Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80516.t1 | XP_013444705.1 | 93.6 | 125 | 8 | 0 | 26 | 150 | 14 | 138 | 1.60E-57 | 233.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80516.t1 | Q9LSV0 | 76.0 | 129 | 30 | 1 | 26 | 153 | 14 | 142 | 2.3e-49 | 197.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80516.t1 | I3SHU4 | 93.6 | 125 | 8 | 0 | 26 | 150 | 14 | 138 | 1.1e-57 | 233.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05415 | MS.gene80516 | 0.805781 | 1.13E-49 | -1.69E-46 |
| MS.gene056142 | MS.gene80516 | 0.842109 | 3.16E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80516.t1 | MTR_8g028120 | 93.600 | 125 | 8 | 0 | 26 | 150 | 14 | 138 | 2.75e-78 | 241 |
| MS.gene80516.t1 | MTR_1g075200 | 87.629 | 97 | 4 | 2 | 213 | 302 | 344 | 439 | 2.83e-49 | 172 |
| MS.gene80516.t1 | MTR_1g475250 | 87.629 | 97 | 4 | 2 | 213 | 302 | 344 | 439 | 2.83e-49 | 172 |
| MS.gene80516.t1 | MTR_1g075260 | 69.697 | 99 | 22 | 2 | 211 | 302 | 317 | 414 | 3.37e-35 | 134 |
| MS.gene80516.t1 | MTR_1g075260 | 69.697 | 99 | 22 | 2 | 211 | 302 | 341 | 438 | 4.27e-35 | 134 |
| MS.gene80516.t1 | MTR_2g099910 | 53.600 | 125 | 57 | 1 | 27 | 150 | 60 | 184 | 4.92e-35 | 128 |
| MS.gene80516.t1 | MTR_2g099910 | 53.600 | 125 | 57 | 1 | 27 | 150 | 60 | 184 | 9.76e-35 | 127 |
| MS.gene80516.t1 | MTR_1g075250 | 67.000 | 100 | 15 | 2 | 210 | 302 | 336 | 424 | 2.17e-34 | 132 |
| MS.gene80516.t1 | MTR_2g099910 | 53.600 | 125 | 57 | 1 | 27 | 150 | 60 | 184 | 2.99e-34 | 129 |
| MS.gene80516.t1 | MTR_1g070385 | 61.628 | 86 | 24 | 2 | 224 | 302 | 637 | 720 | 7.53e-25 | 105 |
| MS.gene80516.t1 | MTR_7g096300 | 55.556 | 99 | 30 | 3 | 211 | 302 | 582 | 673 | 1.37e-24 | 105 |
| MS.gene80516.t1 | MTR_1g475250 | 84.906 | 53 | 7 | 1 | 213 | 265 | 344 | 395 | 8.22e-22 | 95.9 |
| MS.gene80516.t1 | MTR_8g102470 | 31.159 | 138 | 93 | 2 | 26 | 161 | 49 | 186 | 2.82e-14 | 73.2 |
| MS.gene80516.t1 | MTR_8g102470 | 31.159 | 138 | 93 | 2 | 26 | 161 | 25 | 162 | 3.74e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80516.t1 | AT3G25530 | 75.969 | 129 | 30 | 1 | 26 | 153 | 14 | 142 | 9.44e-64 | 201 |
| MS.gene80516.t1 | AT3G25530 | 75.969 | 129 | 30 | 1 | 26 | 153 | 14 | 142 | 6.07e-63 | 202 |
| MS.gene80516.t1 | AT3G25530 | 68.750 | 128 | 30 | 1 | 26 | 153 | 14 | 131 | 2.42e-54 | 179 |
| MS.gene80516.t1 | AT1G17650 | 55.200 | 125 | 55 | 1 | 27 | 150 | 22 | 146 | 2.67e-34 | 128 |
| MS.gene80516.t1 | AT1G17650 | 54.762 | 126 | 56 | 1 | 27 | 151 | 81 | 206 | 3.66e-34 | 129 |
| MS.gene80516.t1 | AT1G04280 | 70.513 | 78 | 16 | 1 | 232 | 302 | 322 | 399 | 3.88e-29 | 117 |
| MS.gene80516.t1 | AT1G04280 | 70.513 | 78 | 16 | 1 | 232 | 302 | 376 | 453 | 7.13e-29 | 117 |
| MS.gene80516.t1 | AT1G06750 | 61.616 | 99 | 24 | 4 | 211 | 302 | 340 | 431 | 1.54e-27 | 113 |
| MS.gene80516.t1 | AT1G06750 | 61.616 | 99 | 24 | 4 | 211 | 302 | 340 | 431 | 1.54e-27 | 113 |
| MS.gene80516.t1 | AT1G06750 | 61.616 | 99 | 24 | 4 | 211 | 302 | 347 | 438 | 1.72e-27 | 113 |
| MS.gene80516.t1 | AT2G30630 | 59.794 | 97 | 25 | 3 | 213 | 302 | 356 | 445 | 2.92e-26 | 109 |
| MS.gene80516.t1 | AT2G30630 | 59.794 | 97 | 25 | 3 | 213 | 302 | 377 | 466 | 3.06e-26 | 109 |
| MS.gene80516.t1 | AT4G29120 | 28.395 | 162 | 111 | 3 | 26 | 182 | 51 | 212 | 2.35e-12 | 67.4 |
Find 73 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACAAGTTTGCAATATTT+TGG | 0.119289 | 6.3:+36864910 | None:intergenic |
| TTCCTTGAAGCTCCTGTTTC+GGG | 0.242809 | 6.3:-36866885 | MS.gene80516:CDS |
| CTTGTAGCTCTGCTTCTGTT+AGG | 0.288048 | 6.3:+36864207 | None:intergenic |
| TAACTTTATTAGTCCATTCA+TGG | 0.293732 | 6.3:+36866736 | None:intergenic |
| CTTCCTTGAAGCTCCTGTTT+CGG | 0.308871 | 6.3:-36866886 | MS.gene80516:CDS |
| ATTAGTCCATTCATGGAAAC+TGG | 0.310723 | 6.3:+36866743 | None:intergenic |
| CCTTCTACGCCATGGCTTCA+TGG | 0.327105 | 6.3:-36868046 | MS.gene80516:CDS |
| GGGGTTCTTGAGCATATTAA+TGG | 0.347197 | 6.3:-36867601 | MS.gene80516:CDS |
| TAGGTTGTGTTTGATAAGGA+TGG | 0.366826 | 6.3:-36867622 | MS.gene80516:CDS |
| ATCTGATCCTGCAGTTGCTT+TGG | 0.374621 | 6.3:-36867727 | MS.gene80516:CDS |
| GAAGTTCCAGTTTCCATGAA+TGG | 0.383498 | 6.3:-36866749 | MS.gene80516:CDS |
| ATGGCTTCATGGTCACTGTT+TGG | 0.393624 | 6.3:-36868035 | MS.gene80516:CDS |
| CTTGAGCATATTAATGGAAA+AGG | 0.405372 | 6.3:-36867595 | MS.gene80516:CDS |
| GGATATCTTGCAGTTATTAG+AGG | 0.406489 | 6.3:-36865115 | MS.gene80516:CDS |
| GGTTTCTTGCTACCCGAAAC+AGG | 0.408958 | 6.3:+36866873 | None:intergenic |
| CCTTCATTCTTCTATTGTAC+AGG | 0.410131 | 6.3:-36866648 | MS.gene80516:intron |
| CCATGAAGCCATGGCGTAGA+AGG | 0.420998 | 6.3:+36868046 | None:intergenic |
| CATTTCTTGACAACAGCTGC+AGG | 0.421749 | 6.3:+36867771 | None:intergenic |
| TTGCAGTTATTAGAGGCATT+AGG | 0.422529 | 6.3:-36865108 | MS.gene80516:intron |
| TTGTAGCTCTGCTTCTGTTA+GGG | 0.423721 | 6.3:+36864208 | None:intergenic |
| TGGAAACTGGAACTTCTGAT+TGG | 0.429237 | 6.3:+36866756 | None:intergenic |
| AGGTTGTGTTTGATAAGGAT+GGG | 0.430243 | 6.3:-36867621 | MS.gene80516:CDS |
| CAACAAGAGGAAAATTCTAC+AGG | 0.441415 | 6.3:-36865193 | MS.gene80516:CDS |
| TGATCCTGCAGTTGCTTTGG+CGG | 0.453584 | 6.3:-36867724 | MS.gene80516:intron |
| AATGGACTAATAAAGTTAAG+TGG | 0.471280 | 6.3:-36866731 | MS.gene80516:CDS |
| ACTAGTTGGCCATCTTCTGC+AGG | 0.480199 | 6.3:+36866852 | None:intergenic |
| ATGGACTAATAAAGTTAAGT+GGG | 0.489288 | 6.3:-36866730 | MS.gene80516:CDS |
| CTCTATTGAATCTGCAGAAG+CGG | 0.490130 | 6.3:-36864238 | MS.gene80516:CDS |
| CGCTTCTGCAGATTCAATAG+AGG | 0.492291 | 6.3:+36864239 | None:intergenic |
| GTGGAACATGGTGCTTCAGT+TGG | 0.499862 | 6.3:-36867801 | MS.gene80516:CDS |
| TACCCGAAACAGGAGCTTCA+AGG | 0.501374 | 6.3:+36866883 | None:intergenic |
| GGTTGTGTTTGATAAGGATG+GGG | 0.501563 | 6.3:-36867620 | MS.gene80516:CDS |
| GCAAACTTGTTGACAGTGCT+AGG | 0.509508 | 6.3:-36864900 | MS.gene80516:CDS |
| CTAGTTGGTGTGGTTTGTGA+TGG | 0.513280 | 6.3:-36865136 | MS.gene80516:CDS |
| CTATACAAAGCAAGTGAATG+AGG | 0.513355 | 6.3:-36865230 | MS.gene80516:CDS |
| TGAAATGAATAACCTTAGAG+AGG | 0.515209 | 6.3:+36868004 | None:intergenic |
| GAGACAATGTAATTTGTGGC+AGG | 0.517896 | 6.3:-36866815 | MS.gene80516:CDS |
| GCCACAAATTACATTGTCTC+CGG | 0.519602 | 6.3:+36866818 | None:intergenic |
| CTACAGGCAATCAAAGCAAA+AGG | 0.523095 | 6.3:-36866915 | MS.gene80516:intron |
| CCAACTAGCTCAATTCTGTA+AGG | 0.525410 | 6.3:+36865151 | None:intergenic |
| CCTTACAGAATTGAGCTAGT+TGG | 0.526663 | 6.3:-36865151 | MS.gene80516:CDS |
| GAGTCGAGATCAAAGATGTC+AGG | 0.526710 | 6.3:+36868081 | None:intergenic |
| GGAAGAGAAAAGTCGTTAGC+TGG | 0.526768 | 6.3:-36864165 | MS.gene80516:CDS |
| CGGCAGCAAGTATAACTAGT+TGG | 0.527224 | 6.3:+36866838 | None:intergenic |
| CCTGTACAATAGAAGAATGA+AGG | 0.527437 | 6.3:+36866648 | None:intergenic |
| CAGAATTGAGCTAGTTGGTG+TGG | 0.527716 | 6.3:-36865146 | MS.gene80516:CDS |
| CTCTATTGCACAGATGCTGT+TGG | 0.532305 | 6.3:-36864877 | MS.gene80516:CDS |
| AGCAAGAAACCTGCAGAAGA+TGG | 0.534673 | 6.3:-36866861 | MS.gene80516:CDS |
| TATTGCACAGATGCTGTTGG+TGG | 0.536088 | 6.3:-36864874 | MS.gene80516:CDS |
| ATTGTAGTGTGATGAATTCG+TGG | 0.563701 | 6.3:-36867820 | MS.gene80516:intron |
| GAAATGAATAACCTTAGAGA+GGG | 0.574002 | 6.3:+36868005 | None:intergenic |
| TGCTGTTGGTGGTCCACCAA+AGG | 0.575982 | 6.3:-36864863 | MS.gene80516:intron |
| TATGACATGAAGGGCAGTGA+GGG | 0.577678 | 6.3:-36864977 | MS.gene80516:intron |
| TGCGGTGACGAAGATCTCAT+AGG | 0.577841 | 6.3:+36868343 | None:intergenic |
| GTCGTTAGCTGGTAATGAAG+AGG | 0.584189 | 6.3:-36864154 | MS.gene80516:CDS |
| CAACTAGTTATACTTGCTGC+CGG | 0.591719 | 6.3:-36866837 | MS.gene80516:CDS |
| AGAAGAAGAACATCAACAAG+AGG | 0.597156 | 6.3:-36865206 | MS.gene80516:CDS |
| ATGTCAGGTAGAGATTCTGC+TGG | 0.598317 | 6.3:+36868096 | None:intergenic |
| GCCGGAGACAATGTAATTTG+TGG | 0.604038 | 6.3:-36866819 | MS.gene80516:CDS |
| AACAAGAGGAAAATTCTACA+GGG | 0.606029 | 6.3:-36865192 | MS.gene80516:CDS |
| TATACAAAGCAAGTGAATGA+GGG | 0.610525 | 6.3:-36865229 | MS.gene80516:CDS |
| CTGACCGCCAAAGCAACTGC+AGG | 0.616743 | 6.3:+36867720 | None:intergenic |
| TCAATCAACCTTCTACGCCA+TGG | 0.617297 | 6.3:-36868054 | MS.gene80516:CDS |
| AAACAGTGACCATGAAGCCA+TGG | 0.618588 | 6.3:+36868037 | None:intergenic |
| TGTGATGAATTCGTGGAACA+TGG | 0.633240 | 6.3:-36867813 | MS.gene80516:CDS |
| TGGACTAATAAAGTTAAGTG+GGG | 0.636202 | 6.3:-36866729 | MS.gene80516:CDS |
| AGTACTGCTTCAAGAAGTCG+AGG | 0.646449 | 6.3:-36864186 | MS.gene80516:CDS |
| GAATGAAGGTAAAAGTTGTG+AGG | 0.658798 | 6.3:+36866662 | None:intergenic |
| CAAGGAATTTCTGCGAAGTG+CGG | 0.661871 | 6.3:+36868325 | None:intergenic |
| GACATCTATCAAGATATCTG+AGG | 0.664883 | 6.3:-36867542 | MS.gene80516:intron |
| CAGGCAATCAAAGCAAAAGG+TGG | 0.667806 | 6.3:-36866912 | MS.gene80516:CDS |
| TTATGACATGAAGGGCAGTG+AGG | 0.692934 | 6.3:-36864978 | MS.gene80516:intron |
| ACAAGAGGAAAATTCTACAG+GGG | 0.709176 | 6.3:-36865191 | MS.gene80516:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTACTATATTAATATACTT+TGG | - | chr6.3:36867419-36867438 | MS.gene80516:intron | 15.0% |
| !!! | AATGTAAAACATTTTGAATA+AGG | + | chr6.3:36867978-36867997 | None:intergenic | 15.0% |
| !!! | ACAACTCAATTTTAAAATTA+AGG | - | chr6.3:36866154-36866173 | MS.gene80516:intron | 15.0% |
| !!! | CTTTTCATTATTGATTTATT+GGG | - | chr6.3:36867903-36867922 | MS.gene80516:intron | 15.0% |
| !!! | TATAATTAACATTTTCCTTT+TGG | - | chr6.3:36867466-36867485 | MS.gene80516:intron | 15.0% |
| !!! | TTAAATAACAAAGAGTATAA+GGG | - | chr6.3:36866082-36866101 | MS.gene80516:intron | 15.0% |
| !!! | TTTAAATAACAAAGAGTATA+AGG | - | chr6.3:36866081-36866100 | MS.gene80516:intron | 15.0% |
| !!! | TTTTCATTATTGATTTATTG+GGG | - | chr6.3:36867904-36867923 | MS.gene80516:intron | 15.0% |
| !! | AAATTCTCGCATATAAAATT+AGG | + | chr6.3:36865281-36865300 | None:intergenic | 20.0% |
| !! | ACTATATTAATATACTTTGG+TGG | - | chr6.3:36867422-36867441 | MS.gene80516:intron | 20.0% |
| !! | ATAGAGGTAAAATTATTCTA+TGG | + | chr6.3:36868234-36868253 | None:intergenic | 20.0% |
| !! | ATATTAATATGTAAGTGCTT+AGG | + | chr6.3:36866337-36866356 | None:intergenic | 20.0% |
| !! | CCAATAAATCAATAATGAAA+AGG | + | chr6.3:36867905-36867924 | None:intergenic | 20.0% |
| !! | CTTATGTATAATAAGCTATT+TGG | + | chr6.3:36864536-36864555 | None:intergenic | 20.0% |
| !! | TAAGCACTTACATATTAATA+TGG | - | chr6.3:36866336-36866355 | MS.gene80516:intron | 20.0% |
| !! | TCTTGAATATTCAATCTAAA+TGG | - | chr6.3:36866814-36866833 | MS.gene80516:CDS | 20.0% |
| !! | TCTTTCATCTATAACAAAAT+AGG | + | chr6.3:36866740-36866759 | None:intergenic | 20.0% |
| !! | TTAAAAACAGAAACTTTCAA+TGG | + | chr6.3:36865178-36865197 | None:intergenic | 20.0% |
| !!! | AATCATCAATCTTGAATTTT+AGG | + | chr6.3:36864225-36864244 | None:intergenic | 20.0% |
| !!! | ATTGAAAGTTTCTGTTTTTA+AGG | - | chr6.3:36865177-36865196 | MS.gene80516:CDS | 20.0% |
| !!! | ATTTTGTTATAGATGAAAGA+AGG | - | chr6.3:36866740-36866759 | MS.gene80516:CDS | 20.0% |
| !!! | CCTTTTCATTATTGATTTAT+TGG | - | chr6.3:36867902-36867921 | MS.gene80516:intron | 20.0% |
| !!! | GCAAATAAAAGATATTTTCT+TGG | + | chr6.3:36865934-36865953 | None:intergenic | 20.0% |
| !!! | GCTTTATTTTCTTCATTATA+AGG | - | chr6.3:36864250-36864269 | MS.gene80516:CDS | 20.0% |
| !!! | GTATTACTTTCTTTTATACT+TGG | - | chr6.3:36865698-36865717 | MS.gene80516:intron | 20.0% |
| !!! | TAAAACATTTTGAATAAGGT+TGG | + | chr6.3:36867974-36867993 | None:intergenic | 20.0% |
| !!! | TGCAGTTATTATTTTGAATT+TGG | - | chr6.3:36865152-36865171 | MS.gene80516:CDS | 20.0% |
| !!! | TTGTACTTTTTTATTTCACA+TGG | - | chr6.3:36867800-36867819 | MS.gene80516:CDS | 20.0% |
| ! | ATAAATTACCAGATTTGCAT+GGG | - | chr6.3:36866015-36866034 | MS.gene80516:intron | 25.0% |
| ! | ATGACTGAAGTTATAAACTT+GGG | - | chr6.3:36868165-36868184 | MS.gene80516:intron | 25.0% |
| ! | CATAATTTACTTGCATAGTA+TGG | + | chr6.3:36866874-36866893 | None:intergenic | 25.0% |
| ! | CATACTATGCAAGTAAATTA+TGG | - | chr6.3:36866872-36866891 | MS.gene80516:CDS | 25.0% |
| ! | CTAAAAAATTCAACACGAAA+CGG | + | chr6.3:36864847-36864866 | None:intergenic | 25.0% |
| ! | CTTGTCTATTATAGCAAAAA+AGG | - | chr6.3:36866905-36866924 | MS.gene80516:CDS | 25.0% |
| ! | CTTTGATATGTATGAATCAA+TGG | - | chr6.3:36865402-36865421 | MS.gene80516:intron | 25.0% |
| ! | GAATAATATCTTCTGACTTA+CGG | + | chr6.3:36867770-36867789 | None:intergenic | 25.0% |
| ! | GAATTGTGTAATATAAGTGA+AGG | + | chr6.3:36866315-36866334 | None:intergenic | 25.0% |
| ! | GATTATTTAATGTCTGCATT+TGG | - | chr6.3:36867097-36867116 | MS.gene80516:intron | 25.0% |
| ! | GCATATATTCAAACATTCTA+CGG | + | chr6.3:36865335-36865354 | None:intergenic | 25.0% |
| ! | GTTCATCATAAGATAGAAAA+TGG | - | chr6.3:36866595-36866614 | MS.gene80516:intron | 25.0% |
| ! | TAAAAATAGTGTGCATGATT+TGG | - | chr6.3:36866627-36866646 | MS.gene80516:intron | 25.0% |
| ! | TAACTTTATTAGTCCATTCA+TGG | + | chr6.3:36865753-36865772 | None:intergenic | 25.0% |
| ! | TACATATCAAAGAAAAGTAG+TGG | + | chr6.3:36865394-36865413 | None:intergenic | 25.0% |
| ! | TAGAGGAAATTATATGTACT+AGG | - | chr6.3:36866519-36866538 | MS.gene80516:intron | 25.0% |
| ! | TATAAATTACCAGATTTGCA+TGG | - | chr6.3:36866014-36866033 | MS.gene80516:intron | 25.0% |
| ! | TCAGTTGCAATTTATATGAA+AGG | + | chr6.3:36865535-36865554 | None:intergenic | 25.0% |
| ! | TGCTATAATAGACAAGTAAA+AGG | + | chr6.3:36866901-36866920 | None:intergenic | 25.0% |
| !! | AATAGACTTTTCAATGGAAT+TGG | - | chr6.3:36865501-36865520 | MS.gene80516:intron | 25.0% |
| !! | ACTTACTCTTTAAGAATCTT+TGG | + | chr6.3:36866951-36866970 | None:intergenic | 25.0% |
| !! | ATGGACTAATAAAGTTAAGT+GGG | - | chr6.3:36865756-36865775 | MS.gene80516:intron | 25.0% |
| !! | GATGATAATAGACTTTTCAA+TGG | - | chr6.3:36865495-36865514 | MS.gene80516:intron | 25.0% |
| !! | TCAACAAGTTTGCAATATTT+TGG | + | chr6.3:36867579-36867598 | None:intergenic | 25.0% |
| !! | TTTTATTCCATGTTTGTTTC+AGG | + | chr6.3:36866116-36866135 | None:intergenic | 25.0% |
| !! | TTTTCAATGGAATTGGAAAA+AGG | - | chr6.3:36865508-36865527 | MS.gene80516:intron | 25.0% |
| !!! | AAATATCTTTTATTTGCGTG+TGG | - | chr6.3:36865937-36865956 | MS.gene80516:intron | 25.0% |
| !!! | AAGTTTTATAGAACTACTTG+TGG | - | chr6.3:36864595-36864614 | MS.gene80516:intron | 25.0% |
| !!! | AATATCTTTTATTTGCGTGT+GGG | - | chr6.3:36865938-36865957 | MS.gene80516:intron | 25.0% |
| !!! | AATGGACTAATAAAGTTAAG+TGG | - | chr6.3:36865755-36865774 | MS.gene80516:intron | 25.0% |
| !!! | ATACATGCATTTTTTGTGAA+AGG | - | chr6.3:36867230-36867249 | MS.gene80516:intron | 25.0% |
| !!! | TCAATCTTGAATTTTAGGTA+AGG | + | chr6.3:36864220-36864239 | None:intergenic | 25.0% |
| !!! | TTTCCTTTTGGAATTTTAAC+AGG | - | chr6.3:36867478-36867497 | MS.gene80516:intron | 25.0% |
| !!! | TTTGTTTTGTGAAATTTGCT+TGG | - | chr6.3:36866549-36866568 | MS.gene80516:intron | 25.0% |
| !!! | TTTTTAGGTTGTGTTTGATA+AGG | - | chr6.3:36864860-36864879 | MS.gene80516:intron | 25.0% |
| AACAAGAGGAAAATTCTACA+GGG | - | chr6.3:36867294-36867313 | MS.gene80516:intron | 30.0% | |
| ATAATCCAACAATCGAATTG+AGG | + | chr6.3:36867083-36867102 | None:intergenic | 30.0% | |
| ATCTTATGATGAACATCTAG+TGG | + | chr6.3:36866589-36866608 | None:intergenic | 30.0% | |
| CAATCTACGAAAAAGAGAAA+AGG | + | chr6.3:36865028-36865047 | None:intergenic | 30.0% | |
| CATTTGTTTGACAAGAACTT+TGG | + | chr6.3:36867838-36867857 | None:intergenic | 30.0% | |
| CTTATTAGCTCAGATATCAA+AGG | + | chr6.3:36868003-36868022 | None:intergenic | 30.0% | |
| CTTGAGCATATTAATGGAAA+AGG | - | chr6.3:36864891-36864910 | MS.gene80516:CDS | 30.0% | |
| GAAAATTATCTTGCTTGGAA+TGG | - | chr6.3:36866267-36866286 | MS.gene80516:intron | 30.0% | |
| GAAATGAATAACCTTAGAGA+GGG | + | chr6.3:36864484-36864503 | None:intergenic | 30.0% | |
| GAGAACTATTATGACATGAA+GGG | - | chr6.3:36867500-36867519 | MS.gene80516:intron | 30.0% | |
| GATGACTGAAGTTATAAACT+TGG | - | chr6.3:36868164-36868183 | MS.gene80516:intron | 30.0% | |
| GTATATAGTACATCCATAGT+AGG | - | chr6.3:36866671-36866690 | MS.gene80516:CDS | 30.0% | |
| TAAAAAAAGCTTCAGCAGTA+AGG | + | chr6.3:36866047-36866066 | None:intergenic | 30.0% | |
| TATACAAAGCAAGTGAATGA+GGG | - | chr6.3:36867257-36867276 | MS.gene80516:intron | 30.0% | |
| TCTCCTGTTAAAATTCCAAA+AGG | + | chr6.3:36867484-36867503 | None:intergenic | 30.0% | |
| TGAAATGAATAACCTTAGAG+AGG | + | chr6.3:36864485-36864504 | None:intergenic | 30.0% | |
| TGGACTAATAAAGTTAAGTG+GGG | - | chr6.3:36865757-36865776 | MS.gene80516:intron | 30.0% | |
| ! | AAGAAGCATAAGAGAAAGAA+CGG | + | chr6.3:36864347-36864366 | None:intergenic | 30.0% |
| ! | AATTTCGTATTGACCTACTA+TGG | + | chr6.3:36866687-36866706 | None:intergenic | 30.0% |
| ! | ATAGTACTGGAGATTATGTT+TGG | - | chr6.3:36865223-36865242 | MS.gene80516:CDS | 30.0% |
| ! | CATCTAAAATGTAAACTACC+AGG | + | chr6.3:36865479-36865498 | None:intergenic | 30.0% |
| ! | CGAAAAAGAGAAAAGGATTT+TGG | + | chr6.3:36865021-36865040 | None:intergenic | 30.0% |
| ! | GTTTTGTCCTAAAATCGTTT+TGG | - | chr6.3:36867729-36867748 | MS.gene80516:CDS | 30.0% |
| ! | TTAGCTTGATTCAAAGAGAT+TGG | - | chr6.3:36866202-36866221 | MS.gene80516:intron | 30.0% |
| !! | TCAAAGAGATTGGTTTCATA+TGG | - | chr6.3:36866212-36866231 | MS.gene80516:intron | 30.0% |
| !!! | CGTTTCGTGTTGAATTTTTT+AGG | - | chr6.3:36864845-36864864 | MS.gene80516:intron | 30.0% |
| !!! | GGTGTGATTTTTTGTTATGA+TGG | - | chr6.3:36867443-36867462 | MS.gene80516:intron | 30.0% |
| AACAAATAGTTGTCGCATCA+AGG | + | chr6.3:36864808-36864827 | None:intergenic | 35.0% | |
| ACAAGAGGAAAATTCTACAG+GGG | - | chr6.3:36867295-36867314 | MS.gene80516:intron | 35.0% | |
| ACTCTAACCTGAAACAAACA+TGG | - | chr6.3:36866106-36866125 | MS.gene80516:intron | 35.0% | |
| ACTTCAGTCATCTATACCTT+CGG | + | chr6.3:36868156-36868175 | None:intergenic | 35.0% | |
| AGAAGAAGAACATCAACAAG+AGG | - | chr6.3:36867280-36867299 | MS.gene80516:intron | 35.0% | |
| AGGTTGTGTTTGATAAGGAT+GGG | - | chr6.3:36864865-36864884 | MS.gene80516:CDS | 35.0% | |
| ATCACGTTAGAGAAGACAAT+AGG | - | chr6.3:36866241-36866260 | MS.gene80516:intron | 35.0% | |
| ATCGATCCAAGATGCTAAAT+CGG | - | chr6.3:36864188-36864207 | MS.gene80516:CDS | 35.0% | |
| ATTAGTCCATTCATGGAAAC+TGG | + | chr6.3:36865746-36865765 | None:intergenic | 35.0% | |
| ATTATCTTGCTTGGAATGGA+AGG | - | chr6.3:36866271-36866290 | MS.gene80516:intron | 35.0% | |
| ATTGTAGTGTGATGAATTCG+TGG | - | chr6.3:36864666-36864685 | MS.gene80516:intron | 35.0% | |
| CAACAAGAGGAAAATTCTAC+AGG | - | chr6.3:36867293-36867312 | MS.gene80516:intron | 35.0% | |
| CCTGTACAATAGAAGAATGA+AGG | + | chr6.3:36865841-36865860 | None:intergenic | 35.0% | |
| CCTTCATTCTTCTATTGTAC+AGG | - | chr6.3:36865838-36865857 | MS.gene80516:intron | 35.0% | |
| CTATACAAAGCAAGTGAATG+AGG | - | chr6.3:36867256-36867275 | MS.gene80516:intron | 35.0% | |
| GAACGAAAATTGAGAATGTG+AGG | + | chr6.3:36865872-36865891 | None:intergenic | 35.0% | |
| GAATGAAGGTAAAAGTTGTG+AGG | + | chr6.3:36865827-36865846 | None:intergenic | 35.0% | |
| GAATGTTTAACAGTCTCTCA+GGG | + | chr6.3:36868095-36868114 | None:intergenic | 35.0% | |
| GACATCTATCAAGATATCTG+AGG | - | chr6.3:36864944-36864963 | MS.gene80516:CDS | 35.0% | |
| GGAGAACTATTATGACATGA+AGG | - | chr6.3:36867499-36867518 | MS.gene80516:intron | 35.0% | |
| GGATATCTTGCAGTTATTAG+AGG | - | chr6.3:36867371-36867390 | MS.gene80516:intron | 35.0% | |
| GGGAAATTATTCTTTGTGCT+AGG | - | chr6.3:36867924-36867943 | MS.gene80516:intron | 35.0% | |
| TACTGAAATGTCTGTGTCTA+TGG | - | chr6.3:36865901-36865920 | MS.gene80516:intron | 35.0% | |
| TAGGTTGTGTTTGATAAGGA+TGG | - | chr6.3:36864864-36864883 | MS.gene80516:CDS | 35.0% | |
| TCAATGCTATAAGCATAACC+TGG | - | chr6.3:36865458-36865477 | MS.gene80516:intron | 35.0% | |
| TCACGTTAGAGAAGACAATA+GGG | - | chr6.3:36866242-36866261 | MS.gene80516:intron | 35.0% | |
| TCATATGTATGACACACGTT+TGG | + | chr6.3:36867166-36867185 | None:intergenic | 35.0% | |
| TGAATGTTTAACAGTCTCTC+AGG | + | chr6.3:36868096-36868115 | None:intergenic | 35.0% | |
| TGTTGAGAAGTCTATAGTAC+TGG | - | chr6.3:36865210-36865229 | MS.gene80516:CDS | 35.0% | |
| TTGGAAAAAAACCCTCTCTA+AGG | - | chr6.3:36864470-36864489 | MS.gene80516:intron | 35.0% | |
| TTTGGATCAATCCAACTATG+AGG | - | chr6.3:36867115-36867134 | MS.gene80516:intron | 35.0% | |
| ! | AGGCAAATATTGTGCTACTA+TGG | - | chr6.3:36866925-36866944 | MS.gene80516:intron | 35.0% |
| ! | TCTTTGGCCAAAACGATTTT+AGG | + | chr6.3:36867739-36867758 | None:intergenic | 35.0% |
| !! | CAACTGCTACTTCGTTTTTA+GGG | - | chr6.3:36864291-36864310 | MS.gene80516:intron | 35.0% |
| !! | TCAACTGCTACTTCGTTTTT+AGG | - | chr6.3:36864290-36864309 | MS.gene80516:intron | 35.0% |
| !! | TTGCAGTTATTAGAGGCATT+AGG | - | chr6.3:36867378-36867397 | MS.gene80516:intron | 35.0% |
| AAACCTGCGAGAGTAGAATT+AGG | + | chr6.3:36866983-36867002 | None:intergenic | 40.0% | |
| AAGAGAAAGAACGGTGATCT+AGG | + | chr6.3:36864338-36864357 | None:intergenic | 40.0% | |
| AAGATCAGTCTGCTTTCTAC+AGG | - | chr6.3:36865555-36865574 | MS.gene80516:intron | 40.0% | |
| ACTTACGGCCTGATTATCTT+TGG | + | chr6.3:36867755-36867774 | None:intergenic | 40.0% | |
| AGAGAAAGAACGGTGATCTA+GGG | + | chr6.3:36864337-36864356 | None:intergenic | 40.0% | |
| CATCTTGGATCGATTGAACA+AGG | + | chr6.3:36864182-36864201 | None:intergenic | 40.0% | |
| CCAACTAGCTCAATTCTGTA+AGG | + | chr6.3:36867338-36867357 | None:intergenic | 40.0% | |
| CCTAGACTATGTGTAGACAT+CGG | - | chr6.3:36866383-36866402 | MS.gene80516:intron | 40.0% | |
| CCTTACAGAATTGAGCTAGT+TGG | - | chr6.3:36867335-36867354 | MS.gene80516:intron | 40.0% | |
| CTACAGGCAATCAAAGCAAA+AGG | - | chr6.3:36865571-36865590 | MS.gene80516:intron | 40.0% | |
| CTCTATTGAATCTGCAGAAG+CGG | - | chr6.3:36868248-36868267 | MS.gene80516:intron | 40.0% | |
| CTGGAGATTATGTTTGGATG+AGG | - | chr6.3:36865229-36865248 | MS.gene80516:CDS | 40.0% | |
| GAAGTTCCAGTTTCCATGAA+TGG | - | chr6.3:36865737-36865756 | MS.gene80516:intron | 40.0% | |
| GCCACAAATTACATTGTCTC+CGG | + | chr6.3:36865671-36865690 | None:intergenic | 40.0% | |
| GGGCAGAAAATTATCTTGCT+TGG | - | chr6.3:36866262-36866281 | MS.gene80516:intron | 40.0% | |
| GGGGTTCTTGAGCATATTAA+TGG | - | chr6.3:36864885-36864904 | MS.gene80516:CDS | 40.0% | |
| GGTTGTGTTTGATAAGGATG+GGG | - | chr6.3:36864866-36864885 | MS.gene80516:CDS | 40.0% | |
| TATGGTGCAATGCAAATGAG+TGG | - | chr6.3:36866354-36866373 | MS.gene80516:intron | 40.0% | |
| TGGAAACTGGAACTTCTGAT+TGG | + | chr6.3:36865733-36865752 | None:intergenic | 40.0% | |
| TGTGATGAATTCGTGGAACA+TGG | - | chr6.3:36864673-36864692 | MS.gene80516:intron | 40.0% | |
| TTTGCAAGACTCATGCATAC+AGG | + | chr6.3:36867194-36867213 | None:intergenic | 40.0% | |
| ! | CAACTAGTTATACTTGCTGC+CGG | - | chr6.3:36865649-36865668 | MS.gene80516:intron | 40.0% |
| ! | GAGACAATGTAATTTGTGGC+AGG | - | chr6.3:36865671-36865690 | MS.gene80516:intron | 40.0% |
| ! | TGAAGACCGATTTAGCATCT+TGG | + | chr6.3:36864197-36864216 | None:intergenic | 40.0% |
| ! | TTGTAGCTCTGCTTCTGTTA+GGG | + | chr6.3:36868281-36868300 | None:intergenic | 40.0% |
| !! | CGTTTTGGCCAAAGATAATC+AGG | - | chr6.3:36867744-36867763 | MS.gene80516:CDS | 40.0% |
| !!! | GTTGCTCCTGTTTTTACCTT+TGG | + | chr6.3:36867642-36867661 | None:intergenic | 40.0% |
| AAACAGTGACCATGAAGCCA+TGG | + | chr6.3:36864452-36864471 | None:intergenic | 45.0% | |
| ACGCACCTCAATTCGATTGT+TGG | - | chr6.3:36867075-36867094 | MS.gene80516:intron | 45.0% | |
| AGCAAGAAACCTGCAGAAGA+TGG | - | chr6.3:36865625-36865644 | MS.gene80516:intron | 45.0% | |
| AGTACTGCTTCAAGAAGTCG+AGG | - | chr6.3:36868300-36868319 | MS.gene80516:intron | 45.0% | |
| ATCTGATCCTGCAGTTGCTT+TGG | - | chr6.3:36864759-36864778 | MS.gene80516:intron | 45.0% | |
| ATGGCTTCATGGTCACTGTT+TGG | - | chr6.3:36864451-36864470 | MS.gene80516:intron | 45.0% | |
| ATGTCAGGTAGAGATTCTGC+TGG | + | chr6.3:36864393-36864412 | None:intergenic | 45.0% | |
| CAAGACTCATGCATACAGGA+TGG | + | chr6.3:36867190-36867209 | None:intergenic | 45.0% | |
| CAAGGAATTTCTGCGAAGTG+CGG | + | chr6.3:36864164-36864183 | None:intergenic | 45.0% | |
| CAGGCAATCAAAGCAAAAGG+TGG | - | chr6.3:36865574-36865593 | MS.gene80516:intron | 45.0% | |
| CATCCTAATTCTACTCTCGC+AGG | - | chr6.3:36866977-36866996 | MS.gene80516:intron | 45.0% | |
| CATCGATCGATATGGACACA+TGG | - | chr6.3:36866784-36866803 | MS.gene80516:CDS | 45.0% | |
| CATTTCTTGACAACAGCTGC+AGG | + | chr6.3:36864718-36864737 | None:intergenic | 45.0% | |
| CCGATGTCTACACATAGTCT+AGG | + | chr6.3:36866386-36866405 | None:intergenic | 45.0% | |
| CGCTTCTGCAGATTCAATAG+AGG | + | chr6.3:36868250-36868269 | None:intergenic | 45.0% | |
| CGGCAGCAAGTATAACTAGT+TGG | + | chr6.3:36865651-36865670 | None:intergenic | 45.0% | |
| CTCTATTGCACAGATGCTGT+TGG | - | chr6.3:36867609-36867628 | MS.gene80516:CDS | 45.0% | |
| CTGCGAGAGTAGAATTAGGA+TGG | + | chr6.3:36866979-36866998 | None:intergenic | 45.0% | |
| CTTCCTTGAAGCTCCTGTTT+CGG | - | chr6.3:36865600-36865619 | MS.gene80516:intron | 45.0% | |
| GAGTCGAGATCAAAGATGTC+AGG | + | chr6.3:36864408-36864427 | None:intergenic | 45.0% | |
| GCCGGAGACAATGTAATTTG+TGG | - | chr6.3:36865667-36865686 | MS.gene80516:intron | 45.0% | |
| GGAAGAGAAAAGTCGTTAGC+TGG | - | chr6.3:36868321-36868340 | MS.gene80516:intron | 45.0% | |
| GGTCCACCAAAGGTAAAAAC+AGG | - | chr6.3:36867633-36867652 | MS.gene80516:intron | 45.0% | |
| GTGTCCATATCGATCGATGA+TGG | + | chr6.3:36866783-36866802 | None:intergenic | 45.0% | |
| TATAAACTTGGGTCTGCAGC+AGG | - | chr6.3:36868176-36868195 | MS.gene80516:intron | 45.0% | |
| TATGACATGAAGGGCAGTGA+GGG | - | chr6.3:36867509-36867528 | MS.gene80516:intron | 45.0% | |
| TATTGCACAGATGCTGTTGG+TGG | - | chr6.3:36867612-36867631 | MS.gene80516:CDS | 45.0% | |
| TCAATCAACCTTCTACGCCA+TGG | - | chr6.3:36864432-36864451 | MS.gene80516:intron | 45.0% | |
| TTATGACATGAAGGGCAGTG+AGG | - | chr6.3:36867508-36867527 | MS.gene80516:intron | 45.0% | |
| TTCCTTGAAGCTCCTGTTTC+GGG | - | chr6.3:36865601-36865620 | MS.gene80516:intron | 45.0% | |
| ! | CAGAATTGAGCTAGTTGGTG+TGG | - | chr6.3:36867340-36867359 | MS.gene80516:intron | 45.0% |
| ! | CTAGTTGGTGTGGTTTGTGA+TGG | - | chr6.3:36867350-36867369 | MS.gene80516:intron | 45.0% |
| ! | CTTGTAGCTCTGCTTCTGTT+AGG | + | chr6.3:36868282-36868301 | None:intergenic | 45.0% |
| ! | GTCGTTAGCTGGTAATGAAG+AGG | - | chr6.3:36868332-36868351 | MS.gene80516:CDS | 45.0% |
| !! | AGTCTCTCAGGGTTGATACA+TGG | + | chr6.3:36868084-36868103 | None:intergenic | 45.0% |
| !! | GCAAACTTGTTGACAGTGCT+AGG | - | chr6.3:36867586-36867605 | MS.gene80516:CDS | 45.0% |
| !!! | GCTCCTGTTTTTACCTTTGG+TGG | + | chr6.3:36867639-36867658 | None:intergenic | 45.0% |
| !!! | TTTTATTTTATTTTTTTTAG+AGG | - | chr6.3:36866502-36866521 | MS.gene80516:intron | 5.0% |
| ACTAGTTGGCCATCTTCTGC+AGG | + | chr6.3:36865637-36865656 | None:intergenic | 50.0% | |
| ATCCAACTATGAGGTGCAGC+TGG | - | chr6.3:36867124-36867143 | MS.gene80516:intron | 50.0% | |
| CCTGCCATCATCGATCGATA+TGG | - | chr6.3:36866776-36866795 | MS.gene80516:CDS | 50.0% | |
| GGCAATTGCCCATGCAAATC+TGG | + | chr6.3:36866026-36866045 | None:intergenic | 50.0% | |
| GGTTTCTTGCTACCCGAAAC+AGG | + | chr6.3:36865616-36865635 | None:intergenic | 50.0% | |
| GTGGAACATGGTGCTTCAGT+TGG | - | chr6.3:36864685-36864704 | MS.gene80516:intron | 50.0% | |
| TACCCGAAACAGGAGCTTCA+AGG | + | chr6.3:36865606-36865625 | None:intergenic | 50.0% | |
| ! | CCATATCGATCGATGATGGC+AGG | + | chr6.3:36866779-36866798 | None:intergenic | 50.0% |
| ! | TGATCCTGCAGTTGCTTTGG+CGG | - | chr6.3:36864762-36864781 | MS.gene80516:intron | 50.0% |
| CCATGAAGCCATGGCGTAGA+AGG | + | chr6.3:36864443-36864462 | None:intergenic | 55.0% | |
| CCTTCTACGCCATGGCTTCA+TGG | - | chr6.3:36864440-36864459 | MS.gene80516:intron | 55.0% | |
| CTCCAGCTGCACCTCATAGT+TGG | + | chr6.3:36867129-36867148 | None:intergenic | 55.0% | |
| !! | TGCTGTTGGTGGTCCACCAA+AGG | - | chr6.3:36867623-36867642 | MS.gene80516:intron | 55.0% |
| CTGACCGCCAAAGCAACTGC+AGG | + | chr6.3:36864769-36864788 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 36864146 | 36868362 | 36864146 | ID=MS.gene80516 |
| chr6.3 | mRNA | 36864146 | 36868362 | 36864146 | ID=MS.gene80516.t1;Parent=MS.gene80516 |
| chr6.3 | exon | 36868326 | 36868362 | 36868326 | ID=MS.gene80516.t1.exon1;Parent=MS.gene80516.t1 |
| chr6.3 | CDS | 36868326 | 36868362 | 36868326 | ID=cds.MS.gene80516.t1;Parent=MS.gene80516.t1 |
| chr6.3 | exon | 36868017 | 36868120 | 36868017 | ID=MS.gene80516.t1.exon2;Parent=MS.gene80516.t1 |
| chr6.3 | CDS | 36868017 | 36868120 | 36868017 | ID=cds.MS.gene80516.t1;Parent=MS.gene80516.t1 |
| chr6.3 | exon | 36867725 | 36867835 | 36867725 | ID=MS.gene80516.t1.exon3;Parent=MS.gene80516.t1 |
| chr6.3 | CDS | 36867725 | 36867835 | 36867725 | ID=cds.MS.gene80516.t1;Parent=MS.gene80516.t1 |
| chr6.3 | exon | 36867543 | 36867641 | 36867543 | ID=MS.gene80516.t1.exon4;Parent=MS.gene80516.t1 |
| chr6.3 | CDS | 36867543 | 36867641 | 36867543 | ID=cds.MS.gene80516.t1;Parent=MS.gene80516.t1 |
| chr6.3 | exon | 36866649 | 36866931 | 36866649 | ID=MS.gene80516.t1.exon5;Parent=MS.gene80516.t1 |
| chr6.3 | CDS | 36866649 | 36866931 | 36866649 | ID=cds.MS.gene80516.t1;Parent=MS.gene80516.t1 |
| chr6.3 | exon | 36865109 | 36865256 | 36865109 | ID=MS.gene80516.t1.exon6;Parent=MS.gene80516.t1 |
| chr6.3 | CDS | 36865109 | 36865256 | 36865109 | ID=cds.MS.gene80516.t1;Parent=MS.gene80516.t1 |
| chr6.3 | exon | 36864864 | 36864987 | 36864864 | ID=MS.gene80516.t1.exon7;Parent=MS.gene80516.t1 |
| chr6.3 | CDS | 36864864 | 36864987 | 36864864 | ID=cds.MS.gene80516.t1;Parent=MS.gene80516.t1 |
| chr6.3 | exon | 36864146 | 36864271 | 36864146 | ID=MS.gene80516.t1.exon8;Parent=MS.gene80516.t1 |
| chr6.3 | CDS | 36864146 | 36864271 | 36864146 | ID=cds.MS.gene80516.t1;Parent=MS.gene80516.t1 |
| Gene Sequence |
| Protein sequence |
