AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80096


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80096.t1 MTR_5g053250 95.714 140 6 0 2 141 4 143 7.80e-83 246
MS.gene80096.t1 MTR_5g053250 80.240 167 6 1 2 141 4 170 1.42e-76 231
MS.gene80096.t1 MTR_5g053250 95.181 83 4 0 59 141 1 83 9.62e-51 162
MS.gene80096.t1 MTR_6g017105 39.706 136 77 3 1 135 1 132 2.65e-23 93.2
MS.gene80096.t1 MTR_1g100643 40.000 140 76 4 1 138 1 134 1.19e-22 91.3
MS.gene80096.t1 MTR_1g033360 37.405 131 75 3 14 142 15 140 5.95e-21 86.7
MS.gene80096.t1 MTR_1g100643 44.444 81 44 1 59 138 1 81 3.60e-15 70.5
MS.gene80096.t1 MTR_1g033390 31.008 129 84 4 14 141 9 133 2.01e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80096.t1 AT1G26100 59.859 142 46 1 1 142 1 131 6.27e-51 164
MS.gene80096.t1 AT5G38630 44.275 131 64 5 9 136 9 133 1.21e-26 102
MS.gene80096.t1 AT4G25570 38.806 134 77 3 9 141 49 178 1.54e-23 94.7
MS.gene80096.t1 AT4G25570 38.806 134 77 3 9 141 8 137 2.40e-23 93.6
MS.gene80096.t1 AT1G14730 29.861 144 91 4 14 152 20 158 6.86e-12 62.4

Find 58 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTAGCTTCTGGGATATT+TGG 0.112597 5.1:+42339889 MS.gene80096:CDS
TAGCATTTCTTGTTCTCTTC+TGG 0.118815 5.1:+42339449 MS.gene80096:CDS
CAAGGGGTGGCTTTAGCTTC+TGG 0.175443 5.1:+42339880 MS.gene80096:CDS
GAATGTTTGTGCAGCAATTT+TGG 0.224729 5.1:+42339801 MS.gene80096:intron
TTACCTTGGCATGTATTTCT+TGG 0.229367 5.1:+42341694 MS.gene80096:CDS
CTTTAGCTTCTGGGATATTT+GGG 0.267158 5.1:+42339890 MS.gene80096:CDS
CTTCTGGGATATTTGGGATT+TGG 0.279862 5.1:+42339896 MS.gene80096:CDS
TCCTGTTGAGGAAGAGAATT+AGG 0.298620 5.1:-42339505 None:intergenic
ATTTCTACAGCCTTCATTCA+TGG 0.299138 5.1:+42339953 MS.gene80096:CDS
CTCTTTCTTGCGAGAGTTTG+TGG 0.301862 5.1:+42339418 MS.gene80096:CDS
GCAGTGGCTTCTTGAACTTT+TGG 0.301868 5.1:+42341635 MS.gene80096:intron
AAGGGGTGGCTTTAGCTTCT+GGG 0.303519 5.1:+42339881 MS.gene80096:CDS
AGCATTTCTTGTTCTCTTCT+GGG 0.319777 5.1:+42339450 MS.gene80096:CDS
TACTACCTTCTCCACTTAAA+AGG 0.321243 5.1:-42339668 None:intergenic
CCACAATCCCATCATTTACT+TGG 0.326307 5.1:-42339927 None:intergenic
CATCCTGTGCTCATGGTCAT+TGG 0.339718 5.1:+42339639 MS.gene80096:CDS
TCTTGTTCTCTTCTGGGCTC+TGG 0.357755 5.1:+42339456 MS.gene80096:CDS
GCAGTAGCAACGGCGGAAAC+TGG 0.361598 5.1:+42341736 MS.gene80096:CDS
TGTATCCCTCTTTGAAGCTC+AGG 0.397102 5.1:+42339990 MS.gene80096:CDS
TCCTAATTCTCTTCCTCAAC+AGG 0.404001 5.1:+42339504 MS.gene80096:CDS
TAGATGGTTGCCTGGGTCAA+GGG 0.416984 5.1:+42339828 MS.gene80096:CDS
CTGCCAATGCATAAGTGTAT+AGG 0.426996 5.1:-42341717 None:intergenic
ACAAAATTCCAAGTAAATGA+TGG 0.437217 5.1:+42339919 MS.gene80096:CDS
TACAGCCTTCATTCATGGAT+GGG 0.445813 5.1:+42339958 MS.gene80096:CDS
CATGGACTCAGTGCTGTGTT+TGG 0.448440 5.1:-42341803 None:intergenic
ATAGATGGTTGCCTGGGTCA+AGG 0.449560 5.1:+42339827 MS.gene80096:CDS
GAAGAGAATTAGGAGTATTG+AGG 0.459271 5.1:-42339495 None:intergenic
AAATGCGATCAGTGAGGATA+AGG 0.461868 5.1:+42341668 MS.gene80096:CDS
TCGGTGCATTTATGTCTTCA+AGG 0.466772 5.1:+42339862 MS.gene80096:CDS
TTGGTGCATAGATGGTTGCC+TGG 0.471390 5.1:+42339820 MS.gene80096:CDS
GGTTCTCCATCCTGTGCTCA+TGG 0.477323 5.1:+42339632 MS.gene80096:intron
CTACAGCCTTCATTCATGGA+TGG 0.480089 5.1:+42339957 MS.gene80096:CDS
AGATGGTTGCCTGGGTCAAG+GGG 0.483244 5.1:+42339829 MS.gene80096:CDS
AAGAGCAAAGGGAGTAGTGA+GGG 0.491250 5.1:-42339400 None:intergenic
CTCTCGCAAGAAAGAGCAAA+GGG 0.500913 5.1:-42339411 None:intergenic
CGGTGCATTTATGTCTTCAA+GGG 0.507370 5.1:+42339863 MS.gene80096:CDS
CAAAATTCCAAGTAAATGAT+GGG 0.535853 5.1:+42339920 MS.gene80096:CDS
CCAAGTAAATGATGGGATTG+TGG 0.538655 5.1:+42339927 MS.gene80096:CDS
TCAAACCCATCCATGAATGA+AGG 0.539092 5.1:-42339963 None:intergenic
GCATTTATGTCTTCAAGGGG+TGG 0.549961 5.1:+42339867 MS.gene80096:CDS
TGGCCTATACACTTATGCAT+TGG 0.552843 5.1:+42341714 MS.gene80096:CDS
TCACTGATCGCATTTCTCCT+CGG 0.562616 5.1:-42341660 None:intergenic
AGGCCAAGAAATACATGCCA+AGG 0.572983 5.1:-42341697 None:intergenic
TGGTGCATAGATGGTTGCCT+GGG 0.586545 5.1:+42339821 MS.gene80096:CDS
TTATGCATTGGCAGTAGCAA+CGG 0.591173 5.1:+42341726 MS.gene80096:CDS
AATCCAATGACCATGAGCAC+AGG 0.602677 5.1:-42339642 None:intergenic
TACTCACCTGAGCTTCAAAG+AGG 0.613059 5.1:-42339996 None:intergenic
CAATGACCATGAGCACAGGA+TGG 0.614301 5.1:-42339638 None:intergenic
TGAGGATAAGGATCTTACCT+TGG 0.620818 5.1:+42341680 MS.gene80096:CDS
GATGGTTGCCTGGGTCAAGG+GGG 0.624454 5.1:+42339830 MS.gene80096:CDS
ACTCTCGCAAGAAAGAGCAA+AGG 0.634673 5.1:-42339412 None:intergenic
ACTCACCTGAGCTTCAAAGA+GGG 0.638153 5.1:-42339995 None:intergenic
TGCATTGGCAGTAGCAACGG+CGG 0.640059 5.1:+42341729 MS.gene80096:CDS
GGTGCATTTATGTCTTCAAG+GGG 0.646132 5.1:+42339864 MS.gene80096:CDS
AAAGAGCAAAGGGAGTAGTG+AGG 0.647530 5.1:-42339401 None:intergenic
GCATAGATGAGATCCTGTTG+AGG 0.669004 5.1:-42339517 None:intergenic
GAGTAGTGAGGGAAAGACAG+TGG 0.669481 5.1:-42339389 None:intergenic
GAGGAGAAATGCGATCAGTG+AGG 0.738861 5.1:+42341662 MS.gene80096:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTTGATAAAAACTAA+AGG + chr5.1:42340230-42340249 MS.gene80096:intron 10.0%
!! AATAATTTGATAAAAACTAA+AGG - chr5.1:42340249-42340230 None:intergenic 10.0%
!! TTGATGTAATTAAATAAAAA+GGG - chr5.1:42339573-42339592 None:intergenic 10.0%
!! TTTGATGTAATTAAATAAAA+AGG - chr5.1:42339574-42339593 None:intergenic 10.0%
!!! TTCTAAATTAATTTTTACTT+AGG + chr5.1:42340057-42340076 MS.gene80096:intron 10.0%
!!! TTTAATTTTAATTTAATTGC+AGG + chr5.1:42339611-42339630 MS.gene80096:intron 10.0%
!! GATAATAACAATTCATAATT+GGG - chr5.1:42341293-42341312 None:intergenic 15.0%
!! TGATAATAACAATTCATAAT+TGG - chr5.1:42341294-42341313 None:intergenic 15.0%
!! AAATATTATGTATTGGGATT+AGG + chr5.1:42339711-42339730 MS.gene80096:intron 20.0%
!! AACCCAAAAATATTATGTAT+TGG + chr5.1:42339704-42339723 MS.gene80096:intron 20.0%
!! AATACATGTATGTTAATTGA+TGG + chr5.1:42340132-42340151 MS.gene80096:intron 20.0%
!! ACACAATTAATTTCTATCAA+TGG - chr5.1:42341368-42341387 None:intergenic 20.0%
!! ACCCAAAAATATTATGTATT+GGG + chr5.1:42339705-42339724 MS.gene80096:intron 20.0%
!! AGCAACTAAATTGAAATAAA+AGG - chr5.1:42341223-42341242 None:intergenic 20.0%
!! TAATGAAATCAAGTCATTAT+TGG + chr5.1:42339744-42339763 MS.gene80096:intron 20.0%
!!! ATCCCAATACATAATATTTT+TGG - chr5.1:42339710-42339729 None:intergenic 20.0%
!!! GCAAAATTCTTTTATGTATA+TGG + chr5.1:42341559-42341578 MS.gene80096:intron 20.0%
!!! TATGTTAACTGATGTATTTT+TGG + chr5.1:42340927-42340946 MS.gene80096:intron 20.0%
!!! TCCCAATACATAATATTTTT+GGG - chr5.1:42339709-42339728 None:intergenic 20.0%
! AAAGGATAACAATAAGAAAC+TGG - chr5.1:42341205-42341224 None:intergenic 25.0%
! AACAATAAGAAACTGGAATT+TGG - chr5.1:42341198-42341217 None:intergenic 25.0%
! AATGCATATATGTTAAGTGA+TGG - chr5.1:42340675-42340694 None:intergenic 25.0%
! ACAAAATTCCAAGTAAATGA+TGG + chr5.1:42339919-42339938 MS.gene80096:CDS 25.0%
! ATTTCTCACAATTTAAGTGA+GGG + chr5.1:42340874-42340893 MS.gene80096:intron 25.0%
! CAAAATTCCAAGTAAATGAT+GGG + chr5.1:42339920-42339939 MS.gene80096:CDS 25.0%
! TATTTCTCACAATTTAAGTG+AGG + chr5.1:42340873-42340892 MS.gene80096:intron 25.0%
! TTAATTGATTGCGATATTGT+CGG - chr5.1:42340700-42340719 None:intergenic 25.0%
! TTGATTGATTGTGATATTGT+TGG - chr5.1:42340806-42340825 None:intergenic 25.0%
!! ATTGGATTTATCCTTTTAAG+TGG + chr5.1:42339657-42339676 MS.gene80096:CDS 25.0%
!! TATGTTGATTGATTGTGATA+TGG - chr5.1:42340777-42340796 None:intergenic 25.0%
!! TTTTATGGTGAACTTTACAA+TGG - chr5.1:42340305-42340324 None:intergenic 25.0%
!!! TGAGAGTGTATTGTTTTTTA+TGG - chr5.1:42340506-42340487 None:intergenic 25.0%
!!! TTAATTGATGGTGATTTTGT+TGG + chr5.1:42340144-42340163 MS.gene80096:intron 25.0%
AAAGGGAATGAAGAAAATAG+AGG - chr5.1:42339556-42339575 None:intergenic 30.0%
ATCAGGACATACATGAATAA+AGG - chr5.1:42341249-42341268 None:intergenic 30.0%
ATGACTTAAATTGGAGATAG+AGG + chr5.1:42340447-42340466 MS.gene80096:intron 30.0%
ATGACTTAAATTGGAGATAG+AGG - chr5.1:42340466-42340447 None:intergenic 30.0%
ATTTAAGTCATGGCAAAAGT+AGG + chr5.1:42340369-42340388 MS.gene80096:intron 30.0%
ATTTAAGTCATGGCAAAAGT+AGG - chr5.1:42340388-42340369 None:intergenic 30.0%
TACTTACTGTATACATAGTG+TGG - chr5.1:42340909-42340928 None:intergenic 30.0%
TATATGCACAGCAATAACAA+GGG - chr5.1:42341400-42341419 None:intergenic 30.0%
TCAGGACATACATGAATAAA+GGG - chr5.1:42341248-42341267 None:intergenic 30.0%
TCTATCTCCAATTTAAGTCA+TGG + chr5.1:42340359-42340378 MS.gene80096:intron 30.0%
TCTATCTCCAATTTAAGTCA+TGG - chr5.1:42340378-42340359 None:intergenic 30.0%
TTATATGCACAGCAATAACA+AGG - chr5.1:42341401-42341420 None:intergenic 30.0%
TTGATTGATTGCGATATTGT+CGG - chr5.1:42340736-42340755 None:intergenic 30.0%
TTGATTGATTGTGATATGGT+TGG - chr5.1:42340773-42340792 None:intergenic 30.0%
TTTCTCACAATTTAAGTGAG+GGG + chr5.1:42340875-42340894 MS.gene80096:intron 30.0%
! ACTTTTGCCATGACTTAAAT+TGG + chr5.1:42340438-42340457 MS.gene80096:intron 30.0%
! ACTTTTGCCATGACTTAAAT+TGG - chr5.1:42340457-42340438 None:intergenic 30.0%
! TGAATTGTTATTATCACCAC+TGG + chr5.1:42341298-42341317 MS.gene80096:intron 30.0%
!! TTAAGTGATGGAGATTTTGT+TGG - chr5.1:42340663-42340682 None:intergenic 30.0%
!! TTTATCCTTTTAAGTGGAGA+AGG + chr5.1:42339663-42339682 MS.gene80096:CDS 30.0%
AATCGCTACGTGAATTCAAA+TGG - chr5.1:42341168-42341187 None:intergenic 35.0%
AGCATTTCTTGTTCTCTTCT+GGG + chr5.1:42339450-42339469 MS.gene80096:CDS 35.0%
ATATGCACAGCAATAACAAG+GGG - chr5.1:42341399-42341418 None:intergenic 35.0%
ATTTCTACAGCCTTCATTCA+TGG + chr5.1:42339953-42339972 MS.gene80096:CDS 35.0%
CAACATGTTGAACTTCGTTA+TGG - chr5.1:42341611-42341630 None:intergenic 35.0%
CAGGACATACATGAATAAAG+GGG - chr5.1:42341247-42341266 None:intergenic 35.0%
GCAAAAGTAGGAATTAGTGT+TGG + chr5.1:42340381-42340400 MS.gene80096:intron 35.0%
GCAAAAGTAGGAATTAGTGT+TGG - chr5.1:42340400-42340381 None:intergenic 35.0%
GGAAATTGTAAACTAGTGTG+AGG + chr5.1:42341441-42341460 MS.gene80096:intron 35.0%
TACTACCTTCTCCACTTAAA+AGG - chr5.1:42339671-42339690 None:intergenic 35.0%
TAGCATTTCTTGTTCTCTTC+TGG + chr5.1:42339449-42339468 MS.gene80096:CDS 35.0%
TGGAGATAGAGGAAAAAAGA+AGG + chr5.1:42340458-42340477 MS.gene80096:intron 35.0%
TGGAGATAGAGGAAAAAAGA+AGG - chr5.1:42340477-42340458 None:intergenic 35.0%
TTACCTTGGCATGTATTTCT+TGG + chr5.1:42341694-42341713 MS.gene80096:CDS 35.0%
! GAATGTTTGTGCAGCAATTT+TGG + chr5.1:42339801-42339820 MS.gene80096:intron 35.0%
! TAACTAACGCATGGGTATTT+TGG - chr5.1:42341064-42341083 None:intergenic 35.0%
!! CTTTAGCTTCTGGGATATTT+GGG + chr5.1:42339890-42339909 MS.gene80096:CDS 35.0%
!! GAAGAGAATTAGGAGTATTG+AGG - chr5.1:42339498-42339517 None:intergenic 35.0%
!!! GTATTTTGGTCAGTTTGACT+GGG - chr5.1:42341050-42341069 None:intergenic 35.0%
AAATGCGATCAGTGAGGATA+AGG + chr5.1:42341668-42341687 MS.gene80096:CDS 40.0%
CCACAATCCCATCATTTACT+TGG - chr5.1:42339930-42339949 None:intergenic 40.0%
CGGTGCATTTATGTCTTCAA+GGG + chr5.1:42339863-42339882 MS.gene80096:CDS 40.0%
CTGCCAATGCATAAGTGTAT+AGG - chr5.1:42341720-42341739 None:intergenic 40.0%
GCGTTAGTTAACTAACGCAA+GGG + chr5.1:42341488-42341507 MS.gene80096:intron 40.0%
GCGTTAGTTAACTAACGCAT+GGG - chr5.1:42341072-42341091 None:intergenic 40.0%
GGTGCATTTATGTCTTCAAG+GGG + chr5.1:42339864-42339883 MS.gene80096:CDS 40.0%
TACAGCCTTCATTCATGGAT+GGG + chr5.1:42339958-42339977 MS.gene80096:CDS 40.0%
TCAAAAAGTCAAGCCTTGCA+CGG - chr5.1:42341336-42341355 None:intergenic 40.0%
TCAAACCCATCCATGAATGA+AGG - chr5.1:42339966-42339985 None:intergenic 40.0%
TCCTAATTCTCTTCCTCAAC+AGG + chr5.1:42339504-42339523 MS.gene80096:CDS 40.0%
TCCTGTTGAGGAAGAGAATT+AGG - chr5.1:42339508-42339527 None:intergenic 40.0%
TCGGTGCATTTATGTCTTCA+AGG + chr5.1:42339862-42339881 MS.gene80096:CDS 40.0%
TGAGGATAAGGATCTTACCT+TGG + chr5.1:42341680-42341699 MS.gene80096:CDS 40.0%
TGCGTTAGTTAACTAACGCA+AGG + chr5.1:42341487-42341506 MS.gene80096:intron 40.0%
TGGCCTATACACTTATGCAT+TGG + chr5.1:42341714-42341733 MS.gene80096:CDS 40.0%
TTCAACATGTTGCATTGCAG+TGG + chr5.1:42341619-42341638 MS.gene80096:intron 40.0%
TTGCGTGAGTTAACTTACAC+TGG + chr5.1:42341123-42341142 MS.gene80096:intron 40.0%
! AACTGCTGTAGCTGTTCTTT+TGG + chr5.1:42341420-42341439 MS.gene80096:intron 40.0%
! AAGTGAAAAGCGCAACAATC+AGG - chr5.1:42341266-42341285 None:intergenic 40.0%
! CCAAGTAAATGATGGGATTG+TGG + chr5.1:42339927-42339946 MS.gene80096:CDS 40.0%
! TTATGCATTGGCAGTAGCAA+CGG + chr5.1:42341726-42341745 MS.gene80096:CDS 40.0%
!! CAGCAATTTTGGTGCATAGA+TGG + chr5.1:42339812-42339831 MS.gene80096:intron 40.0%
!! CTTCTGGGATATTTGGGATT+TGG + chr5.1:42339896-42339915 MS.gene80096:CDS 40.0%
!! GCTTTAGCTTCTGGGATATT+TGG + chr5.1:42339889-42339908 MS.gene80096:CDS 40.0%
!!! AACTAACGCAAGGGCATTTT+TGG + chr5.1:42341497-42341516 MS.gene80096:intron 40.0%
!!! GCATTTTTGGCATGGCTAAA+AGG + chr5.1:42341510-42341529 MS.gene80096:intron 40.0%
!!! GGTATTTTGGTCAGTTTGAC+TGG - chr5.1:42341051-42341070 None:intergenic 40.0%
AAAGAGCAAAGGGAGTAGTG+AGG - chr5.1:42339404-42339423 None:intergenic 45.0%
AAGAGCAAAGGGAGTAGTGA+GGG - chr5.1:42339403-42339422 None:intergenic 45.0%
AATCCAATGACCATGAGCAC+AGG - chr5.1:42339645-42339664 None:intergenic 45.0%
ACGGTATATTACGACACCAG+TGG - chr5.1:42341317-42341336 None:intergenic 45.0%
ACTCACCTGAGCTTCAAAGA+GGG - chr5.1:42339998-42340017 None:intergenic 45.0%
ACTCTCGCAAGAAAGAGCAA+AGG - chr5.1:42339415-42339434 None:intergenic 45.0%
AGGCCAAGAAATACATGCCA+AGG - chr5.1:42341700-42341719 None:intergenic 45.0%
CTACAGCCTTCATTCATGGA+TGG + chr5.1:42339957-42339976 MS.gene80096:CDS 45.0%
CTCTCGCAAGAAAGAGCAAA+GGG - chr5.1:42339414-42339433 None:intergenic 45.0%
CTCTTTCTTGCGAGAGTTTG+TGG + chr5.1:42339418-42339437 MS.gene80096:CDS 45.0%
GCATAGATGAGATCCTGTTG+AGG - chr5.1:42339520-42339539 None:intergenic 45.0%
GCATTTATGTCTTCAAGGGG+TGG + chr5.1:42339867-42339886 MS.gene80096:CDS 45.0%
GGCGTTAGTTAACTAACGCA+TGG - chr5.1:42341073-42341092 None:intergenic 45.0%
GTCAAGGGGGTTGAAGAAAT+CGG + chr5.1:42339843-42339862 MS.gene80096:CDS 45.0%
GTGTCGTAATATACCGTGCA+AGG + chr5.1:42341320-42341339 MS.gene80096:intron 45.0%
TACTCACCTGAGCTTCAAAG+AGG - chr5.1:42339999-42340018 None:intergenic 45.0%
TCACTGATCGCATTTCTCCT+CGG - chr5.1:42341663-42341682 None:intergenic 45.0%
TTTGGTCAGTTTGACTGGGT+GGG - chr5.1:42341046-42341065 None:intergenic 45.0%
! GCAGTGGCTTCTTGAACTTT+TGG + chr5.1:42341635-42341654 MS.gene80096:intron 45.0%
! TTCTTGAACTTTTGGCACCG+AGG + chr5.1:42341643-42341662 MS.gene80096:CDS 45.0%
! TTTTGGTCAGTTTGACTGGG+TGG - chr5.1:42341047-42341066 None:intergenic 45.0%
!! TGTATCCCTCTTTGAAGCTC+AGG + chr5.1:42339990-42340009 MS.gene80096:CDS 45.0%
ATAGATGGTTGCCTGGGTCA+AGG + chr5.1:42339827-42339846 MS.gene80096:CDS 50.0%
CAATGACCATGAGCACAGGA+TGG - chr5.1:42339641-42339660 None:intergenic 50.0%
CATCCTGTGCTCATGGTCAT+TGG + chr5.1:42339639-42339658 MS.gene80096:CDS 50.0%
GAGGAGAAATGCGATCAGTG+AGG + chr5.1:42341662-42341681 MS.gene80096:CDS 50.0%
GAGTAGTGAGGGAAAGACAG+TGG - chr5.1:42339392-42339411 None:intergenic 50.0%
GCACAGCAATAACAAGGGGT+TGG - chr5.1:42341395-42341414 None:intergenic 50.0%
TAGATGGTTGCCTGGGTCAA+GGG + chr5.1:42339828-42339847 MS.gene80096:CDS 50.0%
TCTTGTTCTCTTCTGGGCTC+TGG + chr5.1:42339456-42339475 MS.gene80096:CDS 50.0%
TGGTGCATAGATGGTTGCCT+GGG + chr5.1:42339821-42339840 MS.gene80096:CDS 50.0%
TTGGTGCATAGATGGTTGCC+TGG + chr5.1:42339820-42339839 MS.gene80096:CDS 50.0%
! AAGGCGCGAGTGAAAAGTGT+AGG + chr5.1:42341529-42341548 MS.gene80096:intron 50.0%
! AGGCGCGAGTGAAAAGTGTA+GGG + chr5.1:42341530-42341549 MS.gene80096:intron 50.0%
! CCAGCGTGAGTTAAGTTGCA+CGG - chr5.1:42341094-42341113 None:intergenic 50.0%
!! AAGGGGTGGCTTTAGCTTCT+GGG + chr5.1:42339881-42339900 MS.gene80096:CDS 50.0%
!!! ACGCAAGGGCATTTTTGGCA+TGG + chr5.1:42341502-42341521 MS.gene80096:intron 50.0%
AGATGGTTGCCTGGGTCAAG+GGG + chr5.1:42339829-42339848 MS.gene80096:CDS 55.0%
CCGTGCAACTTAACTCACGC+TGG + chr5.1:42341091-42341110 MS.gene80096:intron 55.0%
GGTTCTCCATCCTGTGCTCA+TGG + chr5.1:42339632-42339651 MS.gene80096:intron 55.0%
TTCTTCAACCCCCTTGACCC+AGG - chr5.1:42339841-42339860 None:intergenic 55.0%
! GCGCGAGTGAAAAGTGTAGG+GGG + chr5.1:42341532-42341551 MS.gene80096:intron 55.0%
! GGCGCGAGTGAAAAGTGTAG+GGG + chr5.1:42341531-42341550 MS.gene80096:intron 55.0%
! GTGGGAGCGAAAAGTGCAGA+GGG - chr5.1:42341028-42341047 None:intergenic 55.0%
! TGCATTGGCAGTAGCAACGG+CGG + chr5.1:42341729-42341748 MS.gene80096:CDS 55.0%
! TGGGAGCGAAAAGTGCAGAG+GGG - chr5.1:42341027-42341046 None:intergenic 55.0%
!! CAAGGGGTGGCTTTAGCTTC+TGG + chr5.1:42339880-42339899 MS.gene80096:CDS 55.0%
GATGGTTGCCTGGGTCAAGG+GGG + chr5.1:42339830-42339849 MS.gene80096:CDS 60.0%
GCAGTAGCAACGGCGGAAAC+TGG + chr5.1:42341736-42341755 MS.gene80096:CDS 60.0%
! GGTGGGAGCGAAAAGTGCAG+AGG - chr5.1:42341029-42341048 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 42339385 42341818 42339385 ID=MS.gene80096
chr5.1 mRNA 42339385 42341818 42339385 ID=MS.gene80096.t1;Parent=MS.gene80096
chr5.1 exon 42339385 42339540 42339385 ID=MS.gene80096.t1.exon1;Parent=MS.gene80096.t1
chr5.1 CDS 42339385 42339540 42339385 ID=cds.MS.gene80096.t1;Parent=MS.gene80096.t1
chr5.1 exon 42339633 42339684 42339633 ID=MS.gene80096.t1.exon2;Parent=MS.gene80096.t1
chr5.1 CDS 42339633 42339684 42339633 ID=cds.MS.gene80096.t1;Parent=MS.gene80096.t1
chr5.1 exon 42339815 42340011 42339815 ID=MS.gene80096.t1.exon3;Parent=MS.gene80096.t1
chr5.1 CDS 42339815 42340011 42339815 ID=cds.MS.gene80096.t1;Parent=MS.gene80096.t1
chr5.1 exon 42341639 42341818 42341639 ID=MS.gene80096.t1.exon4;Parent=MS.gene80096.t1
chr5.1 CDS 42341639 42341818 42341639 ID=cds.MS.gene80096.t1;Parent=MS.gene80096.t1
Gene Sequence

>MS.gene80096

ATGGCCACTGTCTTTCCCTCACTACTCCCTTTGCTCTTTCTTGCGAGAGTTTGTGGTCTTTCAGTAGCATTTCTTGTTCTCTTCTGGGCTCTGGCTTTCAAATCTAGCTTCCTCAATACTCCTAATTCTCTTCCTCAACAGGATCTCATCTATGCAGTACATACATAACCTCTATTTTCTTCATTCCCTTTTTATTTAATTACATCAAAGAATGCATAAGCTTTATTTTAATTTTAATTTAATTGCAGGTTCTCCATCCTGTGCTCATGGTCATTGGATTTATCCTTTTAAGTGGAGAAGGTAGTACTCTAGTTTTAGCAACCCAAAAATATTATGTATTGGGATTAGGATATTTTACATAATGAAATCAAGTCATTATTGGTCAATTTGTATTTAGTTTAATTGTTTTAATGAATGAATGTTTGTGCAGCAATTTTGGTGCATAGATGGTTGCCTGGGTCAAGGGGGTTGAAGAAATCGGTGCATTTATGTCTTCAAGGGGTGGCTTTAGCTTCTGGGATATTTGGGATTTGGACAAAATTCCAAGTAAATGATGGGATTGTGGCTAATTTCTACAGCCTTCATTCATGGATGGGTTTGATTTGTGTATCCCTCTTTGAAGCTCAGGTGAGTATGCTCTATCATTTCTTTACATTTTTTAAATCAGAGACTTTCTAAATTAATTTTTACTTAGGTAATAGTATTTTTTTTGTTATATTTAAATCAAATTTATGATTTATTTTGAAGAATACATGTATGTTAATTGATGGTGATTTTGTTGGTAACTTCTTTTTATAATTTATAATACAAGTAAAAATAATTACTAGTACTGTAATAAGTAATATAATAATTTGATAAAAACTAAAGGAAAAAAATACACATTTTCTGAACACGTCTATATAACATACACACATTTTCCATTGTAAAGTTCACCATAAAAAACAATACACTCTCATCTCTTCCTTCTTTTTTCCTCTATCTCCAATTTAAGTCATGGCAAAAGTAGGAATTAGTGTTGGTCTGAAGTAATACTTCAGACCAACACTAATTCCTACTTTTGCCATGACTTAAATTGGAGATAGAGGAAAAAAGAAGGAAGAGATGAGAGTGTATTGTTTTTTATGATGAATTTTACAATGAAAAATGTGTGTATGTTATATAGACGTGTTCAGAAAATGTGTATTTTTTTCCTTTAGTTTTTATCAAATTATTATATTATTTATTACAGTAATAGTAATTATTTTTACTTGTATTATAAATCATGAAAAGAAGTTACCAACAAAATCTCCATCACTTAACATATATGCATTCACCGACAATATCGCAATCAATTAACAATATGTATTCACCGACAATATCGCAATCAATCAACATATATGTATTCACCAACCATATCACAATCAATCAACATATATGTACCAACAATATCACAATCAATCAACATATATGTATTCATCGACTTTATCATATAATTCAACAACATCATATTATTTCTCACAATTTAAGTGAGGGGAAAATACACCACACTATGTATACAGTAAGTATGTTAACTGATGTATTTTTGGATAGAATTATATCGACTTTATCATATAATTCAACAACATCATACTATTTCTTATATATAAAATTTTTCTGCTCTCCCCTCTGCACTTTTCGCTCCCACCCAGTCAAACTGACCAAAATACCCATGCGTTAGTTAACTAACGCCGTGCAACTTAACTCACGCTGGAATTAACACTTGCGTGAGTTAACTTACACTGGAATTTACAGAAATATTTTTCCATTTGAATTCACGTAGCGATTGTTAGTTCCAAATTCCAGTTTCTTATTGTTATCCTTTTATTTCAATTTAGTTGCTTCCCCTTTATTCATGTATGTCCTGATTGTTGCGCTTTTCACTTCAATCCCAATTATGAATTGTTATTATCACCACTGGTGTCGTAATATACCGTGCAAGGCTTGACTTTTTGAATTGAATTTCCATTGATAGAAATTAATTGTGTCGTTCCAACCCCTTGTTATTGCTGTGCATATAAACTGCTGTAGCTGTTCTTTTGGAAATTGTAAACTAGTGTGAGGTAAGTAACACAAAGTTTAACACTTGCGTTAGTTAACTAACGCAAGGGCATTTTTGGCATGGCTAAAAGGCGCGAGTGAAAAGTGTAGGGGGAAGAGCAAAATTCTTTTATGTATATGGTTTAGTTTTAATTTTTTAACAAAAATCCATAACGAAGTTCAACATGTTGCATTGCAGTGGCTTCTTGAACTTTTGGCACCGAGGAGAAATGCGATCAGTGAGGATAAGGATCTTACCTTGGCATGTATTTCTTGGCCTATACACTTATGCATTGGCAGTAGCAACGGCGGAAACTGGATTATTAGAGAAGCTGACATTCTTGCAAACACAGAGAAATGTATCCAAACACAGCACTGA

Protein sequence

>MS.gene80096.t1

MATVFPSLLPLLFLARVCGLSVAFLVLFWALAFKSSFLNTPNSLPQQDLIYAVLHPVLMVIGFILLSGEAILVHRWLPGSRGLKKSVHLCLQGVALASGIFGIWTKFQVNDGIVANFYSLHSWMGLICVSLFEAQWLLELLAPRRNAISEDKDLTLACISWPIHLCIGSSNGGNWIIREADILANTEKCIQTQH