AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80438

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80438.t1 MTR_6g044600 73.997 723 89 9 1 662 22 706 0.0 1009
MS.gene80438.t1 MTR_6g044600 67.979 762 69 7 629 1247 198 927 0.0 940
MS.gene80438.t1 MTR_6g034375 45.425 623 212 14 646 1244 384 902 1.88e-137 442
MS.gene80438.t1 MTR_6g034375 33.730 252 114 5 40 238 165 416 1.93e-28 124
MS.gene80438.t1 MTR_6g034375 33.168 202 122 3 1 189 16 217 3.47e-21 100
MS.gene80438.t1 MTR_6g034375 36.422 313 120 11 377 662 440 700 1.42e-20 99.0
MS.gene80438.t1 MTR_6g034375 45.425 623 212 15 646 1244 329 847 3.51e-136 437
MS.gene80438.t1 MTR_6g034375 34.981 263 129 7 18 238 99 361 3.01e-32 136
MS.gene80438.t1 MTR_6g034375 36.422 313 120 11 377 662 385 645 1.39e-20 99.0
MS.gene80438.t1 MTR_6g034375 31.818 220 104 4 1 190 16 219 1.73e-20 98.6
MS.gene80438.t1 MTR_6g034375 43.333 120 61 2 84 202 42 155 6.17e-17 87.0
MS.gene80438.t1 MTR_6g044110 36.149 592 209 16 628 1214 265 692 3.41e-77 270
MS.gene80438.t1 MTR_6g044110 35.922 309 138 10 18 314 102 362 2.02e-31 132
MS.gene80438.t1 MTR_1g099270 40.643 342 164 6 931 1234 19 359 1.45e-70 241
MS.gene80438.t1 MTR_1g099270 39.053 338 164 7 931 1230 19 352 3.10e-61 214
MS.gene80438.t1 MTR_2g006220 41.642 341 85 5 875 1176 72 337 1.10e-60 214
MS.gene80438.t1 MTR_2g006220 42.143 140 51 4 546 658 72 208 7.08e-16 81.6
MS.gene80438.t1 MTR_5g098320 43.223 273 91 7 964 1234 5 215 2.08e-58 201
MS.gene80438.t1 MTR_6g052260 55.901 161 65 4 1079 1238 7 162 5.61e-48 175
MS.gene80438.t1 MTR_3g095800 40.288 139 78 2 1094 1231 184 318 8.87e-28 115
MS.gene80438.t1 MTR_5g007180 37.762 143 87 2 1095 1235 779 921 1.36e-22 105
MS.gene80438.t1 MTR_5g007180 37.762 143 87 2 1095 1235 786 928 1.37e-22 105
MS.gene80438.t1 MTR_0001s0570 35.971 139 85 4 1100 1235 789 926 4.18e-21 100
MS.gene80438.t1 MTR_0001s0570 35.971 139 85 4 1100 1235 626 763 4.24e-21 100
MS.gene80438.t1 MTR_0001s0570 35.971 139 85 4 1100 1235 813 950 4.25e-21 100
MS.gene80438.t1 MTR_7g116160 31.852 135 80 4 1096 1219 25 158 9.65e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80438.t1 AT1G43770 46.154 143 74 3 1094 1234 286 427 4.50e-32 131
MS.gene80438.t1 AT1G43770 47.761 67 29 2 963 1028 8 69 1.30e-12 72.0
MS.gene80438.t1 AT1G43770 46.154 143 74 3 1094 1234 286 427 4.50e-32 131
MS.gene80438.t1 AT1G43770 47.761 67 29 2 963 1028 8 69 1.30e-12 72.0
MS.gene80438.t1 AT5G16680 39.706 136 76 3 1100 1231 837 970 2.39e-25 114
MS.gene80438.t1 AT5G16680 39.706 136 76 3 1100 1231 837 970 2.39e-25 114
MS.gene80438.t1 AT3G02890 36.054 147 90 3 1087 1231 689 833 8.54e-24 109
MS.gene80438.t1 AT3G02890 36.054 147 90 3 1087 1231 630 774 4.88e-23 107
MS.gene80438.t1 AT3G02890 35.556 135 83 3 1087 1219 689 821 2.47e-18 91.7
MS.gene80438.t1 AT1G43770 42.353 85 47 2 1094 1177 286 369 5.09e-13 72.8
MS.gene80438.t1 AT1G43770 47.761 67 29 2 963 1028 8 69 1.30e-12 71.6

Find 281 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAATTTCCGGAAACTTTC+TGG 0.060016 6.3:-39150125 None:intergenic
AACATTCTTGTGCTTTAAAA+TGG 0.145815 6.3:-39146822 None:intergenic
AACATTCTTGTGCTTTAAAA+TGG 0.145815 6.3:-39147911 None:intergenic
CCAGAAAGTTTCCGGAAATT+TGG 0.177782 6.3:+39150125 MS.gene80438:CDS
GTAGAACTTCCAGAAGAATT+TGG 0.198899 6.3:-39147817 None:intergenic
CTGTTTGGCCAGAAAGTTTC+CGG 0.199059 6.3:+39150117 MS.gene80438:CDS
GATTATTCGTTCCAAATTTC+CGG 0.199087 6.3:-39150136 None:intergenic
GAGATTACTGATTCAGAAAA+AGG 0.208458 6.3:+39149663 MS.gene80438:CDS
GAGATTACTGATTCAGAAAA+AGG 0.208458 6.3:+39149759 MS.gene80438:CDS
AGACTATTTCCAAATTCTTC+TGG 0.228796 6.3:+39146503 MS.gene80438:CDS
GGATTCATTCCAGAAGAATT+TGG 0.234605 6.3:-39146512 None:intergenic
TGGTTCCAAGCGTGATATTA+TGG 0.252107 6.3:+39146898 MS.gene80438:CDS
CTCTTATCAGAATAGGGTTT+TGG 0.267805 6.3:-39146230 None:intergenic
AGAGTATTTCCAAATTCTTC+TGG 0.270406 6.3:+39147808 MS.gene80438:CDS
AACCCATATCGTGAGGAATT+TGG 0.271846 6.3:-39145800 None:intergenic
TTACCAAATTCCTCACGATA+TGG 0.276285 6.3:+39145797 MS.gene80438:CDS
TCCAAAGGATCGCGGTTTAA+AGG 0.279535 6.3:+39146775 MS.gene80438:CDS
ATGGTTCCAAGCTTGATATT+AGG 0.296169 6.3:+39147986 MS.gene80438:CDS
TCCAATGGATCGTGGTTTAA+AGG 0.309194 6.3:+39147864 MS.gene80438:CDS
GTGTGTGGCTTCACCTAAAA+TGG 0.312172 6.3:+39148146 MS.gene80438:CDS
TGGTTCCAAGCTTGATATTA+GGG 0.320333 6.3:+39147987 MS.gene80438:CDS
CCCTTTAAACCGCGATCCTT+TGG 0.323653 6.3:-39146776 None:intergenic
CTCCAGATTGGATCAGAAAT+AGG 0.331134 6.3:-39149837 None:intergenic
TTTGACTGCCGACGTTGTAC+TGG 0.333909 6.3:-39146338 None:intergenic
TTTGTCTCCTCGAGAACTTT+AGG 0.338816 6.3:-39150050 None:intergenic
CTGGTTCTCAACAAAAGCTT+TGG 0.340102 6.3:+39149981 MS.gene80438:CDS
AAATACATGAAGATGGATAA+TGG 0.341748 6.3:+39146935 MS.gene80438:CDS
AAATACATGAAGATGGATAA+TGG 0.341748 6.3:+39148024 MS.gene80438:CDS
AATACATGAAGATGGATAAT+GGG 0.343174 6.3:+39146936 MS.gene80438:CDS
AATACATGAAGATGGATAAT+GGG 0.343174 6.3:+39148025 MS.gene80438:CDS
GGATAATAGGGGAAGTTTGC+TGG 0.348401 6.3:+39149962 MS.gene80438:intron
CATTCTGAGGAAAGAAATAA+AGG 0.350239 6.3:-39150169 None:intergenic
TTAGATTCTGCGACTTTCAT+AGG 0.351702 6.3:-39146545 None:intergenic
TTGTTATCGGCATAGTCTTC+CGG 0.352583 6.3:-39146188 None:intergenic
CAGAATTCACAACTTCTGTT+TGG 0.354750 6.3:-39147372 None:intergenic
CAGAATTCACAACTTCTGTT+TGG 0.354750 6.3:-39148359 None:intergenic
GTAGATTCTAAATTGAAATC+TGG 0.366324 6.3:+39146638 MS.gene80438:CDS
TGAACCAGCATCATGTATCT+TGG 0.369166 6.3:-39150678 None:intergenic
CTTCTATCAGCAAAGTCTTC+TGG 0.373088 6.3:-39146146 None:intergenic
TCAAAACTAGATCCTTCAAC+AGG 0.378708 6.3:-39148177 None:intergenic
TTTCAAGCAGAAGAATGTTC+TGG 0.381610 6.3:+39146715 MS.gene80438:CDS
TCGAAACTAGATCCTTCAAC+AGG 0.387766 6.3:-39147226 None:intergenic
ATGTCTGCTTCAAGCACATT+AGG 0.388418 6.3:-39150080 None:intergenic
CAAATTTCTTACCTCCAGAT+TGG 0.390376 6.3:-39149849 None:intergenic
CCAAAGGATCGCGGTTTAAA+GGG 0.394824 6.3:+39146776 MS.gene80438:CDS
ACTTCCTTGTTGCTGAATCT+AGG 0.399650 6.3:-39146608 None:intergenic
TGTTTGGAAGGACATAATAA+TGG 0.400355 6.3:+39147724 MS.gene80438:CDS
GACTGAACCTGACTTATCAT+TGG 0.401027 6.3:-39146993 None:intergenic
TGTTTCGAAGAACATAATAA+TGG 0.401712 6.3:+39146404 MS.gene80438:CDS
AGCAGTTGCACATCCTTTGC+TGG 0.405487 6.3:-39149793 None:intergenic
AGTCTACTATCTCGTCCATT+TGG 0.409427 6.3:-39146485 None:intergenic
CAATTGGTGAATGCCTCAAC+AGG 0.410343 6.3:+39147310 MS.gene80438:CDS
CACTTATCAGCAAAGTCTTC+CGG 0.410527 6.3:-39146272 None:intergenic
ACCTGACTTATCATTGGTCT+CGG 0.411914 6.3:-39146987 None:intergenic
TAGATTCTAAATTGAAATCT+GGG 0.412421 6.3:+39146639 MS.gene80438:CDS
ACTCTACTATCTCGTCCATT+TGG 0.417856 6.3:-39147790 None:intergenic
CTGATCTTGCCATGAGAGCT+AGG 0.420778 6.3:+39150464 MS.gene80438:CDS
TACCAAATTCCTCACGATAT+GGG 0.422393 6.3:+39145798 MS.gene80438:CDS
TAAGCGCCTCTTATCAGAAT+AGG 0.423349 6.3:-39146237 None:intergenic
AAGGTCTAAACGGAAACTTA+TGG 0.424588 6.3:+39146853 MS.gene80438:CDS
AAGGTCTAAACGGAAACTTA+TGG 0.424588 6.3:+39147942 MS.gene80438:CDS
TAAGATGCATCACAACTGTT+TGG 0.425627 6.3:+39147708 MS.gene80438:CDS
AAGCGCCTCTTATCAGAATA+GGG 0.427203 6.3:-39146236 None:intergenic
ACATTCTTGTGCTTTAAAAT+GGG 0.428018 6.3:-39146821 None:intergenic
ACATTCTTGTGCTTTAAAAT+GGG 0.428018 6.3:-39147910 None:intergenic
CAAAACCCTATTCTGATAAG+AGG 0.428741 6.3:+39146231 MS.gene80438:CDS
TGATTCAAAGAGAAGCTGTT+TGG 0.429192 6.3:+39150102 MS.gene80438:CDS
CTTGATTTAGCATTGGCATC+AGG 0.430313 6.3:-39147124 None:intergenic
TTTAATCCTGGTCTTTGGAC+TGG 0.432062 6.3:-39147160 None:intergenic
TGCTAAGGATCTCGATTTCA+AGG 0.436779 6.3:+39146673 MS.gene80438:CDS
CTCTTATCAACATAGCATTC+CGG 0.437391 6.3:-39146020 None:intergenic
TTGACTGCCGACGTTGTACT+GGG 0.437538 6.3:-39146337 None:intergenic
ATGTGGTAAGCACTTGTTAT+CGG 0.438398 6.3:-39146201 None:intergenic
TTTGACTGCCGACTTTGTAC+TGG 0.438699 6.3:-39147658 None:intergenic
ACCTGACTTAGCATTGGCCT+CGG 0.441529 6.3:-39148076 None:intergenic
TAATCGAAGTTCAAGTTCAA+TGG 0.443252 6.3:-39145777 None:intergenic
AACCTATTTCTGATCCAATC+TGG 0.445687 6.3:+39149835 MS.gene80438:CDS
TGCAGACGAAAGTTCTCATT+CGG 0.449991 6.3:+39148557 MS.gene80438:CDS
ACATTCTTCTGCTTGAAACT+AGG 0.456561 6.3:-39146710 None:intergenic
CCAATGGATCGTGGTTTAAA+GGG 0.457507 6.3:+39147865 MS.gene80438:CDS
TCAATCAAAGTATTACTTGT+GGG 0.458599 6.3:+39150628 MS.gene80438:CDS
TTTCTTGGGAGCATTGTAGA+AGG 0.462370 6.3:-39150514 None:intergenic
GGTTCCAAGCGTGATATTAT+GGG 0.462595 6.3:+39146899 MS.gene80438:CDS
CCCTTTAAACCACGATCCAT+TGG 0.463751 6.3:-39147865 None:intergenic
AGTTGGCACGCTTCTGTAAG+AGG 0.466919 6.3:+39145979 MS.gene80438:CDS
TAGTGTCCCGGCATTTGATC+AGG 0.467004 6.3:-39146050 None:intergenic
GGAAGTTCTACAAGGAAACT+TGG 0.468289 6.3:+39147829 MS.gene80438:CDS
CCTGACTTAGCATTGGCCTC+GGG 0.472589 6.3:-39148075 None:intergenic
TGTTCTTCGAAACATTTGTC+AGG 0.473833 6.3:-39146395 None:intergenic
AAATCTCCAGTCGAAAGATC+TGG 0.475630 6.3:+39147085 MS.gene80438:CDS
TGTCTTACATGTGGCGATGT+AGG 0.476362 6.3:+39148772 MS.gene80438:CDS
CAATTGGTGAATGCTTCAAC+AGG 0.476955 6.3:+39148297 MS.gene80438:CDS
GACTGAACTTGATTTAGCAT+TGG 0.476958 6.3:-39147131 None:intergenic
TCATTTATGACTACTACATA+TGG 0.479234 6.3:-39149588 None:intergenic
CAATCAGTTGGAATATCAAA+GGG 0.480975 6.3:+39145875 MS.gene80438:CDS
AAATTCTTCTGGAATGAATC+CGG 0.481047 6.3:+39146514 MS.gene80438:CDS
GAAAGTTCTACAAGGAAACT+TGG 0.481174 6.3:+39146740 MS.gene80438:CDS
CCAGGATTAAAACAACCATC+AGG 0.483015 6.3:+39147172 MS.gene80438:CDS
ATGACACCAATCCCTGTTGA+AGG 0.483460 6.3:+39147214 MS.gene80438:CDS
TTCAATTTAGAATCTACAGC+TGG 0.484202 6.3:-39146632 None:intergenic
AAAGTATGATCAGCCACAAT+TGG 0.484347 6.3:+39148281 MS.gene80438:CDS
TTCCGTTTAGACCTTTCAGC+TGG 0.484996 6.3:-39146845 None:intergenic
TTCCGTTTAGACCTTTCAGC+TGG 0.484996 6.3:-39147934 None:intergenic
AGCTTTGGCAAAATCATCAC+TGG 0.485181 6.3:+39149996 MS.gene80438:CDS
AGGCAATGATCAGCCACAAT+TGG 0.486643 6.3:+39147294 MS.gene80438:CDS
CTTCATGTATTTATCTCCTA+CGG 0.488068 6.3:-39146924 None:intergenic
CTTCATGTATTTATCTCCTA+CGG 0.488068 6.3:-39148013 None:intergenic
GGAACGAATAATCTAAGCAT+TGG 0.489375 6.3:+39150146 MS.gene80438:CDS
CGGAATGCTATGTTGATAAG+AGG 0.489640 6.3:+39146021 MS.gene80438:CDS
CTAGATCCTTCAACAGGGAT+TGG 0.489717 6.3:-39147220 None:intergenic
CCCGAGGTCAATGCTAAGTC+AGG 0.490205 6.3:+39147055 MS.gene80438:CDS
CCCGAGGCCAATGCTAAGTC+AGG 0.490205 6.3:+39148075 MS.gene80438:CDS
AAACATGATGCTGATGCATC+TGG 0.493190 6.3:-39147442 None:intergenic
TTCCAGCTGAAAGGTCTAAA+CGG 0.495192 6.3:+39146843 MS.gene80438:CDS
TTCCAGCTGAAAGGTCTAAA+CGG 0.495192 6.3:+39147932 MS.gene80438:CDS
CCTGACTTATCATTGGTCTC+GGG 0.495496 6.3:-39146986 None:intergenic
CCTGGATTAAAACAACCATC+AGG 0.495537 6.3:+39148123 MS.gene80438:CDS
AAAGTTCTACAAGGAAACTT+GGG 0.495852 6.3:+39146741 MS.gene80438:CDS
AAACATGACGCTGATGCATC+TGG 0.496309 6.3:-39148429 None:intergenic
TTCTCAGTCGGAAGTGGAGA+TGG 0.497579 6.3:+39147582 MS.gene80438:CDS
TTCTCATTCGGAAGTGGAGA+TGG 0.497579 6.3:+39148569 MS.gene80438:CDS
CTAGATCCTTCAACAGGGAT+TGG 0.498053 6.3:-39148171 None:intergenic
CAGAAGACTTTGCTGATAGA+AGG 0.500765 6.3:+39146147 MS.gene80438:CDS
CGAAAGTTCTCAGTCGGAAG+TGG 0.502003 6.3:+39147576 MS.gene80438:CDS
GAAGTTCTACAAGGAAACTT+GGG 0.502672 6.3:+39147830 MS.gene80438:CDS
GACTGAACCTGACTTAGCAT+TGG 0.505287 6.3:-39148082 None:intergenic
TTTACTCCAGATCTTTCGAC+TGG 0.506014 6.3:-39147091 None:intergenic
CGTCACCGTGTCAAAACCGC+TGG 0.507222 6.3:+39147612 MS.gene80438:CDS
TTTATCAACCCTAGCTCTCA+TGG 0.507615 6.3:-39150473 None:intergenic
ATGGATAACACTGGTGCAAA+GGG 0.511368 6.3:+39147961 MS.gene80438:CDS
CAGTTACCTGATCAAATGCC+GGG 0.514222 6.3:+39146044 MS.gene80438:CDS
ACTTTCATAGGTTGAAATAC+CGG 0.514340 6.3:-39146533 None:intergenic
GTCACCGCTATGCTGATGAT+AGG 0.514888 6.3:+39145898 MS.gene80438:CDS
TCAGAAGTTTCAAAATATTG+TGG 0.517015 6.3:+39148257 MS.gene80438:CDS
AGGAGATAAATACATGAAGA+TGG 0.517228 6.3:+39146928 MS.gene80438:CDS
AGGAGATAAATACATGAAGA+TGG 0.517228 6.3:+39148017 MS.gene80438:CDS
ACAATCAGTTGGAATATCAA+AGG 0.519007 6.3:+39145874 MS.gene80438:CDS
CGAAAGTTCTCATTCGGAAG+TGG 0.519416 6.3:+39148563 MS.gene80438:CDS
CTTTGTACTGGAGCTATAGC+AGG 0.519983 6.3:-39147646 None:intergenic
AGAGACAACTAAGTTGCCTC+AGG 0.520643 6.3:+39148611 MS.gene80438:CDS
ATGGCACCAATCCCTGTTGA+AGG 0.520765 6.3:+39148165 MS.gene80438:CDS
TCTAATATGACACACACTGC+TGG 0.521152 6.3:+39147334 MS.gene80438:CDS
GCCATTCGATGATTTCAGTC+GGG 0.522617 6.3:+39145752 MS.gene80438:CDS
ATTTCTTTCCTCAGAATGAA+AGG 0.523461 6.3:+39150174 MS.gene80438:CDS
GGCTCCCATAATATCACGCT+TGG 0.524229 6.3:-39146903 None:intergenic
TGCTCACCGCATCAAACGCT+GGG 0.524435 6.3:+39146293 MS.gene80438:CDS
AAATCATTTCATCAACTAGC+TGG 0.525411 6.3:-39150438 None:intergenic
AACACTGGTGCAAAGGATGA+TGG 0.525656 6.3:+39146878 MS.gene80438:CDS
AATACAGTCTCGACACGTCT+CGG 0.525751 6.3:+39147249 MS.gene80438:CDS
ATTCTTCTGGAAGTTCTACA+AGG 0.526793 6.3:+39147821 MS.gene80438:CDS
GGCTCCCCTAATATCAAGCT+TGG 0.527352 6.3:-39147992 None:intergenic
GGGGCTAACGCAGGAATAGT+TGG 0.528419 6.3:-39146317 None:intergenic
GCATTTACCACGGCAAAGGC+CGG 0.529195 6.3:+39146001 MS.gene80438:CDS
ATTGGATCAGAAATAGGTTG+TGG 0.529705 6.3:-39149831 None:intergenic
TTGTTAGTCATAGAACCAGC+AGG 0.530446 6.3:-39148336 None:intergenic
CTCTTGTCACTGTAGTGTCC+CGG 0.532736 6.3:-39146062 None:intergenic
CTTTGCTGATGACAATCAGT+TGG 0.533358 6.3:+39145863 MS.gene80438:CDS
TTGGGTGTTCGATGCGGCAA+AGG 0.534519 6.3:-39146086 None:intergenic
GGAGCTATAGCAGGAATAGT+TGG 0.535109 6.3:-39147637 None:intergenic
ACGGAACTTAGTGTTCCAAA+TGG 0.536759 6.3:+39147775 MS.gene80438:CDS
TCTAATATGACAGACCCTGC+TGG 0.537237 6.3:+39148321 MS.gene80438:CDS
GTGCTCACCGCATCAAACGC+TGG 0.537759 6.3:+39146292 MS.gene80438:CDS
CCCGAGACCAATGATAAGTC+AGG 0.538183 6.3:+39146986 MS.gene80438:CDS
TTCAATCAAAGTATTACTTG+TGG 0.538588 6.3:+39150627 MS.gene80438:CDS
GTAAAGCTTGTGCACTGCAT+AGG 0.540182 6.3:+39148827 MS.gene80438:CDS
GTTGAGGCATTCACCAATTG+TGG 0.541328 6.3:-39147307 None:intergenic
ACGGAACGTAGTGTTCCAAA+TGG 0.541412 6.3:+39146470 MS.gene80438:CDS
AACTTTAGGACATGCTAAAG+TGG 0.542230 6.3:-39150036 None:intergenic
TATGGATAACACTGGTGCAA+AGG 0.542604 6.3:+39147960 MS.gene80438:CDS
TGGGGATTATGCTGGTGCTA+AGG 0.542858 6.3:+39146658 MS.gene80438:CDS
TGGGGATAACACTGGTCCAA+TGG 0.550503 6.3:+39147849 MS.gene80438:CDS
TGCTGATGTGTGATGTGATG+AGG 0.552890 6.3:-39145838 None:intergenic
TGCTGATGTGTGATGTGATG+AGG 0.552890 6.3:-39145922 None:intergenic
ATGCATCACAACTGTTTGGA+AGG 0.554830 6.3:+39147712 MS.gene80438:CDS
CCTGACTTAGCATTGACCTC+GGG 0.554961 6.3:-39147055 None:intergenic
GTCCTTACCACATCAAAAGC+CGG 0.557291 6.3:+39146169 MS.gene80438:CDS
GCAGTTACCTGATCAAATGC+CGG 0.558021 6.3:+39146043 MS.gene80438:CDS
TGCCATTCGATGATTTCAGT+CGG 0.559379 6.3:+39145751 MS.gene80438:CDS
AATACAGTCTCGACATGTCT+CGG 0.561633 6.3:+39148200 MS.gene80438:CDS
GGTGAAGTCGATTCCAGCAA+AGG 0.562633 6.3:+39149780 MS.gene80438:CDS
GTTGAAGCATTCACCAATTG+TGG 0.562816 6.3:-39148294 None:intergenic
AACACTGGTGCAAAGGGTGA+TGG 0.563073 6.3:+39147967 MS.gene80438:CDS
AAACCTCACCTTTCATTCTG+AGG 0.563475 6.3:-39150182 None:intergenic
AAGTCTTCTGGCGTTTGAAG+TGG 0.564344 6.3:-39146134 None:intergenic
TTGAAATCTGGGGATTATGC+TGG 0.566263 6.3:+39146650 MS.gene80438:CDS
TATGGATAACACTGGTGCAA+AGG 0.568680 6.3:+39146871 MS.gene80438:CDS
ACAAGAATGTTCCAGCTGAA+AGG 0.570140 6.3:+39146834 MS.gene80438:CDS
ACAAGAATGTTCCAGCTGAA+AGG 0.570140 6.3:+39147923 MS.gene80438:CDS
TCAAGTATCGGAAGCTGCAG+TGG 0.570258 6.3:+39147507 MS.gene80438:CDS
TCAAGTATCGGAAGCTGCAG+TGG 0.570258 6.3:+39148494 MS.gene80438:CDS
GCTGATGTGTGATGTGATGA+GGG 0.571410 6.3:-39145921 None:intergenic
ACGCTTAAAAGATCGAAAGT+TGG 0.571704 6.3:+39145962 MS.gene80438:CDS
CAATCAAAGTATTACTTGTG+GGG 0.575768 6.3:+39150629 MS.gene80438:CDS
TGAATCTGTTGACTCACTAT+CGG 0.577030 6.3:-39149613 None:intergenic
TTGCCGCATCGAACACCCAA+AGG 0.577108 6.3:+39146089 MS.gene80438:CDS
TGTAGTTGAACCTCAAGTAT+CGG 0.578070 6.3:+39148482 MS.gene80438:CDS
TGAAGTTGAACCTCAAGTAT+CGG 0.581112 6.3:+39147495 MS.gene80438:CDS
AGAGGCATTTACCACGGCAA+AGG 0.581163 6.3:+39145997 MS.gene80438:CDS
GCTGATGTGTGATGTGATGA+GGG 0.583001 6.3:-39145837 None:intergenic
AGTACTGAAACTGAAGCTGC+AGG 0.583643 6.3:+39147553 MS.gene80438:CDS
TCGCCACATGTAAGACAGAC+AGG 0.584201 6.3:-39148766 None:intergenic
AAGTCTTCCGGTGTTTGTAG+TGG 0.584785 6.3:-39146260 None:intergenic
ACTGCAGCTTCCGATACTTG+AGG 0.586372 6.3:-39147505 None:intergenic
ACTGCAGCTTCCGATACTTG+AGG 0.586372 6.3:-39148492 None:intergenic
GTTTCAGTACTAACCTCCGC+AGG 0.587845 6.3:-39147541 None:intergenic
GTTTCAGTACTAACCTCCGC+AGG 0.587845 6.3:-39148528 None:intergenic
CCAGCATCATGTATCTTGGA+TGG 0.588280 6.3:-39150674 None:intergenic
TGCAGGCGAAAGTTCTCAGT+CGG 0.588783 6.3:+39147570 MS.gene80438:CDS
CCATCCAAGATACATGATGC+TGG 0.590774 6.3:+39150674 MS.gene80438:CDS
ATACATGAAGATGGATAATG+GGG 0.590780 6.3:+39146937 MS.gene80438:CDS
ATACATGAAGATGGATAATG+GGG 0.590780 6.3:+39148026 MS.gene80438:CDS
TCGAATGTTATTAAAATCAA+CGG 0.593725 6.3:+39147756 MS.gene80438:CDS
TTTGAACTTCTAACTGACCA+TGG 0.593970 6.3:+39147463 MS.gene80438:CDS
TGTAGGCTTTGAAGAGACAT+TGG 0.594230 6.3:+39148789 MS.gene80438:CDS
TTCTGGCTGAAAGTTCTACA+AGG 0.597944 6.3:+39146732 MS.gene80438:CDS
CGGAAACTTATGGATAACAC+TGG 0.598529 6.3:+39146863 MS.gene80438:CDS
CGGAAACTTATGGATAACAC+TGG 0.598529 6.3:+39147952 MS.gene80438:CDS
CGTGATATTATGGGAGCCGT+AGG 0.599034 6.3:+39146908 MS.gene80438:CDS
AGCTCTCATGGCAAGATCAG+TGG 0.599515 6.3:-39150461 None:intergenic
TGATCTTGCCATGAGAGCTA+GGG 0.600105 6.3:+39150465 MS.gene80438:CDS
TAGCATTCCGGCCTTTGCCG+TGG 0.605064 6.3:-39146008 None:intergenic
GACATGCTAAAGTGGACAAG+TGG 0.607073 6.3:-39150028 None:intergenic
AGCATGTCCTAAAGTTCTCG+AGG 0.609952 6.3:+39150043 MS.gene80438:CDS
TCCCGACTGAAATCATCGAA+TGG 0.611736 6.3:-39145753 None:intergenic
AAAACAACCATCAGGGTGTG+TGG 0.612294 6.3:+39147180 MS.gene80438:CDS
AAAACAACCATCAGGGTGTG+TGG 0.612294 6.3:+39148131 MS.gene80438:CDS
CGAAACTAGATCCTTCAACA+GGG 0.613165 6.3:-39147225 None:intergenic
CAAAACTAGATCCTTCAACA+GGG 0.613617 6.3:-39148176 None:intergenic
CTATAGCTCCAGTACAAAGT+CGG 0.614568 6.3:+39147650 MS.gene80438:CDS
GGTGAAGCCACACACCCTGA+TGG 0.621745 6.3:-39147187 None:intergenic
GGTGAAGCCACACACCCTGA+TGG 0.621745 6.3:-39148138 None:intergenic
CGTTGTACTGGGGCTAACGC+AGG 0.623248 6.3:-39146326 None:intergenic
AGATTCTAAATTGAAATCTG+GGG 0.623391 6.3:+39146640 MS.gene80438:CDS
AAATCTCTAGTCCAAAGACC+TGG 0.624726 6.3:+39147016 MS.gene80438:CDS
AAATCTCTAGTCCAAAGACC+TGG 0.624726 6.3:+39148105 MS.gene80438:CDS
AAATCTCCAGTCCAAAGACC+AGG 0.627329 6.3:+39147154 MS.gene80438:CDS
AGCTCCTAGATTCAGCAACA+AGG 0.627680 6.3:+39146604 MS.gene80438:CDS
CTTGATATTAGGGGAGCCGT+AGG 0.627856 6.3:+39147997 MS.gene80438:CDS
ACCTGACTTAGCATTGACCT+CGG 0.628462 6.3:-39147056 None:intergenic
GCGCTTACCACTACAAACAC+CGG 0.629204 6.3:+39146253 MS.gene80438:CDS
TTTGAACTCGTAACTGAACG+TGG 0.635451 6.3:+39148450 MS.gene80438:CDS
AAACCTTTGGGTGTTCGATG+CGG 0.635469 6.3:-39146092 None:intergenic
TGGGGATAACACTAGTCCAA+AGG 0.638001 6.3:+39146760 MS.gene80438:CDS
GTCACCGTGTCAAAACCGCT+GGG 0.640391 6.3:+39147613 MS.gene80438:CDS
CAACTTAGTTGTCTCTGACA+CGG 0.640785 6.3:-39148604 None:intergenic
AGTGGAGATTGATGCTCCTG+CGG 0.644714 6.3:+39147525 MS.gene80438:CDS
AGTGGAGATTGATGCTCCTG+CGG 0.644714 6.3:+39148512 MS.gene80438:CDS
ATTAAAATCATCAAAACCCG+AGG 0.645189 6.3:+39147039 MS.gene80438:CDS
AGGAAACTTGGGGATAACAC+TGG 0.648034 6.3:+39147841 MS.gene80438:CDS
AAGTTCTACAAGGAAACTTG+GGG 0.652845 6.3:+39146742 MS.gene80438:CDS
TCACTGTCTCAAGAGTCTAA+AGG 0.653932 6.3:+39147274 MS.gene80438:CDS
AGAACTACATGAGCAATCAA+CGG 0.655046 6.3:+39146451 MS.gene80438:CDS
GGAGATTGATGCTCCTGCGG+AGG 0.657246 6.3:+39147528 MS.gene80438:CDS
GGAGATTGATGCTCCTGCGG+AGG 0.657246 6.3:+39148515 MS.gene80438:CDS
ACACTGTCTCAAGAGTCTAA+AGG 0.658655 6.3:+39148225 MS.gene80438:CDS
AAGTTCTACAAGGAAACTTG+GGG 0.659666 6.3:+39147831 MS.gene80438:CDS
AACACTGGTCCAATGGATCG+TGG 0.660832 6.3:+39147856 MS.gene80438:CDS
GTTGGTCCCAGCGTTTGATG+CGG 0.661463 6.3:-39146299 None:intergenic
CAACTTCAGTATGTAGACCA+TGG 0.662587 6.3:-39147480 None:intergenic
ATACCTGTCTGTCTTACATG+TGG 0.664257 6.3:+39148763 MS.gene80438:CDS
TCTGGTGGTGCAGATGCAAG+TGG 0.665708 6.3:-39147424 None:intergenic
TCTGGTGGTGCAGATGCAAG+TGG 0.665708 6.3:-39148411 None:intergenic
GGTTCCAAGCTTGATATTAG+GGG 0.669303 6.3:+39147988 MS.gene80438:CDS
TTTAGACTCTTGAGACAGTG+TGG 0.676181 6.3:-39148223 None:intergenic
CTATTTCTGATCCAATCTGG+AGG 0.679126 6.3:+39149838 MS.gene80438:CDS
CAGGATTAAAACAACCATCA+GGG 0.680238 6.3:+39147173 MS.gene80438:CDS
CTGGATTAAAACAACCATCA+GGG 0.680238 6.3:+39148124 MS.gene80438:CDS
AACACTAGTCCAAAGGATCG+CGG 0.680645 6.3:+39146767 MS.gene80438:CDS
TGACTGCCGACGTTGTACTG+GGG 0.680787 6.3:-39146336 None:intergenic
TCTGTAAGAGGCATTTACCA+CGG 0.681281 6.3:+39145991 MS.gene80438:CDS
TCAGCAAAACCCATATCGTG+AGG 0.682222 6.3:-39145807 None:intergenic
TGTTAGTCATAGAACCAGCA+GGG 0.683241 6.3:-39148335 None:intergenic
TTTAGACTCTTGAGACAGTG+AGG 0.691124 6.3:-39147272 None:intergenic
AGTGAAATCATCAAAACCCG+AGG 0.692665 6.3:+39148059 MS.gene80438:CDS
GCAGGAATAGTTGGTCCCAG+CGG 0.703426 6.3:-39147628 None:intergenic
CGTTAGCCCCAGTACAACGT+CGG 0.703865 6.3:+39146330 MS.gene80438:CDS
AATCAGTTGGAATATCAAAG+GGG 0.721881 6.3:+39145876 MS.gene80438:CDS
TGTCATATTAGAGCCTGTTG+AGG 0.726916 6.3:-39147323 None:intergenic
CATGATGCTGATGCATCTGG+TGG 0.736349 6.3:-39147439 None:intergenic
AGGGCCTATCATCAGCATAG+CGG 0.744214 6.3:-39145902 None:intergenic
CATGACGCTGATGCATCTGG+TGG 0.762659 6.3:-39148426 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATCTTAAGAAAAATATTA+TGG - chr6.3:39149425-39149444 None:intergenic 15.0%
!! AAATTAAAAGAAGAGAACAA+TGG - chr6.3:39149346-39149365 None:intergenic 20.0%
!! ATCTTATATATTAGTTACGA+TGG + chr6.3:39149054-39149073 MS.gene80438:intron 20.0%
!! TAGATTCTAAATTGAAATCT+GGG + chr6.3:39146639-39146658 MS.gene80438:CDS 20.0%
!! TCGAATGTTATTAAAATCAA+CGG + chr6.3:39147756-39147775 MS.gene80438:CDS 20.0%
!! TTAATTCAGTGATTCATAAA+AGG - chr6.3:39148723-39148742 None:intergenic 20.0%
!! TTCAATCATAAAACCATATT+TGG - chr6.3:39150287-39150306 None:intergenic 20.0%
!!! AATATTATTTGAAACTTCCT+AGG - chr6.3:39148658-39148677 None:intergenic 20.0%
!!! AATTCTGAAGACATTAATAA+GGG + chr6.3:39149204-39149223 MS.gene80438:intron 20.0%
!!! ACATGCTTTTAAATTTCTAT+TGG + chr6.3:39149170-39149189 MS.gene80438:intron 20.0%
!!! ATATTATTTGAAACTTCCTA+GGG - chr6.3:39148657-39148676 None:intergenic 20.0%
!!! TTTGATTTAATCATTTTGCA+GGG + chr6.3:39150603-39150622 MS.gene80438:intron 20.0%
!!! TTTTGATTTAATCATTTTGC+AGG + chr6.3:39150602-39150621 MS.gene80438:intron 20.0%
! AAAATATTATGGCAAAACAC+AGG - chr6.3:39149414-39149433 None:intergenic 25.0%
! AAATACATGAAGATGGATAA+TGG + chr6.3:39146935-39146954 MS.gene80438:CDS 25.0%
! AATACATGAAGATGGATAAT+GGG + chr6.3:39146936-39146955 MS.gene80438:CDS 25.0%
! AGACATTAATAAGGGTAATA+TGG + chr6.3:39149212-39149231 MS.gene80438:intron 25.0%
! AGATTCTAAATTGAAATCTG+GGG + chr6.3:39146640-39146659 MS.gene80438:CDS 25.0%
! GTAGATTCTAAATTGAAATC+TGG + chr6.3:39146638-39146657 MS.gene80438:CDS 25.0%
! TCAGAAGTTTCAAAATATTG+TGG + chr6.3:39148257-39148276 MS.gene80438:CDS 25.0%
! TCATTTATGACTACTACATA+TGG - chr6.3:39149591-39149610 None:intergenic 25.0%
! TGTTTCGAAGAACATAATAA+TGG + chr6.3:39146404-39146423 MS.gene80438:CDS 25.0%
!! AATTTAAAAGCATGTCCATA+TGG - chr6.3:39149165-39149184 None:intergenic 25.0%
!! AGCTTTTCCTAAATTAAGAT+GGG - chr6.3:39149026-39149045 None:intergenic 25.0%
!! AGTTGAATTTTGTGGATAAT+AGG + chr6.3:39149949-39149968 MS.gene80438:intron 25.0%
!! ATGTTAATGTCTTTTCGATA+GGG + chr6.3:39150399-39150418 MS.gene80438:intron 25.0%
!! GAATTCTGAAGACATTAATA+AGG + chr6.3:39149203-39149222 MS.gene80438:intron 25.0%
!! GTTGAATTTTGTGGATAATA+GGG + chr6.3:39149950-39149969 MS.gene80438:intron 25.0%
!! TCAATCAAAGTATTACTTGT+GGG + chr6.3:39150628-39150647 MS.gene80438:CDS 25.0%
!! TGACTTCTTTTACATTCTTT+TGG + chr6.3:39149881-39149900 MS.gene80438:intron 25.0%
!! TTCAATCAAAGTATTACTTG+TGG + chr6.3:39150627-39150646 MS.gene80438:CDS 25.0%
!! TTGAATTTTGTGGATAATAG+GGG + chr6.3:39149951-39149970 MS.gene80438:intron 25.0%
!! TTTTTACGGATGAAGTTATT+TGG + chr6.3:39149547-39149566 MS.gene80438:CDS 25.0%
!!! AACATTCTTGTGCTTTAAAA+TGG - chr6.3:39146825-39146844 None:intergenic 25.0%
!!! ACATTCTTGTGCTTTAAAAT+GGG - chr6.3:39146824-39146843 None:intergenic 25.0%
!!! CACATTCTAAAATACCTTTT+TGG + chr6.3:39149492-39149511 MS.gene80438:intron 25.0%
!!! GGTTTTATGATTGAACATTA+TGG + chr6.3:39150292-39150311 MS.gene80438:intron 25.0%
!!! TGTAGCGTTTCAATATTTTT+TGG - chr6.3:39148961-39148980 None:intergenic 25.0%
!!! TTTTCAGGTATTGTTTAGAT+GGG + chr6.3:39149517-39149536 MS.gene80438:intron 25.0%
AAAGTTCTACAAGGAAACTT+GGG + chr6.3:39146741-39146760 MS.gene80438:CDS 30.0%
AAATCATTTCATCAACTAGC+TGG - chr6.3:39150441-39150460 None:intergenic 30.0%
AATCAGTTGGAATATCAAAG+GGG + chr6.3:39145876-39145895 MS.gene80438:CDS 30.0%
ACAATCAGTTGGAATATCAA+AGG + chr6.3:39145874-39145893 MS.gene80438:CDS 30.0%
AGACTATTTCCAAATTCTTC+TGG + chr6.3:39146503-39146522 MS.gene80438:CDS 30.0%
AGGAGATAAATACATGAAGA+TGG + chr6.3:39146928-39146947 MS.gene80438:CDS 30.0%
ATACATGAAGATGGATAATG+GGG + chr6.3:39146937-39146956 MS.gene80438:CDS 30.0%
ATGATATTAGTTACGATGGA+TGG + chr6.3:39149077-39149096 MS.gene80438:intron 30.0%
ATGCAATGCAAAATAGTAGA+TGG - chr6.3:39148872-39148891 None:intergenic 30.0%
ATGGATGATATTAGTTACGA+TGG + chr6.3:39149073-39149092 MS.gene80438:intron 30.0%
ATTAAAATCATCAAAACCCG+AGG + chr6.3:39147039-39147058 MS.gene80438:CDS 30.0%
ATTTCTTTCCTCAGAATGAA+AGG + chr6.3:39150174-39150193 MS.gene80438:CDS 30.0%
CAATCAGTTGGAATATCAAA+GGG + chr6.3:39145875-39145894 MS.gene80438:CDS 30.0%
CATCTAAACAATACCTGAAA+AGG - chr6.3:39149518-39149537 None:intergenic 30.0%
CTATCGAAAAGACATTAACA+TGG - chr6.3:39150400-39150419 None:intergenic 30.0%
CTTCATGTATTTATCTCCTA+CGG - chr6.3:39146927-39146946 None:intergenic 30.0%
GATTATTCGTTCCAAATTTC+CGG - chr6.3:39150139-39150158 None:intergenic 30.0%
TCGCAGAATCTAAGAAAAAT+GGG + chr6.3:39146555-39146574 MS.gene80438:CDS 30.0%
TGTTTGGAAGGACATAATAA+TGG + chr6.3:39147724-39147743 MS.gene80438:CDS 30.0%
TTACGATGGATGGTAAATTA+TGG + chr6.3:39149087-39149106 MS.gene80438:intron 30.0%
TTTGCACAAACTTAAGAACA+TGG + chr6.3:39150203-39150222 MS.gene80438:intron 30.0%
! AAAGTCTTATCTCAATAAGC+AGG - chr6.3:39150342-39150361 None:intergenic 30.0%
! AACTCACTCTTGTATTTTCT+TGG - chr6.3:39150532-39150551 None:intergenic 30.0%
! AAGTCTTATCTCAATAAGCA+GGG - chr6.3:39150341-39150360 None:intergenic 30.0%
! ACTCACTCTTGTATTTTCTT+GGG - chr6.3:39150531-39150550 None:intergenic 30.0%
! ACTTTCATAGGTTGAAATAC+CGG - chr6.3:39146536-39146555 None:intergenic 30.0%
! AGAGTATTTCCAAATTCTTC+TGG + chr6.3:39147808-39147827 MS.gene80438:CDS 30.0%
! CAATCAAAGTATTACTTGTG+GGG + chr6.3:39150629-39150648 MS.gene80438:CDS 30.0%
! CAGCTTTTCCTAAATTAAGA+TGG - chr6.3:39149027-39149046 None:intergenic 30.0%
! CATGTTAATGTCTTTTCGAT+AGG + chr6.3:39150398-39150417 MS.gene80438:intron 30.0%
! CATTCTGAGGAAAGAAATAA+AGG - chr6.3:39150172-39150191 None:intergenic 30.0%
! CTTCTCAAAATCTGTGTTTT+TGG + chr6.3:39148688-39148707 MS.gene80438:intron 30.0%
! CTTTTATCAGCAAAACCTTT+GGG - chr6.3:39146107-39146126 None:intergenic 30.0%
! GCTTTTCCTAAATTAAGATG+GGG - chr6.3:39149025-39149044 None:intergenic 30.0%
! TAATCGAAGTTCAAGTTCAA+TGG - chr6.3:39145780-39145799 None:intergenic 30.0%
! TCTTTTATCAGCAAAACCTT+TGG - chr6.3:39146108-39146127 None:intergenic 30.0%
! TTCAATTTAGAATCTACAGC+TGG - chr6.3:39146635-39146654 None:intergenic 30.0%
!! AAATTCTTCTGGAATGAATC+CGG + chr6.3:39146514-39146533 MS.gene80438:CDS 30.0%
!! ATGATTTTAATCCAGGTCTT+TGG - chr6.3:39147030-39147049 None:intergenic 30.0%
!! GAGATTACTGATTCAGAAAA+AGG + chr6.3:39149663-39149682 MS.gene80438:CDS 30.0%
!! GGTTTTGATGATTTTAATCC+AGG - chr6.3:39147037-39147056 None:intergenic 30.0%
!! TTGTCTGAAGTTGAATTTTG+TGG + chr6.3:39149941-39149960 MS.gene80438:intron 30.0%
!!! ATTTTTTGGAGTCACATTTC+CGG - chr6.3:39148947-39148966 None:intergenic 30.0%
!!! CTTTTCAGGTATTGTTTAGA+TGG + chr6.3:39149516-39149535 MS.gene80438:intron 30.0%
!!! TATTTACCCTGAACCTTTTT+TGG + chr6.3:39148994-39149013 MS.gene80438:intron 30.0%
!!! TGAAGTTATTTGGTTTTGTG+AGG + chr6.3:39149557-39149576 MS.gene80438:CDS 30.0%
!!! TGGTAAATTATGGTTTTAGC+AGG + chr6.3:39149097-39149116 MS.gene80438:intron 30.0%
AAAGCTTCCAACTCCATAAA+AGG - chr6.3:39149456-39149475 None:intergenic 35.0%
AAAGTATGATCAGCCACAAT+TGG + chr6.3:39148281-39148300 MS.gene80438:CDS 35.0%
AAGGTCTAAACGGAAACTTA+TGG + chr6.3:39146853-39146872 MS.gene80438:CDS 35.0%
AAGTTCTACAAGGAAACTTG+GGG + chr6.3:39146742-39146761 MS.gene80438:CDS 35.0%
AATACCTGAAAAGGCCAAAA+AGG - chr6.3:39149509-39149528 None:intergenic 35.0%
ACATTCTTCTGCTTGAAACT+AGG - chr6.3:39146713-39146732 None:intergenic 35.0%
ACGCTTAAAAGATCGAAAGT+TGG + chr6.3:39145962-39145981 MS.gene80438:CDS 35.0%
ACTTCAGACAATGATTTCAC+AGG - chr6.3:39149932-39149951 None:intergenic 35.0%
ACTTCATCCGTAAAAATGAC+AGG - chr6.3:39149543-39149562 None:intergenic 35.0%
AGAACTACATGAGCAATCAA+CGG + chr6.3:39146451-39146470 MS.gene80438:CDS 35.0%
ATGGTTCCAAGCTTGATATT+AGG + chr6.3:39147986-39148005 MS.gene80438:CDS 35.0%
ATTGGATCAGAAATAGGTTG+TGG - chr6.3:39149834-39149853 None:intergenic 35.0%
CAAAACCCTATTCTGATAAG+AGG + chr6.3:39146231-39146250 MS.gene80438:CDS 35.0%
CAAAACTAGATCCTTCAACA+GGG - chr6.3:39148179-39148198 None:intergenic 35.0%
CAAATTTCTTACCTCCAGAT+TGG - chr6.3:39149852-39149871 None:intergenic 35.0%
CAGAAAATGAGAAAAACCTG+AGG - chr6.3:39148630-39148649 None:intergenic 35.0%
CAGAATTCACAACTTCTGTT+TGG - chr6.3:39147375-39147394 None:intergenic 35.0%
CAGGATTAAAACAACCATCA+GGG + chr6.3:39147173-39147192 MS.gene80438:CDS 35.0%
CTCTTATAGAGTAGATGCAT+TGG - chr6.3:39149305-39149324 None:intergenic 35.0%
CTCTTATCAACATAGCATTC+CGG - chr6.3:39146023-39146042 None:intergenic 35.0%
CTGGATTAAAACAACCATCA+GGG + chr6.3:39148124-39148143 MS.gene80438:CDS 35.0%
GAAAGTTCTACAAGGAAACT+TGG + chr6.3:39146740-39146759 MS.gene80438:CDS 35.0%
GAAGTTCTACAAGGAAACTT+GGG + chr6.3:39147830-39147849 MS.gene80438:CDS 35.0%
GACTGAACTTGATTTAGCAT+TGG - chr6.3:39147134-39147153 None:intergenic 35.0%
GGAACGAATAATCTAAGCAT+TGG + chr6.3:39150146-39150165 MS.gene80438:CDS 35.0%
GGATTCATTCCAGAAGAATT+TGG - chr6.3:39146515-39146534 None:intergenic 35.0%
GTAGAACTTCCAGAAGAATT+TGG - chr6.3:39147820-39147839 None:intergenic 35.0%
GTCGCAGAATCTAAGAAAAA+TGG + chr6.3:39146554-39146573 MS.gene80438:CDS 35.0%
GTTCAGTACTCATCCAAATA+TGG + chr6.3:39150271-39150290 MS.gene80438:intron 35.0%
TAAGATGCATCACAACTGTT+TGG + chr6.3:39147708-39147727 MS.gene80438:CDS 35.0%
TACCAAATTCCTCACGATAT+GGG + chr6.3:39145798-39145817 MS.gene80438:CDS 35.0%
TCAAAACTAGATCCTTCAAC+AGG - chr6.3:39148180-39148199 None:intergenic 35.0%
TGAAGTTGAACCTCAAGTAT+CGG + chr6.3:39147495-39147514 MS.gene80438:CDS 35.0%
TGATTCAAAGAGAAGCTGTT+TGG + chr6.3:39150102-39150121 MS.gene80438:CDS 35.0%
TGGTTCCAAGCTTGATATTA+GGG + chr6.3:39147987-39148006 MS.gene80438:CDS 35.0%
TGTAGTTGAACCTCAAGTAT+CGG + chr6.3:39148482-39148501 MS.gene80438:CDS 35.0%
TGTTCTTCGAAACATTTGTC+AGG - chr6.3:39146398-39146417 None:intergenic 35.0%
TTACCAAATTCCTCACGATA+TGG + chr6.3:39145797-39145816 MS.gene80438:CDS 35.0%
TTAGATTCTGCGACTTTCAT+AGG - chr6.3:39146548-39146567 None:intergenic 35.0%
TTTCAAGCAGAAGAATGTTC+TGG + chr6.3:39146715-39146734 MS.gene80438:CDS 35.0%
TTTGAACTTCTAACTGACCA+TGG + chr6.3:39147463-39147482 MS.gene80438:CDS 35.0%
! ATATGGGTTTTGCTGATGAT+TGG + chr6.3:39145814-39145833 MS.gene80438:CDS 35.0%
! ATTCTTCTGGAAGTTCTACA+AGG + chr6.3:39147821-39147840 MS.gene80438:CDS 35.0%
! CATCTATTTTCCTTGCCATA+TGG + chr6.3:39149147-39149166 MS.gene80438:intron 35.0%
! CTCTTATCAGAATAGGGTTT+TGG - chr6.3:39146233-39146252 None:intergenic 35.0%
! GATGAAGCTTTTGCCTTTTA+TGG + chr6.3:39149440-39149459 MS.gene80438:intron 35.0%
! TGTGAATTCTGATTTTGCAG+CGG + chr6.3:39147384-39147403 MS.gene80438:CDS 35.0%
!! AACCTATTTCTGATCCAATC+TGG + chr6.3:39149835-39149854 MS.gene80438:CDS 35.0%
!! AACTTTAGGACATGCTAAAG+TGG - chr6.3:39150039-39150058 None:intergenic 35.0%
!! AATACCTTTTTGGCCTTTTC+AGG + chr6.3:39149502-39149521 MS.gene80438:intron 35.0%
!! ATGTGGTAAGCACTTGTTAT+CGG - chr6.3:39146204-39146223 None:intergenic 35.0%
!! TGAATCTGTTGACTCACTAT+CGG - chr6.3:39149616-39149635 None:intergenic 35.0%
!!! GTTGTTTTAATCCAGGTCTT+TGG - chr6.3:39148119-39148138 None:intergenic 35.0%
!!! GTTGTTTTAATCCTGGTCTT+TGG - chr6.3:39147168-39147187 None:intergenic 35.0%
AAACATGATGCTGATGCATC+TGG - chr6.3:39147445-39147464 None:intergenic 40.0%
AAACCTCACCTTTCATTCTG+AGG - chr6.3:39150185-39150204 None:intergenic 40.0%
AAATCTCCAGTCGAAAGATC+TGG + chr6.3:39147085-39147104 MS.gene80438:CDS 40.0%
AAATCTCTAGTCCAAAGACC+TGG + chr6.3:39147016-39147035 MS.gene80438:CDS 40.0%
AACCCATATCGTGAGGAATT+TGG - chr6.3:39145803-39145822 None:intergenic 40.0%
AAGCGCCTCTTATCAGAATA+GGG - chr6.3:39146239-39146258 None:intergenic 40.0%
AATACAGTCTCGACATGTCT+CGG + chr6.3:39148200-39148219 MS.gene80438:CDS 40.0%
ACAAGAATGTTCCAGCTGAA+AGG + chr6.3:39146834-39146853 MS.gene80438:CDS 40.0%
ACACTGTCTCAAGAGTCTAA+AGG + chr6.3:39148225-39148244 MS.gene80438:CDS 40.0%
ACGGAACTTAGTGTTCCAAA+TGG + chr6.3:39147775-39147794 MS.gene80438:CDS 40.0%
ACTCTACTATCTCGTCCATT+TGG - chr6.3:39147793-39147812 None:intergenic 40.0%
ACTTCCTTGTTGCTGAATCT+AGG - chr6.3:39146611-39146630 None:intergenic 40.0%
AGTAGATGCATTGGAAACAC+AGG - chr6.3:39149296-39149315 None:intergenic 40.0%
AGTCTACTATCTCGTCCATT+TGG - chr6.3:39146488-39146507 None:intergenic 40.0%
AGTGAAATCATCAAAACCCG+AGG + chr6.3:39148059-39148078 MS.gene80438:CDS 40.0%
ATACCTGTCTGTCTTACATG+TGG + chr6.3:39148763-39148782 MS.gene80438:CDS 40.0%
ATGCATCACAACTGTTTGGA+AGG + chr6.3:39147712-39147731 MS.gene80438:CDS 40.0%
ATGGATAACACTGGTGCAAA+GGG + chr6.3:39146872-39146891 MS.gene80438:CDS 40.0%
ATGTCTGCTTCAAGCACATT+AGG - chr6.3:39150083-39150102 None:intergenic 40.0%
CAACTTAGTTGTCTCTGACA+CGG - chr6.3:39148607-39148626 None:intergenic 40.0%
CAACTTCAGTATGTAGACCA+TGG - chr6.3:39147483-39147502 None:intergenic 40.0%
CAATTGGTGAATGCTTCAAC+AGG + chr6.3:39148297-39148316 MS.gene80438:CDS 40.0%
CACTTATCAGCAAAGTCTTC+CGG - chr6.3:39146275-39146294 None:intergenic 40.0%
CAGAAGACTTTGCTGATAGA+AGG + chr6.3:39146147-39146166 MS.gene80438:CDS 40.0%
CCAAATTTCCGGAAACTTTC+TGG - chr6.3:39150128-39150147 None:intergenic 40.0%
CCAATGGATCGTGGTTTAAA+GGG + chr6.3:39147865-39147884 MS.gene80438:CDS 40.0%
CCAGAAAGTTTCCGGAAATT+TGG + chr6.3:39150125-39150144 MS.gene80438:CDS 40.0%
CCAGGATTAAAACAACCATC+AGG + chr6.3:39147172-39147191 MS.gene80438:CDS 40.0%
CCTGGATTAAAACAACCATC+AGG + chr6.3:39148123-39148142 MS.gene80438:CDS 40.0%
CGAAACTAGATCCTTCAACA+GGG - chr6.3:39147228-39147247 None:intergenic 40.0%
CGGAAACTTATGGATAACAC+TGG + chr6.3:39146863-39146882 MS.gene80438:CDS 40.0%
CTATAGCTCCAGTACAAAGT+CGG + chr6.3:39147650-39147669 MS.gene80438:CDS 40.0%
CTCCAGATTGGATCAGAAAT+AGG - chr6.3:39149840-39149859 None:intergenic 40.0%
CTTCTATCAGCAAAGTCTTC+TGG - chr6.3:39146149-39146168 None:intergenic 40.0%
CTTTGCTGATGACAATCAGT+TGG + chr6.3:39145863-39145882 MS.gene80438:CDS 40.0%
GACTGAACCTGACTTATCAT+TGG - chr6.3:39146996-39147015 None:intergenic 40.0%
GGAAGTTCTACAAGGAAACT+TGG + chr6.3:39147829-39147848 MS.gene80438:CDS 40.0%
GGTTCCAAGCGTGATATTAT+GGG + chr6.3:39146899-39146918 MS.gene80438:CDS 40.0%
GGTTCCAAGCTTGATATTAG+GGG + chr6.3:39147988-39148007 MS.gene80438:CDS 40.0%
TAAGCGCCTCTTATCAGAAT+AGG - chr6.3:39146240-39146259 None:intergenic 40.0%
TAGAATGTGAAACACTGCGA+TGG - chr6.3:39149481-39149500 None:intergenic 40.0%
TATGGATAACACTGGTGCAA+AGG + chr6.3:39146871-39146890 MS.gene80438:CDS 40.0%
TCACTGTCTCAAGAGTCTAA+AGG + chr6.3:39147274-39147293 MS.gene80438:CDS 40.0%
TCCAATGGATCGTGGTTTAA+AGG + chr6.3:39147864-39147883 MS.gene80438:CDS 40.0%
TCGAAACTAGATCCTTCAAC+AGG - chr6.3:39147229-39147248 None:intergenic 40.0%
TCTAATATGACACACACTGC+TGG + chr6.3:39147334-39147353 MS.gene80438:CDS 40.0%
TGAACCAGCATCATGTATCT+TGG - chr6.3:39150681-39150700 None:intergenic 40.0%
TGCAGACGAAAGTTCTCATT+CGG + chr6.3:39148557-39148576 MS.gene80438:CDS 40.0%
TGCCATTCGATGATTTCAGT+CGG + chr6.3:39145751-39145770 MS.gene80438:CDS 40.0%
TGCTAAGGATCTCGATTTCA+AGG + chr6.3:39146673-39146692 MS.gene80438:CDS 40.0%
TGGTTCCAAGCGTGATATTA+TGG + chr6.3:39146898-39146917 MS.gene80438:CDS 40.0%
TGTCATATTAGAGCCTGTTG+AGG - chr6.3:39147326-39147345 None:intergenic 40.0%
TGTTAGTCATAGAACCAGCA+GGG - chr6.3:39147351-39147370 None:intergenic 40.0%
TTCCAGCTGAAAGGTCTAAA+CGG + chr6.3:39146843-39146862 MS.gene80438:CDS 40.0%
TTGAAATCTGGGGATTATGC+TGG + chr6.3:39146650-39146669 MS.gene80438:CDS 40.0%
TTGTTAGTCATAGAACCAGC+AGG - chr6.3:39147352-39147371 None:intergenic 40.0%
TTGTTATCGGCATAGTCTTC+CGG - chr6.3:39146191-39146210 None:intergenic 40.0%
TTTACTCCAGATCTTTCGAC+TGG - chr6.3:39147094-39147113 None:intergenic 40.0%
TTTAGACTCTTGAGACAGTG+AGG - chr6.3:39147275-39147294 None:intergenic 40.0%
TTTAGACTCTTGAGACAGTG+TGG - chr6.3:39147275-39147294 None:intergenic 40.0%
TTTCCGGATAGAAACAGAAG+TGG - chr6.3:39148931-39148950 None:intergenic 40.0%
TTTCCTCAGAATGAAAGGTG+AGG + chr6.3:39150179-39150198 MS.gene80438:intron 40.0%
TTTGAACTCGTAACTGAACG+TGG + chr6.3:39148450-39148469 MS.gene80438:CDS 40.0%
TTTGTCTCCTCGAGAACTTT+AGG - chr6.3:39150053-39150072 None:intergenic 40.0%
! AAAAGCATGTCCATATGGCA+AGG - chr6.3:39149160-39149179 None:intergenic 40.0%
! ACCTGACTTATCATTGGTCT+CGG - chr6.3:39146990-39147009 None:intergenic 40.0%
! AGCTTTGGCAAAATCATCAC+TGG + chr6.3:39149996-39150015 MS.gene80438:CDS 40.0%
! CACGACACACATTTTCTACA+GGG - chr6.3:39146583-39146602 None:intergenic 40.0%
! CGGAATGCTATGTTGATAAG+AGG + chr6.3:39146021-39146040 MS.gene80438:CDS 40.0%
! CTGGTTCTCAACAAAAGCTT+TGG + chr6.3:39149981-39150000 MS.gene80438:CDS 40.0%
! GCTTTTGCCTTTTATGGAGT+TGG + chr6.3:39149446-39149465 MS.gene80438:intron 40.0%
! GTTGAAGCATTCACCAATTG+TGG - chr6.3:39148297-39148316 None:intergenic 40.0%
! TCACGACACACATTTTCTAC+AGG - chr6.3:39146584-39146603 None:intergenic 40.0%
! TCTCATTTTCTGACTTCCCT+AGG + chr6.3:39148638-39148657 MS.gene80438:intron 40.0%
! TTCTGGCTGAAAGTTCTACA+AGG + chr6.3:39146732-39146751 MS.gene80438:CDS 40.0%
! TTTAATCCTGGTCTTTGGAC+TGG - chr6.3:39147163-39147182 None:intergenic 40.0%
! TTTATCAACCCTAGCTCTCA+TGG - chr6.3:39150476-39150495 None:intergenic 40.0%
!! CAACCACTTCTGTTTCTATC+CGG + chr6.3:39148925-39148944 MS.gene80438:intron 40.0%
!! CTATTTCTGATCCAATCTGG+AGG + chr6.3:39149838-39149857 MS.gene80438:CDS 40.0%
!! CTCGGGTTTTGATGATTTCA+CGG - chr6.3:39146972-39146991 None:intergenic 40.0%
!! CTTGATTTAGCATTGGCATC+AGG - chr6.3:39147127-39147146 None:intergenic 40.0%
!! TCGGGTTTTGATGATTTCAC+GGG - chr6.3:39146971-39146990 None:intergenic 40.0%
!! TCGGGTTTTGATGATTTCAC+TGG - chr6.3:39146971-39146990 None:intergenic 40.0%
!! TCTGTAAGAGGCATTTACCA+CGG + chr6.3:39145991-39146010 MS.gene80438:CDS 40.0%
!! TGTAGGCTTTGAAGAGACAT+TGG + chr6.3:39148789-39148808 MS.gene80438:CDS 40.0%
!! TTTCTTGGGAGCATTGTAGA+AGG - chr6.3:39150517-39150536 None:intergenic 40.0%
!!! ACAGGGATTGGTGTCATTTT+AGG - chr6.3:39147211-39147230 None:intergenic 40.0%
!!! AGATGGGCCTGTCATTTTTA+CGG + chr6.3:39149533-39149552 MS.gene80438:CDS 40.0%
!!! CCTGATGGTTGTTTTAATCC+AGG - chr6.3:39147175-39147194 None:intergenic 40.0%
!!! CCTGATGGTTGTTTTAATCC+TGG - chr6.3:39147175-39147194 None:intergenic 40.0%
AAAACAACCATCAGGGTGTG+TGG + chr6.3:39147180-39147199 MS.gene80438:CDS 45.0%
AAACATGACGCTGATGCATC+TGG - chr6.3:39148432-39148451 None:intergenic 45.0%
AAACCTTTGGGTGTTCGATG+CGG - chr6.3:39146095-39146114 None:intergenic 45.0%
AAATCTCCAGTCCAAAGACC+AGG + chr6.3:39147154-39147173 MS.gene80438:CDS 45.0%
AACACTAGTCCAAAGGATCG+CGG + chr6.3:39146767-39146786 MS.gene80438:CDS 45.0%
AACACTGGTGCAAAGGATGA+TGG + chr6.3:39146878-39146897 MS.gene80438:CDS 45.0%
AAGTCTTCCGGTGTTTGTAG+TGG - chr6.3:39146263-39146282 None:intergenic 45.0%
AAGTCTTCTGGCGTTTGAAG+TGG - chr6.3:39146137-39146156 None:intergenic 45.0%
AATAAGCAGGGTTCGCTACA+TGG - chr6.3:39150329-39150348 None:intergenic 45.0%
AATACAGTCTCGACACGTCT+CGG + chr6.3:39147249-39147268 MS.gene80438:CDS 45.0%
ACAGGAGCAATGGAAGTTCA+TGG - chr6.3:39149396-39149415 None:intergenic 45.0%
ACGGAACGTAGTGTTCCAAA+TGG + chr6.3:39146470-39146489 MS.gene80438:CDS 45.0%
AGAGACAACTAAGTTGCCTC+AGG + chr6.3:39148611-39148630 MS.gene80438:CDS 45.0%
AGCATGTCCTAAAGTTCTCG+AGG + chr6.3:39150043-39150062 MS.gene80438:CDS 45.0%
AGCTCCTAGATTCAGCAACA+AGG + chr6.3:39146604-39146623 MS.gene80438:CDS 45.0%
AGGAAACTTGGGGATAACAC+TGG + chr6.3:39146752-39146771 MS.gene80438:CDS 45.0%
AGGCAATGATCAGCCACAAT+TGG + chr6.3:39147294-39147313 MS.gene80438:CDS 45.0%
ATGACACCAATCCCTGTTGA+AGG + chr6.3:39147214-39147233 MS.gene80438:CDS 45.0%
ATGGCAAAACACAGGAGCAA+TGG - chr6.3:39149406-39149425 None:intergenic 45.0%
CAATTGGTGAATGCCTCAAC+AGG + chr6.3:39147310-39147329 MS.gene80438:CDS 45.0%
CAGTTACCTGATCAAATGCC+GGG + chr6.3:39146044-39146063 MS.gene80438:CDS 45.0%
CCAAAGGATCGCGGTTTAAA+GGG + chr6.3:39146776-39146795 MS.gene80438:CDS 45.0%
CCAGCATCATGTATCTTGGA+TGG - chr6.3:39150677-39150696 None:intergenic 45.0%
CCATCCAAGATACATGATGC+TGG + chr6.3:39150674-39150693 MS.gene80438:CDS 45.0%
CCCTTTAAACCACGATCCAT+TGG - chr6.3:39147868-39147887 None:intergenic 45.0%
CGAAAGTTCTCATTCGGAAG+TGG + chr6.3:39148563-39148582 MS.gene80438:CDS 45.0%
CTAGATCCTTCAACAGGGAT+TGG - chr6.3:39147223-39147242 None:intergenic 45.0%
CTGTTTGGCCAGAAAGTTTC+CGG + chr6.3:39150117-39150136 MS.gene80438:CDS 45.0%
CTTTGTACTGGAGCTATAGC+AGG - chr6.3:39147649-39147668 None:intergenic 45.0%
GACAGGTATCTGCAACAAGT+AGG - chr6.3:39148752-39148771 None:intergenic 45.0%
GACATGCTAAAGTGGACAAG+TGG - chr6.3:39150031-39150050 None:intergenic 45.0%
GACTGAACCTGACTTAGCAT+TGG - chr6.3:39147065-39147084 None:intergenic 45.0%
GCAGTTACCTGATCAAATGC+CGG + chr6.3:39146043-39146062 MS.gene80438:CDS 45.0%
GCCAGTCCAAAAAAGGTTCA+GGG - chr6.3:39149003-39149022 None:intergenic 45.0%
GCCATTCGATGATTTCAGTC+GGG + chr6.3:39145752-39145771 MS.gene80438:CDS 45.0%
GCTGATGTGTGATGTGATGA+GGG - chr6.3:39145840-39145859 None:intergenic 45.0%
GGAGCTATAGCAGGAATAGT+TGG - chr6.3:39147640-39147659 None:intergenic 45.0%
GGATAATAGGGGAAGTTTGC+TGG + chr6.3:39149962-39149981 MS.gene80438:intron 45.0%
GTAAAGCTTGTGCACTGCAT+AGG + chr6.3:39148827-39148846 MS.gene80438:CDS 45.0%
GTCCTTACCACATCAAAAGC+CGG + chr6.3:39146169-39146188 MS.gene80438:CDS 45.0%
GTGTGTGGCTTCACCTAAAA+TGG + chr6.3:39147195-39147214 MS.gene80438:CDS 45.0%
TCAGCAAAACCCATATCGTG+AGG - chr6.3:39145810-39145829 None:intergenic 45.0%
TCCAAAGGATCGCGGTTTAA+AGG + chr6.3:39146775-39146794 MS.gene80438:CDS 45.0%
TCCCGACTGAAATCATCGAA+TGG - chr6.3:39145756-39145775 None:intergenic 45.0%
TCTAATATGACAGACCCTGC+TGG + chr6.3:39148321-39148340 MS.gene80438:CDS 45.0%
TGATCTTGCCATGAGAGCTA+GGG + chr6.3:39150465-39150484 MS.gene80438:CDS 45.0%
TGCTGATGTGTGATGTGATG+AGG - chr6.3:39145841-39145860 None:intergenic 45.0%
TGGGGATAACACTAGTCCAA+AGG + chr6.3:39146760-39146779 MS.gene80438:CDS 45.0%
TGTCTTACATGTGGCGATGT+AGG + chr6.3:39148772-39148791 MS.gene80438:CDS 45.0%
TTCCGTTTAGACCTTTCAGC+TGG - chr6.3:39146848-39146867 None:intergenic 45.0%
TTCTCATTCGGAAGTGGAGA+TGG + chr6.3:39148569-39148588 MS.gene80438:CDS 45.0%
! AGTACTGAAACTGAAGCTGC+AGG + chr6.3:39147553-39147572 MS.gene80438:CDS 45.0%
! CCTGACTTATCATTGGTCTC+GGG - chr6.3:39146989-39147008 None:intergenic 45.0%
! GACTGGCCCCATCTTAATTT+AGG + chr6.3:39149016-39149035 MS.gene80438:intron 45.0%
! GTTGAGGCATTCACCAATTG+TGG - chr6.3:39147310-39147329 None:intergenic 45.0%
! TAGTCTTCCGGCTTTTGATG+TGG - chr6.3:39146179-39146198 None:intergenic 45.0%
! TTCCGGCTTTTGATGTGGTA+AGG - chr6.3:39146174-39146193 None:intergenic 45.0%
!! ACCTGACTTAGCATTGACCT+CGG - chr6.3:39147059-39147078 None:intergenic 45.0%
!! TTTGACTGCCGACTTTGTAC+TGG - chr6.3:39147661-39147680 None:intergenic 45.0%
!!! ACAGGGATTGGTGCCATTTT+AGG - chr6.3:39148162-39148181 None:intergenic 45.0%
!!! ACCCTGAACCTTTTTTGGAC+TGG + chr6.3:39148999-39149018 MS.gene80438:intron 45.0%
AACACTGGTCCAATGGATCG+TGG + chr6.3:39147856-39147875 MS.gene80438:CDS 50.0%
AACACTGGTGCAAAGGGTGA+TGG + chr6.3:39147967-39147986 MS.gene80438:CDS 50.0%
ACTGCAGCTTCCGATACTTG+AGG - chr6.3:39147508-39147527 None:intergenic 50.0%
AGATGGGGCCAGTCCAAAAA+AGG - chr6.3:39149010-39149029 None:intergenic 50.0%
AGCAGTTGCACATCCTTTGC+TGG - chr6.3:39149796-39149815 None:intergenic 50.0%
AGCTCTCATGGCAAGATCAG+TGG - chr6.3:39150464-39150483 None:intergenic 50.0%
AGGGCCTATCATCAGCATAG+CGG - chr6.3:39145905-39145924 None:intergenic 50.0%
AGTGGAGATTGATGCTCCTG+CGG + chr6.3:39147525-39147544 MS.gene80438:CDS 50.0%
AGTTGGCACGCTTCTGTAAG+AGG + chr6.3:39145979-39145998 MS.gene80438:CDS 50.0%
ATGGCACCAATCCCTGTTGA+AGG + chr6.3:39148165-39148184 MS.gene80438:CDS 50.0%
CATGATGCTGATGCATCTGG+TGG - chr6.3:39147442-39147461 None:intergenic 50.0%
CCCGAGACCAATGATAAGTC+AGG + chr6.3:39146986-39147005 MS.gene80438:CDS 50.0%
CCCTTTAAACCGCGATCCTT+TGG - chr6.3:39146779-39146798 None:intergenic 50.0%
CGAAAGTTCTCAGTCGGAAG+TGG + chr6.3:39147576-39147595 MS.gene80438:CDS 50.0%
CGTGATATTATGGGAGCCGT+AGG + chr6.3:39146908-39146927 MS.gene80438:CDS 50.0%
CTCTTGTCACTGTAGTGTCC+CGG - chr6.3:39146065-39146084 None:intergenic 50.0%
CTGATCTTGCCATGAGAGCT+AGG + chr6.3:39150464-39150483 MS.gene80438:CDS 50.0%
CTTGATATTAGGGGAGCCGT+AGG + chr6.3:39147997-39148016 MS.gene80438:CDS 50.0%
GCGCTTACCACTACAAACAC+CGG + chr6.3:39146253-39146272 MS.gene80438:CDS 50.0%
GGCCAGTCCAAAAAAGGTTC+AGG - chr6.3:39149004-39149023 None:intergenic 50.0%
GGCTCCCATAATATCACGCT+TGG - chr6.3:39146906-39146925 None:intergenic 50.0%
GGCTCCCCTAATATCAAGCT+TGG - chr6.3:39147995-39148014 None:intergenic 50.0%
GTCACCGCTATGCTGATGAT+AGG + chr6.3:39145898-39145917 MS.gene80438:CDS 50.0%
GTTTCAGTACTAACCTCCGC+AGG - chr6.3:39147544-39147563 None:intergenic 50.0%
TAGTGTCCCGGCATTTGATC+AGG - chr6.3:39146053-39146072 None:intergenic 50.0%
TCGCCACATGTAAGACAGAC+AGG - chr6.3:39148769-39148788 None:intergenic 50.0%
TGCAGGCGAAAGTTCTCAGT+CGG + chr6.3:39147570-39147589 MS.gene80438:CDS 50.0%
TGGGGATAACACTGGTCCAA+TGG + chr6.3:39147849-39147868 MS.gene80438:CDS 50.0%
TTCTCAGTCGGAAGTGGAGA+TGG + chr6.3:39147582-39147601 MS.gene80438:CDS 50.0%
TTGACTGCCGACGTTGTACT+GGG - chr6.3:39146340-39146359 None:intergenic 50.0%
TTTGACTGCCGACGTTGTAC+TGG - chr6.3:39146341-39146360 None:intergenic 50.0%
! GGTGAAGTCGATTCCAGCAA+AGG + chr6.3:39149780-39149799 MS.gene80438:CDS 50.0%
! TGGGGATTATGCTGGTGCTA+AGG + chr6.3:39146658-39146677 MS.gene80438:CDS 50.0%
!! ACCTGACTTAGCATTGGCCT+CGG - chr6.3:39148079-39148098 None:intergenic 50.0%
!! AGAGGCATTTACCACGGCAA+AGG + chr6.3:39145997-39146016 MS.gene80438:CDS 50.0%
!! CCTGACTTAGCATTGACCTC+GGG - chr6.3:39147058-39147077 None:intergenic 50.0%
!! TCAAGTATCGGAAGCTGCAG+TGG + chr6.3:39147507-39147526 MS.gene80438:CDS 50.0%
CATGACGCTGATGCATCTGG+TGG - chr6.3:39148429-39148448 None:intergenic 55.0%
CCCGAGGTCAATGCTAAGTC+AGG + chr6.3:39147055-39147074 MS.gene80438:CDS 55.0%
CGTTAGCCCCAGTACAACGT+CGG + chr6.3:39146330-39146349 MS.gene80438:CDS 55.0%
GCAGGAATAGTTGGTCCCAG+CGG - chr6.3:39146311-39146330 None:intergenic 55.0%
GCATTTACCACGGCAAAGGC+CGG + chr6.3:39146001-39146020 MS.gene80438:CDS 55.0%
GGGGCTAACGCAGGAATAGT+TGG - chr6.3:39146320-39146339 None:intergenic 55.0%
GTCACCGTGTCAAAACCGCT+GGG + chr6.3:39147613-39147632 MS.gene80438:CDS 55.0%
GTTGGTCCCAGCGTTTGATG+CGG - chr6.3:39146302-39146321 None:intergenic 55.0%
TGACTGCCGACGTTGTACTG+GGG - chr6.3:39146339-39146358 None:intergenic 55.0%
TGCTCACCGCATCAAACGCT+GGG + chr6.3:39146293-39146312 MS.gene80438:CDS 55.0%
TTGCCGCATCGAACACCCAA+AGG + chr6.3:39146089-39146108 MS.gene80438:CDS 55.0%
TTGGGTGTTCGATGCGGCAA+AGG - chr6.3:39146089-39146108 None:intergenic 55.0%
! TCTGGTGGTGCAGATGCAAG+TGG - chr6.3:39147427-39147446 None:intergenic 55.0%
!! CCTGACTTAGCATTGGCCTC+GGG - chr6.3:39148078-39148097 None:intergenic 55.0%
!! TAGGGTTTTGGCGCTCGATG+TGG - chr6.3:39146221-39146240 None:intergenic 55.0%
!! TGGTCCCAGCGGTTTTGACA+CGG - chr6.3:39147620-39147639 None:intergenic 55.0%
CCCGAGGCCAATGCTAAGTC+AGG + chr6.3:39148075-39148094 MS.gene80438:CDS 60.0%
CGTCACCGTGTCAAAACCGC+TGG + chr6.3:39147612-39147631 MS.gene80438:CDS 60.0%
CGTTGTACTGGGGCTAACGC+AGG - chr6.3:39146329-39146348 None:intergenic 60.0%
GGAGATTGATGCTCCTGCGG+AGG + chr6.3:39147528-39147547 MS.gene80438:CDS 60.0%
GGTGAAGCCACACACCCTGA+TGG - chr6.3:39147190-39147209 None:intergenic 60.0%
GTGCTCACCGCATCAAACGC+TGG + chr6.3:39146292-39146311 MS.gene80438:CDS 60.0%
TAGCATTCCGGCCTTTGCCG+TGG - chr6.3:39146011-39146030 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 39145750 39150712 39145750 ID=MS.gene80438
chr6.3 mRNA 39145750 39150712 39145750 ID=MS.gene80438.t1;Parent=MS.gene80438
chr6.3 exon 39145750 39148632 39145750 ID=MS.gene80438.t1.exon1;Parent=MS.gene80438.t1
chr6.3 CDS 39145750 39148632 39145750 ID=cds.MS.gene80438.t1;Parent=MS.gene80438.t1
chr6.3 exon 39148763 39148848 39148763 ID=MS.gene80438.t1.exon2;Parent=MS.gene80438.t1
chr6.3 CDS 39148763 39148848 39148763 ID=cds.MS.gene80438.t1;Parent=MS.gene80438.t1
chr6.3 exon 39149524 39149859 39149524 ID=MS.gene80438.t1.exon3;Parent=MS.gene80438.t1
chr6.3 CDS 39149524 39149859 39149524 ID=cds.MS.gene80438.t1;Parent=MS.gene80438.t1
chr6.3 exon 39149971 39150195 39149971 ID=MS.gene80438.t1.exon4;Parent=MS.gene80438.t1
chr6.3 CDS 39149971 39150195 39149971 ID=cds.MS.gene80438.t1;Parent=MS.gene80438.t1
chr6.3 exon 39150420 39150544 39150420 ID=MS.gene80438.t1.exon5;Parent=MS.gene80438.t1
chr6.3 CDS 39150420 39150544 39150420 ID=cds.MS.gene80438.t1;Parent=MS.gene80438.t1
chr6.3 exon 39150624 39150712 39150624 ID=MS.gene80438.t1.exon6;Parent=MS.gene80438.t1
chr6.3 CDS 39150624 39150712 39150624 ID=cds.MS.gene80438.t1;Parent=MS.gene80438.t1
Gene Sequence

>MS.gene80438

ATGCCATTCGATGATTTCAGTCGGGAACCATTGAACTTGAACTTCGATTACCAAATTCCTCACGATATGGGTTTTGCTGATGATTGGCCCTCATCACATCACACATCAGCACACTTTGCTGATGACAATCAGTTGGAATATCAAAGGGGTCACCGCTATGCTGATGATAGGCCCTCATCACATCACACATCAGCACACTATGCTGATAAGAAACGCTTAAAAGATCGAAAGTTGGCACGCTTCTGTAAGAGGCATTTACCACGGCAAAGGCCGGAATGCTATGTTGATAAGAGGCAGTTACCTGATCAAATGCCGGGACACTACAGTGACAAGAGTCCTTTGCCGCATCGAACACCCAAAGGTTTTGCTGATAAAAGAAATTTACCACTTCAAACGCCAGAAGACTTTGCTGATAGAAGGTCCTTACCACATCAAAAGCCGGAAGACTATGCCGATAACAAGTGCTTACCACATCGAGCGCCAAAACCCTATTCTGATAAGAGGCGCTTACCACTACAAACACCGGAAGACTTTGCTGATAAGTGCTCACCGCATCAAACGCTGGGACCAACTATTCCTGCGTTAGCCCCAGTACAACGTCGGCAGTCAAATATAGTATGCTGTAAAATTTGTAATGTTACGATGCCTGACAAATGTTTCGAAGAACATAATAATGGAAAGAAACATCGAAAGAAATTAGAAGAACTACATGAGCAATCAACGGAACGTAGTGTTCCAAATGGACGAGATAGTAGACTATTTCCAAATTCTTCTGGAATGAATCCGGTATTTCAACCTATGAAAGTCGCAGAATCTAAGAAAAATGGGCACCCTGTAGAAAATGTGTGTCGTGAAGCTCCTAGATTCAGCAACAAGGAAGTTCCAGCTGTAGATTCTAAATTGAAATCTGGGGATTATGCTGGTGCTAAGGATCTCGATTTCAAGGTTGAAAATGTGCGTCCTAGTTTCAAGCAGAAGAATGTTCTGGCTGAAAGTTCTACAAGGAAACTTGGGGATAACACTAGTCCAAAGGATCGCGGTTTAAAGGGAGAAAATGTGAAAAATGAAGCTCCCATTTTAAAGCACAAGAATGTTCCAGCTGAAAGGTCTAAACGGAAACTTATGGATAACACTGGTGCAAAGGATGATGGTTCCAAGCGTGATATTATGGGAGCCGTAGGAGATAAATACATGAAGATGGATAATGGGGTAAGAAGACCCGTGAAATCATCAAAACCCGAGACCAATGATAAGTCAGGTTCAGTCAAATCTCTAGTCCAAAGACCTGGATTAAAATCATCAAAACCCGAGGTCAATGCTAAGTCAGGTTCAGTCAAATCTCCAGTCGAAAGATCTGGAGTAAAATCATCAAAACCTGATGCCAATGCTAAATCAAGTTCAGTCAAATCTCCAGTCCAAAGACCAGGATTAAAACAACCATCAGGGTGTGTGGCTTCACCTAAAATGACACCAATCCCTGTTGAAGGATCTAGTTTCGAAATACAGTCTCGACACGTCTCGGCCTCACTGTCTCAAGAGTCTAAAGGCAATGATCAGCCACAATTGGTGAATGCCTCAACAGGCTCTAATATGACACACACTGCTGGTTCTATGACTAACAACCAAACAGAAGTTGTGAATTCTGATTTTGCAGCACTCAAAGTTGTTACAGAACCACTTGCATCTGCACCACCAGATGCATCAGCATCATGTTTTGAACTTCTAACTGACCATGGTCTACATACTGAAGTTGAACCTCAAGTATCGGAAGCTGCAGTGGAGATTGATGCTCCTGCGGAGGTTAGTACTGAAACTGAAGCTGCAGGCGAAAGTTCTCAGTCGGAAGTGGAGATGGATGTTCTCGTCACCGTGTCAAAACCGCTGGGACCAACTATTCCTGCTATAGCTCCAGTACAAAGTCGGCAGTCAAATATAATATGCTGTAAAATTTGTAATGTTAAGATGCATCACAACTGTTTGGAAGGACATAATAATGGAAAGAAACATCGAATGTTATTAAAATCAACGGAACTTAGTGTTCCAAATGGACGAGATAGTAGAGTATTTCCAAATTCTTCTGGAAGTTCTACAAGGAAACTTGGGGATAACACTGGTCCAATGGATCGTGGTTTAAAGGGAGAAAATGTGAAAAATGAAGCTCCCATTTTAAAGCACAAGAATGTTCCAGCTGAAAGGTCTAAACGGAAACTTATGGATAACACTGGTGCAAAGGGTGATGGTTCCAAGCTTGATATTAGGGGAGCCGTAGGAGATAAATACATGAAGATGGATAATGGGGTAAGAAGACCAGTGAAATCATCAAAACCCGAGGCCAATGCTAAGTCAGGTTCAGTCAAATCTCTAGTCCAAAGACCTGGATTAAAACAACCATCAGGGTGTGTGGCTTCACCTAAAATGGCACCAATCCCTGTTGAAGGATCTAGTTTTGAAATACAGTCTCGACATGTCTCGGCCACACTGTCTCAAGAGTCTAAAGGCAATGAACATCAGAAGTTTCAAAATATTGTGGAAAAGTATGATCAGCCACAATTGGTGAATGCTTCAACAGGCTCTAATATGACAGACCCTGCTGGTTCTATGACTAACAACCAAACAGAAGTTGTGAATTCTGATTTTGCAGCGGTCAAAGTTGTTACAGAACCACTTGCATCTGCACCACCAGATGCATCAGCGTCATGTTTTGAACTCGTAACTGAACGTGGTCTAGATACTGTAGTTGAACCTCAAGTATCGGAAGCTGCAGTGGAGATTGATGCTCCTGCGGAGGTTAGTACTGAAACTGAAGTTGCAGACGAAAGTTCTCATTCGGAAGTGGAGATGGATGTTCTCGTCACCGTGTCAGAGACAACTAAGTTGCCTCAGGTTTTTCTCATTTTCTGACTTCCCTAGGAAGTTTCAAATAATATTGCTTTTTCTTCTTCTCAAAATCTGTGTTTTTGGAGCTATATACCTTTTATGAATCACTGAATTAAACTATGCCTACTTGTTGCAGATACCTGTCTGTCTTACATGTGGCGATGTAGGCTTTGAAGAGACATTGGTGTCTTGCAACAAATGTAAAGCTTGTGCACTGCATAGGTACTTGCGACTTACTCTTTCCATCTACTATTTTGCATTGCATCTACTTGCAGCTTATTTTAATCATTGTATTTTGCAACCACTTCTGTTTCTATCCGGAAATGTGACTCCAAAAAATATTGAAACGCTACACATTGCTTCGCATTATTTACCCTGAACCTTTTTTGGACTGGCCCCATCTTAATTTAGGAAAAGCTGAAATAAGATCTTATATATTAGTTACGATGGATGATATTAGTTACGATGGATGGTAAATTATGGTTTTAGCAGGTTTTCATCATCACTAAAGTAGCAGATGCATCTATTTTCCTTGCCATATGGACATGCTTTTAAATTTCTATTGGTTTAGAAGTAGAATTCTGAAGACATTAATAAGGGTAATATGGATCTAAAACATGATTTAGATGTACGTGACTAATGTTTTATATCGTAAGATATTGTTCTCCTGTGTTTCCAATGCATCTACTCTATAAGAGAATATAATTGTGTGAACACCATTGTTCTCTTCTTTTAATTTAGTGAACAACACATTTGTATTAATATACCATGAACTTCCATTGCTCCTGTGTTTTGCCATAATATTTTTCTTAAGATGAAGCTTTTGCCTTTTATGGAGTTGGAAGCTTTTGCCATCGCAGTGTTTCACATTCTAAAATACCTTTTTGGCCTTTTCAGGTATTGTTTAGATGGGCCTGTCATTTTTACGGATGAAGTTATTTGGTTTTGTGAGGACTGCGAGCCATATGTAGTAGTCATAAATGACTCCGATAGTGAGTCAACAGATTCAGACGACGAGACTACAAATTCAGATATTGAGATTACTGATTCAGAAAAAGGTGAAGTAGTAGTCATAAATGACTCTGATAGTGAGTCGACAGATTCAGACGACGAGACTACAGATTCAGATATTGAGATTACTGATTCAGAAAAAGGTGAAGTCGATTCCAGCAAAGGATGTGCAACTGCTGTTACTATTGCTGATCCACAACCTATTTCTGATCCAATCTGGAGGTAAGAAATTTGTTCTTATTATGACTTCTTTTACATTCTTTTGGAATTAATGTAACTTTTGTAGCTGCTCCTGTGAAATCATTGTCTGAAGTTGAATTTTGTGGATAATAGGGGAAGTTTGCTGGTTCTCAACAAAAGCTTTGGCAAAATCATCACTGGATTATTGTGCCACTTGTCCACTTTAGCATGTCCTAAAGTTCTCGAGGAGACAAAGCATCTACCTAATGTGCTTGAAGCAGACATGATTCAAAGAGAAGCTGTTTGGCCAGAAAGTTTCCGGAAATTTGGAACGAATAATCTAAGCATTGGCCTTTATTTCTTTCCTCAGAATGAAAGGTGAGGTTTTGCACAAACTTAAGAACATGGTTGATTCGATTCGATAAACATTTTTGTTTTTTTATTATTTATTGTGTTCAGTACTCATCCAAATATGGTTTTATGATTGAACATTATGGCGTAATTTGATCCATGTAGCGAACCCTGCTTATTGAGATAAGACTTTGTATAAGTTTTTTTTATAGCTCTGATATGATCTCTCCATGTTAATGTCTTTTCGATAGGGATGAGAGATATTTTGACCAGCTAGTTGATGAAATGATTTCCACTGATCTTGCCATGAGAGCTAGGGTTGATAAAGCTGAGCTTTTAATATTTCCTTCTACAATGCTCCCAAGAAAATACAAGAGTGAGTTACATTACATTTACATATATGACTTTTATTGTTTATTAATTGCGTATAAGTTTTTGATTTAATCATTTTGCAGGGTTTCAATCAAAGTATTACTTGTGGGGAGTTTATAGAAGAAATCAAGTACCATCCAAGATACATGATGCTGGTTCAAGAAATGAATAG
Protein sequence

>MS.gene80438.t1

MPFDDFSREPLNLNFDYQIPHDMGFADDWPSSHHTSAHFADDNQLEYQRGHRYADDRPSSHHTSAHYADKKRLKDRKLARFCKRHLPRQRPECYVDKRQLPDQMPGHYSDKSPLPHRTPKGFADKRNLPLQTPEDFADRRSLPHQKPEDYADNKCLPHRAPKPYSDKRRLPLQTPEDFADKCSPHQTLGPTIPALAPVQRRQSNIVCCKICNVTMPDKCFEEHNNGKKHRKKLEELHEQSTERSVPNGRDSRLFPNSSGMNPVFQPMKVAESKKNGHPVENVCREAPRFSNKEVPAVDSKLKSGDYAGAKDLDFKVENVRPSFKQKNVLAESSTRKLGDNTSPKDRGLKGENVKNEAPILKHKNVPAERSKRKLMDNTGAKDDGSKRDIMGAVGDKYMKMDNGVRRPVKSSKPETNDKSGSVKSLVQRPGLKSSKPEVNAKSGSVKSPVERSGVKSSKPDANAKSSSVKSPVQRPGLKQPSGCVASPKMTPIPVEGSSFEIQSRHVSASLSQESKGNDQPQLVNASTGSNMTHTAGSMTNNQTEVVNSDFAALKVVTEPLASAPPDASASCFELLTDHGLHTEVEPQVSEAAVEIDAPAEVSTETEAAGESSQSEVEMDVLVTVSKPLGPTIPAIAPVQSRQSNIICCKICNVKMHHNCLEGHNNGKKHRMLLKSTELSVPNGRDSRVFPNSSGSSTRKLGDNTGPMDRGLKGENVKNEAPILKHKNVPAERSKRKLMDNTGAKGDGSKLDIRGAVGDKYMKMDNGVRRPVKSSKPEANAKSGSVKSLVQRPGLKQPSGCVASPKMAPIPVEGSSFEIQSRHVSATLSQESKGNEHQKFQNIVEKYDQPQLVNASTGSNMTDPAGSMTNNQTEVVNSDFAAVKVVTEPLASAPPDASASCFELVTERGLDTVVEPQVSEAAVEIDAPAEVSTETEVADESSHSEVEMDVLVTVSETTKLPQIPVCLTCGDVGFEETLVSCNKCKACALHRYCLDGPVIFTDEVIWFCEDCEPYVVVINDSDSESTDSDDETTNSDIEITDSEKGEVVVINDSDSESTDSDDETTDSDIEITDSEKGEVDSSKGCATAVTIADPQPISDPIWRGSLLVLNKSFGKIITGLLCHLSTLACPKVLEETKHLPNVLEADMIQREAVWPESFRKFGTNNLSIGLYFFPQNERDERYFDQLVDEMISTDLAMRARVDKAELLIFPSTMLPRKYKRFQSKYYLWGVYRRNQVPSKIHDAGSRNE