AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056142


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056142.t1 MTR_8g028120 96.000 125 5 0 26 150 14 138 8.29e-81 247
MS.gene056142.t1 MTR_1g075200 88.660 97 3 2 213 302 344 439 2.91e-50 174
MS.gene056142.t1 MTR_1g475250 88.660 97 3 2 213 302 344 439 2.91e-50 174
MS.gene056142.t1 MTR_1g075260 70.707 99 21 2 211 302 317 414 2.91e-36 136
MS.gene056142.t1 MTR_1g075260 70.707 99 21 2 211 302 341 438 4.43e-36 136
MS.gene056142.t1 MTR_2g099910 54.400 125 56 1 27 150 60 184 4.79e-36 130
MS.gene056142.t1 MTR_2g099910 54.400 125 56 1 27 150 60 184 7.82e-36 130
MS.gene056142.t1 MTR_2g099910 54.400 125 56 1 27 150 60 184 2.87e-35 131
MS.gene056142.t1 MTR_1g075250 67.677 99 14 2 211 302 337 424 1.57e-34 132
MS.gene056142.t1 MTR_1g070385 61.628 86 24 2 224 302 637 720 1.29e-24 105
MS.gene056142.t1 MTR_7g096300 55.556 99 30 2 211 302 582 673 1.41e-24 104
MS.gene056142.t1 MTR_1g475250 86.792 53 6 1 213 265 344 395 1.14e-22 98.2
MS.gene056142.t1 MTR_8g102470 32.609 138 91 2 26 161 49 186 2.76e-16 79.0
MS.gene056142.t1 MTR_8g102470 29.630 162 109 3 26 182 25 186 3.69e-16 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056142.t1 AT3G25530 78.295 129 27 1 26 153 14 142 2.71e-66 207
MS.gene056142.t1 AT3G25530 78.295 129 27 1 26 153 14 142 2.49e-65 207
MS.gene056142.t1 AT3G25530 71.094 128 27 1 26 153 14 131 8.33e-57 185
MS.gene056142.t1 AT1G17650 56.000 125 54 1 27 150 22 146 1.65e-35 130
MS.gene056142.t1 AT1G17650 55.556 126 55 1 27 151 81 206 2.34e-35 132
MS.gene056142.t1 AT1G04280 70.513 78 16 1 232 302 322 399 5.25e-29 116
MS.gene056142.t1 AT1G04280 70.513 78 16 1 232 302 376 453 1.08e-28 116
MS.gene056142.t1 AT1G06750 59.596 99 26 3 211 302 340 431 2.17e-27 112
MS.gene056142.t1 AT1G06750 59.596 99 26 3 211 302 340 431 2.17e-27 112
MS.gene056142.t1 AT1G06750 59.596 99 26 3 211 302 347 438 2.21e-27 112
MS.gene056142.t1 AT2G30630 59.794 97 25 3 213 302 356 445 2.00e-26 109
MS.gene056142.t1 AT2G30630 59.794 97 25 3 213 302 377 466 2.12e-26 109
MS.gene056142.t1 AT4G29120 29.630 162 109 3 26 182 51 212 2.87e-14 72.8

Find 71 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACAAGTTTGCAATATTT+TGG 0.119289 7.3:+54511965 None:intergenic
TTCCTTGAAGCTCCTGTTTC+GGG 0.242809 7.3:-54513938 MS.gene056142:CDS
CTTGTAGCTCTGCTTCTGTT+AGG 0.288048 7.3:+54511261 None:intergenic
TAACTTTATTAGTCCATTCA+TGG 0.293732 7.3:+54513789 None:intergenic
CTTCCTTGAAGCTCCTGTTT+CGG 0.308871 7.3:-54513939 MS.gene056142:CDS
ATTAGTCCATTCATGGAAAC+TGG 0.310723 7.3:+54513796 None:intergenic
CCTTCTACGCCATGGCTTCA+TGG 0.327105 7.3:-54515099 MS.gene056142:CDS
GGGGTTCTTGAGCATATTAA+TGG 0.347197 7.3:-54514654 MS.gene056142:CDS
TAGGTTGTGTTTGATAAGGA+TGG 0.366826 7.3:-54514675 MS.gene056142:CDS
ATCTGATCCTGCAGTTGCTT+TGG 0.374621 7.3:-54514780 MS.gene056142:CDS
ATGGCTTCATGGTCACTGTT+TGG 0.378160 7.3:-54515088 MS.gene056142:CDS
TTGGAACAGAACCCTCTCTA+AGG 0.382938 7.3:-54515069 MS.gene056142:intron
GAAGTTCCAGTTTCCATGAA+TGG 0.383498 7.3:-54513802 MS.gene056142:CDS
CTTGAGCATATTAATGGAAA+AGG 0.405372 7.3:-54514648 MS.gene056142:CDS
GGATATCTTGCAGTTATTAG+AGG 0.406489 7.3:-54512170 MS.gene056142:CDS
GGTTTCTTGCTACCCGAAAC+AGG 0.408958 7.3:+54513926 None:intergenic
CCTTCATTCTTCTATTGTAC+AGG 0.410131 7.3:-54513701 MS.gene056142:intron
CCATGAAGCCATGGCGTAGA+AGG 0.420998 7.3:+54515099 None:intergenic
CATTTCTTGACAACAGCTGC+AGG 0.421749 7.3:+54514824 None:intergenic
TTGCAGTTATTAGAGGCATT+AGG 0.422529 7.3:-54512163 MS.gene056142:intron
TTGTAGCTCTGCTTCTGTTA+GGG 0.423721 7.3:+54511262 None:intergenic
TGGAAACTGGAACTTCTGAT+TGG 0.429237 7.3:+54513809 None:intergenic
AGGTTGTGTTTGATAAGGAT+GGG 0.430243 7.3:-54514674 MS.gene056142:CDS
CAACAAGAGGAAAATTCTAC+AGG 0.441415 7.3:-54512248 MS.gene056142:CDS
TGATCCTGCAGTTGCTTTGG+CGG 0.453584 7.3:-54514777 MS.gene056142:intron
AATGGACTAATAAAGTTAAG+TGG 0.471280 7.3:-54513784 MS.gene056142:CDS
ACTAGTTGGCCATCTTCTGC+AGG 0.480199 7.3:+54513905 None:intergenic
ATGGACTAATAAAGTTAAGT+GGG 0.489288 7.3:-54513783 MS.gene056142:CDS
GTGGAACATGGTGCTTCAGT+TGG 0.499862 7.3:-54514854 MS.gene056142:CDS
TACCCGAAACAGGAGCTTCA+AGG 0.501374 7.3:+54513936 None:intergenic
GGTTGTGTTTGATAAGGATG+GGG 0.501563 7.3:-54514673 MS.gene056142:CDS
GCAAACTTGTTGACAGTGCT+AGG 0.509508 7.3:-54511955 MS.gene056142:CDS
CTAGTTGGTGTGGTTTGTGA+TGG 0.513280 7.3:-54512191 MS.gene056142:CDS
CTATACAAAGCAAGTGAATG+AGG 0.513355 7.3:-54512285 MS.gene056142:CDS
TGAAATGAATAACCTTAGAG+AGG 0.515209 7.3:+54515057 None:intergenic
GAGACAATGTAATTTGTGGC+AGG 0.517896 7.3:-54513868 MS.gene056142:CDS
GCCACAAATTACATTGTCTC+CGG 0.519602 7.3:+54513871 None:intergenic
CTACAGGCAATCAAAGCAAA+AGG 0.523095 7.3:-54513968 MS.gene056142:intron
CCAACTAGCTCAATTCTGTA+AGG 0.525410 7.3:+54512206 None:intergenic
CCTTACAGAATTGAGCTAGT+TGG 0.526663 7.3:-54512206 MS.gene056142:CDS
GAGTCGAGATCAAAGATGTC+AGG 0.526710 7.3:+54515134 None:intergenic
CGGCAGCAAGTATAACTAGT+TGG 0.527224 7.3:+54513891 None:intergenic
CCTGTACAATAGAAGAATGA+AGG 0.527437 7.3:+54513701 None:intergenic
CAGAATTGAGCTAGTTGGTG+TGG 0.527716 7.3:-54512201 MS.gene056142:CDS
CTCTATTGCACAGATGCTGT+TGG 0.532305 7.3:-54511932 MS.gene056142:CDS
AGCAAGAAACCTGCAGAAGA+TGG 0.534673 7.3:-54513914 MS.gene056142:CDS
TATTGCACAGATGCTGTTGG+TGG 0.536088 7.3:-54511929 MS.gene056142:CDS
AGATATCTTTATAGATGTCT+CGG 0.545189 7.3:+54514599 None:intergenic
ATTGTAGTGTGATGAATTCG+TGG 0.563701 7.3:-54514873 MS.gene056142:intron
TGCTGTTGGTGGTCCACCAA+AGG 0.575982 7.3:-54511918 MS.gene056142:intron
TATGACATGAAGGGCAGTGA+GGG 0.577678 7.3:-54512032 MS.gene056142:intron
TGCGGCGACGAAGATCTCAT+AGG 0.588575 7.3:+54515396 None:intergenic
CAACTAGTTATACTTGCTGC+CGG 0.591719 7.3:-54513890 MS.gene056142:CDS
AGAAGAAGAACATCAACAAG+AGG 0.597156 7.3:-54512261 MS.gene056142:CDS
ATGTCAGGTAGAGATTCTGC+TGG 0.598317 7.3:+54515149 None:intergenic
GCCGGAGACAATGTAATTTG+TGG 0.604038 7.3:-54513872 MS.gene056142:CDS
GAAATGAATAACCTTAGAGA+GGG 0.604564 7.3:+54515058 None:intergenic
AACAAGAGGAAAATTCTACA+GGG 0.606029 7.3:-54512247 MS.gene056142:CDS
TATACAAAGCAAGTGAATGA+GGG 0.610525 7.3:-54512284 MS.gene056142:CDS
CTGACCGCCAAAGCAACTGC+AGG 0.616743 7.3:+54514773 None:intergenic
TCAATCAACCTTCTACGCCA+TGG 0.617297 7.3:-54515107 MS.gene056142:CDS
AAACAGTGACCATGAAGCCA+TGG 0.618588 7.3:+54515090 None:intergenic
TGTGATGAATTCGTGGAACA+TGG 0.633240 7.3:-54514866 MS.gene056142:CDS
TGGACTAATAAAGTTAAGTG+GGG 0.636202 7.3:-54513782 MS.gene056142:CDS
AGTACTGCTTCAAGAAGTCG+AGG 0.646449 7.3:-54511240 MS.gene056142:CDS
CAAGGAATTTCTGCGAAGTG+CGG 0.650590 7.3:+54515378 None:intergenic
GACATCTATAAAGATATCTG+AGG 0.651310 7.3:-54514595 MS.gene056142:intron
GAATGAAGGTAAAAGTTGTG+AGG 0.658798 7.3:+54513715 None:intergenic
CAGGCAATCAAAGCAAAAGG+TGG 0.667806 7.3:-54513965 MS.gene056142:CDS
TTATGACATGAAGGGCAGTG+AGG 0.692934 7.3:-54512033 MS.gene056142:intron
ACAAGAGGAAAATTCTACAG+GGG 0.709176 7.3:-54512246 MS.gene056142:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTACTATATTTATATACTT+TGG - chr7.3:54514494-54514513 MS.gene056142:intron 15.0%
!!! AATGTAAAACATTTTGAATA+AGG + chr7.3:54515053-54515072 None:intergenic 15.0%
!!! ACAACTCAATTTTAAAATTA+AGG - chr7.3:54513229-54513248 MS.gene056142:intron 15.0%
!!! ATTTTAAATAACAGAGTATA+AGG - chr7.3:54513156-54513175 MS.gene056142:intron 15.0%
!!! CTTTTCATTATTGATTTATT+GGG - chr7.3:54514978-54514997 MS.gene056142:intron 15.0%
!!! TATAATTAACATTTTCCTTT+TGG - chr7.3:54514541-54514560 MS.gene056142:intron 15.0%
!!! TTTTAAATAACAGAGTATAA+GGG - chr7.3:54513157-54513176 MS.gene056142:intron 15.0%
!!! TTTTCATTATTGATTTATTG+GGG - chr7.3:54514979-54514998 MS.gene056142:intron 15.0%
!! AAATTCTCGCATATAAAATT+AGG + chr7.3:54512358-54512377 None:intergenic 20.0%
!! ACTATATTTATATACTTTGG+TGG - chr7.3:54514497-54514516 MS.gene056142:intron 20.0%
!! ATAGAGGTAAAATTATTCTA+TGG + chr7.3:54515310-54515329 None:intergenic 20.0%
!! ATATTAATATGTAAGTGCTT+AGG + chr7.3:54513412-54513431 None:intergenic 20.0%
!! CCAATAAATCAATAATGAAA+AGG + chr7.3:54514980-54514999 None:intergenic 20.0%
!! CTTATGTATAATAAGCTATT+TGG + chr7.3:54511613-54511632 None:intergenic 20.0%
!! TAAGCACTTACATATTAATA+TGG - chr7.3:54513411-54513430 MS.gene056142:intron 20.0%
!! TCTTGAATATTCAATCTAAA+TGG - chr7.3:54513889-54513908 MS.gene056142:CDS 20.0%
!! TCTTTCATCTATAACAAAAT+AGG + chr7.3:54513815-54513834 None:intergenic 20.0%
!! TTAAAAACAGAAACTTTCAA+TGG + chr7.3:54512255-54512274 None:intergenic 20.0%
!!! AATCATCAATCTTGAATTTT+AGG + chr7.3:54511302-54511321 None:intergenic 20.0%
!!! ATTGAAAGTTTCTGTTTTTA+AGG - chr7.3:54512254-54512273 MS.gene056142:CDS 20.0%
!!! ATTTTGTTATAGATGAAAGA+AGG - chr7.3:54513815-54513834 MS.gene056142:CDS 20.0%
!!! CCTTTTCATTATTGATTTAT+TGG - chr7.3:54514977-54514996 MS.gene056142:intron 20.0%
!!! GCAAATAAAAGATATTTTCT+TGG + chr7.3:54513011-54513030 None:intergenic 20.0%
!!! GCTTTATTTTCTTCATTATA+AGG - chr7.3:54511327-54511346 MS.gene056142:intron 20.0%
!!! GTATTACTTTCTTTTATACT+TGG - chr7.3:54512775-54512794 MS.gene056142:intron 20.0%
!!! TAAAACATTTTGAATAAGGT+TGG + chr7.3:54515049-54515068 None:intergenic 20.0%
!!! TGCAGTTATTATTTTGAATT+TGG - chr7.3:54512229-54512248 MS.gene056142:CDS 20.0%
!!! TTGTACTTTTTTATTTCACA+TGG - chr7.3:54514875-54514894 MS.gene056142:intron 20.0%
! AGATATCTTTATAGATGTCT+CGG + chr7.3:54512020-54512039 None:intergenic 25.0%
! ATAAATTACCAGATTTGCAT+GGG - chr7.3:54513092-54513111 MS.gene056142:intron 25.0%
! ATGACTGAAGTTATAAACTT+GGG - chr7.3:54515241-54515260 MS.gene056142:intron 25.0%
! CATAATTTACTTGCATAGTA+TGG + chr7.3:54513949-54513968 None:intergenic 25.0%
! CATACTATGCAAGTAAATTA+TGG - chr7.3:54513947-54513966 MS.gene056142:CDS 25.0%
! CTTGTCTATTATAGCAAAAA+AGG - chr7.3:54513980-54513999 MS.gene056142:intron 25.0%
! CTTTGATATGTATGAATCAA+TGG - chr7.3:54512479-54512498 MS.gene056142:intron 25.0%
! GAATAATATCTTCTGACTTA+CGG + chr7.3:54514845-54514864 None:intergenic 25.0%
! GAATTGTGTAATATAAGTGA+AGG + chr7.3:54513390-54513409 None:intergenic 25.0%
! GATTATTTAATGTCTGCATT+TGG - chr7.3:54514172-54514191 MS.gene056142:intron 25.0%
! GCATATATTCAAACATTCTA+CGG + chr7.3:54512412-54512431 None:intergenic 25.0%
! GTTCATCATAAGATAGAAAA+TGG - chr7.3:54513670-54513689 MS.gene056142:intron 25.0%
! TAAAAATAGTGTGCATGATT+TGG - chr7.3:54513702-54513721 MS.gene056142:CDS 25.0%
! TAACTTTATTAGTCCATTCA+TGG + chr7.3:54512830-54512849 None:intergenic 25.0%
! TACATATCAAAGAAAAGTAG+TGG + chr7.3:54512471-54512490 None:intergenic 25.0%
! TATAAATTACCAGATTTGCA+TGG - chr7.3:54513091-54513110 MS.gene056142:intron 25.0%
! TCAGTTGCAATTTATAAGAA+AGG + chr7.3:54512612-54512631 None:intergenic 25.0%
! TGCTATAATAGACAAGTAAA+AGG + chr7.3:54513976-54513995 None:intergenic 25.0%
!! AATAGACTTTTCAATGGAAT+TGG - chr7.3:54512578-54512597 MS.gene056142:intron 25.0%
!! ACTTACTCTTTAAGAATCTT+TGG + chr7.3:54514026-54514045 None:intergenic 25.0%
!! ATGGACTAATAAAGTTAAGT+GGG - chr7.3:54512833-54512852 MS.gene056142:intron 25.0%
!! CATGATAATAGACTTTTCAA+TGG - chr7.3:54512572-54512591 MS.gene056142:intron 25.0%
!! TCAACAAGTTTGCAATATTT+TGG + chr7.3:54514654-54514673 None:intergenic 25.0%
!! TTTTATTCCATGTTTGTTTC+AGG + chr7.3:54513191-54513210 None:intergenic 25.0%
!! TTTTCAATGGAATTGGAAAA+AGG - chr7.3:54512585-54512604 MS.gene056142:intron 25.0%
!!! AAGTTTTATAGAACTACTTG+TGG - chr7.3:54511672-54511691 MS.gene056142:intron 25.0%
!!! AATATCTTTTATTTGCGTGT+TGG - chr7.3:54513015-54513034 MS.gene056142:intron 25.0%
!!! AATGGACTAATAAAGTTAAG+TGG - chr7.3:54512832-54512851 MS.gene056142:intron 25.0%
!!! ATACATGCATTTTTTGTGAA+AGG - chr7.3:54514305-54514324 MS.gene056142:intron 25.0%
!!! TCAATCTTGAATTTTAGGTA+AGG + chr7.3:54511297-54511316 None:intergenic 25.0%
!!! TCTGTTTTGTTAAATTTGCT+TGG - chr7.3:54513624-54513643 MS.gene056142:intron 25.0%
!!! TGTTTCGTGTTGAATTTTTT+AGG - chr7.3:54511922-54511941 MS.gene056142:CDS 25.0%
!!! TTTCCTTTTGGAATTTTAAC+AGG - chr7.3:54514553-54514572 MS.gene056142:intron 25.0%
!!! TTTTTAGGTTGTGTTTGATA+AGG - chr7.3:54511937-54511956 MS.gene056142:CDS 25.0%
AACAAGAGGAAAATTCTACA+GGG - chr7.3:54514369-54514388 MS.gene056142:intron 30.0%
ATAATCCAACAATCGAATTG+AGG + chr7.3:54514158-54514177 None:intergenic 30.0%
ATCTTATGATGAACATCTAG+TGG + chr7.3:54513664-54513683 None:intergenic 30.0%
CAATCTACGAAAAAGAGAAA+AGG + chr7.3:54512105-54512124 None:intergenic 30.0%
CATGTAAAATGTAAACTACC+AGG + chr7.3:54512556-54512575 None:intergenic 30.0%
CATTTGTTTGACAAGAACTT+TGG + chr7.3:54514913-54514932 None:intergenic 30.0%
CTTATTAGCTCAGATATCAA+AGG + chr7.3:54515078-54515097 None:intergenic 30.0%
CTTGAGCATATTAATGGAAA+AGG - chr7.3:54511968-54511987 MS.gene056142:CDS 30.0%
GAAAATTATCTTGCTTGGAA+TGG - chr7.3:54513342-54513361 MS.gene056142:intron 30.0%
GAAATGAATAACCTTAGAGA+GGG + chr7.3:54511561-54511580 None:intergenic 30.0%
GACATCTATAAAGATATCTG+AGG - chr7.3:54512021-54512040 MS.gene056142:CDS 30.0%
GAGAACTATTATGACATGAA+GGG - chr7.3:54514575-54514594 MS.gene056142:intron 30.0%
GATGACTGAAGTTATAAACT+TGG - chr7.3:54515240-54515259 MS.gene056142:intron 30.0%
GTATATAGTACATCCATAGT+AGG - chr7.3:54513746-54513765 MS.gene056142:CDS 30.0%
TAAAAAAAGCTTCAGCAGTA+AGG + chr7.3:54513124-54513143 None:intergenic 30.0%
TAGAGGAAGTTATATGTACT+AGG - chr7.3:54513594-54513613 MS.gene056142:intron 30.0%
TATACAAAGCAAGTGAATGA+GGG - chr7.3:54514332-54514351 MS.gene056142:intron 30.0%
TCTCCTGTTAAAATTCCAAA+AGG + chr7.3:54514559-54514578 None:intergenic 30.0%
TGAAATGAATAACCTTAGAG+AGG + chr7.3:54511562-54511581 None:intergenic 30.0%
TGGACTAATAAAGTTAAGTG+GGG - chr7.3:54512834-54512853 MS.gene056142:intron 30.0%
! AAGAAGCATAAGAGAAAGAA+CGG + chr7.3:54511424-54511443 None:intergenic 30.0%
! ATAGTACTGGAGATTATGTT+TGG - chr7.3:54512300-54512319 MS.gene056142:intron 30.0%
! CGAAAAAGAGAAAAGGATTT+TGG + chr7.3:54512098-54512117 None:intergenic 30.0%
! GTTTTGTCCTAAAATCGTTT+TGG - chr7.3:54514804-54514823 MS.gene056142:CDS 30.0%
! TTAGCTTGATTCAAAGAGAT+TGG - chr7.3:54513277-54513296 MS.gene056142:intron 30.0%
!! TCAAAGAGATTGGTTTCATA+TGG - chr7.3:54513287-54513306 MS.gene056142:intron 30.0%
!!! GGTGTGATTTTTTGTTATGA+TGG - chr7.3:54514518-54514537 MS.gene056142:intron 30.0%
AACAAATAGTTGTCGCATCA+AGG + chr7.3:54511885-54511904 None:intergenic 35.0%
ACAAGAGGAAAATTCTACAG+GGG - chr7.3:54514370-54514389 MS.gene056142:intron 35.0%
ACTCTAACCTGAAACAAACA+TGG - chr7.3:54513181-54513200 MS.gene056142:intron 35.0%
ACTTCAGTCATCTATACCTT+CGG + chr7.3:54515232-54515251 None:intergenic 35.0%
AGAAGAAGAACATCAACAAG+AGG - chr7.3:54514355-54514374 MS.gene056142:intron 35.0%
AGGTTGTGTTTGATAAGGAT+GGG - chr7.3:54511942-54511961 MS.gene056142:CDS 35.0%
ATCACGTTAGAGAAGACAAT+AGG - chr7.3:54513316-54513335 MS.gene056142:intron 35.0%
ATTAGTCCATTCATGGAAAC+TGG + chr7.3:54512823-54512842 None:intergenic 35.0%
ATTATCTTGCTTGGAATGGA+AGG - chr7.3:54513346-54513365 MS.gene056142:intron 35.0%
ATTGTAGTGTGATGAATTCG+TGG - chr7.3:54511743-54511762 MS.gene056142:intron 35.0%
CAACAAGAGGAAAATTCTAC+AGG - chr7.3:54514368-54514387 MS.gene056142:intron 35.0%
CCTGTACAATAGAAGAATGA+AGG + chr7.3:54512918-54512937 None:intergenic 35.0%
CCTTCATTCTTCTATTGTAC+AGG - chr7.3:54512915-54512934 MS.gene056142:intron 35.0%
CTATACAAAGCAAGTGAATG+AGG - chr7.3:54514331-54514350 MS.gene056142:intron 35.0%
GAATGAAGGTAAAAGTTGTG+AGG + chr7.3:54512904-54512923 None:intergenic 35.0%
GAATGTTTAACAGTCTCTCA+GGG + chr7.3:54515170-54515189 None:intergenic 35.0%
GCTAGTTACATACAACTCAT+AGG + chr7.3:54513785-54513804 None:intergenic 35.0%
GGAGAACTATTATGACATGA+AGG - chr7.3:54514574-54514593 MS.gene056142:intron 35.0%
GGATATCTTGCAGTTATTAG+AGG - chr7.3:54514446-54514465 MS.gene056142:intron 35.0%
GGGAAATTATTCTTTGTGCT+AGG - chr7.3:54514999-54515018 MS.gene056142:intron 35.0%
TACTGAAATGTCTGTGTCTA+TGG - chr7.3:54512978-54512997 MS.gene056142:intron 35.0%
TAGGTTGTGTTTGATAAGGA+TGG - chr7.3:54511941-54511960 MS.gene056142:CDS 35.0%
TCAATGCTATAAGCATAACC+TGG - chr7.3:54512535-54512554 MS.gene056142:intron 35.0%
TCACGTTAGAGAAGACAATA+GGG - chr7.3:54513317-54513336 MS.gene056142:intron 35.0%
TCATATGTATGACACACGTT+TGG + chr7.3:54514241-54514260 None:intergenic 35.0%
TGAATGTTTAACAGTCTCTC+AGG + chr7.3:54515171-54515190 None:intergenic 35.0%
TGTTGAGAAGTCTATAGTAC+TGG - chr7.3:54512287-54512306 MS.gene056142:CDS 35.0%
TTACAAACAAGCAGAAGATG+AGG + chr7.3:54513051-54513070 None:intergenic 35.0%
TTTGGATCAATCCAACTATG+AGG - chr7.3:54514190-54514209 MS.gene056142:intron 35.0%
! AATTTCGCATTGACCTACTA+TGG + chr7.3:54513762-54513781 None:intergenic 35.0%
! AGGCAAATATTGTGCTACTA+TGG - chr7.3:54514000-54514019 MS.gene056142:intron 35.0%
! TCTTTGGCCAAAACGATTTT+AGG + chr7.3:54514814-54514833 None:intergenic 35.0%
!! CAACTGCTACTTCGTTTTTA+GGG - chr7.3:54511368-54511387 MS.gene056142:intron 35.0%
!! TCAACTGCTACTTCGTTTTT+AGG - chr7.3:54511367-54511386 MS.gene056142:intron 35.0%
!! TTGCAGTTATTAGAGGCATT+AGG - chr7.3:54514453-54514472 MS.gene056142:intron 35.0%
AAACCTGCGAGAGTAGAATT+AGG + chr7.3:54514058-54514077 None:intergenic 40.0%
AAGAGAAAGAACGGTGATCT+AGG + chr7.3:54511415-54511434 None:intergenic 40.0%
ACTTACGGCCTGATTATCTT+TGG + chr7.3:54514830-54514849 None:intergenic 40.0%
AGAGAAAGAACGGTGATCTA+GGG + chr7.3:54511414-54511433 None:intergenic 40.0%
ATCGATCCGAGAAGCTAAAT+CGG - chr7.3:54511265-54511284 MS.gene056142:CDS 40.0%
CCAACTAGCTCAATTCTGTA+AGG + chr7.3:54514413-54514432 None:intergenic 40.0%
CCTAGACTATGTGTAGACAT+CGG - chr7.3:54513458-54513477 MS.gene056142:intron 40.0%
CCTTACAGAATTGAGCTAGT+TGG - chr7.3:54514410-54514429 MS.gene056142:intron 40.0%
CTACAGGCAATCAAAGCAAA+AGG - chr7.3:54512648-54512667 MS.gene056142:intron 40.0%
CTCTATTGAATCTGCAGAAG+CGG - chr7.3:54515324-54515343 MS.gene056142:intron 40.0%
CTGGAGATTATGTTTGGATG+AGG - chr7.3:54512306-54512325 MS.gene056142:intron 40.0%
GAACGAAAATTGAGAATGCG+AGG + chr7.3:54512949-54512968 None:intergenic 40.0%
GAAGTTCCAGTTTCCATGAA+TGG - chr7.3:54512814-54512833 MS.gene056142:intron 40.0%
GCCACAAATTACATTGTCTC+CGG + chr7.3:54512748-54512767 None:intergenic 40.0%
GGGCAGAAAATTATCTTGCT+TGG - chr7.3:54513337-54513356 MS.gene056142:intron 40.0%
GGGGTTCTTGAGCATATTAA+TGG - chr7.3:54511962-54511981 MS.gene056142:CDS 40.0%
GGTTGTGTTTGATAAGGATG+GGG - chr7.3:54511943-54511962 MS.gene056142:CDS 40.0%
TATGGTGCAATGCAAATGAG+TGG - chr7.3:54513429-54513448 MS.gene056142:intron 40.0%
TGGAAACTGGAACTTCTGAT+TGG + chr7.3:54512810-54512829 None:intergenic 40.0%
TGTGATGAATTCGTGGAACA+TGG - chr7.3:54511750-54511769 MS.gene056142:intron 40.0%
TTTGATTGCCTGTAGAAAGC+AGG + chr7.3:54512643-54512662 None:intergenic 40.0%
TTTGCAAGACTCATGCATAC+AGG + chr7.3:54514269-54514288 None:intergenic 40.0%
! CAACTAGTTATACTTGCTGC+CGG - chr7.3:54512726-54512745 MS.gene056142:intron 40.0%
! GAGACAATGTAATTTGTGGC+AGG - chr7.3:54512748-54512767 MS.gene056142:intron 40.0%
! TGAAGACCGATTTAGCTTCT+CGG + chr7.3:54511274-54511293 None:intergenic 40.0%
! TTGTAGCTCTGCTTCTGTTA+GGG + chr7.3:54515357-54515376 None:intergenic 40.0%
!! CGTTTTGGCCAAAGATAATC+AGG - chr7.3:54514819-54514838 MS.gene056142:CDS 40.0%
!!! GTTGCTCCTGTTTTTACCTT+TGG + chr7.3:54514717-54514736 None:intergenic 40.0%
AAACAGTGACCATGAAGCCA+TGG + chr7.3:54511529-54511548 None:intergenic 45.0%
AAGATCAGCCTGCTTTCTAC+AGG - chr7.3:54512632-54512651 MS.gene056142:intron 45.0%
ACGCACCTCAATTCGATTGT+TGG - chr7.3:54514150-54514169 MS.gene056142:intron 45.0%
AGCAAGAAACCTGCAGAAGA+TGG - chr7.3:54512702-54512721 MS.gene056142:intron 45.0%
AGTACTGCTTCAAGAAGTCG+AGG - chr7.3:54515376-54515395 MS.gene056142:intron 45.0%
ATCTGATCCTGCAGTTGCTT+TGG - chr7.3:54511836-54511855 MS.gene056142:intron 45.0%
ATGGCTTCATGGTCACTGTT+TGG - chr7.3:54511528-54511547 MS.gene056142:intron 45.0%
ATGTCAGGTAGAGATTCTGC+TGG + chr7.3:54511470-54511489 None:intergenic 45.0%
CAAGACTCATGCATACAGGA+TGG + chr7.3:54514265-54514284 None:intergenic 45.0%
CAAGGAATTTCTGCGAAGTG+CGG + chr7.3:54511241-54511260 None:intergenic 45.0%
CAGGCAATCAAAGCAAAAGG+TGG - chr7.3:54512651-54512670 MS.gene056142:intron 45.0%
CATCCTAATTCTACTCTCGC+AGG - chr7.3:54514052-54514071 MS.gene056142:intron 45.0%
CATCGATCGATATGGACACA+TGG - chr7.3:54513859-54513878 MS.gene056142:CDS 45.0%
CATTTCTTGACAACAGCTGC+AGG + chr7.3:54511795-54511814 None:intergenic 45.0%
CCGATGTCTACACATAGTCT+AGG + chr7.3:54513461-54513480 None:intergenic 45.0%
CGCTTCTGCAGATTCAATAG+AGG + chr7.3:54515326-54515345 None:intergenic 45.0%
CGGCAGCAAGTATAACTAGT+TGG + chr7.3:54512728-54512747 None:intergenic 45.0%
CTCTATTGCACAGATGCTGT+TGG - chr7.3:54514684-54514703 MS.gene056142:intron 45.0%
CTGCGAGAGTAGAATTAGGA+TGG + chr7.3:54514054-54514073 None:intergenic 45.0%
CTTCCTTGAAGCTCCTGTTT+CGG - chr7.3:54512677-54512696 MS.gene056142:intron 45.0%
CTTCTCGGATCGATTGAACA+AGG + chr7.3:54511259-54511278 None:intergenic 45.0%
GAGTCGAGATCAAAGATGTC+AGG + chr7.3:54511485-54511504 None:intergenic 45.0%
GCCGGAGACAATGTAATTTG+TGG - chr7.3:54512744-54512763 MS.gene056142:intron 45.0%
GGTCCACCAAAGGTAAAAAC+AGG - chr7.3:54514708-54514727 MS.gene056142:intron 45.0%
GTGTCCATATCGATCGATGA+TGG + chr7.3:54513858-54513877 None:intergenic 45.0%
TATAAACTTGGGTCTGCAGC+AGG - chr7.3:54515252-54515271 MS.gene056142:intron 45.0%
TATGACATGAAGGGCAGTGA+GGG - chr7.3:54514584-54514603 MS.gene056142:intron 45.0%
TATTGCACAGATGCTGTTGG+TGG - chr7.3:54514687-54514706 MS.gene056142:intron 45.0%
TCAATCAACCTTCTACGCCA+TGG - chr7.3:54511509-54511528 MS.gene056142:intron 45.0%
TTATGACATGAAGGGCAGTG+AGG - chr7.3:54514583-54514602 MS.gene056142:intron 45.0%
TTCCTTGAAGCTCCTGTTTC+GGG - chr7.3:54512678-54512697 MS.gene056142:intron 45.0%
TTGGAACAGAACCCTCTCTA+AGG - chr7.3:54511547-54511566 MS.gene056142:intron 45.0%
! CAGAATTGAGCTAGTTGGTG+TGG - chr7.3:54514415-54514434 MS.gene056142:intron 45.0%
! CTAGTTGGTGTGGTTTGTGA+TGG - chr7.3:54514425-54514444 MS.gene056142:intron 45.0%
! CTTGTAGCTCTGCTTCTGTT+AGG + chr7.3:54515358-54515377 None:intergenic 45.0%
!! AGTCTCTCAGGGTTGATACA+TGG + chr7.3:54515159-54515178 None:intergenic 45.0%
!! GCAAACTTGTTGACAGTGCT+AGG - chr7.3:54514661-54514680 MS.gene056142:CDS 45.0%
!!! GCTCCTGTTTTTACCTTTGG+TGG + chr7.3:54514714-54514733 None:intergenic 45.0%
!!! TTTTATTTTATTTTTTTTAG+AGG - chr7.3:54513577-54513596 MS.gene056142:intron 5.0%
ACTAGTTGGCCATCTTCTGC+AGG + chr7.3:54512714-54512733 None:intergenic 50.0%
ATCCAACTATGAGGTGCAGC+TGG - chr7.3:54514199-54514218 MS.gene056142:intron 50.0%
CCTGCCATCATCGATCGATA+TGG - chr7.3:54513851-54513870 MS.gene056142:CDS 50.0%
GGCAATTGCCCATGCAAATC+TGG + chr7.3:54513103-54513122 None:intergenic 50.0%
GGTTTCTTGCTACCCGAAAC+AGG + chr7.3:54512693-54512712 None:intergenic 50.0%
GTGGAACATGGTGCTTCAGT+TGG - chr7.3:54511762-54511781 MS.gene056142:intron 50.0%
TACCCGAAACAGGAGCTTCA+AGG + chr7.3:54512683-54512702 None:intergenic 50.0%
! CCATATCGATCGATGATGGC+AGG + chr7.3:54513854-54513873 None:intergenic 50.0%
! TGATCCTGCAGTTGCTTTGG+CGG - chr7.3:54511839-54511858 MS.gene056142:intron 50.0%
CCATGAAGCCATGGCGTAGA+AGG + chr7.3:54511520-54511539 None:intergenic 55.0%
CCTTCTACGCCATGGCTTCA+TGG - chr7.3:54511517-54511536 MS.gene056142:intron 55.0%
CTCCAGCTGCACCTCATAGT+TGG + chr7.3:54514204-54514223 None:intergenic 55.0%
!! TGCTGTTGGTGGTCCACCAA+AGG - chr7.3:54514698-54514717 MS.gene056142:intron 55.0%
CTGACCGCCAAAGCAACTGC+AGG + chr7.3:54511846-54511865 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 54511223 54515415 54511223 ID=MS.gene056142
chr7.3 mRNA 54511223 54515415 54511223 ID=MS.gene056142.t1;Parent=MS.gene056142
chr7.3 exon 54515379 54515415 54515379 ID=MS.gene056142.t1.exon1;Parent=MS.gene056142.t1
chr7.3 CDS 54515379 54515415 54515379 ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1
chr7.3 exon 54515070 54515173 54515070 ID=MS.gene056142.t1.exon2;Parent=MS.gene056142.t1
chr7.3 CDS 54515070 54515173 54515070 ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1
chr7.3 exon 54514778 54514888 54514778 ID=MS.gene056142.t1.exon3;Parent=MS.gene056142.t1
chr7.3 CDS 54514778 54514888 54514778 ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1
chr7.3 exon 54514596 54514694 54514596 ID=MS.gene056142.t1.exon4;Parent=MS.gene056142.t1
chr7.3 CDS 54514596 54514694 54514596 ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1
chr7.3 exon 54513702 54513984 54513702 ID=MS.gene056142.t1.exon5;Parent=MS.gene056142.t1
chr7.3 CDS 54513702 54513984 54513702 ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1
chr7.3 exon 54512164 54512311 54512164 ID=MS.gene056142.t1.exon6;Parent=MS.gene056142.t1
chr7.3 CDS 54512164 54512311 54512164 ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1
chr7.3 exon 54511919 54512042 54511919 ID=MS.gene056142.t1.exon7;Parent=MS.gene056142.t1
chr7.3 CDS 54511919 54512042 54511919 ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1
chr7.3 exon 54511223 54511297 54511223 ID=MS.gene056142.t1.exon8;Parent=MS.gene056142.t1
chr7.3 CDS 54511223 54511297 54511223 ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1
Gene Sequence

>MS.gene056142

ATGAGATCTTCGTCGCCGCACTTCGCAGAAATTCCTTGTTCAATCGATCCGAGAAGCTAAATCGGTCTTCACCTTACCTAAAATTCAAGATTGATGATTCTTCAGCTTTATTTTCTTCATTATAAGGTTATATTTTTCATTCTATCAACTGCTACTTCGTTTTTAGGGTTCTCACTTCAATGTTTGAACCCTAGATCACCGTTCTTTCTCTTATGCTTCTTCTGTGCATGTTTTTGTTTCAGATCCAGCAGAATCTCTACCTGACATCTTTGATCTCGACTCAATGTCAATCAACCTTCTACGCCATGGCTTCATGGTCACTGTTTGGAACAGAACCCTCTCTAAGGTTATTCATTTCATTTTACTCTTTACTTTATCTTTTATCATCCAAATAGCTTATTATACATAAGCTCTTATTTCATAAGTGATTATGCTATAAGCGCTTAAGTAAGTTTTATAGAACTACTTGTGGTTTTGAAACATAGCTTGTAGTGATGACTCAGTTTTGTCGTGACATCTGATTGTAGTGTGATGAATTCGTGGAACATGGTGCTTCAGTTGGAGAAACACCTGCAGCTGTTGTCAAGAAATGCAAGTATACAATTGCAATGTTATCTGATCCTGCAGTTGCTTTGGCGGTCAGTGACTGCGAAATTTGTCCTTGATGCGACAACTATTTGTTTTCTCGTACTTAAATTCTGTTTCGTGTTGAATTTTTTAGGTTGTGTTTGATAAGGATGGGGTTCTTGAGCATATTAATGGAAAAGGTTATATTGACATGTCAACAGTTGATGCCGAGACATCTATAAAGATATCTGAGGTTGCTATATTCTGCTGTTGCTGATGCATATTTTAATAGCTGAAAAATGTTGCCAAAATCCTTTTCTCTTTTTCGTAGATTGTGATATGAATAAAATGACTTTAGCTTGTAATTGATATGATCAAGACTCTTTAAGTTTTAGTATTAACTATTAAGCATTGACGTAATTATAAATATGTGATTGATTGCAGTTATTATTTTGAATTTGGCCATTGAAAGTTTCTGTTTTTAAGGCAATTTAGTTTGTTGAGAAGTCTATAGTACTGGAGATTATGTTTGGATGAGGAATACTTAAGTATAAAGTTAAGCTTTCCTAATTTTATATGCGAGAATTTAAAGACTATGTACATTATTCTCAGATTCTTGCCGTAGAATGTTTGAATATATGCTATGTTGTTTCAAAAGAAGAAGAAAAATGTGTATATCCACTACTTTTCTTTGATATGTATGAATCAATGGTTGACTGTAGTAAGTAGTTACTATATTTGCATATCAATGCTATAAGCATAACCTGGTAGTTTACATTTTACATGATAATAGACTTTTCAATGGAATTGGAAAAAGGACCTTTCTTATAAATTGCAACTGAAAGATCAGCCTGCTTTCTACAGGCAATCAAAGCAAAAGGTGGTGACTTCCTTGAAGCTCCTGTTTCGGGTAGCAAGAAACCTGCAGAAGATGGCCAACTAGTTATACTTGCTGCCGGAGACAATGTAATTTGTGGCAGGCTTTGTATTACTTTCTTTTATACTTGGAGTATTCATCCAATCAGAAGTTCCAGTTTCCATGAATGGACTAATAAAGTTAAGTGGGGAGAGTGCATTTATGCTGATGAGTCTTCTCAGAGCAACTCTTGTGCCTCACAACTTTTACCTTCATTCTTCTATTGTACAGGTATTCTTTCCTCGCATTCTCAATTTTCGTTCATGCAAATGTACTGAAATGTCTGTGTCTATGGCAAGCTTCCAAGAAAATATCTTTTATTTGCGTGTTGGTTTATTTGCACCTCATCTTCTGCTTGTTTGTAAGATGAAACGTCTGATTGTTGTATAAATTACCAGATTTGCATGGGCAATTGCCTTACTGCTGAAGCTTTTTTTATCTTTAATGAATATTTTAAATAACAGAGTATAAGGGTACTCTAACCTGAAACAAACATGGAATAAAAAGTAATTAGATAAGTTGTACAACTCAATTTTAAAATTAAGGTTGTCATTCATTCTTCAAAATATTATTAGCTTGATTCAAAGAGATTGGTTTCATATGGATTCTCATCACGTTAGAGAAGACAATAGGGCAGAAAATTATCTTGCTTGGAATGGAAGGTGCATTCGTCATCTCTAACCTTCACTTATATTACACAATTCCTAAGCACTTACATATTAATATGGTGCAATGCAAATGAGTGGTACTTACCTAGACTATGTGTAGACATCGGTAAAGAACGATTGAAAATATTAAATAAAACGAGTTCACATGAATGAAATATATATGAGTATGTACTAAAAGAAAACACAAATTATGTTGTTTATATTTTTATTTTATTTTTTTTAGAGGAAGTTATATGTACTAGGACGTGATTCTGTTTTGTTAAATTTGCTTGGTCATGTGATACTTTCCACTAGATGTTCATCATAAGATAGAAAATGGAATCGTCATTAAAAATAGTGTGCATGATTTGGTTAAGATGTCAAAATCTTACTGTATATAGTACATCCATAGTAGGTCAATGCGAAATTCCTATGAGTTGTATGTAACTAGCAGTTATGCCTATTTTGTTATAGATGAAAGAAGGAATATTCAAATTTCCTGCCATCATCGATCGATATGGACACATGGTTATCAATCTTGAATATTCAATCTAAATGGACGAAAAATAATATTTAAAATTTATTTGATAAATCCATACTATGCAAGTAAATTATGGTATCCTTTTACTTGTCTATTATAGCAAAAAAGGCAAATATTGTGCTACTATGGCCAAAGATTCTTAAAGAGTAAGTATCGTCCATCCTAATTCTACTCTCGCAGGTTTATCATTGTTCACTTTTAATAATTCTACAAAATCTATCTTTTCACTTTTAATAGTCAAATGTTGTTTCTCTAGACGCACCTCAATTCGATTGTTGGATTATTTAATGTCTGCATTTGGATCAATCCAACTATGAGGTGCAGCTGGAGAGACAATACAAAATCCAAACGTGTGTCATACATATGATCCATCCTGTATGCATGAGTCTTGCAAATATGATTATTCAAACTATACATGCATTTTTTGTGAAAGGAAACTATACAAAGCAAGTGAATGAGGGAGAAGAAGAACATCAACAAGAGGAAAATTCTACAGGGGAACTACACTCTCAAAAGCCTTACAGAATTGAGCTAGTTGGTGTGGTTTGTGATGGATATCTTGCAGTTATTAGAGGCATTAGGTGTATATGCTTGTGAAACTCTACTATATTTATATACTTTGGTGGTGTGATTTTTTGTTATGATGGTATAATTAACATTTTCCTTTTGGAATTTTAACAGGAGAACTATTATGACATGAAGGGCAGTGAGGGTGAATTCACAATTGCAATCTAACAAAAGATTTGCTAATGCATTTCCAAAATATTGCAAACTTGTTGACAGTGCTAGGCTCTATTGCACAGATGCTGTTGGTGGTCCACCAAAGGTAAAAACAGGAGCAACTTTCTTCGCTTGTGATTGATTTTACACTTTATTATTACTAGTATTAAAATTAAAATGTCATAAATATGTTTTGTCCTAAAATCGTTTTGGCCAAAGATAATCAGGCCGTAAGTCAGAAGATATTATTCATCTCTTGTTTTGTACTTTTTTATTTCACATGGTACATTTTATGACCAAAGTTCTTGTCAAACAAATGCTCTCTGCTTGCATTTTGTTATGAACTCATGATATACTACTGCTCCTTTTCATTATTGATTTATTGGGGAAATTATTCTTTGTGCTAGGAGTAAAAATGAGTTGAATAGATGTCCAACCTTATTCAAAATGTTTTACATTTTCCTTTGATATCTGAGCTAATAAGCTTATTGAAAATATCTCAGTGACTGATTGAAAATTCTCAAACTTGAAGCATCTGCGCACCATGTATCAACCCTGAGAGACTGTTAAACATTCAGATGTAAAAAAAAAAAACTTATAATGAAATATTTCTTTCCGAAGGTATAGATGACTGAAGTTATAAACTTGGGTCTGCAGCAGGATGTGTGTTTACATTGTTTCTCATATAAAATGCCATAGAATAATTTTACCTCTATTGAATCTGCAGAAGCGGTTAGAGTCCCTAACAGAAGCAGAGCTACAAGTACTGCTTCAAGAAGTCGAGGAAGAGAAGAGTCGTTAG

Protein sequence

>MS.gene056142.t1

MRSSSPHFAEIPYPAESLPDIFDLDSMSINLLRHGFMVTVWNRTLSKCDEFVEHGASVGETPAAVVKKCKYTIAMLSDPAVALAVVFDKDGVLEHINGKGYIDMSTVDAETSIKISEAIKAKGGDFLEAPVSGSKKPAEDGQLVILAAGDNVICGRLCITFFYTWSIHPIRSSSFHEWTNKVKWGECIYADESSQSNSCASQLLPSFFYCTGNYTKQVNEGEEEHQQEENSTGELHSQKPYRIELVGVVCDGYLAVIRGIRAVRVNSQLQSNKRFANAFPKYCKLVDSARLYCTDAVGGPPKKRLESLTEAELQVLLQEVEEEKSR