AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80137

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80137.t1 MTR_5g053390 92.444 225 17 0 1 225 1 225 3.52e-157 435
MS.gene80137.t1 MTR_2g085280 72.881 236 64 0 1 236 1 236 3.32e-126 357
MS.gene80137.t1 MTR_2g085250 72.881 236 64 0 1 236 1 236 9.92e-126 356
MS.gene80137.t1 MTR_5g055100 72.458 236 65 0 1 236 1 236 5.19e-125 354
MS.gene80137.t1 MTR_5g045560 75.983 229 55 0 1 229 1 229 5.29e-124 351
MS.gene80137.t1 MTR_8g043650 66.953 233 77 0 1 233 1 233 2.16e-113 325
MS.gene80137.t1 MTR_1g075600 68.889 225 70 0 1 225 1 225 4.21e-110 316
MS.gene80137.t1 MTR_1g077360 66.667 225 75 0 1 225 1 225 3.02e-106 306
MS.gene80137.t1 MTR_1g105910 64.444 225 80 0 1 225 1 225 4.50e-105 303
MS.gene80137.t1 MTR_1g105920 66.216 222 75 0 1 222 1 222 2.18e-102 296
MS.gene80137.t1 MTR_2g030740 65.315 222 77 0 1 222 1 222 9.12e-102 295
MS.gene80137.t1 MTR_1g012570 65.315 222 77 0 1 222 1 222 2.71e-98 286
MS.gene80137.t1 MTR_0121s0080 60.086 233 92 1 1 233 1 232 5.67e-96 280
MS.gene80137.t1 MTR_3g030770 61.702 235 72 3 1 225 1 227 2.31e-95 278
MS.gene80137.t1 MTR_1g108510 61.702 235 72 3 1 225 1 227 3.46e-95 278
MS.gene80137.t1 MTR_3g052920 62.100 219 83 0 1 219 1 219 2.07e-94 276
MS.gene80137.t1 MTR_2g093190 62.128 235 71 3 1 225 1 227 6.00e-94 275
MS.gene80137.t1 MTR_1g105905 60.185 216 86 0 18 233 1 216 6.63e-92 270
MS.gene80137.t1 MTR_1g108580 57.872 235 81 3 1 225 1 227 1.31e-86 256
MS.gene80137.t1 MTR_3g052870 58.904 219 71 2 1 219 1 200 4.80e-83 247
MS.gene80137.t1 MTR_1g106070 64.835 182 64 0 1 182 1 182 2.34e-80 239
MS.gene80137.t1 MTR_7g062350 55.505 218 96 1 19 236 31 247 4.66e-80 240
MS.gene80137.t1 MTR_1g075570 57.865 178 61 1 18 195 1 164 1.29e-57 180
MS.gene80137.t1 MTR_3g080940 44.724 199 106 1 1 195 1 199 2.57e-53 171
MS.gene80137.t1 MTR_0121s0100 65.116 129 45 0 1 129 1 129 9.40e-52 164
MS.gene80137.t1 MTR_3g030780 62.097 124 47 0 1 124 1 124 8.25e-49 157
MS.gene80137.t1 MTR_3g067910 62.037 108 41 0 21 128 2 109 2.50e-40 134
MS.gene80137.t1 MTR_8g086290 38.650 163 96 2 5 167 8 166 2.16e-31 114
MS.gene80137.t1 MTR_2g105290 36.095 169 102 2 5 172 8 171 7.25e-30 110
MS.gene80137.t1 MTR_7g028448 40.000 155 81 3 5 159 8 150 7.25e-29 107
MS.gene80137.t1 MTR_4g036915 40.000 155 81 3 5 159 8 150 7.25e-29 107
MS.gene80137.t1 MTR_3g067875 87.500 56 7 0 18 73 1 56 4.02e-28 102
MS.gene80137.t1 MTR_8g051580 41.985 131 64 3 9 128 2 131 8.20e-25 97.1
MS.gene80137.t1 MTR_1g047550 56.338 71 31 0 9 79 2 72 7.36e-24 94.4
MS.gene80137.t1 MTR_8g079502 56.338 71 31 0 9 79 2 72 1.05e-23 94.4
MS.gene80137.t1 MTR_3g067870 70.312 64 19 0 16 79 83 146 1.54e-23 93.2
MS.gene80137.t1 MTR_4g127140 36.464 181 101 4 5 175 8 184 1.90e-23 93.6
MS.gene80137.t1 MTR_1g063160 43.396 106 56 2 9 111 2 106 6.91e-23 92.0
MS.gene80137.t1 MTR_1g108500 48.673 113 35 2 7 117 93 184 2.52e-22 93.6
MS.gene80137.t1 MTR_1g054265 55.072 69 31 0 9 77 2 70 4.87e-22 89.4
MS.gene80137.t1 MTR_4g131030 52.113 71 34 0 9 79 2 72 1.16e-21 89.7
MS.gene80137.t1 MTR_8g046350 49.351 77 39 0 9 85 2 78 4.60e-21 86.7
MS.gene80137.t1 MTR_3g067915 48.387 93 48 0 33 125 3 95 6.58e-21 84.3
MS.gene80137.t1 MTR_4g094632 36.667 150 78 5 9 158 2 134 6.76e-20 83.6
MS.gene80137.t1 MTR_4g094638 53.623 69 32 0 9 77 2 70 2.71e-18 79.7
MS.gene80137.t1 MTR_4g093970 44.660 103 49 4 10 104 29 131 1.16e-17 79.3
MS.gene80137.t1 MTR_8g022970 34.641 153 97 2 8 159 17 167 2.51e-17 77.4
MS.gene80137.t1 MTR_0003s0590 43.564 101 42 2 9 94 2 102 2.80e-17 78.6
MS.gene80137.t1 MTR_3g437790 34.483 145 74 5 26 159 30 164 2.96e-17 77.4
MS.gene80137.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 3.13e-17 78.2
MS.gene80137.t1 MTR_3g005530 50.000 68 34 0 9 76 2 69 5.04e-17 77.4
MS.gene80137.t1 MTR_8g033270 49.367 79 39 1 9 86 2 80 1.52e-16 76.6
MS.gene80137.t1 MTR_3g452380 45.946 74 40 0 3 76 11 84 1.61e-16 76.3
MS.gene80137.t1 MTR_4g109830 32.558 172 90 6 9 175 2 152 1.97e-16 75.9
MS.gene80137.t1 MTR_4g102530 49.296 71 36 0 10 80 3 73 2.54e-16 75.1
MS.gene80137.t1 MTR_7g075870 53.731 67 31 0 10 76 3 69 2.68e-16 75.1
MS.gene80137.t1 MTR_8g033220 31.868 182 95 4 10 173 3 173 2.87e-16 75.5
MS.gene80137.t1 MTR_8g033220 31.868 182 95 4 10 173 3 173 2.91e-16 75.5
MS.gene80137.t1 MTR_1g053070 52.941 68 32 0 9 76 2 69 5.51e-16 75.1
MS.gene80137.t1 MTR_5g032150 48.529 68 35 0 9 76 2 69 1.19e-15 73.9
MS.gene80137.t1 MTR_8g087860 48.529 68 35 0 9 76 18 85 1.26e-15 73.9
MS.gene80137.t1 MTR_5g032520 48.529 68 35 0 9 76 2 69 1.62e-15 73.6
MS.gene80137.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 2.04e-15 73.9
MS.gene80137.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.66e-15 72.8
MS.gene80137.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.68e-15 73.2
MS.gene80137.t1 MTR_2g017865 48.529 68 35 0 9 76 17 84 3.67e-15 72.8
MS.gene80137.t1 MTR_7g075870 52.941 68 31 1 10 76 3 70 5.42e-15 71.6
MS.gene80137.t1 MTR_7g016630 46.377 69 36 1 9 76 2 70 7.10e-15 72.0
MS.gene80137.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 1.18e-14 71.2
MS.gene80137.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 1.61e-14 70.1
MS.gene80137.t1 MTR_5g066960 50.877 57 28 0 9 65 2 58 2.63e-14 65.9
MS.gene80137.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 3.60e-14 70.1
MS.gene80137.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 4.36e-14 68.6
MS.gene80137.t1 MTR_3g109930 36.029 136 79 4 27 159 20 150 4.53e-14 68.6
MS.gene80137.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 4.61e-14 69.7
MS.gene80137.t1 MTR_4g084740 47.887 71 36 1 9 78 2 72 5.91e-14 70.5
MS.gene80137.t1 MTR_3g102570 47.887 71 36 1 9 78 2 72 9.66e-14 69.7
MS.gene80137.t1 MTR_1g029670 44.286 70 37 1 9 76 2 71 1.13e-13 67.4
MS.gene80137.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 1.17e-13 68.6
MS.gene80137.t1 MTR_8g066260 44.928 69 37 1 9 76 2 70 1.34e-13 68.2
MS.gene80137.t1 MTR_2g461710 51.786 56 27 0 9 64 2 57 2.27e-13 63.5
MS.gene80137.t1 MTR_7g075850 43.902 82 43 2 9 87 2 83 2.39e-13 67.8
MS.gene80137.t1 MTR_5g046790 42.169 83 42 2 9 85 2 84 2.48e-13 67.0
MS.gene80137.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 4.06e-13 64.3
MS.gene80137.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 5.01e-13 66.6
MS.gene80137.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 5.17e-13 66.6
MS.gene80137.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 1.38e-12 65.5
MS.gene80137.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 1.40e-12 65.5
MS.gene80137.t1 MTR_4g093030 48.387 62 32 0 9 70 2 63 1.81e-12 63.5
MS.gene80137.t1 MTR_3g084980 44.928 69 37 1 9 76 2 70 1.97e-12 65.1
MS.gene80137.t1 MTR_3g113030 45.902 61 33 0 9 69 2 62 4.22e-12 63.9
MS.gene80137.t1 MTR_4g051538 30.846 201 107 7 1 185 1 185 1.04e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80137.t1 AT5G60440 53.293 167 75 2 5 168 3 169 2.95e-54 176
MS.gene80137.t1 AT2G24840 49.068 161 71 3 9 163 63 218 3.42e-43 147
MS.gene80137.t1 AT1G01530 46.584 161 81 4 4 162 2 159 2.60e-38 134
MS.gene80137.t1 AT1G65360 39.485 233 124 6 5 230 3 225 3.54e-38 133
MS.gene80137.t1 AT4G36590 46.341 164 78 4 5 160 3 164 3.75e-37 130
MS.gene80137.t1 AT3G04100 34.969 163 100 4 2 159 7 168 2.97e-24 96.3
MS.gene80137.t1 AT2G34440 36.486 148 92 2 9 156 2 147 6.30e-23 92.0
MS.gene80137.t1 AT3G66656 41.176 119 66 1 9 123 2 120 1.88e-22 90.9
MS.gene80137.t1 AT1G72350 34.211 152 67 2 9 160 43 161 1.15e-21 90.1
MS.gene80137.t1 AT2G45660 55.882 68 30 0 10 77 3 70 1.43e-18 80.1
MS.gene80137.t1 AT2G45660 55.882 68 30 0 10 77 3 70 3.17e-18 80.5
MS.gene80137.t1 AT4G22950 53.731 67 31 0 10 76 3 69 3.89e-18 79.3
MS.gene80137.t1 AT5G51870 55.556 72 32 0 5 76 21 92 5.84e-18 79.3
MS.gene80137.t1 AT4G22950 53.731 67 31 0 10 76 3 69 1.06e-17 79.3
MS.gene80137.t1 AT4G22950 53.731 67 31 0 10 76 3 69 1.06e-17 79.3
MS.gene80137.t1 AT1G28460 30.636 173 110 4 5 170 4 173 1.26e-17 78.2
MS.gene80137.t1 AT4G37940 54.412 68 31 0 9 76 2 69 1.46e-17 79.0
MS.gene80137.t1 AT2G45650 29.412 221 116 6 9 208 2 203 1.50e-17 79.3
MS.gene80137.t1 AT4G37940 54.412 68 31 0 9 76 2 69 1.55e-17 78.6
MS.gene80137.t1 AT4G37940 54.412 68 31 0 9 76 2 69 1.86e-17 77.4
MS.gene80137.t1 AT5G51870 56.716 67 29 0 10 76 3 69 2.32e-17 78.2
MS.gene80137.t1 AT5G51870 56.716 67 29 0 10 76 3 69 2.38e-17 77.0
MS.gene80137.t1 AT5G51870 54.054 74 32 1 3 76 8 79 2.66e-17 78.2
MS.gene80137.t1 AT5G51870 56.716 67 29 0 10 76 3 69 3.93e-17 77.8
MS.gene80137.t1 AT2G22540 32.738 168 83 5 9 169 2 146 3.99e-17 78.2
MS.gene80137.t1 AT2G22540 32.738 168 83 5 9 169 2 146 3.99e-17 78.2
MS.gene80137.t1 AT3G57230 50.000 68 34 0 9 76 2 69 6.08e-17 75.5
MS.gene80137.t1 AT3G57390 54.412 68 31 0 9 76 2 69 7.30e-17 77.0
MS.gene80137.t1 AT2G22630 52.941 68 32 0 9 76 2 69 1.19e-16 76.6
MS.gene80137.t1 AT2G22630 52.941 68 32 0 9 76 2 69 1.19e-16 76.6
MS.gene80137.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.35e-16 73.6
MS.gene80137.t1 AT4G09960 48.529 68 35 0 9 76 2 69 1.40e-16 76.3
MS.gene80137.t1 AT4G09960 48.529 68 35 0 9 76 2 69 1.43e-16 76.3
MS.gene80137.t1 AT3G57390 54.412 68 31 0 9 76 2 69 1.61e-16 76.6
MS.gene80137.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.63e-16 74.7
MS.gene80137.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.63e-16 74.7
MS.gene80137.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.63e-16 74.7
MS.gene80137.t1 AT4G09960 48.529 68 35 0 9 76 3 70 1.66e-16 76.3
MS.gene80137.t1 AT3G57230 50.000 68 34 0 9 76 2 69 1.67e-16 76.3
MS.gene80137.t1 AT3G57230 50.000 68 34 0 9 76 2 69 1.67e-16 76.3
MS.gene80137.t1 AT4G09960 48.529 68 35 0 9 76 12 79 1.95e-16 76.3
MS.gene80137.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.95e-16 75.1
MS.gene80137.t1 AT5G13790 52.941 68 32 0 9 76 2 69 2.11e-16 76.6
MS.gene80137.t1 AT1G29962 30.675 163 104 4 5 161 4 163 2.12e-16 75.1
MS.gene80137.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.18e-16 74.3
MS.gene80137.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.18e-16 75.1
MS.gene80137.t1 AT5G13790 52.941 68 32 0 9 76 2 69 2.24e-16 76.6
MS.gene80137.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.35e-16 73.9
MS.gene80137.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.35e-16 73.9
MS.gene80137.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.35e-16 73.9
MS.gene80137.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.35e-16 73.9
MS.gene80137.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.35e-16 73.9
MS.gene80137.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.97e-16 74.7
MS.gene80137.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.97e-16 74.7
MS.gene80137.t1 AT4G09960 48.529 68 35 0 9 76 28 95 3.30e-16 75.9
MS.gene80137.t1 AT4G24540 51.471 68 33 0 9 76 2 69 3.36e-16 75.1
MS.gene80137.t1 AT5G62165 52.239 67 32 0 10 76 3 69 4.04e-16 74.7
MS.gene80137.t1 AT5G62165 52.239 67 32 0 10 76 3 69 4.04e-16 74.7
MS.gene80137.t1 AT5G62165 52.239 67 32 0 10 76 3 69 4.04e-16 74.7
MS.gene80137.t1 AT4G18960 41.748 103 48 2 2 103 11 102 4.53e-16 75.5
MS.gene80137.t1 AT5G10140 50.725 69 33 1 9 76 2 70 4.88e-16 73.9
MS.gene80137.t1 AT4G09960 48.529 68 35 0 9 76 97 164 7.09e-16 75.9
MS.gene80137.t1 AT5G51860 53.731 67 31 0 10 76 3 69 7.95e-16 73.9
MS.gene80137.t1 AT3G54340 31.210 157 75 4 9 133 2 157 1.07e-15 73.9
MS.gene80137.t1 AT5G51860 53.731 67 31 0 10 76 3 69 1.24e-15 73.6
MS.gene80137.t1 AT5G65070 32.979 188 99 8 9 173 2 185 1.31e-15 73.6
MS.gene80137.t1 AT2G42830 48.529 68 35 0 9 76 17 84 1.44e-15 73.9
MS.gene80137.t1 AT2G42830 48.529 68 35 0 9 76 17 84 1.59e-15 73.9
MS.gene80137.t1 AT3G58780 47.887 71 37 0 6 76 14 84 1.81e-15 73.6
MS.gene80137.t1 AT3G61120 51.471 68 33 0 9 76 2 69 1.94e-15 73.6
MS.gene80137.t1 AT3G58780 47.887 71 37 0 6 76 20 90 2.01e-15 73.6
MS.gene80137.t1 AT5G23260 48.000 75 37 1 5 77 14 88 3.43e-15 73.2
MS.gene80137.t1 AT5G23260 48.000 75 37 1 5 77 14 88 3.64e-15 73.2
MS.gene80137.t1 AT4G11880 52.941 68 31 1 10 76 3 70 3.69e-15 71.6
MS.gene80137.t1 AT4G11880 52.941 68 31 1 10 76 3 70 3.69e-15 71.6
MS.gene80137.t1 AT1G17310 32.995 197 88 6 8 198 47 205 4.20e-15 72.0
MS.gene80137.t1 AT1G17310 32.995 197 88 6 8 198 58 216 4.34e-15 72.4
MS.gene80137.t1 AT3G58780 47.887 71 37 0 6 76 14 84 5.30e-15 72.8
MS.gene80137.t1 AT4G11880 52.941 68 31 1 10 76 3 70 5.89e-15 71.6
MS.gene80137.t1 AT4G11880 52.941 68 31 1 10 76 3 70 5.89e-15 71.6
MS.gene80137.t1 AT3G30260 46.377 69 36 1 9 76 2 70 6.87e-15 72.0
MS.gene80137.t1 AT5G23260 49.296 71 34 1 9 77 2 72 8.99e-15 72.0
MS.gene80137.t1 AT5G23260 49.296 71 34 1 9 77 2 72 9.48e-15 71.6
MS.gene80137.t1 AT5G65070 33.000 200 115 8 9 196 2 194 1.08e-14 71.2
MS.gene80137.t1 AT2G14210 47.826 69 35 1 9 76 2 70 1.19e-14 71.2
MS.gene80137.t1 AT1G77950 46.479 71 37 1 9 78 2 72 1.32e-14 71.2
MS.gene80137.t1 AT1G77950 46.479 71 37 1 9 78 2 72 1.32e-14 71.2
MS.gene80137.t1 AT1G77950 46.479 71 37 1 9 78 2 72 1.32e-14 71.2
MS.gene80137.t1 AT1G77950 46.479 71 37 1 9 78 2 72 1.32e-14 71.2
MS.gene80137.t1 AT2G14210 47.826 69 35 1 9 76 2 70 1.37e-14 70.9
MS.gene80137.t1 AT2G22540 32.143 168 79 6 9 169 2 141 1.71e-14 70.9
MS.gene80137.t1 AT1G77980 47.887 71 36 1 9 78 2 72 1.80e-14 72.0
MS.gene80137.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.67e-14 69.3
MS.gene80137.t1 AT5G65070 33.533 167 77 6 9 171 2 138 2.95e-14 68.2
MS.gene80137.t1 AT5G65070 43.750 80 41 2 9 87 2 78 3.89e-14 69.3
MS.gene80137.t1 AT1G22130 42.697 89 48 2 9 96 2 88 5.49e-14 70.5
MS.gene80137.t1 AT5G65050 46.377 69 36 1 9 76 2 70 5.68e-14 68.6
MS.gene80137.t1 AT5G65050 46.377 69 36 1 9 76 2 70 5.76e-14 68.2
MS.gene80137.t1 AT5G65050 46.377 69 36 1 9 76 2 70 6.54e-14 68.2
MS.gene80137.t1 AT5G15800 49.275 69 34 1 9 76 2 70 7.09e-14 69.3
MS.gene80137.t1 AT5G60910 46.377 69 36 1 9 76 2 70 7.51e-14 68.9
MS.gene80137.t1 AT1G26310 46.377 69 36 1 9 76 2 70 8.46e-14 69.3
MS.gene80137.t1 AT5G15800 49.275 69 34 1 9 76 2 70 1.17e-13 68.9
MS.gene80137.t1 AT5G20240 45.714 70 36 1 9 76 2 71 1.74e-13 66.2
MS.gene80137.t1 AT1G47760 41.791 67 39 0 9 75 2 68 1.83e-13 67.0
MS.gene80137.t1 AT5G20240 45.714 70 36 1 9 76 2 71 2.04e-13 67.4
MS.gene80137.t1 AT5G65060 46.377 69 36 1 9 76 2 70 2.30e-13 67.0
MS.gene80137.t1 AT5G65060 46.377 69 36 1 9 76 2 70 2.38e-13 66.6
MS.gene80137.t1 AT1G69120 43.478 69 38 1 9 76 2 70 2.43e-13 67.4
MS.gene80137.t1 AT5G65060 46.377 69 36 1 9 76 2 70 2.70e-13 66.6
MS.gene80137.t1 AT1G69120 43.478 69 38 1 9 76 2 70 4.53e-13 67.0
MS.gene80137.t1 AT4G37435 39.773 88 48 2 9 91 2 89 5.68e-13 65.9
MS.gene80137.t1 AT3G58780 49.180 61 31 0 6 66 14 74 6.31e-13 66.6
MS.gene80137.t1 AT1G28450 41.892 74 43 0 5 78 4 77 7.04e-13 65.5
MS.gene80137.t1 AT3G58780 49.180 61 31 0 6 66 14 74 9.69e-13 66.2
MS.gene80137.t1 AT5G65070 50.877 57 28 0 9 65 2 58 1.13e-12 65.9
MS.gene80137.t1 AT2G03710 51.786 56 27 0 9 64 2 57 1.30e-12 64.7
MS.gene80137.t1 AT1G24260 46.377 69 36 1 9 76 2 70 1.37e-12 65.5
MS.gene80137.t1 AT1G24260 46.377 69 36 1 9 76 2 70 1.43e-12 65.9
MS.gene80137.t1 AT1G24260 46.377 69 36 1 9 76 2 70 1.47e-12 65.5
MS.gene80137.t1 AT3G02310 44.928 69 37 1 9 76 2 70 1.48e-12 64.7
MS.gene80137.t1 AT1G71692 44.286 70 38 1 9 77 2 71 1.66e-12 64.7
MS.gene80137.t1 AT3G02310 44.928 69 37 1 9 76 2 70 2.53e-12 65.1
MS.gene80137.t1 AT2G03710 51.786 56 27 0 9 64 2 57 2.59e-12 65.1
MS.gene80137.t1 AT2G03710 51.786 56 27 0 9 64 2 57 2.59e-12 65.1
MS.gene80137.t1 AT5G65080 41.772 79 42 2 9 86 9 84 8.83e-12 62.4
MS.gene80137.t1 AT5G65080 50.000 54 27 0 9 62 9 62 1.94e-11 61.6
MS.gene80137.t1 AT5G49420 39.744 78 43 1 5 78 3 80 4.63e-11 62.0
MS.gene80137.t1 AT5G49490 35.238 105 61 3 5 103 41 144 6.16e-11 61.2

Find 55 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATGACTATTTCAACATT+TGG 0.272727 5.1:-42274193 None:intergenic
TTTGTTTGGCTTCAACAATA+TGG 0.287971 5.1:+42274648 MS.gene80137:CDS
AGAAGAATCAAGCTCAGTTT+TGG 0.347534 5.1:+42274377 MS.gene80137:CDS
CTATGACTATTTCAACATTT+GGG 0.358955 5.1:-42274192 None:intergenic
ATTGAATCTTCTTGAGGATC+TGG 0.388433 5.1:-42274583 None:intergenic
TGGTGGAATTGTCCTATTGA+TGG 0.405545 5.1:+42274397 MS.gene80137:CDS
ATGTTGCAACCACATTTGTT+TGG 0.408052 5.1:+42274634 MS.gene80137:CDS
ATGACATCATGAAAATCATT+CGG 0.408528 5.1:+42274248 MS.gene80137:CDS
TTGTTTGGCTTCAACAATAT+GGG 0.410403 5.1:+42274649 MS.gene80137:CDS
AGTGAGCTTTGCACTCTTTG+TGG 0.435768 5.1:+42274112 MS.gene80137:CDS
GCTTCGAGAAAGTCACTTGT+AGG 0.449108 5.1:-42274063 None:intergenic
TCCTATTGATGGGATGGATA+TGG 0.452820 5.1:+42274408 MS.gene80137:CDS
TGACATCATGAAAATCATTC+GGG 0.467021 5.1:+42274249 MS.gene80137:CDS
TGAATCATTCAAGAAGGCTC+TGG 0.478190 5.1:+42274438 MS.gene80137:CDS
AACAAATGTGGTTGCAACAT+AGG 0.478237 5.1:-42274631 None:intergenic
CCTTCTTGAATGATTCAAGT+TGG 0.496013 5.1:-42274432 None:intergenic
GGGTTCTGAAGAAATTCTGC+TGG 0.496408 5.1:-42274610 None:intergenic
AATCTTCTTGAGGATCTGGC+TGG 0.497439 5.1:-42274579 None:intergenic
ACCATATCCATCCCATCAAT+AGG 0.499417 5.1:-42274409 None:intergenic
TATCTTCTCACCTAGTGAAA+AGG 0.506975 5.1:+42274153 MS.gene80137:CDS
GGTGGAATTGTCCTATTGAT+GGG 0.509530 5.1:+42274398 MS.gene80137:CDS
TGTTGCGCAACATGCTGATA+AGG 0.512704 5.1:+42274477 MS.gene80137:CDS
ACAAATGTGGTTGCAACATA+GGG 0.521813 5.1:-42274630 None:intergenic
CAAGGTGGACATGGTCCCCA+TGG 0.523876 5.1:+42274676 MS.gene80137:CDS
GCTGGCTCAGTTCATTCCCA+CGG 0.531199 5.1:-42274348 None:intergenic
TGATGTATTGACTCATATCA+AGG 0.531389 5.1:+42274303 MS.gene80137:CDS
GGAAAGATTGAATCTTCTTG+AGG 0.536124 5.1:-42274589 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 5.1:+42274074 MS.gene80137:CDS
ATGGGAGGACAAGGTGGACA+TGG 0.555996 5.1:+42274667 MS.gene80137:CDS
GCTCGGACACAATGGTGTTA+CGG 0.556895 5.1:-42274276 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 5.1:+42274073 MS.gene80137:CDS
GAATTGTCCTATTGATGGGA+TGG 0.578595 5.1:+42274402 MS.gene80137:CDS
TGGGAATGAACTGAGCCAGC+CGG 0.588710 5.1:+42274351 MS.gene80137:CDS
AGTCAATACATCATTGAGCT+CGG 0.593521 5.1:-42274293 None:intergenic
AACAATATGGGAGGACAAGG+TGG 0.597364 5.1:+42274661 MS.gene80137:CDS
TATCAAGGATGAACTAGACA+TGG 0.602596 5.1:+42274318 MS.gene80137:CDS
CCAACTTGAATCATTCAAGA+AGG 0.607259 5.1:+42274432 MS.gene80137:CDS
TTCAACAATATGGGAGGACA+AGG 0.607830 5.1:+42274658 MS.gene80137:CDS
ATCATTCAAGAAGGCTCTGG+AGG 0.608190 5.1:+42274441 MS.gene80137:CDS
GATTAGATCAAGAAATCCCA+TGG 0.608568 5.1:-42274693 None:intergenic
GCTGATAAGGTTGAAATGCA+AGG 0.616187 5.1:+42274490 MS.gene80137:CDS
TTTGGCTTCAACAATATGGG+AGG 0.620361 5.1:+42274652 MS.gene80137:CDS
ATCATTGAGCTCGGACACAA+TGG 0.621229 5.1:-42274284 None:intergenic
AAGGTGGACATGGTCCCCAT+GGG 0.621524 5.1:+42274677 MS.gene80137:CDS
GGATCTGGCTGGTTCTCAAG+AGG 0.622631 5.1:-42274568 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.627906 5.1:-42274087 None:intergenic
GCGGAAAGAAAACTCGAGGT+CGG 0.635901 5.1:+42274002 MS.gene80137:CDS
ATTAGATCAAGAAATCCCAT+GGG 0.651611 5.1:-42274692 None:intergenic
CATAGATCGTTATCTCTCTG+AGG 0.659651 5.1:+42274210 MS.gene80137:CDS
TAGACATGGAAAAGAACCGT+GGG 0.671283 5.1:+42274332 MS.gene80137:CDS
TCGAGCGGAAAGAAAACTCG+AGG 0.680063 5.1:+42273998 MS.gene80137:CDS
TTGTTGAAGCCAAACAAATG+TGG 0.689285 5.1:-42274643 None:intergenic
TGTGCTTCAGCCATGTCGAG+CGG 0.709182 5.1:+42273983 None:intergenic
CTAGACATGGAAAAGAACCG+TGG 0.718724 5.1:+42274331 MS.gene80137:CDS
TTAGATCAAGAAATCCCATG+GGG 0.786091 5.1:-42274691 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATGACATCATGAAAATCATT+CGG + chr5.1:42274248-42274267 MS.gene80137:CDS 25.0%
! ATTTCCTTCAAAAACTTGAA+GGG - chr5.1:42274530-42274549 None:intergenic 25.0%
! CTATGACTATTTCAACATTT+GGG - chr5.1:42274195-42274214 None:intergenic 25.0%
! TCTATGACTATTTCAACATT+TGG - chr5.1:42274196-42274215 None:intergenic 25.0%
!! AATGAAAATACCTTTTCACT+AGG - chr5.1:42274166-42274185 None:intergenic 25.0%
!! TTTCATGATGTCATCATTTT+GGG - chr5.1:42274242-42274261 None:intergenic 25.0%
!! TTTTCATGATGTCATCATTT+TGG - chr5.1:42274243-42274262 None:intergenic 25.0%
!!! AGTGAAAAGGTATTTTCATT+TGG + chr5.1:42274166-42274185 MS.gene80137:CDS 25.0%
CATTTCCTTCAAAAACTTGA+AGG - chr5.1:42274531-42274550 None:intergenic 30.0%
TGACATCATGAAAATCATTC+GGG + chr5.1:42274249-42274268 MS.gene80137:CDS 30.0%
TTTCCTTCAAAAACTTGAAG+GGG - chr5.1:42274529-42274548 None:intergenic 30.0%
! TTCATGATGTCATCATTTTG+GGG - chr5.1:42274241-42274260 None:intergenic 30.0%
! TTGTTTGGCTTCAACAATAT+GGG + chr5.1:42274649-42274668 MS.gene80137:CDS 30.0%
! TTTGTTTGGCTTCAACAATA+TGG + chr5.1:42274648-42274667 MS.gene80137:CDS 30.0%
!! CTTCAAGTTTTTGAAGGAAA+TGG + chr5.1:42274529-42274548 MS.gene80137:CDS 30.0%
!! TGATGTATTGACTCATATCA+AGG + chr5.1:42274303-42274322 MS.gene80137:CDS 30.0%
AACAAATGTGGTTGCAACAT+AGG - chr5.1:42274634-42274653 None:intergenic 35.0%
ACAAATGTGGTTGCAACATA+GGG - chr5.1:42274633-42274652 None:intergenic 35.0%
AGTCAATACATCATTGAGCT+CGG - chr5.1:42274296-42274315 None:intergenic 35.0%
ATGTTGCAACCACATTTGTT+TGG + chr5.1:42274634-42274653 MS.gene80137:CDS 35.0%
ATTGAATCTTCTTGAGGATC+TGG - chr5.1:42274586-42274605 None:intergenic 35.0%
CCAACTTGAATCATTCAAGA+AGG + chr5.1:42274432-42274451 MS.gene80137:CDS 35.0%
CCTTCTTGAATGATTCAAGT+TGG - chr5.1:42274435-42274454 None:intergenic 35.0%
GGAAAGATTGAATCTTCTTG+AGG - chr5.1:42274592-42274611 None:intergenic 35.0%
TATCAAGGATGAACTAGACA+TGG + chr5.1:42274318-42274337 MS.gene80137:CDS 35.0%
TATCTTCTCACCTAGTGAAA+AGG + chr5.1:42274153-42274172 MS.gene80137:CDS 35.0%
TTCAAAAACTTGAAGGGGTT+GGG - chr5.1:42274524-42274543 None:intergenic 35.0%
TTGTTGAAGCCAAACAAATG+TGG - chr5.1:42274646-42274665 None:intergenic 35.0%
! AGAAGAATCAAGCTCAGTTT+TGG + chr5.1:42274377-42274396 MS.gene80137:CDS 35.0%
! TGAGCTTGATTCTTCTTTTC+CGG - chr5.1:42274373-42274392 None:intergenic 35.0%
ACCATATCCATCCCATCAAT+AGG - chr5.1:42274412-42274431 None:intergenic 40.0%
CATAGATCGTTATCTCTCTG+AGG + chr5.1:42274210-42274229 MS.gene80137:CDS 40.0%
CTTCAAAAACTTGAAGGGGT+TGG - chr5.1:42274525-42274544 None:intergenic 40.0%
GAATTGTCCTATTGATGGGA+TGG + chr5.1:42274402-42274421 MS.gene80137:CDS 40.0%
GCTGATAAGGTTGAAATGCA+AGG + chr5.1:42274490-42274509 MS.gene80137:CDS 40.0%
GGTGGAATTGTCCTATTGAT+GGG + chr5.1:42274398-42274417 MS.gene80137:CDS 40.0%
TAGACATGGAAAAGAACCGT+GGG + chr5.1:42274332-42274351 MS.gene80137:CDS 40.0%
TCCTATTGATGGGATGGATA+TGG + chr5.1:42274408-42274427 MS.gene80137:CDS 40.0%
TGAATCATTCAAGAAGGCTC+TGG + chr5.1:42274438-42274457 MS.gene80137:CDS 40.0%
TGGTGGAATTGTCCTATTGA+TGG + chr5.1:42274397-42274416 MS.gene80137:CDS 40.0%
TTCAACAATATGGGAGGACA+AGG + chr5.1:42274658-42274677 MS.gene80137:CDS 40.0%
! TTTGGCTTCAACAATATGGG+AGG + chr5.1:42274652-42274671 MS.gene80137:CDS 40.0%
!! AGAATCAAGCTCAGTTTTGG+TGG + chr5.1:42274380-42274399 MS.gene80137:CDS 40.0%
!! CAACCCCTTCAAGTTTTTGA+AGG + chr5.1:42274523-42274542 MS.gene80137:CDS 40.0%
!!! TGATGTCATCATTTTGGGGT+AGG - chr5.1:42274237-42274256 None:intergenic 40.0%
AACAATATGGGAGGACAAGG+TGG + chr5.1:42274661-42274680 MS.gene80137:CDS 45.0%
AATCTTCTTGAGGATCTGGC+TGG - chr5.1:42274582-42274601 None:intergenic 45.0%
AGTGAGCTTTGCACTCTTTG+TGG + chr5.1:42274112-42274131 MS.gene80137:CDS 45.0%
ATCATTGAGCTCGGACACAA+TGG - chr5.1:42274287-42274306 None:intergenic 45.0%
CTAGACATGGAAAAGAACCG+TGG + chr5.1:42274331-42274350 MS.gene80137:CDS 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr5.1:42274090-42274109 None:intergenic 45.0%
GCTTCGAGAAAGTCACTTGT+AGG - chr5.1:42274066-42274085 None:intergenic 45.0%
TGTTGCGCAACATGCTGATA+AGG + chr5.1:42274477-42274496 MS.gene80137:CDS 45.0%
! ATCATTCAAGAAGGCTCTGG+AGG + chr5.1:42274441-42274460 MS.gene80137:CDS 45.0%
! CTTGATTCTTCTTTTCCGGC+TGG - chr5.1:42274369-42274388 None:intergenic 45.0%
!! GGGTTCTGAAGAAATTCTGC+TGG - chr5.1:42274613-42274632 None:intergenic 45.0%
GCGGAAAGAAAACTCGAGGT+CGG + chr5.1:42274002-42274021 MS.gene80137:CDS 50.0%
TCGAGCGGAAAGAAAACTCG+AGG + chr5.1:42273998-42274017 MS.gene80137:CDS 50.0%
! GCTCGGACACAATGGTGTTA+CGG - chr5.1:42274279-42274298 None:intergenic 50.0%
AAGGTGGACATGGTCCCCAT+GGG + chr5.1:42274677-42274696 MS.gene80137:CDS 55.0%
ATGGGAGGACAAGGTGGACA+TGG + chr5.1:42274667-42274686 MS.gene80137:CDS 55.0%
TGGGAATGAACTGAGCCAGC+CGG + chr5.1:42274351-42274370 MS.gene80137:CDS 55.0%
! GCTGGCTCAGTTCATTCCCA+CGG - chr5.1:42274351-42274370 None:intergenic 55.0%
! GGATCTGGCTGGTTCTCAAG+AGG - chr5.1:42274571-42274590 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr5.1:42274073-42274092 MS.gene80137:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr5.1:42274074-42274093 MS.gene80137:CDS 55.0%
CAAGGTGGACATGGTCCCCA+TGG + chr5.1:42274676-42274695 MS.gene80137:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 42273995 42274708 42273995 ID=MS.gene80137
chr5.1 mRNA 42273995 42274708 42273995 ID=MS.gene80137.t1;Parent=MS.gene80137
chr5.1 exon 42273995 42274708 42273995 ID=MS.gene80137.t1.exon1;Parent=MS.gene80137.t1
chr5.1 CDS 42273995 42274708 42273995 ID=cds.MS.gene80137.t1;Parent=MS.gene80137.t1
Gene Sequence

>MS.gene80137

ATGTCGAGCGGAAAGAAAACTCGAGGTCGGCAAAAGATTGAGATGAAAAAGATGAGCGATGAAAGCAGCCTACAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACTCTTTGTGGTGCATATGTTGCTCTAATTATCTTCTCACCTAGTGAAAAGGTATTTTCATTTGGTCACCCAAATGTTGAAATAGTCATAGATCGTTATCTCTCTGAGGTCCTACCCCAAAATGATGACATCATGAAAATCATTCGGGATGACCGTAACACCATTGTGTCCGAGCTCAATGATGTATTGACTCATATCAAGGATGAACTAGACATGGAAAAGAACCGTGGGAATGAACTGAGCCAGCCGGAAAAGAAGAATCAAGCTCAGTTTTGGTGGAATTGTCCTATTGATGGGATGGATATGGTCCAACTTGAATCATTCAAGAAGGCTCTGGAGGATCTTAAGAAACTTGTTGCGCAACATGCTGATAAGGTTGAAATGCAAGGTACTTCTACCCAACCCCTTCAAGTTTTTGAAGGAAATGGTTCATCATCTAACATGCCTCTTGAGAACCAGCCAGATCCTCAAGAAGATTCAATCTTTCCAGCAGAATTTCTTCAGAACCCTATGTTGCAACCACATTTGTTTGGCTTCAACAATATGGGAGGACAAGGTGGACATGGTCCCCATGGGATTTCTTGA
Protein sequence

>MS.gene80137.t1

MSSGKKTRGRQKIEMKKMSDESSLQVTFSKRRSGLFKKASELCTLCGAYVALIIFSPSEKVFSFGHPNVEIVIDRYLSEVLPQNDDIMKIIRDDRNTIVSELNDVLTHIKDELDMEKNRGNELSQPEKKNQAQFWWNCPIDGMDMVQLESFKKALEDLKKLVAQHADKVEMQGTSTQPLQVFEGNGSSSNMPLENQPDPQEDSIFPAEFLQNPMLQPHLFGFNNMGGQGGHGPHGIS