic | 25.0% |
!!! | TGCTTTTAGAAATTAAAGCA+TGG | + | chr1.1:74749877-74749896 | None:intergenic | 25.0% |
!!! | TTAAATTTTGTTTCCTACGA+TGG | - | chr1.1:74750756-74750775 | MS.gene80057:intron | 25.0% |
!!! | TTTTTATTTCCATGATCACA+TGG | + | chr1.1:74750367-74750386 | None:intergenic | 25.0% |
AAAGTTTATGCACTGAACTT+TGG | - | chr1.1:74749931-74749950 | MS.gene80057:CDS | 30.0% | |
AAGACCACAAACTTTGTAAA+TGG | + | chr1.1:74751914-74751933 | None:intergenic | 30.0% | |
AGTTGTCTTGACTTTAGTAA+TGG | - | chr1.1:74749472-74749491 | MS.gene80057:intron | 30.0% | |
ATGGACAAAAAAGCAATTTC+AGG | - | chr1.1:74751698-74751717 | MS.gene80057:intron | 30.0% | |
ATGGTCAGAACATGAAATTT+GGG | - | chr1.1:74751112-74751131 | MS.gene80057:intron | 30.0% | |
ATTAATGTTGTGATAATCCC+AGG | + | chr1.1:74751802-74751821 | None:intergenic | 30.0% | |
CAACGTGACAAACAAATAAT+AGG | + | chr1.1:74750038-74750057 | None:intergenic | 30.0% | |
CAATGTTAGGAAATATGACT+TGG | + | chr1.1:74752166-74752185 | None:intergenic | 30.0% | |
CAGATTAACAAGAGTTGTAA+TGG | + | chr1.1:74749100-74749119 | None:intergenic | 30.0% | |
CATTACAACTCTTGTTAATC+TGG | - | chr1.1:74749098-74749117 | MS.gene80057:intron | 30.0% | |
GAATAAACTAATCACACTCA+TGG | - | chr1.1:74751947-74751966 | MS.gene80057:CDS | 30.0% | |
GATAAAATAATCTCACCTTG+CGG | + | chr1.1:74749706-74749725 | None:intergenic | 30.0% | |
GATTATCACAACATTAATCC+AGG | - | chr1.1:74751804-74751823 | MS.gene80057:CDS | 30.0% | |
GGTAGTATAATTGCAATGTT+AGG | + | chr1.1:74752179-74752198 | None:intergenic | 30.0% | |
GTATCCATTTACAAAGTTTG+TGG | - | chr1.1:74751907-74751926 | MS.gene80057:CDS | 30.0% | |
TCCAAATATTAGTGAAAGCA+AGG | + | chr1.1:74750849-74750868 | None:intergenic | 30.0% | |
TCTCAATTTGAGTAAATGCA+GGG | - | chr1.1:74751772-74751791 | MS.gene80057:CDS | 30.0% | |
TGATGTTCATTCAGATTACT+AGG | - | chr1.1:74749546-74749565 | MS.gene80057:intron | 30.0% | |
TTAGAGAAAACCAAAAACAG+AGG | + | chr1.1:74751561-74751580 | None:intergenic | 30.0% | |
TTCTCAATTTGAGTAAATGC+AGG | - | chr1.1:74751771-74751790 | MS.gene80057:CDS | 30.0% | |
TTGTATTCTAATTCAGACTC+AGG | + | chr1.1:74749322-74749341 | None:intergenic | 30.0% | |
! | AATTGTCTGCTGATTGTTTA+TGG | - | chr1.1:74750670-74750689 | MS.gene80057:CDS | 30.0% |
! | ATGCTTGTTAATGATTCAGT+GGG | - | chr1.1:74749024-74749043 | MS.gene80057:intron | 30.0% |
! | ATTCATCACAAGTGTTATTG+AGG | - | chr1.1:74751176-74751195 | MS.gene80057:intron | 30.0% |
! | CAGATTTTTGTTCAAATCTC+AGG | + | chr1.1:74749824-74749843 | None:intergenic | 30.0% |
! | TACAAAATAGTTTTCTCGTG+AGG | + | chr1.1:74751389-74751408 | None:intergenic | 30.0% |
! | TACTTTGTCAAATCTTTTCC+TGG | - | chr1.1:74748794-74748813 | MS.gene80057:intron | 30.0% |
! | TCACATTTTGAATTGGGATT+GGG | - | chr1.1:74751845-74751864 | MS.gene80057:CDS | 30.0% |
! | TTCACATTTTGAATTGGGAT+TGG | - | chr1.1:74751844-74751863 | MS.gene80057:CDS | 30.0% |
! | TTTTTCTTCAATGCAGGATT+AGG | - | chr1.1:74749576-74749595 | MS.gene80057:intron | 30.0% |
! | TTTTTCTTTGTCAGGAAGAT+GGG | - | chr1.1:74750923-74750942 | MS.gene80057:intron | 30.0% |
!! | AGTTCTTTTGAAAATGTGAC+TGG | - | chr1.1:74751226-74751245 | MS.gene80057:intron | 30.0% |
!! | TTGTTTTTCTTCAACCACAA+AGG | - | chr1.1:74750495-74750514 | MS.gene80057:intron | 30.0% |
!!! | AGTTTTAAGAATTCCATCGT+AGG | + | chr1.1:74750772-74750791 | None:intergenic | 30.0% |
!!! | GTTTTCTCTAAAACTCACTT+GGG | - | chr1.1:74751570-74751589 | MS.gene80057:intron | 30.0% |
AAACGTGGAAGGATATATCA+TGG | - | chr1.1:74751679-74751698 | MS.gene80057:intron | 35.0% | |
AACAGGATATTGGTGAGTTA+AGG | - | chr1.1:74749390-74749409 | MS.gene80057:CDS | 35.0% | |
AATGGTGATCAAATACTCGA+AGG | - | chr1.1:74749653-74749672 | MS.gene80057:intron | 35.0% | |
ACATGATTTACACTTGTGCA+GGG | - | chr1.1:74751046-74751065 | MS.gene80057:intron | 35.0% | |
AGAAAATAGCAAGCACAAAC+AGG | - | chr1.1:74751005-74751024 | MS.gene80057:intron | 35.0% | |
AGATCTAAATCAATGGCTGA+GGG | - | chr1.1:74751290-74751309 | MS.gene80057:intron | 35.0% | |
AGCTTCAAGAAAGAGTTTGA+CGG | + | chr1.1:74748721-74748740 | None:intergenic | 35.0% | |
ATATAAACCAACCTACGAGT+GGG | + | chr1.1:74752330-74752349 | None:intergenic | 35.0% | |
ATGGAGAAACTTCTCGAAAT+GGG | + | chr1.1:74751091-74751110 | None:intergenic | 35.0% | |
ATTTCATGTTCTGACCATGA+TGG | + | chr1.1:74751110-74751129 | None:intergenic | 35.0% | |
CAAACAGACACATAAAAAGC+AGG | + | chr1.1:74750207-74750226 | None:intergenic | 35.0% | |
CAAGATTTCACAAGGCAAAA+TGG | - | chr1.1:74750171-74750190 | MS.gene80057:intron | 35.0% | |
CACTTTCTCAAGATTTCACA+AGG | - | chr1.1:74750163-74750182 | MS.gene80057:intron | 35.0% | |
CATGGTCAGAACATGAAATT+TGG | - | chr1.1:74751111-74751130 | MS.gene80057:intron | 35.0% | |
CCAAAGCAAATCGAAGATAA+AGG | + | chr1.1:74749990-74750009 | None:intergenic | 35.0% | |
CTCTTTCTTGAAGCTAATTC+AGG | - | chr1.1:74748726-74748745 | MS.gene80057:intron | 35.0% | |
GAACATCTACAGTTTGTGAA+AGG | + | chr1.1:74748695-74748714 | None:intergenic | 35.0% | |
GAACTGTTGCTGTCTTATAA+TGG | - | chr1.1:74749635-74749654 | MS.gene80057:intron | 35.0% | |
GACAAAAAAGCAATTTCAGG+TGG | - | chr1.1:74751701-74751720 | MS.gene80057:intron | 35.0% | |
GACTCCTAGATCTAAATCAA+TGG | - | chr1.1:74751283-74751302 | MS.gene80057:intron | 35.0% | |
GAGATATTGAGATAAAGTCC+TGG | + | chr1.1:74750597-74750616 | None:intergenic | 35.0% | |
GCCTTGCTTTCACTAATATT+TGG | - | chr1.1:74750845-74750864 | MS.gene80057:intron | 35.0% | |
GGTTGCGAAACTTGAAAATT+TGG | + | chr1.1:74748994-74749013 | None:intergenic | 35.0% | |
TACAACTCTTGTTAATCTGG+AGG | - | chr1.1:74749101-74749120 | MS.gene80057:intron | 35.0% | |
TAGATCTAAATCAATGGCTG+AGG | - | chr1.1:74751289-74751308 | MS.gene80057:intron | 35.0% | |
TATATAAACCAACCTACGAG+TGG | + | chr1.1:74752331-74752350 | None:intergenic | 35.0% | |
TCAAGGTTTCTCTTCAGTAA+TGG | - | chr1.1:74748666-74748685 | MS.gene80057:CDS | 35.0% | |
TTGAGAAAGTGAGCATCAAA+TGG | + | chr1.1:74750154-74750173 | None:intergenic | 35.0% | |
! | ACATTTTGAATTGGGATTGG+GGG | - | chr1.1:74751847-74751866 | MS.gene80057:CDS | 35.0% |
! | AGATTTCAGTCCTCTGTTTT+TGG | - | chr1.1:74751548-74751567 | MS.gene80057:intron | 35.0% |
! | ATGGAGAAAGCGATTTTTGA+AGG | - | chr1.1:74752232-74752251 | MS.gene80057:intron | 35.0% |
! | CACATTTTGAATTGGGATTG+GGG | - | chr1.1:74751846-74751865 | MS.gene80057:CDS | 35.0% |
! | CCTTTATCTTCGATTTGCTT+TGG | - | chr1.1:74749987-74750006 | MS.gene80057:intron | 35.0% |
! | GATGCTTGTTAATGATTCAG+TGG | - | chr1.1:74749023-74749042 | MS.gene80057:intron | 35.0% |
! | GTTTTTCTTTGTCAGGAAGA+TGG | - | chr1.1:74750922-74750941 | MS.gene80057:intron | 35.0% |
! | TACTAGCTTATCTACGAGTT+TGG | - | chr1.1:74751438-74751457 | MS.gene80057:intron | 35.0% |
! | TGCTTGTTAATGATTCAGTG+GGG | - | chr1.1:74749025-74749044 | MS.gene80057:intron | 35.0% |
! | TGGAGAAAGCGATTTTTGAA+GGG | - | chr1.1:74752233-74752252 | MS.gene80057:intron | 35.0% |
!! | AATTTGTATTGATTGGGCAG+AGG | + | chr1.1:74750736-74750755 | None:intergenic | 35.0% |
!! | ATGCTTCATGCTTGTTATTC+TGG | - | chr1.1:74748863-74748882 | MS.gene80057:intron | 35.0% |
!! | CTTTTTCATTATTTGCCGCA+AGG | - | chr1.1:74749688-74749707 | MS.gene80057:intron | 35.0% |
!! | GCAACATGTTGATAGTATTC+AGG | - | chr1.1:74751626-74751645 | MS.gene80057:intron | 35.0% |
!! | TCAGCCATTGATTTAGATCT+AGG | + | chr1.1:74751290-74751309 | None:intergenic | 35.0% |
!! | TGCTTCATGCTTGTTATTCT+GGG | - | chr1.1:74748864-74748883 | MS.gene80057:intron | 35.0% |
!! | TGGTCTTGTTTGTGTAAATG+TGG | - | chr1.1:74750690-74750709 | MS.gene80057:intron | 35.0% |
!!! | ATCCTTCCACGTTTTAGAAT+GGG | + | chr1.1:74751673-74751692 | None:intergenic | 35.0% |
!!! | ATCTTTTCCTGGTTTGTTTC+TGG | - | chr1.1:74748805-74748824 | MS.gene80057:intron | 35.0% |
!!! | GGTTTTCTCTAAAACTCACT+TGG | - | chr1.1:74751569-74751588 | MS.gene80057:intron | 35.0% |
!!! | TATCCTTCCACGTTTTAGAA+TGG | + | chr1.1:74751674-74751693 | None:intergenic | 35.0% |
AAAGTGAGCATCAAATGGTC+AGG | + | chr1.1:74750149-74750168 | None:intergenic | 40.0% | |
AACAGTTCTGTTACTGATGG+AGG | + | chr1.1:74749623-74749642 | None:intergenic | 40.0% | |
ACCTACGAGTGGGAAATATA+AGG | + | chr1.1:74752320-74752339 | None:intergenic | 40.0% | |
ACCTTATATTTCCCACTCGT+AGG | - | chr1.1:74752316-74752335 | MS.gene80057:CDS | 40.0% | |
ACTAGTTGACGTATTATCCC+TGG | + | chr1.1:74750433-74750452 | None:intergenic | 40.0% | |
ACTTATGTTCCTCCTCAGTT+TGG | - | chr1.1:74749198-74749217 | MS.gene80057:intron | 40.0% | |
AGCAACAGTTCTGTTACTGA+TGG | + | chr1.1:74749626-74749645 | None:intergenic | 40.0% | |
AGCTGCCAAATATTCGGATT+GGG | - | chr1.1:74749275-74749294 | MS.gene80057:intron | 40.0% | |
CAATTTGAGTAAATGCAGGG+TGG | - | chr1.1:74751775-74751794 | MS.gene80057:CDS | 40.0% | |
CAGTTTGGTATTCGAGGAAA+TGG | - | chr1.1:74749213-74749232 | MS.gene80057:CDS | 40.0% | |
CCTTACCCAATCCGAATATT+TGG | + | chr1.1:74749283-74749302 | None:intergenic | 40.0% | |
GAAGATCCTACTTCTTTGCT+GGG | - | chr1.1:74752284-74752303 | MS.gene80057:intron | 40.0% | |
GACATGATTTACACTTGTGC+AGG | - | chr1.1:74751045-74751064 | MS.gene80057:intron | 40.0% | |
GATGGAGAAACTTCTCGAAA+TGG | + | chr1.1:74751092-74751111 | None:intergenic | 40.0% | |
GCTTCAAGAAAGAGTTTGAC+GGG | + | chr1.1:74748720-74748739 | None:intergenic | 40.0% | |
GGAAGAACACCATCACTTAT+AGG | + | chr1.1:74750412-74750431 | None:intergenic | 40.0% | |
GTATGATGAGACTATGAGTG+AGG | - | chr1.1:74749134-74749153 | MS.gene80057:intron | 40.0% | |
GTCAGAACATGAAATTTGGG+AGG | - | chr1.1:74751115-74751134 | MS.gene80057:intron | 40.0% | |
TATATTTCCCACTCGTAGGT+TGG | - | chr1.1:74752320-74752339 | MS.gene80057:CDS | 40.0% | |
TCTATTTGTCAAATCCGGGT+AGG | - | chr1.1:74750811-74750830 | MS.gene80057:intron | 40.0% | |
TGAAGATCCTACTTCTTTGC+TGG | - | chr1.1:74752283-74752302 | MS.gene80057:intron | 40.0% | |
TGTTAATGATTCAGTGGGGA+AGG | - | chr1.1:74749029-74749048 | MS.gene80057:intron | 40.0% | |
TTAACAAGCATCTGCAATGC+AGG | + | chr1.1:74749015-74749034 | None:intergenic | 40.0% | |
TTCGAGAAGTTTCTCCATCA+TGG | - | chr1.1:74751093-74751112 | MS.gene80057:intron | 40.0% | |
TTGGGATCTAATGTCATTCC+AGG | - | chr1.1:74751588-74751607 | MS.gene80057:intron | 40.0% | |
TTGGGATTCAGATGATGAGA+AGG | - | chr1.1:74750339-74750358 | MS.gene80057:intron | 40.0% | |
TTTCCTCGAATACCAAACTG+AGG | + | chr1.1:74749213-74749232 | None:intergenic | 40.0% | |
! | ACAGGTTTTTCTCATGTGAC+TGG | - | chr1.1:74751023-74751042 | MS.gene80057:intron | 40.0% |
! | ATAAGTGATGGTGTTCTTCC+AGG | - | chr1.1:74750412-74750431 | MS.gene80057:intron | 40.0% |
! | CCAAATATTCGGATTGGGTA+AGG | - | chr1.1:74749280-74749299 | MS.gene80057:intron | 40.0% |
! | GTATTCAGGTTCCAACAGAA+TGG | - | chr1.1:74751640-74751659 | MS.gene80057:intron | 40.0% |
! | TAAGTGATGGTGTTCTTCCA+GGG | - | chr1.1:74750413-74750432 | MS.gene80057:intron | 40.0% |
! | TACTTTTCTAGACCACAGTC+TGG | + | chr1.1:74751333-74751352 | None:intergenic | 40.0% |
! | TCTTAAAAGCACGTTCATGG+TGG | + | chr1.1:74752052-74752071 | None:intergenic | 40.0% |
!! | AATCAGCCCATTCTAAAACG+TGG | - | chr1.1:74751664-74751683 | MS.gene80057:intron | 40.0% |
!! | ACTTGAAAATTTGGTGCCAG+TGG | + | chr1.1:74748985-74749004 | None:intergenic | 40.0% |
ACCCTCTCTTTCAATGCGAT+GGG | + | chr1.1:74749060-74749079 | None:intergenic | 45.0% | |
ATGCAGGATTAGGAAGACTC+TGG | - | chr1.1:74749586-74749605 | MS.gene80057:intron | 45.0% | |
ATGTCATTCCAGGTAGCTTG+AGG | - | chr1.1:74751598-74751617 | MS.gene80057:intron | 45.0% | |
ATGTGTACTGAACGTGCGTT+TGG | + | chr1.1:74752122-74752141 | None:intergenic | 45.0% | |
ATTAAGTCACCACCAGACTG+TGG | - | chr1.1:74751318-74751337 | MS.gene80057:intron | 45.0% | |
CAGACAGCTCCTATAAGTGA+TGG | - | chr1.1:74750400-74750419 | MS.gene80057:intron | 45.0% | |
CAGCTGCCAAATATTCGGAT+TGG | - | chr1.1:74749274-74749293 | MS.gene80057:intron | 45.0% | |
CGTCAACTAGTGCTTGAGTA+TGG | - | chr1.1:74750442-74750461 | MS.gene80057:intron | 45.0% | |
CGTTGCAGCTGCCAAATATT+CGG | - | chr1.1:74749269-74749288 | MS.gene80057:intron | 45.0% | |
CTACATCCCAGCAAAGAAGT+AGG | + | chr1.1:74752293-74752312 | None:intergenic | 45.0% | |
GTGAAAGCAAGGCTCTCTTA+TGG | + | chr1.1:74750838-74750857 | None:intergenic | 45.0% | |
TCAAGAAAGAGTTTGACGGG+AGG | + | chr1.1:74748717-74748736 | None:intergenic | 45.0% | |
TCCAACCACGTTTAGGTGTT+AGG | + | chr1.1:74749850-74749869 | None:intergenic | 45.0% | |
TCGAGGAAATGGTGCACATT+TGG | - | chr1.1:74749224-74749243 | MS.gene80057:intron | 45.0% | |
TGGACAATCCAACCACGTTT+AGG | + | chr1.1:74749857-74749876 | None:intergenic | 45.0% | |
TGTTGCCTAACACCTAAACG+TGG | - | chr1.1:74749842-74749861 | MS.gene80057:intron | 45.0% | |
TTTGAATTGGGATTGGGGGA+GGG | - | chr1.1:74751851-74751870 | MS.gene80057:CDS | 45.0% | |
! | CGCTCTTAAAAGCACGTTCA+TGG | + | chr1.1:74752055-74752074 | None:intergenic | 45.0% |
! | GAAAGGGCATAGTTCCTTTG+TGG | + | chr1.1:74750512-74750531 | None:intergenic | 45.0% |
! | TTTTCTAGACCACAGTCTGG+TGG | + | chr1.1:74751330-74751349 | None:intergenic | 45.0% |
! | TTTTGAATTGGGATTGGGGG+AGG | - | chr1.1:74751850-74751869 | MS.gene80057:CDS | 45.0% |
!! | AGCCCATTCTAAAACGTGGA+AGG | - | chr1.1:74751668-74751687 | MS.gene80057:intron | 45.0% |
!! | TGACTTGGTGCCTGTTTGTT+TGG | + | chr1.1:74752151-74752170 | None:intergenic | 45.0% |
!!! | ACGTGCTTTTAAGAGCGCTT+TGG | - | chr1.1:74752058-74752077 | MS.gene80057:CDS | 45.0% |
!!! | TAATTTATTTCTATAATTTT+TGG | + | chr1.1:74750960-74750979 | None:intergenic | 5.0% |
ACACTTGTGCAGGGTATGCA+GGG | - | chr1.1:74751055-74751074 | MS.gene80057:intron | 50.0% | |
ACATCAGCACTACAAGCAGC+AGG | + | chr1.1:74749532-74749551 | None:intergenic | 50.0% | |
ACATCCACCGCCAAACAAAC+AGG | - | chr1.1:74752138-74752157 | MS.gene80057:CDS | 50.0% | |
ACCTGGACCAGAAACAAACC+AGG | + | chr1.1:74748815-74748834 | None:intergenic | 50.0% | |
AGTAAATGCAGGGTGGACCT+GGG | - | chr1.1:74751782-74751801 | MS.gene80057:CDS | 50.0% | |
AGTTGTAATGGCCAGCTCCT+TGG | + | chr1.1:74749088-74749107 | None:intergenic | 50.0% | |
CCTCCTCAGTTTGGTATTCG+AGG | - | chr1.1:74749207-74749226 | MS.gene80057:intron | 50.0% | |
CCTCGAATACCAAACTGAGG+AGG | + | chr1.1:74749210-74749229 | None:intergenic | 50.0% | |
GACCCTCTCTTTCAATGCGA+TGG | + | chr1.1:74749061-74749080 | None:intergenic | 50.0% | |
GAGAAGGCTCCATGTGATCA+TGG | - | chr1.1:74750355-74750374 | MS.gene80057:intron | 50.0% | |
GCCCATCGCATTGAAAGAGA+GGG | - | chr1.1:74749056-74749075 | MS.gene80057:intron | 50.0% | |
GCCTAACACCTAAACGTGGT+TGG | - | chr1.1:74749846-74749865 | MS.gene80057:intron | 50.0% | |
TACACTTGTGCAGGGTATGC+AGG | - | chr1.1:74751054-74751073 | MS.gene80057:intron | 50.0% | |
TGCAAAAGCCTCAAGCTACC+TGG | + | chr1.1:74751609-74751628 | None:intergenic | 50.0% | |
TGCCCATCGCATTGAAAGAG+AGG | - | chr1.1:74749055-74749074 | MS.gene80057:intron | 50.0% | |
TGGGCTGATTGCCATTCTGT+TGG | + | chr1.1:74751654-74751673 | None:intergenic | 50.0% | |
TGGTGCACATTTGGCTGTTG+CGG | - | chr1.1:74749233-74749252 | MS.gene80057:intron | 50.0% | |
! | ATTTGGCTGTTGCGGGCTAT+GGG | - | chr1.1:74749241-74749260 | MS.gene80057:intron | 50.0% |
! | GAAAGAGAGGGTCGATTCCA+AGG | - | chr1.1:74749068-74749087 | MS.gene80057:intron | 50.0% |
!! | CTTGGTGCCTGTTTGTTTGG+CGG | + | chr1.1:74752148-74752167 | None:intergenic | 50.0% |
!! | TCCTGGTTTGTTTCTGGTCC+AGG | - | chr1.1:74748811-74748830 | MS.gene80057:intron | 50.0% |
CGTGATGTCGTGTAAGCACC+TGG | + | chr1.1:74748832-74748851 | None:intergenic | 55.0% | |
GAGTAAATGCAGGGTGGACC+TGG | - | chr1.1:74751781-74751800 | MS.gene80057:CDS | 55.0% | |
GGCTCTCTTATGGACCTACC+CGG | + | chr1.1:74750828-74750847 | None:intergenic | 55.0% | |
GGTGCACATTTGGCTGTTGC+GGG | - | chr1.1:74749234-74749253 | MS.gene80057:intron | 55.0% | |
TGCAGGGTATGCAGGGATGA+AGG | - | chr1.1:74751062-74751081 | MS.gene80057:intron | 55.0% | |
! | CATTTGGCTGTTGCGGGCTA+TGG | - | chr1.1:74749240-74749259 | MS.gene80057:intron | 55.0% |
GGTGCCTGTTTGTTTGGCGG+TGG | + | chr1.1:74752145-74752164 | None:intergenic | 60.0% | |
TGCTGCAAGTGTGCTGCCAC+TGG | - | chr1.1:74748966-74748985 | MS.gene80057:intron | 60.0% | |
! | GAGGGTCGATTCCAAGGAGC+TGG | - | chr1.1:74749074-74749093 | MS.gene80057:intron | 60.0% |
! | TGGCTGTTGCGGGCTATGGG+AGG | - | chr1.1:74749244-74749263 | MS.gene80057:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 74748657 | 74752376 | 74748657 | ID=MS.gene80057 |
chr1.1 | mRNA | 74748657 | 74752376 | 74748657 | ID=MS.gene80057.t1;Parent=MS.gene80057 |
chr1.1 | exon | 74752286 | 74752376 | 74752286 | ID=MS.gene80057.t1.exon1;Parent=MS.gene80057.t1 |
chr1.1 | CDS | 74752286 | 74752376 | 74752286 | ID=cds.MS.gene80057.t1;Parent=MS.gene80057.t1 |
chr1.1 | exon | 74751732 | 74752200 | 74751732 | ID=MS.gene80057.t1.exon2;Parent=MS.gene80057.t1 |
chr1.1 | CDS | 74751732 | 74752200 | 74751732 | ID=cds.MS.gene80057.t1;Parent=MS.gene80057.t1 |
chr1.1 | exon | 74751324 | 74751441 | 74751324 | ID=MS.gene80057.t1.exon3;Parent=MS.gene80057.t1 |
chr1.1 | CDS | 74751324 | 74751441 | 74751324 | ID=cds.MS.gene80057.t1;Parent=MS.gene80057.t1 |
chr1.1 | exon | 74750575 | 74750696 | 74750575 | ID=MS.gene80057.t1.exon4;Parent=MS.gene80057.t1 |
chr1.1 | CDS | 74750575 | 74750696 | 74750575 | ID=cds.MS.gene80057.t1;Parent=MS.gene80057.t1 |
chr1.1 | exon | 74749881 | 74749966 | 74749881 | ID=MS.gene80057.t1.exon5;Parent=MS.gene80057.t1 |
chr1.1 | CDS | 74749881 | 74749966 | 74749881 | ID=cds.MS.gene80057.t1;Parent=MS.gene80057.t1 |
chr1.1 | exon | 74749314 | 74749423 | 74749314 | ID=MS.gene80057.t1.exon6;Parent=MS.gene80057.t1 |
chr1.1 | CDS | 74749314 | 74749423 | 74749314 | ID=cds.MS.gene80057.t1;Parent=MS.gene80057.t1 |
chr1.1 | exon | 74749208 | 74749240 | 74749208 | ID=MS.gene80057.t1.exon7;Parent=MS.gene80057.t1 |
chr1.1 | CDS | 74749208 | 74749240 | 74749208 | ID=cds.MS.gene80057.t1;Parent=MS.gene80057.t1 |
chr1.1 | exon | 74748657 | 74748695 | 74748657 | ID=MS.gene80057.t1.exon8;Parent=MS.gene80057.t1 |
chr1.1 | CDS | 74748657 | 74748695 | 74748657 | ID=cds.MS.gene80057.t1;Parent=MS.gene80057.t1 |
Gene Sequence |
Protein sequence |