Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80256.t1 | XP_013443285.1 | 92.6 | 407 | 14 | 1 | 1 | 391 | 65 | 471 | 3.10E-211 | 744.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80256.t1 | Q93ZR6 | 25.5 | 408 | 274 | 6 | 4 | 388 | 72 | 472 | 4.6e-30 | 133.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80256.t1 | A0A072TUT6 | 92.6 | 407 | 14 | 1 | 1 | 391 | 65 | 471 | 2.2e-211 | 744.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059124 | MS.gene80256 | 0.805179 | 1.51E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80256.t1 | MTR_0024s0170 | 92.629 | 407 | 14 | 1 | 1 | 391 | 65 | 471 | 0.0 | 769 |
| MS.gene80256.t1 | MTR_0024s0190 | 77.094 | 406 | 75 | 4 | 3 | 391 | 2 | 406 | 0.0 | 637 |
| MS.gene80256.t1 | MTR_7g009960 | 53.086 | 405 | 173 | 3 | 1 | 390 | 64 | 466 | 5.21e-158 | 453 |
| MS.gene80256.t1 | MTR_4g078417 | 56.154 | 390 | 155 | 3 | 1 | 376 | 62 | 449 | 6.96e-153 | 440 |
| MS.gene80256.t1 | MTR_4g078440 | 53.941 | 406 | 171 | 3 | 1 | 392 | 38 | 441 | 1.53e-152 | 439 |
| MS.gene80256.t1 | MTR_4g078480 | 53.149 | 397 | 170 | 3 | 1 | 383 | 61 | 455 | 3.77e-151 | 436 |
| MS.gene80256.t1 | MTR_4g078413 | 51.870 | 401 | 177 | 3 | 1 | 387 | 62 | 460 | 1.97e-146 | 424 |
| MS.gene80256.t1 | MTR_4g078390 | 52.195 | 410 | 171 | 6 | 1 | 392 | 63 | 465 | 3.64e-142 | 413 |
| MS.gene80256.t1 | MTR_4g078390 | 52.736 | 402 | 165 | 6 | 9 | 392 | 2 | 396 | 4.12e-141 | 407 |
| MS.gene80256.t1 | MTR_4g478280 | 50.248 | 404 | 183 | 3 | 1 | 387 | 63 | 465 | 1.95e-138 | 403 |
| MS.gene80256.t1 | MTR_4g478260 | 51.015 | 394 | 175 | 3 | 1 | 377 | 71 | 463 | 4.98e-138 | 402 |
| MS.gene80256.t1 | MTR_7g078060 | 50.000 | 398 | 181 | 4 | 1 | 383 | 63 | 457 | 8.76e-138 | 402 |
| MS.gene80256.t1 | MTR_4g478220 | 51.015 | 394 | 175 | 3 | 1 | 377 | 63 | 455 | 2.87e-137 | 400 |
| MS.gene80256.t1 | MTR_7g009960 | 52.514 | 358 | 153 | 3 | 1 | 343 | 64 | 419 | 7.31e-137 | 397 |
| MS.gene80256.t1 | MTR_7g078060 | 51.381 | 362 | 160 | 3 | 35 | 383 | 7 | 365 | 6.24e-131 | 381 |
| MS.gene80256.t1 | MTR_4g078600 | 47.922 | 409 | 195 | 3 | 1 | 392 | 63 | 470 | 1.65e-128 | 378 |
| MS.gene80256.t1 | MTR_4g078390 | 50.909 | 330 | 132 | 7 | 1 | 312 | 63 | 380 | 2.28e-102 | 308 |
| MS.gene80256.t1 | MTR_4g078390 | 51.553 | 322 | 126 | 7 | 9 | 312 | 2 | 311 | 7.11e-101 | 302 |
| MS.gene80256.t1 | MTR_4g078460 | 53.093 | 194 | 88 | 2 | 1 | 193 | 62 | 253 | 3.27e-63 | 217 |
| MS.gene80256.t1 | MTR_4g078460 | 53.093 | 194 | 88 | 2 | 1 | 193 | 62 | 253 | 1.12e-62 | 218 |
| MS.gene80256.t1 | MTR_1g008160 | 25.728 | 412 | 269 | 9 | 4 | 383 | 19 | 425 | 4.15e-37 | 140 |
| MS.gene80256.t1 | MTR_1g008160 | 25.728 | 412 | 269 | 9 | 4 | 383 | 63 | 469 | 6.81e-37 | 140 |
| MS.gene80256.t1 | MTR_1g008160 | 25.337 | 371 | 241 | 8 | 4 | 343 | 19 | 384 | 3.11e-32 | 125 |
| MS.gene80256.t1 | MTR_1g008160 | 25.068 | 367 | 240 | 7 | 7 | 343 | 67 | 428 | 5.39e-32 | 125 |
| MS.gene80256.t1 | MTR_2055s0010 | 55.556 | 90 | 40 | 0 | 298 | 387 | 1 | 90 | 3.04e-26 | 101 |
| MS.gene80256.t1 | MTR_1g008160 | 27.273 | 209 | 147 | 3 | 7 | 212 | 67 | 273 | 1.11e-22 | 97.8 |
| MS.gene80256.t1 | MTR_5g004770 | 28.033 | 239 | 154 | 5 | 159 | 380 | 148 | 385 | 1.42e-19 | 90.1 |
| MS.gene80256.t1 | MTR_5g004770 | 34.314 | 102 | 59 | 4 | 1 | 99 | 60 | 156 | 2.28e-12 | 68.6 |
| MS.gene80256.t1 | MTR_1g008160 | 25.194 | 258 | 161 | 6 | 154 | 383 | 62 | 315 | 5.46e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80256.t1 | AT3G49190 | 27.594 | 424 | 269 | 10 | 1 | 389 | 70 | 490 | 5.67e-44 | 160 |
| MS.gene80256.t1 | AT3G49200 | 28.537 | 417 | 251 | 10 | 7 | 383 | 87 | 496 | 3.89e-43 | 157 |
| MS.gene80256.t1 | AT5G22490 | 27.317 | 410 | 259 | 9 | 3 | 380 | 63 | 465 | 2.12e-41 | 152 |
| MS.gene80256.t1 | AT5G53390 | 27.670 | 412 | 266 | 11 | 4 | 387 | 69 | 476 | 3.15e-40 | 149 |
| MS.gene80256.t1 | AT3G49210 | 25.882 | 425 | 269 | 8 | 8 | 389 | 90 | 511 | 1.16e-38 | 145 |
| MS.gene80256.t1 | AT5G12420 | 27.818 | 417 | 258 | 12 | 1 | 380 | 57 | 467 | 1.90e-38 | 144 |
| MS.gene80256.t1 | AT2G38995 | 27.518 | 407 | 267 | 9 | 4 | 387 | 7 | 408 | 1.24e-37 | 140 |
| MS.gene80256.t1 | AT2G38995 | 27.518 | 407 | 267 | 9 | 4 | 387 | 76 | 477 | 4.37e-37 | 140 |
| MS.gene80256.t1 | AT5G16350 | 27.136 | 398 | 261 | 10 | 4 | 380 | 60 | 449 | 1.03e-36 | 139 |
| MS.gene80256.t1 | AT5G16350 | 26.506 | 415 | 262 | 11 | 4 | 380 | 60 | 469 | 4.51e-35 | 135 |
| MS.gene80256.t1 | AT5G53380 | 28.125 | 416 | 246 | 14 | 5 | 380 | 63 | 465 | 1.71e-34 | 133 |
| MS.gene80256.t1 | AT1G72110 | 26.570 | 414 | 266 | 13 | 3 | 389 | 69 | 471 | 1.04e-33 | 131 |
| MS.gene80256.t1 | AT5G12420 | 27.520 | 367 | 224 | 11 | 1 | 331 | 57 | 417 | 2.22e-33 | 130 |
| MS.gene80256.t1 | AT5G37300 | 25.061 | 407 | 277 | 5 | 4 | 388 | 90 | 490 | 4.11e-33 | 130 |
| MS.gene80256.t1 | AT5G37300 | 25.061 | 407 | 277 | 5 | 4 | 388 | 72 | 472 | 4.35e-33 | 129 |
| MS.gene80256.t1 | AT2G38995 | 27.348 | 362 | 236 | 8 | 4 | 343 | 7 | 363 | 1.63e-32 | 126 |
| MS.gene80256.t1 | AT1G72110 | 26.265 | 415 | 257 | 15 | 3 | 389 | 69 | 462 | 2.44e-29 | 119 |
| MS.gene80256.t1 | AT5G22490 | 27.097 | 310 | 187 | 9 | 3 | 280 | 63 | 365 | 7.76e-26 | 108 |
| MS.gene80256.t1 | AT5G37300 | 26.014 | 296 | 192 | 4 | 4 | 278 | 90 | 379 | 3.02e-23 | 100 |
| MS.gene80256.t1 | AT3G49210 | 24.709 | 344 | 214 | 7 | 8 | 309 | 90 | 430 | 1.59e-22 | 99.0 |
| MS.gene80256.t1 | AT5G37300 | 26.383 | 235 | 170 | 2 | 4 | 238 | 90 | 321 | 3.66e-22 | 97.1 |
| MS.gene80256.t1 | AT5G16350 | 25.225 | 333 | 207 | 10 | 4 | 299 | 60 | 387 | 1.29e-21 | 95.9 |
| MS.gene80256.t1 | AT2G38995 | 23.611 | 216 | 145 | 4 | 192 | 387 | 72 | 287 | 7.42e-11 | 63.2 |
Find 0 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTATAAATAAAAGTAAA+AGG | - | 43355:3669-3688 | None:intergenic | 10.0% |
| !! | AACAAAAATTATATATTGTT+TGG | + | 43355:4466-4485 | MS.gene80256:intron | 10.0% |
| !! | AATATAGTAGTAAATTTATT+AGG | + | 43355:4588-4607 | MS.gene80256:intron | 10.0% |
| !! | AGAAAAGAATATTATTAATA+TGG | - | 43355:4401-4420 | None:intergenic | 10.0% |
| !! | ATAATTAATAATCTATGTAA+TGG | - | 43355:4273-4292 | None:intergenic | 10.0% |
| !!! | TATTTTTAATACTGATTTTT+AGG | + | 43355:4010-4029 | MS.gene80256:intron | 10.0% |
| !! | AAGTAATTAAGATTAATACA+AGG | - | 43355:2803-2822 | None:intergenic | 15.0% |
| !! | AATTGAATGTATATACTTTA+TGG | + | 43355:4195-4214 | MS.gene80256:intron | 15.0% |
| !! | AGAATATTATTGAGAAAAAA+TGG | - | 43355:3439-3458 | None:intergenic | 15.0% |
| !! | ATAAAAAAAAAAAACAGAGA+AGG | - | 43355:3964-3983 | None:intergenic | 15.0% |
| !! | ATAATCCAATTGAATTTATA+TGG | + | 43355:3118-3137 | MS.gene80256:CDS | 15.0% |
| !! | ATTACAAGAGTTTAATTATT+TGG | + | 43355:2564-2583 | MS.gene80256:intron | 15.0% |
| !! | TAATCCAATTGAATTTATAT+GGG | + | 43355:3119-3138 | MS.gene80256:CDS | 15.0% |
| !!! | AATATGATATTTTGTTTCAT+TGG | - | 43355:2681-2700 | None:intergenic | 15.0% |
| !!! | AATGTTTGCTAAAATAAATT+TGG | + | 43355:3631-3650 | MS.gene80256:intron | 15.0% |
| !!! | CAAAAAAAAGTTGTTTTAAA+AGG | - | 43355:3347-3366 | None:intergenic | 15.0% |
| !!! | GAACTTTACTTTATTTTAAT+TGG | + | 43355:3985-4004 | MS.gene80256:intron | 15.0% |
| !!! | TACATCTAAAACTATAATAT+CGG | + | 43355:3864-3883 | MS.gene80256:intron | 15.0% |
| !!! | TGTATGATATTATTTTTTGT+TGG | + | 43355:4743-4762 | MS.gene80256:intron | 15.0% |
| !!! | TGTTTGTACAAAATTTTTTT+TGG | - | 43355:3371-3390 | None:intergenic | 15.0% |
| !!! | TTAGTATTGAAAATTGAATT+AGG | - | 43355:2297-2316 | None:intergenic | 15.0% |
| !!! | TTTTATATAAAAGCTAAGTA+GGG | - | 43355:3923-3942 | None:intergenic | 15.0% |
| !! | AATTCCATGCTATTATTTAT+TGG | - | 43355:4706-4725 | None:intergenic | 20.0% |
| !! | AGTAGTAAATTTATTAGGAA+AGG | + | 43355:4593-4612 | MS.gene80256:intron | 20.0% |
| !! | ATAAAATATAGTCCTTTAAC+AGG | - | 43355:4131-4150 | None:intergenic | 20.0% |
| !! | CTACAGTATTATTTAGAAAA+AGG | - | 43355:4563-4582 | None:intergenic | 20.0% |
| !! | GACAATAAAAACAATGATAA+TGG | + | 43355:3028-3047 | MS.gene80256:intron | 20.0% |
| !! | GAGTATGTTAAAAAGTAATT+TGG | + | 43355:2386-2405 | MS.gene80256:CDS | 20.0% |
| !! | TAAACATTTCTTCTAATTGA+TGG | + | 43355:3890-3909 | MS.gene80256:intron | 20.0% |
| !! | TAAAGTGAAAAATATTGATC+CGG | - | 43355:3488-3507 | None:intergenic | 20.0% |
| !! | TATTCCAATAAATAATAGCA+TGG | + | 43355:4699-4718 | MS.gene80256:intron | 20.0% |
| !! | TCACTTTACATTTATAATAG+TGG | + | 43355:3500-3519 | MS.gene80256:intron | 20.0% |
| !! | TGTATATACTTTATGGAAAT+AGG | + | 43355:4202-4221 | MS.gene80256:intron | 20.0% |
| !! | TTATATGTCAAAAATAGCAA+TGG | + | 43355:2074-2093 | MS.gene80256:CDS | 20.0% |
| !! | TTATTGAATACAAGAAACAT+TGG | + | 43355:2977-2996 | MS.gene80256:CDS | 20.0% |
| !!! | AAATACTTTGGAAAAAATTG+AGG | - | 43355:2343-2362 | None:intergenic | 20.0% |
| !!! | AATACTTTGGAAAAAATTGA+GGG | - | 43355:2342-2361 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTTGTGTGTGAA+TGG | - | 43355:3401-3420 | None:intergenic | 20.0% |
| !!! | CTTTTATATAAAAGCTAAGT+AGG | - | 43355:3924-3943 | None:intergenic | 20.0% |
| !!! | TGTTAAAGGACTATATTTTA+TGG | + | 43355:4130-4149 | MS.gene80256:CDS | 20.0% |
| !!! | TTGTTTTAAAAGGACAAAAA+AGG | - | 43355:3337-3356 | None:intergenic | 20.0% |
| ! | AAAGTGAAAAATATTGATCC+GGG | - | 43355:3487-3506 | None:intergenic | 25.0% |
| ! | AACTGGTATGATCTTAAATA+TGG | + | 43355:3191-3210 | MS.gene80256:CDS | 25.0% |
| ! | AAGCTCATAAAGAAATCAAT+AGG | + | 43355:3142-3161 | MS.gene80256:CDS | 25.0% |
| ! | AATATGGTGAAGAAATTAAG+AGG | + | 43355:3207-3226 | MS.gene80256:CDS | 25.0% |
| ! | ACAACAATTTCCAACATAAT+TGG | + | 43355:4074-4093 | MS.gene80256:CDS | 25.0% |
| ! | AGATATAGTGTCAAATACTT+TGG | - | 43355:2355-2374 | None:intergenic | 25.0% |
| ! | ATGATGAAGTTTGAATACTA+AGG | - | 43355:2172-2191 | None:intergenic | 25.0% |
| ! | ATTAAGAATTGCATTTGGAT+TGG | + | 43355:4809-4828 | MS.gene80256:CDS | 25.0% |
| ! | CAATAGGAAGAAAAATTCTT+TGG | + | 43355:3158-3177 | MS.gene80256:CDS | 25.0% |
| ! | CAGTATTATTTAGAAAAAGG+TGG | - | 43355:4560-4579 | None:intergenic | 25.0% |
| ! | CTTTACATTTATAATAGTGG+TGG | + | 43355:3503-3522 | MS.gene80256:intron | 25.0% |
| ! | GGAAAATTAAGAATTGCATT+TGG | + | 43355:4804-4823 | MS.gene80256:CDS | 25.0% |
| ! | GTAGTACAAATTAATCATGT+TGG | + | 43355:3281-3300 | MS.gene80256:intron | 25.0% |
| !! | AAAACATCATGACACAATTT+TGG | + | 43355:3792-3811 | MS.gene80256:intron | 25.0% |
| !! | AAACATCATGACACAATTTT+GGG | + | 43355:3793-3812 | MS.gene80256:intron | 25.0% |
| !! | ATACTTTGAGTTAAATTTGG+TGG | - | 43355:4535-4554 | None:intergenic | 25.0% |
| !! | GTCATACTTTGAGTTAAATT+TGG | - | 43355:4538-4557 | None:intergenic | 25.0% |
| !! | TAAAGGTCTAATTTTATCAC+TGG | + | 43355:3820-3839 | MS.gene80256:intron | 25.0% |
| !! | TACTTTGAGTTAAATTTGGT+GGG | - | 43355:4534-4553 | None:intergenic | 25.0% |
| !! | TTAGGTCTAATTTTACTTGA+TGG | - | 43355:2279-2298 | None:intergenic | 25.0% |
| !! | TTCACAAATATCGACTATAT+TGG | - | 43355:2599-2618 | None:intergenic | 25.0% |
| !! | TTTGACACTATATCTGATTT+TGG | + | 43355:2360-2379 | MS.gene80256:CDS | 25.0% |
| !!! | AATTTTTTGTCACTTAGCTT+TGG | - | 43355:3096-3115 | None:intergenic | 25.0% |
| !!! | CAAAGTGTTGTATACAAATT+TGG | - | 43355:4042-4061 | None:intergenic | 25.0% |
| !!! | GCTTAATTTTCTTTGGAATT+CGG | + | 43355:2897-2916 | MS.gene80256:CDS | 25.0% |
| !!! | TTTTTGAAAAACTCGATATC+TGG | + | 43355:2654-2673 | MS.gene80256:intron | 25.0% |
| AAAGAAGTGAAATCAAGACT+TGG | + | 43355:2504-2523 | MS.gene80256:CDS | 30.0% | |
| AAGATGATGTAACACCAATT+AGG | + | 43355:2412-2431 | MS.gene80256:CDS | 30.0% | |
| ACCAAAATGGAGAGAAAAAA+TGG | + | 43355:1962-1981 | MS.gene80256:CDS | 30.0% | |
| ATCATTTACATACTTACCTC+TGG | - | 43355:4167-4186 | None:intergenic | 30.0% | |
| ATGATATGAATTTCCCAAAG+CGG | - | 43355:2120-2139 | None:intergenic | 30.0% | |
| ATTCAATAAAACCAATGCTG+TGG | - | 43355:2966-2985 | None:intergenic | 30.0% | |
| CTACAGTAGACATGAAATAA+TGG | - | 43355:3265-3284 | None:intergenic | 30.0% | |
| GCAAAAATTCATTTCATGCA+TGG | + | 43355:4851-4870 | MS.gene80256:CDS | 30.0% | |
| GCTTCCCATATAAATTCAAT+TGG | - | 43355:3126-3145 | None:intergenic | 30.0% | |
| GGAAATGATCTCTTGAAAAA+TGG | - | 43355:2321-2340 | None:intergenic | 30.0% | |
| TACATCAATATTTATCCCGA+TGG | + | 43355:3527-3546 | MS.gene80256:intron | 30.0% | |
| TGCTTGAATCTTGATTCATT+TGG | - | 43355:2934-2953 | None:intergenic | 30.0% | |
| TTATAAGTCACTTAAGGAGA+TGG | + | 43355:3003-3022 | MS.gene80256:intron | 30.0% | |
| TTGAATACAAGAAACATTGG+AGG | + | 43355:2980-2999 | MS.gene80256:CDS | 30.0% | |
| ! | ACACTATATCTGATTTTGGA+TGG | + | 43355:2364-2383 | MS.gene80256:CDS | 30.0% |
| ! | GGACTATATTTTATGGTTGT+TGG | + | 43355:4137-4156 | MS.gene80256:CDS | 30.0% |
| ! | TTACTTGATGGTAATGTGAA+TGG | - | 43355:2267-2286 | None:intergenic | 30.0% |
| ! | TTTAAGATCATACCAGTTAG+AGG | - | 43355:3189-3208 | None:intergenic | 30.0% |
| !! | ATAGCTGGCTTAATTTTCTT+TGG | + | 43355:2890-2909 | MS.gene80256:CDS | 30.0% |
| !!! | TCCATTTTTTCTCTCCATTT+TGG | - | 43355:1966-1985 | None:intergenic | 30.0% |
| !!! | TTGTTTGGTTTTTTCTCCAA+TGG | + | 43355:4481-4500 | MS.gene80256:intron | 30.0% |
| ATAACCATCATGAGCTACAT+GGG | + | 43355:4783-4802 | MS.gene80256:CDS | 35.0% | |
| ATTTACATACTTACCTCTGG+TGG | - | 43355:4164-4183 | None:intergenic | 35.0% | |
| CAAATATCAATCCACAGCAT+TGG | + | 43355:2952-2971 | MS.gene80256:CDS | 35.0% | |
| GTAATGTGAATGGAAGAGAA+GGG | - | 43355:2257-2276 | None:intergenic | 35.0% | |
| TATATTTATGTCACCACTCC+CGG | + | 43355:3466-3485 | MS.gene80256:intron | 35.0% | |
| TATCCAACAAAAAATGCAGC+TGG | + | 43355:2144-2163 | MS.gene80256:CDS | 35.0% | |
| TGGAGGTTATAAGTCACTTA+AGG | + | 43355:2997-3016 | MS.gene80256:intron | 35.0% | |
| TTCAAACTTCATCATGCACT+TGG | + | 43355:2177-2196 | MS.gene80256:CDS | 35.0% | |
| TTGGCTAATCATCCTGTTAA+AGG | + | 43355:4116-4135 | MS.gene80256:CDS | 35.0% | |
| ! | ACACAATTTTGGGCATGTAA+AGG | + | 43355:3803-3822 | MS.gene80256:intron | 35.0% |
| ! | ATCATCCTCTTCCTTTTCTA+TGG | + | 43355:3566-3585 | MS.gene80256:intron | 35.0% |
| !! | ACAATGATAATGGTTCAGCT+TGG | + | 43355:3038-3057 | MS.gene80256:intron | 35.0% |
| !! | ATAGAGTGATGATTTGCTAG+TGG | - | 43355:2037-2056 | None:intergenic | 35.0% |
| !! | CAATGATAATGGTTCAGCTT+GGG | + | 43355:3039-3058 | MS.gene80256:intron | 35.0% |
| !! | GAAAGTTGATGTCAAAGTAG+AGG | + | 43355:1987-2006 | MS.gene80256:CDS | 35.0% |
| !! | TAGAGTGATGATTTGCTAGT+GGG | - | 43355:2036-2055 | None:intergenic | 35.0% |
| !!! | TTTGGTTTTTTCTCCAATGG+TGG | + | 43355:4484-4503 | MS.gene80256:intron | 35.0% |
| AGCACAAATGATGTGATAGC+TGG | + | 43355:2875-2894 | MS.gene80256:CDS | 40.0% | |
| AGTGAAATCAAGACTTGGAG+TGG | + | 43355:2509-2528 | MS.gene80256:CDS | 40.0% | |
| ATGGCTCGACAATTCTAAGT+CGG | + | 43355:3585-3604 | MS.gene80256:intron | 40.0% | |
| CATAACCATCATGAGCTACA+TGG | + | 43355:4782-4801 | MS.gene80256:CDS | 40.0% | |
| CATGTAGCTCATGATGGTTA+TGG | - | 43355:4784-4803 | None:intergenic | 40.0% | |
| CTCAAGTGTCTCATTCTCTA+TGG | + | 43355:2473-2492 | MS.gene80256:CDS | 40.0% | |
| GAAAAATATTGATCCGGGAG+TGG | - | 43355:3482-3501 | None:intergenic | 40.0% | |
| GAATTGTCGAGCCATAGAAA+AGG | - | 43355:3580-3599 | None:intergenic | 40.0% | |
| GGAGATGGTTACTCTCTAAT+GGG | + | 43355:2198-2217 | MS.gene80256:CDS | 40.0% | |
| GGTAATGTGAATGGAAGAGA+AGG | - | 43355:2258-2277 | None:intergenic | 40.0% | |
| GTGAGGATGATATCAAGCTA+AGG | + | 43355:2439-2458 | MS.gene80256:CDS | 40.0% | |
| TCATCCTCACAAGACCTAAT+TGG | - | 43355:2429-2448 | None:intergenic | 40.0% | |
| TGGAGATGGTTACTCTCTAA+TGG | + | 43355:2197-2216 | MS.gene80256:CDS | 40.0% | |
| TTCCAACATAATTGGACCAG+TGG | + | 43355:4082-4101 | MS.gene80256:CDS | 40.0% | |
| ! | AACACCAATTAGGTCTTGTG+AGG | + | 43355:2422-2441 | MS.gene80256:CDS | 40.0% |
| ! | ATCCATCATTTTCACCATGC+TGG | + | 43355:4230-4249 | MS.gene80256:intron | 40.0% |
| ! | TTTTCCCATGTAGCTCATGA+TGG | - | 43355:4790-4809 | None:intergenic | 40.0% |
| !! | GATTTGCTAGTGGGAAACAT+AGG | - | 43355:2027-2046 | None:intergenic | 40.0% |
| !! | TTAAATTTGGTGGGCTCAAG+TGG | - | 43355:4525-4544 | None:intergenic | 40.0% |
| !!! | GTACCAGCTGCATTTTTTGT+TGG | - | 43355:2150-2169 | None:intergenic | 40.0% |
| AATTGGACCAGTGGAGCAAA+TGG | + | 43355:4091-4110 | MS.gene80256:CDS | 45.0% | |
| ACCACAAGATAGACCGCTTT+GGG | + | 43355:2104-2123 | MS.gene80256:CDS | 45.0% | |
| CACCAGCATGGTGAAAATGA+TGG | - | 43355:4235-4254 | None:intergenic | 45.0% | |
| CCGAACTAGATTGACACCAT+CGG | - | 43355:3546-3565 | None:intergenic | 45.0% | |
| CGAACTAGATTGACACCATC+GGG | - | 43355:3545-3564 | None:intergenic | 45.0% | |
| CTAAGCATAGCTACCTACCT+CGG | - | 43355:3235-3254 | None:intergenic | 45.0% | |
| CTCCACTGGTCCAATTATGT+TGG | - | 43355:4087-4106 | None:intergenic | 45.0% | |
| CTTCATCATGCACTTGGAGA+TGG | + | 43355:2183-2202 | MS.gene80256:CDS | 45.0% | |
| GATCATACCAGTTAGAGGTG+TGG | - | 43355:3184-3203 | None:intergenic | 45.0% | |
| GGCTCAAGTGGTATCCAAAA+AGG | - | 43355:4513-4532 | None:intergenic | 45.0% | |
| TAAGCATAGCTACCTACCTC+GGG | - | 43355:3234-3253 | None:intergenic | 45.0% | |
| TACCACAAGATAGACCGCTT+TGG | + | 43355:2103-2122 | MS.gene80256:CDS | 45.0% | |
| TCGAGCCATAGAAAAGGAAG+AGG | - | 43355:3574-3593 | None:intergenic | 45.0% | |
| TGGTTATGGTTAGACTCTGC+AGG | - | 43355:4770-4789 | None:intergenic | 45.0% | |
| ! | CCGATGGTGTCAATCTAGTT+CGG | + | 43355:3543-3562 | MS.gene80256:intron | 45.0% |
| !! | AGAAGCATCTTTCACCAGCA+TGG | - | 43355:4247-4266 | None:intergenic | 45.0% |
| !!! | GGTTTTTTCTCCAATGGTGG+TGG | + | 43355:4487-4506 | MS.gene80256:intron | 45.0% |
| AAATTAAGAGGCCCCGAGGT+AGG | + | 43355:3219-3238 | MS.gene80256:intron | 50.0% | |
| AAGCATAGCTACCTACCTCG+GGG | - | 43355:3233-3252 | None:intergenic | 50.0% | |
| ACCAGTGGAGCAAATGGCTT+TGG | + | 43355:4097-4116 | MS.gene80256:CDS | 50.0% | |
| GAAGAAATTAAGAGGCCCCG+AGG | + | 43355:3215-3234 | MS.gene80256:CDS | 50.0% | |
| TATGGTTGTTGGTCCACCAG+AGG | + | 43355:4148-4167 | MS.gene80256:CDS | 50.0% | |
| TCCAAAAAGGCCACCACCAT+TGG | - | 43355:4500-4519 | None:intergenic | 50.0% | |
| TCCCAAAGCGGTCTATCTTG+TGG | - | 43355:2108-2127 | None:intergenic | 50.0% | |
| TCTTTGGCCACACCTCTAAC+TGG | + | 43355:3174-3193 | MS.gene80256:CDS | 50.0% | |
| !!! | TCCAATGGTGGTGGCCTTTT+TGG | + | 43355:4496-4515 | MS.gene80256:intron | 50.0% |
| GCCAAAGCCATTTGCTCCAC+TGG | - | 43355:4101-4120 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43355 | gene | 1955 | 4923 | 1955 | ID=MS.gene80256 |
| 43355 | mRNA | 1955 | 4923 | 1955 | ID=MS.gene80256.t1;Parent=MS.gene80256 |
| 43355 | exon | 1955 | 2530 | 1955 | ID=MS.gene80256.t1.exon1;Parent=MS.gene80256.t1 |
| 43355 | CDS | 1955 | 2530 | 1955 | ID=cds.MS.gene80256.t1;Parent=MS.gene80256.t1 |
| 43355 | exon | 2875 | 3008 | 2875 | ID=MS.gene80256.t1.exon2;Parent=MS.gene80256.t1 |
| 43355 | CDS | 2875 | 3008 | 2875 | ID=cds.MS.gene80256.t1;Parent=MS.gene80256.t1 |
| 43355 | exon | 3056 | 3236 | 3056 | ID=MS.gene80256.t1.exon3;Parent=MS.gene80256.t1 |
| 43355 | CDS | 3056 | 3236 | 3056 | ID=cds.MS.gene80256.t1;Parent=MS.gene80256.t1 |
| 43355 | exon | 4032 | 4169 | 4032 | ID=MS.gene80256.t1.exon4;Parent=MS.gene80256.t1 |
| 43355 | CDS | 4032 | 4169 | 4032 | ID=cds.MS.gene80256.t1;Parent=MS.gene80256.t1 |
| 43355 | exon | 4774 | 4923 | 4774 | ID=MS.gene80256.t1.exon5;Parent=MS.gene80256.t1 |
| 43355 | CDS | 4774 | 4923 | 4774 | ID=cds.MS.gene80256.t1;Parent=MS.gene80256.t1 |
| Gene Sequence |
| Protein sequence |
