AlfalfaGEDB | MS.gene80256

M. sativa cultivar XinJiangDaYe / MS.gene80256

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004144 GO:0006629 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046486 GO:0071704 GO:1901576
PFAM: PF03007.19 PF06974.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80256.t1	XP_013443285.1	92.6	407	14	1	1	391	65	471	3.10E-211	744.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80256.t1	Q93ZR6	25.5	408	274	6	4	388	72	472	4.6e-30	133.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80256.t1	A0A072TUT6	92.6	407	14	1	1	391	65	471	2.2e-211	744.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene059124	MS.gene80256	0.805179	1.51E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80256.t1	MTR_0024s0170	92.629	407	14	1	1	391	65	471	0.0	769
MS.gene80256.t1	MTR_0024s0190	77.094	406	75	4	3	391	2	406	0.0	637
MS.gene80256.t1	MTR_7g009960	53.086	405	173	3	1	390	64	466	5.21e-158	453
MS.gene80256.t1	MTR_4g078417	56.154	390	155	3	1	376	62	449	6.96e-153	440
MS.gene80256.t1	MTR_4g078440	53.941	406	171	3	1	392	38	441	1.53e-152	439
MS.gene80256.t1	MTR_4g078480	53.149	397	170	3	1	383	61	455	3.77e-151	436
MS.gene80256.t1	MTR_4g078413	51.870	401	177	3	1	387	62	460	1.97e-146	424
MS.gene80256.t1	MTR_4g078390	52.195	410	171	6	1	392	63	465	3.64e-142	413
MS.gene80256.t1	MTR_4g078390	52.736	402	165	6	9	392	2	396	4.12e-141	407
MS.gene80256.t1	MTR_4g478280	50.248	404	183	3	1	387	63	465	1.95e-138	403

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80256.t1	AT3G49190	27.594	424	269	10	1	389	70	490	5.67e-44	160
MS.gene80256.t1	AT3G49200	28.537	417	251	10	7	383	87	496	3.89e-43	157
MS.gene80256.t1	AT5G22490	27.317	410	259	9	3	380	63	465	2.12e-41	152
MS.gene80256.t1	AT5G53390	27.670	412	266	11	4	387	69	476	3.15e-40	149
MS.gene80256.t1	AT3G49210	25.882	425	269	8	8	389	90	511	1.16e-38	145
MS.gene80256.t1	AT5G12420	27.818	417	258	12	1	380	57	467	1.90e-38	144
MS.gene80256.t1	AT2G38995	27.518	407	267	9	4	387	7	408	1.24e-37	140
MS.gene80256.t1	AT2G38995	27.518	407	267	9	4	387	76	477	4.37e-37	140
MS.gene80256.t1	AT5G16350	27.136	398	261	10	4	380	60	449	1.03e-36	139
MS.gene80256.t1	AT5G16350	26.506	415	262	11	4	380	60	469	4.51e-35	135

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Find 0 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGTGAAATCAAGACT+TGG	+	43355:2504-2523	MS.gene80256:CDS	30.0%
AAGATGATGTAACACCAATT+AGG	+	43355:2412-2431	MS.gene80256:CDS	30.0%
ACCAAAATGGAGAGAAAAAA+TGG	+	43355:1962-1981	MS.gene80256:CDS	30.0%
ATCATTTACATACTTACCTC+TGG	-	43355:4167-4186	None:intergenic	30.0%
ATGATATGAATTTCCCAAAG+CGG	-	43355:2120-2139	None:intergenic	30.0%
ATTCAATAAAACCAATGCTG+TGG	-	43355:2966-2985	None:intergenic	30.0%
CTACAGTAGACATGAAATAA+TGG	-	43355:3265-3284	None:intergenic	30.0%
GCAAAAATTCATTTCATGCA+TGG	+	43355:4851-4870	MS.gene80256:CDS	30.0%
GCTTCCCATATAAATTCAAT+TGG	-	43355:3126-3145	None:intergenic	30.0%
GGAAATGATCTCTTGAAAAA+TGG	-	43355:2321-2340	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
43355	gene	1955	4923	1955	ID=MS.gene80256
43355	mRNA	1955	4923	1955	ID=MS.gene80256.t1;Parent=MS.gene80256
43355	exon	1955	2530	1955	ID=MS.gene80256.t1.exon1;Parent=MS.gene80256.t1
43355	CDS	1955	2530	1955	ID=cds.MS.gene80256.t1;Parent=MS.gene80256.t1
43355	exon	2875	3008	2875	ID=MS.gene80256.t1.exon2;Parent=MS.gene80256.t1
43355	CDS	2875	3008	2875	ID=cds.MS.gene80256.t1;Parent=MS.gene80256.t1
43355	exon	3056	3236	3056	ID=MS.gene80256.t1.exon3;Parent=MS.gene80256.t1
43355	CDS	3056	3236	3056	ID=cds.MS.gene80256.t1;Parent=MS.gene80256.t1
43355	exon	4032	4169	4032	ID=MS.gene80256.t1.exon4;Parent=MS.gene80256.t1
43355	CDS	4032	4169	4032	ID=cds.MS.gene80256.t1;Parent=MS.gene80256.t1
43355	exon	4774	4923	4774	ID=MS.gene80256.t1.exon5;Parent=MS.gene80256.t1
43355	CDS	4774	4923	4774	ID=cds.MS.gene80256.t1;Parent=MS.gene80256.t1

Gene Sequence

>MS.gene80256

ATTAAGGACCAAAATGGAGAGAAAAAATGGAAGAAAGTTGATGTCAAAGTAGAGGAACATGTATACATTCCTATGTTTCCCACTAGCAAATCATCACTCTATGATGAATATCTTGATGATTATATGTCAAAAATAGCAATGGAACATTTACCACAAGATAGACCGCTTTGGGAAATTCATATCATTAAATATCCAACAAAAAATGCAGCTGGTACCTTAGTATTCAAACTTCATCATGCACTTGGAGATGGTTACTCTCTAATGGGAGCTCTTCTTTCATGTTTAGAAAGAGCTGATAACCCTTCTCTTCCATTCACATTACCATCAAGTAAAATTAGACCTAATTCAATTTTCAATACTAAACCATTTTTCAAGAGATCATTTCCCTCAATTTTTTCCAAAGTATTTGACACTATATCTGATTTTGGATGGAGTATGTTAAAAAGTAATTTGGTTGAAGATGATGTAACACCAATTAGGTCTTGTGAGGATGATATCAAGCTAAGGAAAATTAATATCTCAAGTGTCTCATTCTCTATGGATCGCATCAAAGAAGTGAAATCAAGACTTGGAGTGGTATGTGAAATATCTCTAATTAAATTAAATATTATTACAAGAGTTTAATTATTTGGCATGCACTACCAATATAGTCGATATTTGTGAAAATATTTTAGAAACTGACGTAGCAAAGTATCATATTTTTTGAAAAACTCGATATCTGGTCCAATGAAACAAAATATCATATTACGACACAATTGCAATTGTAGTGATTTCAATTGTATGTGTGCAATTTTCTATATTAACAAAGATAGTGACATAAGTTACAACTATGAATACAATTTAAACCTTGTATTAATCTTAATTACTTTTTTATTAGTAGCTTAAATGTTGATTTTTTTTCATCATCAAATTAATTGCAGAGCACAAATGATGTGATAGCTGGCTTAATTTTCTTTGGAATTCGGTTATACATGCACCAAATGAATCAAGATTCAAGCAAATATCAATCCACAGCATTGGTTTTATTGAATACAAGAAACATTGGAGGTTATAAGTCACTTAAGGAGATGGTTGACAATAAAAACAATGATAATGGTTCAGCTTGGGAAATCAATTTGCATTTTTGCATGTTTCAATTCCAAAGCTAAGTGACAAAAAATTTGATAATCCAATTGAATTTATATGGGAAGCTCATAAAGAAATCAATAGGAAGAAAAATTCTTTGGCCACACCTCTAACTGGTATGATCTTAAATATGGTGAAGAAATTAAGAGGCCCCGAGGTAGGTAGCTATGCTTAGTTATAAGCCATTATTTCATGTCTACTGTAGTACAAATTAATCATGTTGGTATCATTAAATATTTGATCAATACTTAGTTCCTTTTTTGTCCTTTTAAAACAACTTTTTTTTGACCAAAAAAAATTTTGTACAAACAATATATTCCATTCACACACAAAAAAAAAATCAATATTCTTATCAACCATTTTTTCTCAATAATATTCTCTATTAATATATTTATGTCACCACTCCCGGATCAATATTTTTCACTTTACATTTATAATAGTGGTGGATACATCAATATTTATCCCGATGGTGTCAATCTAGTTCGGATCATCCTCTTCCTTTTCTATGGCTCGACAATTCTAAGTCGGTCTTATAATAAAATATAAACATCAATGTTTGCTAAAATAAATTTGGTAACAAAATTATCCTTTTACTTTTATTTATAGTTTCTCTTCAATTTGAGTGAAATAAAGAGAAAGACAGTAGTAACTTTTTTTAGTAGACTTTCATCATCTGTTAAAGAAATTTATAAAAAAAATAAAAAAATAAAAAAAAACATCATGACACAATTTTGGGCATGTAAAGGTCTAATTTTATCACTGGTTTAAGAATTGTATATTTTTATACATCTAAAACTATAATATCGGATTTAAACATTTCTTCTAATTGATGGAGACAATCCCTACTTAGCTTTTATATAAAAGAATTTGAATCATAAATTCCTTCTCTGTTTTTTTTTTTTATAGAACTTTACTTTATTTTAATTGGAATATTTTTAATACTGATTTTTAGGCATCAGCCAAATTTGTATACAACACTTTGAGAAATTCAAGCACAACAATTTCCAACATAATTGGACCAGTGGAGCAAATGGCTTTGGCTAATCATCCTGTTAAAGGACTATATTTTATGGTTGTTGGTCCACCAGAGGTAAGTATGTAAATGATTAAATCATAATTGAATGTATATACTTTATGGAAATAGGTAGATATCCATCATTTTCACCATGCTGGTGAAAGATGCTTCTGATCCATTACATAGATTATTAATTATTTCACATGTGCTTTCAATTAATGTTAAAGAGAATATGTTCTAAGTACATATTCAAGAAAGAAAAAGAACAACAAAACTCAGTTTTTTAAATTTATTTATAATATACCATATTAATAATATTCTTTTCTATTAAAGACTTTTTTTGAATAATAAATTTTGCTAATATTAGCAACAACAAAAATTATATATTGTTTGGTTTTTTCTCCAATGGTGGTGGCCTTTTTGGATACCACTTGAGCCCACCAAATTTAACTCAAAGTATGACCACCTTTTTCTAAATAATACTGTAGTTGTAAATATAGTAGTAAATTTATTAGGAAAGGAGAAACTTATAAAGACATAGTATATTTTTTTTAATAAAAGAGTTAAAGAAGAACAAATAAATAACTATTTAGACTATATTTTTTATTCCAATAAATAATAGCATGGAATTTTTACTATCATGATTTTTGTATGATATTATTTTTTGTTGGACCTGCAGAGTCTAACCATAACCATCATGAGCTACATGGGAAAATTAAGAATTGCATTTGGATTGGAGAAAGACTTTATTGACAAGCAAAAATTCATTTCATGCATGGAGAGTTCTCTTGATATGATAATTACAGCAGCAAGAAAGATTTCCAAATAA

Protein sequence

>MS.gene80256.t1

IKDQNGEKKWKKVDVKVEEHVYIPMFPTSKSSLYDEYLDDYMSKIAMEHLPQDRPLWEIHIIKYPTKNAAGTLVFKLHHALGDGYSLMGALLSCLERADNPSLPFTLPSSKIRPNSIFNTKPFFKRSFPSIFSKVFDTISDFGWSMLKSNLVEDDVTPIRSCEDDIKLRKINISSVSFSMDRIKEVKSRLGVSTNDVIAGLIFFGIRLYMHQMNQDSSKYQSTALVLLNTRNIGGYNLGNQFAFLHVSIPKLSDKKFDNPIEFIWEAHKEINRKKNSLATPLTGMILNMVKKLRGPEASAKFVYNTLRNSSTTISNIIGPVEQMALANHPVKGLYFMVVGPPESLTITIMSYMGKLRIAFGLEKDFIDKQKFISCMESSLDMIITAARKISK