Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80096.t1 | XP_003614405.1 | 95.7 | 140 | 6 | 0 | 2 | 141 | 4 | 143 | 2.70E-67 | 265 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80096.t1 | Q9C540 | 62.0 | 137 | 41 | 1 | 1 | 137 | 1 | 126 | 1.7e-38 | 160.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80096.t1 | G7JX23 | 95.7 | 140 | 6 | 0 | 2 | 141 | 4 | 143 | 2.0e-67 | 265.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053918 | MS.gene80096 | 0.86169 | 8.59E-64 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80096.t1 | MTR_5g053250 | 95.714 | 140 | 6 | 0 | 2 | 141 | 4 | 143 | 7.80e-83 | 246 |
MS.gene80096.t1 | MTR_5g053250 | 80.240 | 167 | 6 | 1 | 2 | 141 | 4 | 170 | 1.42e-76 | 231 |
MS.gene80096.t1 | MTR_5g053250 | 95.181 | 83 | 4 | 0 | 59 | 141 | 1 | 83 | 9.62e-51 | 162 |
MS.gene80096.t1 | MTR_6g017105 | 39.706 | 136 | 77 | 3 | 1 | 135 | 1 | 132 | 2.65e-23 | 93.2 |
MS.gene80096.t1 | MTR_1g100643 | 40.000 | 140 | 76 | 4 | 1 | 138 | 1 | 134 | 1.19e-22 | 91.3 |
MS.gene80096.t1 | MTR_1g033360 | 37.405 | 131 | 75 | 3 | 14 | 142 | 15 | 140 | 5.95e-21 | 86.7 |
MS.gene80096.t1 | MTR_1g100643 | 44.444 | 81 | 44 | 1 | 59 | 138 | 1 | 81 | 3.60e-15 | 70.5 |
MS.gene80096.t1 | MTR_1g033390 | 31.008 | 129 | 84 | 4 | 14 | 141 | 9 | 133 | 2.01e-13 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80096.t1 | AT1G26100 | 59.859 | 142 | 46 | 1 | 1 | 142 | 1 | 131 | 6.27e-51 | 164 |
MS.gene80096.t1 | AT5G38630 | 44.275 | 131 | 64 | 5 | 9 | 136 | 9 | 133 | 1.21e-26 | 102 |
MS.gene80096.t1 | AT4G25570 | 38.806 | 134 | 77 | 3 | 9 | 141 | 49 | 178 | 1.54e-23 | 94.7 |
MS.gene80096.t1 | AT4G25570 | 38.806 | 134 | 77 | 3 | 9 | 141 | 8 | 137 | 2.40e-23 | 93.6 |
MS.gene80096.t1 | AT1G14730 | 29.861 | 144 | 91 | 4 | 14 | 152 | 20 | 158 | 6.86e-12 | 62.4 |
Find 58 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTTAGCTTCTGGGATATT+TGG | 0.112597 | 5.1:+42339889 | MS.gene80096:CDS |
TAGCATTTCTTGTTCTCTTC+TGG | 0.118815 | 5.1:+42339449 | MS.gene80096:CDS |
CAAGGGGTGGCTTTAGCTTC+TGG | 0.175443 | 5.1:+42339880 | MS.gene80096:CDS |
GAATGTTTGTGCAGCAATTT+TGG | 0.224729 | 5.1:+42339801 | MS.gene80096:intron |
TTACCTTGGCATGTATTTCT+TGG | 0.229367 | 5.1:+42341694 | MS.gene80096:CDS |
CTTTAGCTTCTGGGATATTT+GGG | 0.267158 | 5.1:+42339890 | MS.gene80096:CDS |
CTTCTGGGATATTTGGGATT+TGG | 0.279862 | 5.1:+42339896 | MS.gene80096:CDS |
TCCTGTTGAGGAAGAGAATT+AGG | 0.298620 | 5.1:-42339505 | None:intergenic |
ATTTCTACAGCCTTCATTCA+TGG | 0.299138 | 5.1:+42339953 | MS.gene80096:CDS |
CTCTTTCTTGCGAGAGTTTG+TGG | 0.301862 | 5.1:+42339418 | MS.gene80096:CDS |
GCAGTGGCTTCTTGAACTTT+TGG | 0.301868 | 5.1:+42341635 | MS.gene80096:intron |
AAGGGGTGGCTTTAGCTTCT+GGG | 0.303519 | 5.1:+42339881 | MS.gene80096:CDS |
AGCATTTCTTGTTCTCTTCT+GGG | 0.319777 | 5.1:+42339450 | MS.gene80096:CDS |
TACTACCTTCTCCACTTAAA+AGG | 0.321243 | 5.1:-42339668 | None:intergenic |
CCACAATCCCATCATTTACT+TGG | 0.326307 | 5.1:-42339927 | None:intergenic |
CATCCTGTGCTCATGGTCAT+TGG | 0.339718 | 5.1:+42339639 | MS.gene80096:CDS |
TCTTGTTCTCTTCTGGGCTC+TGG | 0.357755 | 5.1:+42339456 | MS.gene80096:CDS |
GCAGTAGCAACGGCGGAAAC+TGG | 0.361598 | 5.1:+42341736 | MS.gene80096:CDS |
TGTATCCCTCTTTGAAGCTC+AGG | 0.397102 | 5.1:+42339990 | MS.gene80096:CDS |
TCCTAATTCTCTTCCTCAAC+AGG | 0.404001 | 5.1:+42339504 | MS.gene80096:CDS |
TAGATGGTTGCCTGGGTCAA+GGG | 0.416984 | 5.1:+42339828 | MS.gene80096:CDS |
CTGCCAATGCATAAGTGTAT+AGG | 0.426996 | 5.1:-42341717 | None:intergenic |
ACAAAATTCCAAGTAAATGA+TGG | 0.437217 | 5.1:+42339919 | MS.gene80096:CDS |
TACAGCCTTCATTCATGGAT+GGG | 0.445813 | 5.1:+42339958 | MS.gene80096:CDS |
CATGGACTCAGTGCTGTGTT+TGG | 0.448440 | 5.1:-42341803 | None:intergenic |
ATAGATGGTTGCCTGGGTCA+AGG | 0.449560 | 5.1:+42339827 | MS.gene80096:CDS |
GAAGAGAATTAGGAGTATTG+AGG | 0.459271 | 5.1:-42339495 | None:intergenic |
AAATGCGATCAGTGAGGATA+AGG | 0.461868 | 5.1:+42341668 | MS.gene80096:CDS |
TCGGTGCATTTATGTCTTCA+AGG | 0.466772 | 5.1:+42339862 | MS.gene80096:CDS |
TTGGTGCATAGATGGTTGCC+TGG | 0.471390 | 5.1:+42339820 | MS.gene80096:CDS |
GGTTCTCCATCCTGTGCTCA+TGG | 0.477323 | 5.1:+42339632 | MS.gene80096:intron |
CTACAGCCTTCATTCATGGA+TGG | 0.480089 | 5.1:+42339957 | MS.gene80096:CDS |
AGATGGTTGCCTGGGTCAAG+GGG | 0.483244 | 5.1:+42339829 | MS.gene80096:CDS |
AAGAGCAAAGGGAGTAGTGA+GGG | 0.491250 | 5.1:-42339400 | None:intergenic |
CTCTCGCAAGAAAGAGCAAA+GGG | 0.500913 | 5.1:-42339411 | None:intergenic |
CGGTGCATTTATGTCTTCAA+GGG | 0.507370 | 5.1:+42339863 | MS.gene80096:CDS |
CAAAATTCCAAGTAAATGAT+GGG | 0.535853 | 5.1:+42339920 | MS.gene80096:CDS |
CCAAGTAAATGATGGGATTG+TGG | 0.538655 | 5.1:+42339927 | MS.gene80096:CDS |
TCAAACCCATCCATGAATGA+AGG | 0.539092 | 5.1:-42339963 | None:intergenic |
GCATTTATGTCTTCAAGGGG+TGG | 0.549961 | 5.1:+42339867 | MS.gene80096:CDS |
TGGCCTATACACTTATGCAT+TGG | 0.552843 | 5.1:+42341714 | MS.gene80096:CDS |
TCACTGATCGCATTTCTCCT+CGG | 0.562616 | 5.1:-42341660 | None:intergenic |
AGGCCAAGAAATACATGCCA+AGG | 0.572983 | 5.1:-42341697 | None:intergenic |
TGGTGCATAGATGGTTGCCT+GGG | 0.586545 | 5.1:+42339821 | MS.gene80096:CDS |
TTATGCATTGGCAGTAGCAA+CGG | 0.591173 | 5.1:+42341726 | MS.gene80096:CDS |
AATCCAATGACCATGAGCAC+AGG | 0.602677 | 5.1:-42339642 | None:intergenic |
TACTCACCTGAGCTTCAAAG+AGG | 0.613059 | 5.1:-42339996 | None:intergenic |
CAATGACCATGAGCACAGGA+TGG | 0.614301 | 5.1:-42339638 | None:intergenic |
TGAGGATAAGGATCTTACCT+TGG | 0.620818 | 5.1:+42341680 | MS.gene80096:CDS |
GATGGTTGCCTGGGTCAAGG+GGG | 0.624454 | 5.1:+42339830 | MS.gene80096:CDS |
ACTCTCGCAAGAAAGAGCAA+AGG | 0.634673 | 5.1:-42339412 | None:intergenic |
ACTCACCTGAGCTTCAAAGA+GGG | 0.638153 | 5.1:-42339995 | None:intergenic |
TGCATTGGCAGTAGCAACGG+CGG | 0.640059 | 5.1:+42341729 | MS.gene80096:CDS |
GGTGCATTTATGTCTTCAAG+GGG | 0.646132 | 5.1:+42339864 | MS.gene80096:CDS |
AAAGAGCAAAGGGAGTAGTG+AGG | 0.647530 | 5.1:-42339401 | None:intergenic |
GCATAGATGAGATCCTGTTG+AGG | 0.669004 | 5.1:-42339517 | None:intergenic |
GAGTAGTGAGGGAAAGACAG+TGG | 0.669481 | 5.1:-42339389 | None:intergenic |
GAGGAGAAATGCGATCAGTG+AGG | 0.738861 | 5.1:+42341662 | MS.gene80096:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAATTTGATAAAAACTAA+AGG | + | chr5.1:42340230-42340249 | MS.gene80096:intron | 10.0% |
!! | AATAATTTGATAAAAACTAA+AGG | - | chr5.1:42340249-42340230 | None:intergenic | 10.0% |
!! | TTGATGTAATTAAATAAAAA+GGG | - | chr5.1:42339573-42339592 | None:intergenic | 10.0% |
!! | TTTGATGTAATTAAATAAAA+AGG | - | chr5.1:42339574-42339593 | None:intergenic | 10.0% |
!!! | TTCTAAATTAATTTTTACTT+AGG | + | chr5.1:42340057-42340076 | MS.gene80096:intron | 10.0% |
!!! | TTTAATTTTAATTTAATTGC+AGG | + | chr5.1:42339611-42339630 | MS.gene80096:intron | 10.0% |
!! | GATAATAACAATTCATAATT+GGG | - | chr5.1:42341293-42341312 | None:intergenic | 15.0% |
!! | TGATAATAACAATTCATAAT+TGG | - | chr5.1:42341294-42341313 | None:intergenic | 15.0% |
!! | AAATATTATGTATTGGGATT+AGG | + | chr5.1:42339711-42339730 | MS.gene80096:intron | 20.0% |
!! | AACCCAAAAATATTATGTAT+TGG | + | chr5.1:42339704-42339723 | MS.gene80096:intron | 20.0% |
!! | AATACATGTATGTTAATTGA+TGG | + | chr5.1:42340132-42340151 | MS.gene80096:intron | 20.0% |
!! | ACACAATTAATTTCTATCAA+TGG | - | chr5.1:42341368-42341387 | None:intergenic | 20.0% |
!! | ACCCAAAAATATTATGTATT+GGG | + | chr5.1:42339705-42339724 | MS.gene80096:intron | 20.0% |
!! | AGCAACTAAATTGAAATAAA+AGG | - | chr5.1:42341223-42341242 | None:intergenic | 20.0% |
!! | TAATGAAATCAAGTCATTAT+TGG | + | chr5.1:42339744-42339763 | MS.gene80096:intron | 20.0% |
!!! | ATCCCAATACATAATATTTT+TGG | - | chr5.1:42339710-42339729 | None:intergenic | 20.0% |
!!! | GCAAAATTCTTTTATGTATA+TGG | + | chr5.1:42341559-42341578 | MS.gene80096:intron | 20.0% |
!!! | TATGTTAACTGATGTATTTT+TGG | + | chr5.1:42340927-42340946 | MS.gene80096:intron | 20.0% |
!!! | TCCCAATACATAATATTTTT+GGG | - | chr5.1:42339709-42339728 | None:intergenic | 20.0% |
! | AAAGGATAACAATAAGAAAC+TGG | - | chr5.1:42341205-42341224 | None:intergenic | 25.0% |
! | AACAATAAGAAACTGGAATT+TGG | - | chr5.1:42341198-42341217 | None:intergenic | 25.0% |
! | AATGCATATATGTTAAGTGA+TGG | - | chr5.1:42340675-42340694 | None:intergenic | 25.0% |
! | ACAAAATTCCAAGTAAATGA+TGG | + | chr5.1:42339919-42339938 | MS.gene80096:CDS | 25.0% |
! | ATTTCTCACAATTTAAGTGA+GGG | + | chr5.1:42340874-42340893 | MS.gene80096:intron | 25.0% |
! | CAAAATTCCAAGTAAATGAT+GGG | + | chr5.1:42339920-42339939 | MS.gene80096:CDS | 25.0% |
! | TATTTCTCACAATTTAAGTG+AGG | + | chr5.1:42340873-42340892 | MS.gene80096:intron | 25.0% |
! | TTAATTGATTGCGATATTGT+CGG | - | chr5.1:42340700-42340719 | None:intergenic | 25.0% |
! | TTGATTGATTGTGATATTGT+TGG | - | chr5.1:42340806-42340825 | None:intergenic | 25.0% |
!! | ATTGGATTTATCCTTTTAAG+TGG | + | chr5.1:42339657-42339676 | MS.gene80096:CDS | 25.0% |
!! | TATGTTGATTGATTGTGATA+TGG | - | chr5.1:42340777-42340796 | None:intergenic | 25.0% |
!! | TTTTATGGTGAACTTTACAA+TGG | - | chr5.1:42340305-42340324 | None:intergenic | 25.0% |
!!! | TGAGAGTGTATTGTTTTTTA+TGG | - | chr5.1:42340506-42340487 | None:intergenic | 25.0% |
!!! | TTAATTGATGGTGATTTTGT+TGG | + | chr5.1:42340144-42340163 | MS.gene80096:intron | 25.0% |
AAAGGGAATGAAGAAAATAG+AGG | - | chr5.1:42339556-42339575 | None:intergenic | 30.0% | |
ATCAGGACATACATGAATAA+AGG | - | chr5.1:42341249-42341268 | None:intergenic | 30.0% | |
ATGACTTAAATTGGAGATAG+AGG | + | chr5.1:42340447-42340466 | MS.gene80096:intron | 30.0% | |
ATGACTTAAATTGGAGATAG+AGG | - | chr5.1:42340466-42340447 | None:intergenic | 30.0% | |
ATTTAAGTCATGGCAAAAGT+AGG | + | chr5.1:42340369-42340388 | MS.gene80096:intron | 30.0% | |
ATTTAAGTCATGGCAAAAGT+AGG | - | chr5.1:42340388-42340369 | None:intergenic | 30.0% | |
TACTTACTGTATACATAGTG+TGG | - | chr5.1:42340909-42340928 | None:intergenic | 30.0% | |
TATATGCACAGCAATAACAA+GGG | - | chr5.1:42341400-42341419 | None:intergenic | 30.0% | |
TCAGGACATACATGAATAAA+GGG | - | chr5.1:42341248-42341267 | None:intergenic | 30.0% | |
TCTATCTCCAATTTAAGTCA+TGG | + | chr5.1:42340359-42340378 | MS.gene80096:intron | 30.0% | |
TCTATCTCCAATTTAAGTCA+TGG | - | chr5.1:42340378-42340359 | None:intergenic | 30.0% | |
TTATATGCACAGCAATAACA+AGG | - | chr5.1:42341401-42341420 | None:intergenic | 30.0% | |
TTGATTGATTGCGATATTGT+CGG | - | chr5.1:42340736-42340755 | None:intergenic | 30.0% | |
TTGATTGATTGTGATATGGT+TGG | - | chr5.1:42340773-42340792 | None:intergenic | 30.0% | |
TTTCTCACAATTTAAGTGAG+GGG | + | chr5.1:42340875-42340894 | MS.gene80096:intron | 30.0% | |
! | ACTTTTGCCATGACTTAAAT+TGG | + | chr5.1:42340438-42340457 | MS.gene80096:intron | 30.0% |
! | ACTTTTGCCATGACTTAAAT+TGG | - | chr5.1:42340457-42340438 | None:intergenic | 30.0% |
! | TGAATTGTTATTATCACCAC+TGG | + | chr5.1:42341298-42341317 | MS.gene80096:intron | 30.0% |
!! | TTAAGTGATGGAGATTTTGT+TGG | - | chr5.1:42340663-42340682 | None:intergenic | 30.0% |
!! | TTTATCCTTTTAAGTGGAGA+AGG | + | chr5.1:42339663-42339682 | MS.gene80096:CDS | 30.0% |
AATCGCTACGTGAATTCAAA+TGG | - | chr5.1:42341168-42341187 | None:intergenic | 35.0% | |
AGCATTTCTTGTTCTCTTCT+GGG | + | chr5.1:42339450-42339469 | MS.gene80096:CDS | 35.0% | |
ATATGCACAGCAATAACAAG+GGG | - | chr5.1:42341399-42341418 | None:intergenic | 35.0% | |
ATTTCTACAGCCTTCATTCA+TGG | + | chr5.1:42339953-42339972 | MS.gene80096:CDS | 35.0% | |
CAACATGTTGAACTTCGTTA+TGG | - | chr5.1:42341611-42341630 | None:intergenic | 35.0% | |
CAGGACATACATGAATAAAG+GGG | - | chr5.1:42341247-42341266 | None:intergenic | 35.0% | |
GCAAAAGTAGGAATTAGTGT+TGG | + | chr5.1:42340381-42340400 | MS.gene80096:intron | 35.0% | |
GCAAAAGTAGGAATTAGTGT+TGG | - | chr5.1:42340400-42340381 | None:intergenic | 35.0% | |
GGAAATTGTAAACTAGTGTG+AGG | + | chr5.1:42341441-42341460 | MS.gene80096:intron | 35.0% | |
TACTACCTTCTCCACTTAAA+AGG | - | chr5.1:42339671-42339690 | None:intergenic | 35.0% | |
TAGCATTTCTTGTTCTCTTC+TGG | + | chr5.1:42339449-42339468 | MS.gene80096:CDS | 35.0% | |
TGGAGATAGAGGAAAAAAGA+AGG | + | chr5.1:42340458-42340477 | MS.gene80096:intron | 35.0% | |
TGGAGATAGAGGAAAAAAGA+AGG | - | chr5.1:42340477-42340458 | None:intergenic | 35.0% | |
TTACCTTGGCATGTATTTCT+TGG | + | chr5.1:42341694-42341713 | MS.gene80096:CDS | 35.0% | |
! | GAATGTTTGTGCAGCAATTT+TGG | + | chr5.1:42339801-42339820 | MS.gene80096:intron | 35.0% |
! | TAACTAACGCATGGGTATTT+TGG | - | chr5.1:42341064-42341083 | None:intergenic | 35.0% |
!! | CTTTAGCTTCTGGGATATTT+GGG | + | chr5.1:42339890-42339909 | MS.gene80096:CDS | 35.0% |
!! | GAAGAGAATTAGGAGTATTG+AGG | - | chr5.1:42339498-42339517 | None:intergenic | 35.0% |
!!! | GTATTTTGGTCAGTTTGACT+GGG | - | chr5.1:42341050-42341069 | None:intergenic | 35.0% |
AAATGCGATCAGTGAGGATA+AGG | + | chr5.1:42341668-42341687 | MS.gene80096:CDS | 40.0% | |
CCACAATCCCATCATTTACT+TGG | - | chr5.1:42339930-42339949 | None:intergenic | 40.0% | |
CGGTGCATTTATGTCTTCAA+GGG | + | chr5.1:42339863-42339882 | MS.gene80096:CDS | 40.0% | |
CTGCCAATGCATAAGTGTAT+AGG | - | chr5.1:42341720-42341739 | None:intergenic | 40.0% | |
GCGTTAGTTAACTAACGCAA+GGG | + | chr5.1:42341488-42341507 | MS.gene80096:intron | 40.0% | |
GCGTTAGTTAACTAACGCAT+GGG | - | chr5.1:42341072-42341091 | None:intergenic | 40.0% | |
GGTGCATTTATGTCTTCAAG+GGG | + | chr5.1:42339864-42339883 | MS.gene80096:CDS | 40.0% | |
TACAGCCTTCATTCATGGAT+GGG | + | chr5.1:42339958-42339977 | MS.gene80096:CDS | 40.0% | |
TCAAAAAGTCAAGCCTTGCA+CGG | - | chr5.1:42341336-42341355 | None:intergenic | 40.0% | |
TCAAACCCATCCATGAATGA+AGG | - | chr5.1:42339966-42339985 | None:intergenic | 40.0% | |
TCCTAATTCTCTTCCTCAAC+AGG | + | chr5.1:42339504-42339523 | MS.gene80096:CDS | 40.0% | |
TCCTGTTGAGGAAGAGAATT+AGG | - | chr5.1:42339508-42339527 | None:intergenic | 40.0% | |
TCGGTGCATTTATGTCTTCA+AGG | + | chr5.1:42339862-42339881 | MS.gene80096:CDS | 40.0% | |
TGAGGATAAGGATCTTACCT+TGG | + | chr5.1:42341680-42341699 | MS.gene80096:CDS | 40.0% | |
TGCGTTAGTTAACTAACGCA+AGG | + | chr5.1:42341487-42341506 | MS.gene80096:intron | 40.0% | |
TGGCCTATACACTTATGCAT+TGG | + | chr5.1:42341714-42341733 | MS.gene80096:CDS | 40.0% | |
TTCAACATGTTGCATTGCAG+TGG | + | chr5.1:42341619-42341638 | MS.gene80096:intron | 40.0% | |
TTGCGTGAGTTAACTTACAC+TGG | + | chr5.1:42341123-42341142 | MS.gene80096:intron | 40.0% | |
! | AACTGCTGTAGCTGTTCTTT+TGG | + | chr5.1:42341420-42341439 | MS.gene80096:intron | 40.0% |
! | AAGTGAAAAGCGCAACAATC+AGG | - | chr5.1:42341266-42341285 | None:intergenic | 40.0% |
! | CCAAGTAAATGATGGGATTG+TGG | + | chr5.1:42339927-42339946 | MS.gene80096:CDS | 40.0% |
! | TTATGCATTGGCAGTAGCAA+CGG | + | chr5.1:42341726-42341745 | MS.gene80096:CDS | 40.0% |
!! | CAGCAATTTTGGTGCATAGA+TGG | + | chr5.1:42339812-42339831 | MS.gene80096:intron | 40.0% |
!! | CTTCTGGGATATTTGGGATT+TGG | + | chr5.1:42339896-42339915 | MS.gene80096:CDS | 40.0% |
!! | GCTTTAGCTTCTGGGATATT+TGG | + | chr5.1:42339889-42339908 | MS.gene80096:CDS | 40.0% |
!!! | AACTAACGCAAGGGCATTTT+TGG | + | chr5.1:42341497-42341516 | MS.gene80096:intron | 40.0% |
!!! | GCATTTTTGGCATGGCTAAA+AGG | + | chr5.1:42341510-42341529 | MS.gene80096:intron | 40.0% |
!!! | GGTATTTTGGTCAGTTTGAC+TGG | - | chr5.1:42341051-42341070 | None:intergenic | 40.0% |
AAAGAGCAAAGGGAGTAGTG+AGG | - | chr5.1:42339404-42339423 | None:intergenic | 45.0% | |
AAGAGCAAAGGGAGTAGTGA+GGG | - | chr5.1:42339403-42339422 | None:intergenic | 45.0% | |
AATCCAATGACCATGAGCAC+AGG | - | chr5.1:42339645-42339664 | None:intergenic | 45.0% | |
ACGGTATATTACGACACCAG+TGG | - | chr5.1:42341317-42341336 | None:intergenic | 45.0% | |
ACTCACCTGAGCTTCAAAGA+GGG | - | chr5.1:42339998-42340017 | None:intergenic | 45.0% | |
ACTCTCGCAAGAAAGAGCAA+AGG | - | chr5.1:42339415-42339434 | None:intergenic | 45.0% | |
AGGCCAAGAAATACATGCCA+AGG | - | chr5.1:42341700-42341719 | None:intergenic | 45.0% | |
CTACAGCCTTCATTCATGGA+TGG | + | chr5.1:42339957-42339976 | MS.gene80096:CDS | 45.0% | |
CTCTCGCAAGAAAGAGCAAA+GGG | - | chr5.1:42339414-42339433 | None:intergenic | 45.0% | |
CTCTTTCTTGCGAGAGTTTG+TGG | + | chr5.1:42339418-42339437 | MS.gene80096:CDS | 45.0% | |
GCATAGATGAGATCCTGTTG+AGG | - | chr5.1:42339520-42339539 | None:intergenic | 45.0% | |
GCATTTATGTCTTCAAGGGG+TGG | + | chr5.1:42339867-42339886 | MS.gene80096:CDS | 45.0% | |
GGCGTTAGTTAACTAACGCA+TGG | - | chr5.1:42341073-42341092 | None:intergenic | 45.0% | |
GTCAAGGGGGTTGAAGAAAT+CGG | + | chr5.1:42339843-42339862 | MS.gene80096:CDS | 45.0% | |
GTGTCGTAATATACCGTGCA+AGG | + | chr5.1:42341320-42341339 | MS.gene80096:intron | 45.0% | |
TACTCACCTGAGCTTCAAAG+AGG | - | chr5.1:42339999-42340018 | None:intergenic | 45.0% | |
TCACTGATCGCATTTCTCCT+CGG | - | chr5.1:42341663-42341682 | None:intergenic | 45.0% | |
TTTGGTCAGTTTGACTGGGT+GGG | - | chr5.1:42341046-42341065 | None:intergenic | 45.0% | |
! | GCAGTGGCTTCTTGAACTTT+TGG | + | chr5.1:42341635-42341654 | MS.gene80096:intron | 45.0% |
! | TTCTTGAACTTTTGGCACCG+AGG | + | chr5.1:42341643-42341662 | MS.gene80096:CDS | 45.0% |
! | TTTTGGTCAGTTTGACTGGG+TGG | - | chr5.1:42341047-42341066 | None:intergenic | 45.0% |
!! | TGTATCCCTCTTTGAAGCTC+AGG | + | chr5.1:42339990-42340009 | MS.gene80096:CDS | 45.0% |
ATAGATGGTTGCCTGGGTCA+AGG | + | chr5.1:42339827-42339846 | MS.gene80096:CDS | 50.0% | |
CAATGACCATGAGCACAGGA+TGG | - | chr5.1:42339641-42339660 | None:intergenic | 50.0% | |
CATCCTGTGCTCATGGTCAT+TGG | + | chr5.1:42339639-42339658 | MS.gene80096:CDS | 50.0% | |
GAGGAGAAATGCGATCAGTG+AGG | + | chr5.1:42341662-42341681 | MS.gene80096:CDS | 50.0% | |
GAGTAGTGAGGGAAAGACAG+TGG | - | chr5.1:42339392-42339411 | None:intergenic | 50.0% | |
GCACAGCAATAACAAGGGGT+TGG | - | chr5.1:42341395-42341414 | None:intergenic | 50.0% | |
TAGATGGTTGCCTGGGTCAA+GGG | + | chr5.1:42339828-42339847 | MS.gene80096:CDS | 50.0% | |
TCTTGTTCTCTTCTGGGCTC+TGG | + | chr5.1:42339456-42339475 | MS.gene80096:CDS | 50.0% | |
TGGTGCATAGATGGTTGCCT+GGG | + | chr5.1:42339821-42339840 | MS.gene80096:CDS | 50.0% | |
TTGGTGCATAGATGGTTGCC+TGG | + | chr5.1:42339820-42339839 | MS.gene80096:CDS | 50.0% | |
! | AAGGCGCGAGTGAAAAGTGT+AGG | + | chr5.1:42341529-42341548 | MS.gene80096:intron | 50.0% |
! | AGGCGCGAGTGAAAAGTGTA+GGG | + | chr5.1:42341530-42341549 | MS.gene80096:intron | 50.0% |
! | CCAGCGTGAGTTAAGTTGCA+CGG | - | chr5.1:42341094-42341113 | None:intergenic | 50.0% |
!! | AAGGGGTGGCTTTAGCTTCT+GGG | + | chr5.1:42339881-42339900 | MS.gene80096:CDS | 50.0% |
!!! | ACGCAAGGGCATTTTTGGCA+TGG | + | chr5.1:42341502-42341521 | MS.gene80096:intron | 50.0% |
AGATGGTTGCCTGGGTCAAG+GGG | + | chr5.1:42339829-42339848 | MS.gene80096:CDS | 55.0% | |
CCGTGCAACTTAACTCACGC+TGG | + | chr5.1:42341091-42341110 | MS.gene80096:intron | 55.0% | |
GGTTCTCCATCCTGTGCTCA+TGG | + | chr5.1:42339632-42339651 | MS.gene80096:intron | 55.0% | |
TTCTTCAACCCCCTTGACCC+AGG | - | chr5.1:42339841-42339860 | None:intergenic | 55.0% | |
! | GCGCGAGTGAAAAGTGTAGG+GGG | + | chr5.1:42341532-42341551 | MS.gene80096:intron | 55.0% |
! | GGCGCGAGTGAAAAGTGTAG+GGG | + | chr5.1:42341531-42341550 | MS.gene80096:intron | 55.0% |
! | GTGGGAGCGAAAAGTGCAGA+GGG | - | chr5.1:42341028-42341047 | None:intergenic | 55.0% |
! | TGCATTGGCAGTAGCAACGG+CGG | + | chr5.1:42341729-42341748 | MS.gene80096:CDS | 55.0% |
! | TGGGAGCGAAAAGTGCAGAG+GGG | - | chr5.1:42341027-42341046 | None:intergenic | 55.0% |
!! | CAAGGGGTGGCTTTAGCTTC+TGG | + | chr5.1:42339880-42339899 | MS.gene80096:CDS | 55.0% |
GATGGTTGCCTGGGTCAAGG+GGG | + | chr5.1:42339830-42339849 | MS.gene80096:CDS | 60.0% | |
GCAGTAGCAACGGCGGAAAC+TGG | + | chr5.1:42341736-42341755 | MS.gene80096:CDS | 60.0% | |
! | GGTGGGAGCGAAAAGTGCAG+AGG | - | chr5.1:42341029-42341048 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 42339385 | 42341818 | 42339385 | ID=MS.gene80096 |
chr5.1 | mRNA | 42339385 | 42341818 | 42339385 | ID=MS.gene80096.t1;Parent=MS.gene80096 |
chr5.1 | exon | 42339385 | 42339540 | 42339385 | ID=MS.gene80096.t1.exon1;Parent=MS.gene80096.t1 |
chr5.1 | CDS | 42339385 | 42339540 | 42339385 | ID=cds.MS.gene80096.t1;Parent=MS.gene80096.t1 |
chr5.1 | exon | 42339633 | 42339684 | 42339633 | ID=MS.gene80096.t1.exon2;Parent=MS.gene80096.t1 |
chr5.1 | CDS | 42339633 | 42339684 | 42339633 | ID=cds.MS.gene80096.t1;Parent=MS.gene80096.t1 |
chr5.1 | exon | 42339815 | 42340011 | 42339815 | ID=MS.gene80096.t1.exon3;Parent=MS.gene80096.t1 |
chr5.1 | CDS | 42339815 | 42340011 | 42339815 | ID=cds.MS.gene80096.t1;Parent=MS.gene80096.t1 |
chr5.1 | exon | 42341639 | 42341818 | 42341639 | ID=MS.gene80096.t1.exon4;Parent=MS.gene80096.t1 |
chr5.1 | CDS | 42341639 | 42341818 | 42341639 | ID=cds.MS.gene80096.t1;Parent=MS.gene80096.t1 |
Gene Sequence |
Protein sequence |