Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053918.t1 | XP_003614405.1 | 96.4 | 140 | 5 | 0 | 2 | 141 | 4 | 143 | 2.50E-68 | 268.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053918.t1 | Q9C540 | 62.0 | 137 | 41 | 1 | 1 | 137 | 1 | 126 | 1.3e-38 | 161.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053918.t1 | G7JX23 | 96.4 | 140 | 5 | 0 | 2 | 141 | 4 | 143 | 1.8e-68 | 268.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053918 | MS.gene44844 | 0.806452 | 8.17E-50 | -1.69E-46 |
| MS.gene053918 | MS.gene68106 | 0.800271 | 1.56E-48 | -1.69E-46 |
| MS.gene053918 | MS.gene78726 | 0.907014 | 8.00E-81 | -1.69E-46 |
| MS.gene053918 | MS.gene78727 | 0.900462 | 7.15E-78 | -1.69E-46 |
| MS.gene053918 | MS.gene80096 | 0.86169 | 8.59E-64 | -1.69E-46 |
| MS.gene053918 | MS.gene83940 | 0.804113 | 2.52E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053918.t1 | MTR_5g053250 | 96.429 | 140 | 5 | 0 | 2 | 141 | 4 | 143 | 1.04e-92 | 271 |
| MS.gene053918.t1 | MTR_5g053250 | 80.838 | 167 | 5 | 1 | 2 | 141 | 4 | 170 | 1.62e-77 | 233 |
| MS.gene053918.t1 | MTR_5g053250 | 96.386 | 83 | 3 | 0 | 59 | 141 | 1 | 83 | 9.16e-52 | 164 |
| MS.gene053918.t1 | MTR_1g100643 | 40.714 | 140 | 75 | 4 | 1 | 138 | 1 | 134 | 1.07e-23 | 94.0 |
| MS.gene053918.t1 | MTR_6g017105 | 39.706 | 136 | 77 | 3 | 1 | 135 | 1 | 132 | 4.08e-23 | 92.8 |
| MS.gene053918.t1 | MTR_1g033360 | 38.168 | 131 | 74 | 3 | 14 | 142 | 15 | 140 | 4.71e-22 | 89.4 |
| MS.gene053918.t1 | MTR_1g100643 | 45.679 | 81 | 43 | 1 | 59 | 138 | 1 | 81 | 3.00e-16 | 73.2 |
| MS.gene053918.t1 | MTR_1g033390 | 31.538 | 130 | 84 | 4 | 14 | 142 | 9 | 134 | 1.83e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053918.t1 | AT1G26100 | 59.859 | 142 | 46 | 1 | 1 | 142 | 1 | 131 | 5.88e-51 | 164 |
| MS.gene053918.t1 | AT5G38630 | 44.275 | 131 | 64 | 5 | 9 | 136 | 9 | 133 | 1.05e-26 | 102 |
| MS.gene053918.t1 | AT4G25570 | 39.552 | 134 | 76 | 3 | 9 | 141 | 49 | 178 | 1.16e-24 | 97.8 |
| MS.gene053918.t1 | AT4G25570 | 39.552 | 134 | 76 | 3 | 9 | 141 | 8 | 137 | 1.95e-24 | 96.3 |
| MS.gene053918.t1 | AT1G14730 | 30.556 | 144 | 90 | 4 | 14 | 152 | 20 | 158 | 7.06e-13 | 65.1 |
Find 59 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTAGCTTCTGGGATATT+TGG | 0.112597 | 5.3:+42996244 | MS.gene053918:CDS |
| TAGCATTTCTTGTTCTCTTC+TGG | 0.118815 | 5.3:+42995804 | MS.gene053918:CDS |
| CAAGGGGTGGCTTTAGCTTC+TGG | 0.175443 | 5.3:+42996235 | MS.gene053918:CDS |
| GAATGTTTGTGCAGCAATTT+TGG | 0.224729 | 5.3:+42996156 | MS.gene053918:intron |
| TTACCTTGGCATGTATTTCT+TGG | 0.229367 | 5.3:+42998057 | MS.gene053918:CDS |
| TTGATTTGTGTATCCCTCTT+TGG | 0.260850 | 5.3:+42996337 | MS.gene053918:CDS |
| CTTTAGCTTCTGGGATATTT+GGG | 0.267158 | 5.3:+42996245 | MS.gene053918:CDS |
| CTTCTGGGATATTTGGGATT+TGG | 0.279862 | 5.3:+42996251 | MS.gene053918:CDS |
| TCCTGTTGAGGAAGAGAATT+AGG | 0.298620 | 5.3:-42995860 | None:intergenic |
| ATTTCTACAGCCTTCATTCA+TGG | 0.299138 | 5.3:+42996308 | MS.gene053918:CDS |
| CTCTTTCTTGCGAGAGTTTG+TGG | 0.301862 | 5.3:+42995773 | MS.gene053918:CDS |
| GCAGTGGCTTCTTGAACTTT+TGG | 0.301868 | 5.3:+42997998 | MS.gene053918:intron |
| AAGGGGTGGCTTTAGCTTCT+GGG | 0.303519 | 5.3:+42996236 | MS.gene053918:CDS |
| AGCATTTCTTGTTCTCTTCT+GGG | 0.319777 | 5.3:+42995805 | MS.gene053918:CDS |
| TACTACCTTCTCCACTTAAA+AGG | 0.321243 | 5.3:-42996023 | None:intergenic |
| CCACAATCCCATCATTTACT+TGG | 0.326307 | 5.3:-42996282 | None:intergenic |
| CATCCTGTGCTCATGGTCAT+TGG | 0.339718 | 5.3:+42995994 | MS.gene053918:CDS |
| TCTTGTTCTCTTCTGGGCTC+TGG | 0.357755 | 5.3:+42995811 | MS.gene053918:CDS |
| GCAGTAGCAACGGCGGAAAC+TGG | 0.361598 | 5.3:+42998099 | MS.gene053918:CDS |
| TCCTAATTCTCTTCCTCAAC+AGG | 0.404001 | 5.3:+42995859 | MS.gene053918:CDS |
| TGTATCCCTCTTTGGAGCTC+AGG | 0.406685 | 5.3:+42996345 | MS.gene053918:CDS |
| TAGATGGTTGCCTGGGTCAA+GGG | 0.416984 | 5.3:+42996183 | MS.gene053918:CDS |
| CTGCCAATGCATAAGTGTAT+AGG | 0.426996 | 5.3:-42998080 | None:intergenic |
| ACAAAATTCCAAGTAAATGA+TGG | 0.437217 | 5.3:+42996274 | MS.gene053918:CDS |
| TACAGCCTTCATTCATGGAT+GGG | 0.445813 | 5.3:+42996313 | MS.gene053918:CDS |
| CATGGACTCAGTGCTGTGTT+TGG | 0.448440 | 5.3:-42998166 | None:intergenic |
| ATAGATGGTTGCCTGGGTCA+AGG | 0.449560 | 5.3:+42996182 | MS.gene053918:CDS |
| GAAGAGAATTAGGAGTATTG+AGG | 0.459271 | 5.3:-42995850 | None:intergenic |
| AAATGCGATCAGTGAGGATA+AGG | 0.461868 | 5.3:+42998031 | MS.gene053918:CDS |
| TCGGTGCATTTATGTCTTCA+AGG | 0.466772 | 5.3:+42996217 | MS.gene053918:CDS |
| TTGGTGCATAGATGGTTGCC+TGG | 0.471390 | 5.3:+42996175 | MS.gene053918:CDS |
| GGTTCTCCATCCTGTGCTCA+TGG | 0.477323 | 5.3:+42995987 | MS.gene053918:intron |
| CTACAGCCTTCATTCATGGA+TGG | 0.480089 | 5.3:+42996312 | MS.gene053918:CDS |
| AGATGGTTGCCTGGGTCAAG+GGG | 0.483244 | 5.3:+42996184 | MS.gene053918:CDS |
| AAGAGCAAAGGGAGTAGTGA+GGG | 0.491250 | 5.3:-42995755 | None:intergenic |
| CTCTCGCAAGAAAGAGCAAA+GGG | 0.500913 | 5.3:-42995766 | None:intergenic |
| CGGTGCATTTATGTCTTCAA+GGG | 0.507370 | 5.3:+42996218 | MS.gene053918:CDS |
| CAAAATTCCAAGTAAATGAT+GGG | 0.535853 | 5.3:+42996275 | MS.gene053918:CDS |
| CCAAGTAAATGATGGGATTG+TGG | 0.538655 | 5.3:+42996282 | MS.gene053918:CDS |
| TCAAACCCATCCATGAATGA+AGG | 0.539092 | 5.3:-42996318 | None:intergenic |
| GCATTTATGTCTTCAAGGGG+TGG | 0.549961 | 5.3:+42996222 | MS.gene053918:CDS |
| TGGCCTATACACTTATGCAT+TGG | 0.552843 | 5.3:+42998077 | MS.gene053918:CDS |
| TCACTGATCGCATTTCTCCT+CGG | 0.562616 | 5.3:-42998023 | None:intergenic |
| AGGCCAAGAAATACATGCCA+AGG | 0.572983 | 5.3:-42998060 | None:intergenic |
| TGGTGCATAGATGGTTGCCT+GGG | 0.586545 | 5.3:+42996176 | MS.gene053918:CDS |
| TTATGCATTGGCAGTAGCAA+CGG | 0.591173 | 5.3:+42998089 | MS.gene053918:CDS |
| AATCCAATGACCATGAGCAC+AGG | 0.602677 | 5.3:-42995997 | None:intergenic |
| CAATGACCATGAGCACAGGA+TGG | 0.614301 | 5.3:-42995993 | None:intergenic |
| TGAGGATAAGGATCTTACCT+TGG | 0.620818 | 5.3:+42998043 | MS.gene053918:CDS |
| GATGGTTGCCTGGGTCAAGG+GGG | 0.624454 | 5.3:+42996185 | MS.gene053918:CDS |
| ACTCTCGCAAGAAAGAGCAA+AGG | 0.634673 | 5.3:-42995767 | None:intergenic |
| TACTCACCTGAGCTCCAAAG+AGG | 0.638028 | 5.3:-42996351 | None:intergenic |
| ACTCACCTGAGCTCCAAAGA+GGG | 0.638153 | 5.3:-42996350 | None:intergenic |
| TGCATTGGCAGTAGCAACGG+CGG | 0.640059 | 5.3:+42998092 | MS.gene053918:CDS |
| GGTGCATTTATGTCTTCAAG+GGG | 0.646132 | 5.3:+42996219 | MS.gene053918:CDS |
| AAAGAGCAAAGGGAGTAGTG+AGG | 0.647530 | 5.3:-42995756 | None:intergenic |
| GCATAGATGAGATCCTGTTG+AGG | 0.669004 | 5.3:-42995872 | None:intergenic |
| GAGTAGTGAGGGAAAGACAG+TGG | 0.669481 | 5.3:-42995744 | None:intergenic |
| GAGGAGAAATGCGATCAGTG+AGG | 0.738861 | 5.3:+42998025 | MS.gene053918:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTTGATAAAAACTAA+AGG | + | chr5.3:42996585-42996604 | MS.gene053918:intron | 10.0% |
| !! | AATAATTTGATAAAAACTAA+AGG | - | chr5.3:42996604-42996585 | None:intergenic | 10.0% |
| !! | TTGATGTAATTAAATAAAAA+GGG | - | chr5.3:42995928-42995947 | None:intergenic | 10.0% |
| !! | TTTGATGTAATTAAATAAAA+AGG | - | chr5.3:42995929-42995948 | None:intergenic | 10.0% |
| !!! | TTCTAAATTAATTTTTACTT+AGG | + | chr5.3:42996412-42996431 | MS.gene053918:intron | 10.0% |
| !!! | TTTAATTTTAATTTAATTGC+AGG | + | chr5.3:42995966-42995985 | MS.gene053918:intron | 10.0% |
| !! | GATAATAACAATTCATAATT+GGG | - | chr5.3:42997656-42997675 | None:intergenic | 15.0% |
| !! | TGATAATAACAATTCATAAT+TGG | - | chr5.3:42997657-42997676 | None:intergenic | 15.0% |
| !! | AAATATTATGTATTGGGATT+AGG | + | chr5.3:42996066-42996085 | MS.gene053918:intron | 20.0% |
| !! | AACCCAAAAATATTATGTAT+TGG | + | chr5.3:42996059-42996078 | MS.gene053918:intron | 20.0% |
| !! | AATACATGTATGTTAATTGA+TGG | + | chr5.3:42996487-42996506 | MS.gene053918:intron | 20.0% |
| !! | ACACAATTAATTTCTATCAA+TGG | - | chr5.3:42997731-42997750 | None:intergenic | 20.0% |
| !! | ACCCAAAAATATTATGTATT+GGG | + | chr5.3:42996060-42996079 | MS.gene053918:intron | 20.0% |
| !! | AGCAACTAAATTGAAATAAA+AGG | - | chr5.3:42997586-42997605 | None:intergenic | 20.0% |
| !! | TAATGAAATCAAGTCATTAT+TGG | + | chr5.3:42996099-42996118 | MS.gene053918:intron | 20.0% |
| !!! | ATCCCAATACATAATATTTT+TGG | - | chr5.3:42996065-42996084 | None:intergenic | 20.0% |
| !!! | GCAAAATTCTTTTATGTATA+TGG | + | chr5.3:42997922-42997941 | MS.gene053918:intron | 20.0% |
| !!! | TATGTTAACTGATGTATTTT+TGG | + | chr5.3:42997290-42997309 | MS.gene053918:intron | 20.0% |
| !!! | TCCCAATACATAATATTTTT+GGG | - | chr5.3:42996064-42996083 | None:intergenic | 20.0% |
| ! | AAAGGATAACAATAAGAAAC+TGG | - | chr5.3:42997568-42997587 | None:intergenic | 25.0% |
| ! | AACAATAAGAAACTGGAATT+TGG | - | chr5.3:42997561-42997580 | None:intergenic | 25.0% |
| ! | AATGCATATATGTTAAGTGA+TGG | - | chr5.3:42997038-42997057 | None:intergenic | 25.0% |
| ! | ACAAAATTCCAAGTAAATGA+TGG | + | chr5.3:42996274-42996293 | MS.gene053918:CDS | 25.0% |
| ! | ATTTCTCACAATTTAAGTGA+GGG | + | chr5.3:42997237-42997256 | MS.gene053918:intron | 25.0% |
| ! | CAAAATTCCAAGTAAATGAT+GGG | + | chr5.3:42996275-42996294 | MS.gene053918:CDS | 25.0% |
| ! | TATTTCTCACAATTTAAGTG+AGG | + | chr5.3:42997236-42997255 | MS.gene053918:intron | 25.0% |
| ! | TTAATTGATTGCGATATTGT+CGG | - | chr5.3:42997063-42997082 | None:intergenic | 25.0% |
| ! | TTGATTGATTGTGATATTGT+TGG | - | chr5.3:42997169-42997188 | None:intergenic | 25.0% |
| !! | ATTGGATTTATCCTTTTAAG+TGG | + | chr5.3:42996012-42996031 | MS.gene053918:CDS | 25.0% |
| !! | TATGTTGATTGATTGTGATA+TGG | - | chr5.3:42997140-42997159 | None:intergenic | 25.0% |
| !! | TTTTATGGTGAACTTTACAA+TGG | - | chr5.3:42996660-42996679 | None:intergenic | 25.0% |
| !!! | TGAGAGTGTATTGTTTTTTA+TGG | - | chr5.3:42996869-42996850 | None:intergenic | 25.0% |
| !!! | TTAATTGATGGTGATTTTGT+TGG | + | chr5.3:42996499-42996518 | MS.gene053918:intron | 25.0% |
| AAAGGGAATGAAGAAAATAG+AGG | - | chr5.3:42995911-42995930 | None:intergenic | 30.0% | |
| ATCAGGACATACATGAATAA+AGG | - | chr5.3:42997612-42997631 | None:intergenic | 30.0% | |
| ATGACTTAAATTGGAGATAG+AGG | + | chr5.3:42996810-42996829 | MS.gene053918:intron | 30.0% | |
| ATGACTTAAATTGGAGATAG+AGG | - | chr5.3:42996829-42996810 | None:intergenic | 30.0% | |
| ATTTAAGTCATGGCAAAAGT+AGG | + | chr5.3:42996724-42996743 | MS.gene053918:intron | 30.0% | |
| ATTTAAGTCATGGCAAAAGT+AGG | - | chr5.3:42996743-42996724 | None:intergenic | 30.0% | |
| TACTTACTGTATACATAGTG+TGG | - | chr5.3:42997272-42997291 | None:intergenic | 30.0% | |
| TATATGCACAGCAATAACAA+GGG | - | chr5.3:42997763-42997782 | None:intergenic | 30.0% | |
| TCAGGACATACATGAATAAA+GGG | - | chr5.3:42997611-42997630 | None:intergenic | 30.0% | |
| TCTATCTCCAATTTAAGTCA+TGG | + | chr5.3:42996714-42996733 | MS.gene053918:intron | 30.0% | |
| TCTATCTCCAATTTAAGTCA+TGG | - | chr5.3:42996733-42996714 | None:intergenic | 30.0% | |
| TTATATGCACAGCAATAACA+AGG | - | chr5.3:42997764-42997783 | None:intergenic | 30.0% | |
| TTGATTGATTGCGATATTGT+CGG | - | chr5.3:42997099-42997118 | None:intergenic | 30.0% | |
| TTGATTGATTGTGATATGGT+TGG | - | chr5.3:42997136-42997155 | None:intergenic | 30.0% | |
| TTTCTCACAATTTAAGTGAG+GGG | + | chr5.3:42997238-42997257 | MS.gene053918:intron | 30.0% | |
| ! | ACTTTTGCCATGACTTAAAT+TGG | + | chr5.3:42996801-42996820 | MS.gene053918:intron | 30.0% |
| ! | ACTTTTGCCATGACTTAAAT+TGG | - | chr5.3:42996820-42996801 | None:intergenic | 30.0% |
| ! | TGAATTGTTATTATCACCAC+TGG | + | chr5.3:42997661-42997680 | MS.gene053918:intron | 30.0% |
| !! | TTAAGTGATGGAGATTTTGT+TGG | - | chr5.3:42997026-42997045 | None:intergenic | 30.0% |
| !! | TTTATCCTTTTAAGTGGAGA+AGG | + | chr5.3:42996018-42996037 | MS.gene053918:CDS | 30.0% |
| AATCGCTACGTGAATTCAAA+TGG | - | chr5.3:42997531-42997550 | None:intergenic | 35.0% | |
| AGCATTTCTTGTTCTCTTCT+GGG | + | chr5.3:42995805-42995824 | MS.gene053918:CDS | 35.0% | |
| ATATGCACAGCAATAACAAG+GGG | - | chr5.3:42997762-42997781 | None:intergenic | 35.0% | |
| ATTTCTACAGCCTTCATTCA+TGG | + | chr5.3:42996308-42996327 | MS.gene053918:CDS | 35.0% | |
| CAACATGTTGAACTTCGTTA+TGG | - | chr5.3:42997974-42997993 | None:intergenic | 35.0% | |
| CAGGACATACATGAATAAAG+GGG | - | chr5.3:42997610-42997629 | None:intergenic | 35.0% | |
| GCAAAAGTAGGAATTAGTGT+TGG | + | chr5.3:42996736-42996755 | MS.gene053918:intron | 35.0% | |
| GGAAATTGTAAACTAGTGTG+AGG | + | chr5.3:42997804-42997823 | MS.gene053918:intron | 35.0% | |
| TACTACCTTCTCCACTTAAA+AGG | - | chr5.3:42996026-42996045 | None:intergenic | 35.0% | |
| TAGCATTTCTTGTTCTCTTC+TGG | + | chr5.3:42995804-42995823 | MS.gene053918:CDS | 35.0% | |
| TGGAGATAGAGGAAAAAAGA+AGG | + | chr5.3:42996821-42996840 | MS.gene053918:intron | 35.0% | |
| TGGAGATAGAGGAAAAAAGA+AGG | - | chr5.3:42996840-42996821 | None:intergenic | 35.0% | |
| TTACCTTGGCATGTATTTCT+TGG | + | chr5.3:42998057-42998076 | MS.gene053918:CDS | 35.0% | |
| ! | GAATGTTTGTGCAGCAATTT+TGG | + | chr5.3:42996156-42996175 | MS.gene053918:intron | 35.0% |
| ! | TAACTAACGCATGGGTATTT+TGG | - | chr5.3:42997427-42997446 | None:intergenic | 35.0% |
| !! | AGTGTTGGTCTGAAGTAATA+CGG | - | chr5.3:42996774-42996793 | None:intergenic | 35.0% |
| !! | CTTTAGCTTCTGGGATATTT+GGG | + | chr5.3:42996245-42996264 | MS.gene053918:CDS | 35.0% |
| !! | GAAGAGAATTAGGAGTATTG+AGG | - | chr5.3:42995853-42995872 | None:intergenic | 35.0% |
| !! | TTGATTTGTGTATCCCTCTT+TGG | + | chr5.3:42996337-42996356 | MS.gene053918:CDS | 35.0% |
| !!! | GTATTTTGGTCAGTTTGACT+GGG | - | chr5.3:42997413-42997432 | None:intergenic | 35.0% |
| AAATGCGATCAGTGAGGATA+AGG | + | chr5.3:42998031-42998050 | MS.gene053918:CDS | 40.0% | |
| CCACAATCCCATCATTTACT+TGG | - | chr5.3:42996285-42996304 | None:intergenic | 40.0% | |
| CGGTGCATTTATGTCTTCAA+GGG | + | chr5.3:42996218-42996237 | MS.gene053918:CDS | 40.0% | |
| CTGCCAATGCATAAGTGTAT+AGG | - | chr5.3:42998083-42998102 | None:intergenic | 40.0% | |
| GCAAAAGTAGGAGTTAGTGT+TGG | - | chr5.3:42996789-42996808 | None:intergenic | 40.0% | |
| GCGTTAGTTAACTAACGCAA+GGG | + | chr5.3:42997851-42997870 | MS.gene053918:intron | 40.0% | |
| GCGTTAGTTAACTAACGCAT+GGG | - | chr5.3:42997435-42997454 | None:intergenic | 40.0% | |
| GGTGCATTTATGTCTTCAAG+GGG | + | chr5.3:42996219-42996238 | MS.gene053918:CDS | 40.0% | |
| TACAGCCTTCATTCATGGAT+GGG | + | chr5.3:42996313-42996332 | MS.gene053918:CDS | 40.0% | |
| TCAAAAAGTCAAGCCTTGCA+CGG | - | chr5.3:42997699-42997718 | None:intergenic | 40.0% | |
| TCAAACCCATCCATGAATGA+AGG | - | chr5.3:42996321-42996340 | None:intergenic | 40.0% | |
| TCCTAATTCTCTTCCTCAAC+AGG | + | chr5.3:42995859-42995878 | MS.gene053918:CDS | 40.0% | |
| TCCTGTTGAGGAAGAGAATT+AGG | - | chr5.3:42995863-42995882 | None:intergenic | 40.0% | |
| TCGGTGCATTTATGTCTTCA+AGG | + | chr5.3:42996217-42996236 | MS.gene053918:CDS | 40.0% | |
| TGAGGATAAGGATCTTACCT+TGG | + | chr5.3:42998043-42998062 | MS.gene053918:CDS | 40.0% | |
| TGCGTTAGTTAACTAACGCA+AGG | + | chr5.3:42997850-42997869 | MS.gene053918:intron | 40.0% | |
| TGGCCTATACACTTATGCAT+TGG | + | chr5.3:42998077-42998096 | MS.gene053918:CDS | 40.0% | |
| TTCAACATGTTGCATTGCAG+TGG | + | chr5.3:42997982-42998001 | MS.gene053918:intron | 40.0% | |
| TTGCGTGAGTTAACTTACAC+TGG | + | chr5.3:42997486-42997505 | MS.gene053918:intron | 40.0% | |
| ! | AACTGCTGTAGCTGTTCTTT+TGG | + | chr5.3:42997783-42997802 | MS.gene053918:intron | 40.0% |
| ! | AAGTGAAAAGCGCAACAATC+AGG | - | chr5.3:42997629-42997648 | None:intergenic | 40.0% |
| ! | CCAAGTAAATGATGGGATTG+TGG | + | chr5.3:42996282-42996301 | MS.gene053918:CDS | 40.0% |
| ! | TTATGCATTGGCAGTAGCAA+CGG | + | chr5.3:42998089-42998108 | MS.gene053918:CDS | 40.0% |
| !! | CAGCAATTTTGGTGCATAGA+TGG | + | chr5.3:42996167-42996186 | MS.gene053918:intron | 40.0% |
| !! | CTTCTGGGATATTTGGGATT+TGG | + | chr5.3:42996251-42996270 | MS.gene053918:CDS | 40.0% |
| !! | GCTTTAGCTTCTGGGATATT+TGG | + | chr5.3:42996244-42996263 | MS.gene053918:CDS | 40.0% |
| !!! | AACTAACGCAAGGGCATTTT+TGG | + | chr5.3:42997860-42997879 | MS.gene053918:intron | 40.0% |
| !!! | GCATTTTTGGCATGGCTAAA+AGG | + | chr5.3:42997873-42997892 | MS.gene053918:intron | 40.0% |
| !!! | GGTATTTTGGTCAGTTTGAC+TGG | - | chr5.3:42997414-42997433 | None:intergenic | 40.0% |
| AAAGAGCAAAGGGAGTAGTG+AGG | - | chr5.3:42995759-42995778 | None:intergenic | 45.0% | |
| AAGAGCAAAGGGAGTAGTGA+GGG | - | chr5.3:42995758-42995777 | None:intergenic | 45.0% | |
| AATCCAATGACCATGAGCAC+AGG | - | chr5.3:42996000-42996019 | None:intergenic | 45.0% | |
| ACGGTATATTACGACACCAG+TGG | - | chr5.3:42997680-42997699 | None:intergenic | 45.0% | |
| ACTCTCGCAAGAAAGAGCAA+AGG | - | chr5.3:42995770-42995789 | None:intergenic | 45.0% | |
| AGGCCAAGAAATACATGCCA+AGG | - | chr5.3:42998063-42998082 | None:intergenic | 45.0% | |
| CTACAGCCTTCATTCATGGA+TGG | + | chr5.3:42996312-42996331 | MS.gene053918:CDS | 45.0% | |
| CTCTCGCAAGAAAGAGCAAA+GGG | - | chr5.3:42995769-42995788 | None:intergenic | 45.0% | |
| CTCTTTCTTGCGAGAGTTTG+TGG | + | chr5.3:42995773-42995792 | MS.gene053918:CDS | 45.0% | |
| GCATAGATGAGATCCTGTTG+AGG | - | chr5.3:42995875-42995894 | None:intergenic | 45.0% | |
| GCATTTATGTCTTCAAGGGG+TGG | + | chr5.3:42996222-42996241 | MS.gene053918:CDS | 45.0% | |
| GGCGTTAGTTAACTAACGCA+TGG | - | chr5.3:42997436-42997455 | None:intergenic | 45.0% | |
| GTCAAGGGGGTTGAAGAAAT+CGG | + | chr5.3:42996198-42996217 | MS.gene053918:CDS | 45.0% | |
| GTGTCGTAATATACCGTGCA+AGG | + | chr5.3:42997683-42997702 | MS.gene053918:intron | 45.0% | |
| TCACTGATCGCATTTCTCCT+CGG | - | chr5.3:42998026-42998045 | None:intergenic | 45.0% | |
| TTTGGTCAGTTTGACTGGGT+GGG | - | chr5.3:42997409-42997428 | None:intergenic | 45.0% | |
| ! | CCAGCGTGAATTAAGTTGCA+CGG | - | chr5.3:42997457-42997476 | None:intergenic | 45.0% |
| ! | GCAGTGGCTTCTTGAACTTT+TGG | + | chr5.3:42997998-42998017 | MS.gene053918:intron | 45.0% |
| ! | TTCTTGAACTTTTGGCACCG+AGG | + | chr5.3:42998006-42998025 | MS.gene053918:CDS | 45.0% |
| ! | TTTTGGTCAGTTTGACTGGG+TGG | - | chr5.3:42997410-42997429 | None:intergenic | 45.0% |
| ACTCACCTGAGCTCCAAAGA+GGG | - | chr5.3:42996353-42996372 | None:intergenic | 50.0% | |
| ATAGATGGTTGCCTGGGTCA+AGG | + | chr5.3:42996182-42996201 | MS.gene053918:CDS | 50.0% | |
| CAATGACCATGAGCACAGGA+TGG | - | chr5.3:42995996-42996015 | None:intergenic | 50.0% | |
| CATCCTGTGCTCATGGTCAT+TGG | + | chr5.3:42995994-42996013 | MS.gene053918:CDS | 50.0% | |
| CCGTGCAACTTAATTCACGC+TGG | + | chr5.3:42997454-42997473 | MS.gene053918:intron | 50.0% | |
| GAGGAGAAATGCGATCAGTG+AGG | + | chr5.3:42998025-42998044 | MS.gene053918:CDS | 50.0% | |
| GAGTAGTGAGGGAAAGACAG+TGG | - | chr5.3:42995747-42995766 | None:intergenic | 50.0% | |
| GCACAGCAATAACAAGGGGT+TGG | - | chr5.3:42997758-42997777 | None:intergenic | 50.0% | |
| TACTCACCTGAGCTCCAAAG+AGG | - | chr5.3:42996354-42996373 | None:intergenic | 50.0% | |
| TAGATGGTTGCCTGGGTCAA+GGG | + | chr5.3:42996183-42996202 | MS.gene053918:CDS | 50.0% | |
| TCTTGTTCTCTTCTGGGCTC+TGG | + | chr5.3:42995811-42995830 | MS.gene053918:CDS | 50.0% | |
| TGGTGCATAGATGGTTGCCT+GGG | + | chr5.3:42996176-42996195 | MS.gene053918:CDS | 50.0% | |
| TTGGTGCATAGATGGTTGCC+TGG | + | chr5.3:42996175-42996194 | MS.gene053918:CDS | 50.0% | |
| ! | AAGGCGCGAGTGAAAAGTGT+AGG | + | chr5.3:42997892-42997911 | MS.gene053918:intron | 50.0% |
| ! | AGGCGCGAGTGAAAAGTGTA+GGG | + | chr5.3:42997893-42997912 | MS.gene053918:intron | 50.0% |
| !! | AAGGGGTGGCTTTAGCTTCT+GGG | + | chr5.3:42996236-42996255 | MS.gene053918:CDS | 50.0% |
| !! | TGTATCCCTCTTTGGAGCTC+AGG | + | chr5.3:42996345-42996364 | MS.gene053918:CDS | 50.0% |
| !!! | ACGCAAGGGCATTTTTGGCA+TGG | + | chr5.3:42997865-42997884 | MS.gene053918:intron | 50.0% |
| AGATGGTTGCCTGGGTCAAG+GGG | + | chr5.3:42996184-42996203 | MS.gene053918:CDS | 55.0% | |
| GGTTCTCCATCCTGTGCTCA+TGG | + | chr5.3:42995987-42996006 | MS.gene053918:intron | 55.0% | |
| TTCTTCAACCCCCTTGACCC+AGG | - | chr5.3:42996196-42996215 | None:intergenic | 55.0% | |
| ! | GCGCGAGTGAAAAGTGTAGG+GGG | + | chr5.3:42997895-42997914 | MS.gene053918:intron | 55.0% |
| ! | GGCGCGAGTGAAAAGTGTAG+GGG | + | chr5.3:42997894-42997913 | MS.gene053918:intron | 55.0% |
| ! | GTGGGAGCGAAAAGTGCAGA+GGG | - | chr5.3:42997391-42997410 | None:intergenic | 55.0% |
| ! | TGCATTGGCAGTAGCAACGG+CGG | + | chr5.3:42998092-42998111 | MS.gene053918:CDS | 55.0% |
| ! | TGGGAGCGAAAAGTGCAGAG+GGG | - | chr5.3:42997390-42997409 | None:intergenic | 55.0% |
| !! | CAAGGGGTGGCTTTAGCTTC+TGG | + | chr5.3:42996235-42996254 | MS.gene053918:CDS | 55.0% |
| GATGGTTGCCTGGGTCAAGG+GGG | + | chr5.3:42996185-42996204 | MS.gene053918:CDS | 60.0% | |
| GCAGTAGCAACGGCGGAAAC+TGG | + | chr5.3:42998099-42998118 | MS.gene053918:CDS | 60.0% | |
| ! | GGTGGGAGCGAAAAGTGCAG+AGG | - | chr5.3:42997392-42997411 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 42995740 | 42998181 | 42995740 | ID=MS.gene053918 |
| chr5.3 | mRNA | 42995740 | 42998181 | 42995740 | ID=MS.gene053918.t1;Parent=MS.gene053918 |
| chr5.3 | exon | 42995740 | 42995895 | 42995740 | ID=MS.gene053918.t1.exon1;Parent=MS.gene053918.t1 |
| chr5.3 | CDS | 42995740 | 42995895 | 42995740 | ID=cds.MS.gene053918.t1;Parent=MS.gene053918.t1 |
| chr5.3 | exon | 42995988 | 42996039 | 42995988 | ID=MS.gene053918.t1.exon2;Parent=MS.gene053918.t1 |
| chr5.3 | CDS | 42995988 | 42996039 | 42995988 | ID=cds.MS.gene053918.t1;Parent=MS.gene053918.t1 |
| chr5.3 | exon | 42996170 | 42996366 | 42996170 | ID=MS.gene053918.t1.exon3;Parent=MS.gene053918.t1 |
| chr5.3 | CDS | 42996170 | 42996366 | 42996170 | ID=cds.MS.gene053918.t1;Parent=MS.gene053918.t1 |
| chr5.3 | exon | 42998002 | 42998181 | 42998002 | ID=MS.gene053918.t1.exon4;Parent=MS.gene053918.t1 |
| chr5.3 | CDS | 42998002 | 42998181 | 42998002 | ID=cds.MS.gene053918.t1;Parent=MS.gene053918.t1 |
| Gene Sequence |
| Protein sequence |
