Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056142.t1 | XP_013444705.1 | 96 | 125 | 5 | 0 | 26 | 150 | 14 | 138 | 4.60E-59 | 238.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056142.t1 | Q9LSV0 | 78.3 | 129 | 27 | 1 | 26 | 153 | 14 | 142 | 6.7e-51 | 202.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056142.t1 | I3SHU4 | 96.0 | 125 | 5 | 0 | 26 | 150 | 14 | 138 | 3.3e-59 | 238.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054236 | MS.gene056142 | 0.808995 | 2.35E-50 | -1.69E-46 |
MS.gene055228 | MS.gene056142 | 0.812313 | 4.51E-51 | -1.69E-46 |
MS.gene056142 | MS.gene059439 | 0.811195 | 7.91E-51 | -1.69E-46 |
MS.gene056142 | MS.gene060167 | 0.808194 | 3.49E-50 | -1.69E-46 |
MS.gene056142 | MS.gene060998 | 0.801151 | 1.03E-48 | -1.69E-46 |
MS.gene056142 | MS.gene06697 | 0.815834 | 7.54E-52 | -1.69E-46 |
MS.gene056142 | MS.gene069554 | 0.810206 | 1.29E-50 | -1.69E-46 |
MS.gene056142 | MS.gene071551 | 0.802447 | 5.59E-49 | -1.69E-46 |
MS.gene056142 | MS.gene20558 | 0.803743 | 3.01E-49 | -1.69E-46 |
MS.gene056142 | MS.gene31735 | 0.810322 | 1.22E-50 | -1.69E-46 |
MS.gene056142 | MS.gene34667 | 0.809391 | 1.94E-50 | -1.69E-46 |
MS.gene056142 | MS.gene52061 | 0.813317 | 2.72E-51 | -1.69E-46 |
MS.gene056142 | MS.gene55717 | 0.801842 | 7.44E-49 | -1.69E-46 |
MS.gene056142 | MS.gene55718 | 0.802304 | 5.98E-49 | -1.69E-46 |
MS.gene056142 | MS.gene73332 | 0.820075 | 8.31E-53 | -1.69E-46 |
MS.gene056142 | MS.gene80516 | 0.842109 | 3.16E-58 | -1.69E-46 |
MS.gene056142 | MS.gene92196 | 0.803802 | 2.93E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056142.t1 | MTR_8g028120 | 96.000 | 125 | 5 | 0 | 26 | 150 | 14 | 138 | 8.29e-81 | 247 |
MS.gene056142.t1 | MTR_1g075200 | 88.660 | 97 | 3 | 2 | 213 | 302 | 344 | 439 | 2.91e-50 | 174 |
MS.gene056142.t1 | MTR_1g475250 | 88.660 | 97 | 3 | 2 | 213 | 302 | 344 | 439 | 2.91e-50 | 174 |
MS.gene056142.t1 | MTR_1g075260 | 70.707 | 99 | 21 | 2 | 211 | 302 | 317 | 414 | 2.91e-36 | 136 |
MS.gene056142.t1 | MTR_1g075260 | 70.707 | 99 | 21 | 2 | 211 | 302 | 341 | 438 | 4.43e-36 | 136 |
MS.gene056142.t1 | MTR_2g099910 | 54.400 | 125 | 56 | 1 | 27 | 150 | 60 | 184 | 4.79e-36 | 130 |
MS.gene056142.t1 | MTR_2g099910 | 54.400 | 125 | 56 | 1 | 27 | 150 | 60 | 184 | 7.82e-36 | 130 |
MS.gene056142.t1 | MTR_2g099910 | 54.400 | 125 | 56 | 1 | 27 | 150 | 60 | 184 | 2.87e-35 | 131 |
MS.gene056142.t1 | MTR_1g075250 | 67.677 | 99 | 14 | 2 | 211 | 302 | 337 | 424 | 1.57e-34 | 132 |
MS.gene056142.t1 | MTR_1g070385 | 61.628 | 86 | 24 | 2 | 224 | 302 | 637 | 720 | 1.29e-24 | 105 |
MS.gene056142.t1 | MTR_7g096300 | 55.556 | 99 | 30 | 2 | 211 | 302 | 582 | 673 | 1.41e-24 | 104 |
MS.gene056142.t1 | MTR_1g475250 | 86.792 | 53 | 6 | 1 | 213 | 265 | 344 | 395 | 1.14e-22 | 98.2 |
MS.gene056142.t1 | MTR_8g102470 | 32.609 | 138 | 91 | 2 | 26 | 161 | 49 | 186 | 2.76e-16 | 79.0 |
MS.gene056142.t1 | MTR_8g102470 | 29.630 | 162 | 109 | 3 | 26 | 182 | 25 | 186 | 3.69e-16 | 78.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056142.t1 | AT3G25530 | 78.295 | 129 | 27 | 1 | 26 | 153 | 14 | 142 | 2.71e-66 | 207 |
MS.gene056142.t1 | AT3G25530 | 78.295 | 129 | 27 | 1 | 26 | 153 | 14 | 142 | 2.49e-65 | 207 |
MS.gene056142.t1 | AT3G25530 | 71.094 | 128 | 27 | 1 | 26 | 153 | 14 | 131 | 8.33e-57 | 185 |
MS.gene056142.t1 | AT1G17650 | 56.000 | 125 | 54 | 1 | 27 | 150 | 22 | 146 | 1.65e-35 | 130 |
MS.gene056142.t1 | AT1G17650 | 55.556 | 126 | 55 | 1 | 27 | 151 | 81 | 206 | 2.34e-35 | 132 |
MS.gene056142.t1 | AT1G04280 | 70.513 | 78 | 16 | 1 | 232 | 302 | 322 | 399 | 5.25e-29 | 116 |
MS.gene056142.t1 | AT1G04280 | 70.513 | 78 | 16 | 1 | 232 | 302 | 376 | 453 | 1.08e-28 | 116 |
MS.gene056142.t1 | AT1G06750 | 59.596 | 99 | 26 | 3 | 211 | 302 | 340 | 431 | 2.17e-27 | 112 |
MS.gene056142.t1 | AT1G06750 | 59.596 | 99 | 26 | 3 | 211 | 302 | 340 | 431 | 2.17e-27 | 112 |
MS.gene056142.t1 | AT1G06750 | 59.596 | 99 | 26 | 3 | 211 | 302 | 347 | 438 | 2.21e-27 | 112 |
MS.gene056142.t1 | AT2G30630 | 59.794 | 97 | 25 | 3 | 213 | 302 | 356 | 445 | 2.00e-26 | 109 |
MS.gene056142.t1 | AT2G30630 | 59.794 | 97 | 25 | 3 | 213 | 302 | 377 | 466 | 2.12e-26 | 109 |
MS.gene056142.t1 | AT4G29120 | 29.630 | 162 | 109 | 3 | 26 | 182 | 51 | 212 | 2.87e-14 | 72.8 |
Find 71 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAACAAGTTTGCAATATTT+TGG | 0.119289 | 7.3:+54511965 | None:intergenic |
TTCCTTGAAGCTCCTGTTTC+GGG | 0.242809 | 7.3:-54513938 | MS.gene056142:CDS |
CTTGTAGCTCTGCTTCTGTT+AGG | 0.288048 | 7.3:+54511261 | None:intergenic |
TAACTTTATTAGTCCATTCA+TGG | 0.293732 | 7.3:+54513789 | None:intergenic |
CTTCCTTGAAGCTCCTGTTT+CGG | 0.308871 | 7.3:-54513939 | MS.gene056142:CDS |
ATTAGTCCATTCATGGAAAC+TGG | 0.310723 | 7.3:+54513796 | None:intergenic |
CCTTCTACGCCATGGCTTCA+TGG | 0.327105 | 7.3:-54515099 | MS.gene056142:CDS |
GGGGTTCTTGAGCATATTAA+TGG | 0.347197 | 7.3:-54514654 | MS.gene056142:CDS |
TAGGTTGTGTTTGATAAGGA+TGG | 0.366826 | 7.3:-54514675 | MS.gene056142:CDS |
ATCTGATCCTGCAGTTGCTT+TGG | 0.374621 | 7.3:-54514780 | MS.gene056142:CDS |
ATGGCTTCATGGTCACTGTT+TGG | 0.378160 | 7.3:-54515088 | MS.gene056142:CDS |
TTGGAACAGAACCCTCTCTA+AGG | 0.382938 | 7.3:-54515069 | MS.gene056142:intron |
GAAGTTCCAGTTTCCATGAA+TGG | 0.383498 | 7.3:-54513802 | MS.gene056142:CDS |
CTTGAGCATATTAATGGAAA+AGG | 0.405372 | 7.3:-54514648 | MS.gene056142:CDS |
GGATATCTTGCAGTTATTAG+AGG | 0.406489 | 7.3:-54512170 | MS.gene056142:CDS |
GGTTTCTTGCTACCCGAAAC+AGG | 0.408958 | 7.3:+54513926 | None:intergenic |
CCTTCATTCTTCTATTGTAC+AGG | 0.410131 | 7.3:-54513701 | MS.gene056142:intron |
CCATGAAGCCATGGCGTAGA+AGG | 0.420998 | 7.3:+54515099 | None:intergenic |
CATTTCTTGACAACAGCTGC+AGG | 0.421749 | 7.3:+54514824 | None:intergenic |
TTGCAGTTATTAGAGGCATT+AGG | 0.422529 | 7.3:-54512163 | MS.gene056142:intron |
TTGTAGCTCTGCTTCTGTTA+GGG | 0.423721 | 7.3:+54511262 | None:intergenic |
TGGAAACTGGAACTTCTGAT+TGG | 0.429237 | 7.3:+54513809 | None:intergenic |
AGGTTGTGTTTGATAAGGAT+GGG | 0.430243 | 7.3:-54514674 | MS.gene056142:CDS |
CAACAAGAGGAAAATTCTAC+AGG | 0.441415 | 7.3:-54512248 | MS.gene056142:CDS |
TGATCCTGCAGTTGCTTTGG+CGG | 0.453584 | 7.3:-54514777 | MS.gene056142:intron |
AATGGACTAATAAAGTTAAG+TGG | 0.471280 | 7.3:-54513784 | MS.gene056142:CDS |
ACTAGTTGGCCATCTTCTGC+AGG | 0.480199 | 7.3:+54513905 | None:intergenic |
ATGGACTAATAAAGTTAAGT+GGG | 0.489288 | 7.3:-54513783 | MS.gene056142:CDS |
GTGGAACATGGTGCTTCAGT+TGG | 0.499862 | 7.3:-54514854 | MS.gene056142:CDS |
TACCCGAAACAGGAGCTTCA+AGG | 0.501374 | 7.3:+54513936 | None:intergenic |
GGTTGTGTTTGATAAGGATG+GGG | 0.501563 | 7.3:-54514673 | MS.gene056142:CDS |
GCAAACTTGTTGACAGTGCT+AGG | 0.509508 | 7.3:-54511955 | MS.gene056142:CDS |
CTAGTTGGTGTGGTTTGTGA+TGG | 0.513280 | 7.3:-54512191 | MS.gene056142:CDS |
CTATACAAAGCAAGTGAATG+AGG | 0.513355 | 7.3:-54512285 | MS.gene056142:CDS |
TGAAATGAATAACCTTAGAG+AGG | 0.515209 | 7.3:+54515057 | None:intergenic |
GAGACAATGTAATTTGTGGC+AGG | 0.517896 | 7.3:-54513868 | MS.gene056142:CDS |
GCCACAAATTACATTGTCTC+CGG | 0.519602 | 7.3:+54513871 | None:intergenic |
CTACAGGCAATCAAAGCAAA+AGG | 0.523095 | 7.3:-54513968 | MS.gene056142:intron |
CCAACTAGCTCAATTCTGTA+AGG | 0.525410 | 7.3:+54512206 | None:intergenic |
CCTTACAGAATTGAGCTAGT+TGG | 0.526663 | 7.3:-54512206 | MS.gene056142:CDS |
GAGTCGAGATCAAAGATGTC+AGG | 0.526710 | 7.3:+54515134 | None:intergenic |
CGGCAGCAAGTATAACTAGT+TGG | 0.527224 | 7.3:+54513891 | None:intergenic |
CCTGTACAATAGAAGAATGA+AGG | 0.527437 | 7.3:+54513701 | None:intergenic |
CAGAATTGAGCTAGTTGGTG+TGG | 0.527716 | 7.3:-54512201 | MS.gene056142:CDS |
CTCTATTGCACAGATGCTGT+TGG | 0.532305 | 7.3:-54511932 | MS.gene056142:CDS |
AGCAAGAAACCTGCAGAAGA+TGG | 0.534673 | 7.3:-54513914 | MS.gene056142:CDS |
TATTGCACAGATGCTGTTGG+TGG | 0.536088 | 7.3:-54511929 | MS.gene056142:CDS |
AGATATCTTTATAGATGTCT+CGG | 0.545189 | 7.3:+54514599 | None:intergenic |
ATTGTAGTGTGATGAATTCG+TGG | 0.563701 | 7.3:-54514873 | MS.gene056142:intron |
TGCTGTTGGTGGTCCACCAA+AGG | 0.575982 | 7.3:-54511918 | MS.gene056142:intron |
TATGACATGAAGGGCAGTGA+GGG | 0.577678 | 7.3:-54512032 | MS.gene056142:intron |
TGCGGCGACGAAGATCTCAT+AGG | 0.588575 | 7.3:+54515396 | None:intergenic |
CAACTAGTTATACTTGCTGC+CGG | 0.591719 | 7.3:-54513890 | MS.gene056142:CDS |
AGAAGAAGAACATCAACAAG+AGG | 0.597156 | 7.3:-54512261 | MS.gene056142:CDS |
ATGTCAGGTAGAGATTCTGC+TGG | 0.598317 | 7.3:+54515149 | None:intergenic |
GCCGGAGACAATGTAATTTG+TGG | 0.604038 | 7.3:-54513872 | MS.gene056142:CDS |
GAAATGAATAACCTTAGAGA+GGG | 0.604564 | 7.3:+54515058 | None:intergenic |
AACAAGAGGAAAATTCTACA+GGG | 0.606029 | 7.3:-54512247 | MS.gene056142:CDS |
TATACAAAGCAAGTGAATGA+GGG | 0.610525 | 7.3:-54512284 | MS.gene056142:CDS |
CTGACCGCCAAAGCAACTGC+AGG | 0.616743 | 7.3:+54514773 | None:intergenic |
TCAATCAACCTTCTACGCCA+TGG | 0.617297 | 7.3:-54515107 | MS.gene056142:CDS |
AAACAGTGACCATGAAGCCA+TGG | 0.618588 | 7.3:+54515090 | None:intergenic |
TGTGATGAATTCGTGGAACA+TGG | 0.633240 | 7.3:-54514866 | MS.gene056142:CDS |
TGGACTAATAAAGTTAAGTG+GGG | 0.636202 | 7.3:-54513782 | MS.gene056142:CDS |
AGTACTGCTTCAAGAAGTCG+AGG | 0.646449 | 7.3:-54511240 | MS.gene056142:CDS |
CAAGGAATTTCTGCGAAGTG+CGG | 0.650590 | 7.3:+54515378 | None:intergenic |
GACATCTATAAAGATATCTG+AGG | 0.651310 | 7.3:-54514595 | MS.gene056142:intron |
GAATGAAGGTAAAAGTTGTG+AGG | 0.658798 | 7.3:+54513715 | None:intergenic |
CAGGCAATCAAAGCAAAAGG+TGG | 0.667806 | 7.3:-54513965 | MS.gene056142:CDS |
TTATGACATGAAGGGCAGTG+AGG | 0.692934 | 7.3:-54512033 | MS.gene056142:intron |
ACAAGAGGAAAATTCTACAG+GGG | 0.709176 | 7.3:-54512246 | MS.gene056142:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCTACTATATTTATATACTT+TGG | - | chr7.3:54514494-54514513 | MS.gene056142:intron | 15.0% |
!!! | AATGTAAAACATTTTGAATA+AGG | + | chr7.3:54515053-54515072 | None:intergenic | 15.0% |
!!! | ACAACTCAATTTTAAAATTA+AGG | - | chr7.3:54513229-54513248 | MS.gene056142:intron | 15.0% |
!!! | ATTTTAAATAACAGAGTATA+AGG | - | chr7.3:54513156-54513175 | MS.gene056142:intron | 15.0% |
!!! | CTTTTCATTATTGATTTATT+GGG | - | chr7.3:54514978-54514997 | MS.gene056142:intron | 15.0% |
!!! | TATAATTAACATTTTCCTTT+TGG | - | chr7.3:54514541-54514560 | MS.gene056142:intron | 15.0% |
!!! | TTTTAAATAACAGAGTATAA+GGG | - | chr7.3:54513157-54513176 | MS.gene056142:intron | 15.0% |
!!! | TTTTCATTATTGATTTATTG+GGG | - | chr7.3:54514979-54514998 | MS.gene056142:intron | 15.0% |
!! | AAATTCTCGCATATAAAATT+AGG | + | chr7.3:54512358-54512377 | None:intergenic | 20.0% |
!! | ACTATATTTATATACTTTGG+TGG | - | chr7.3:54514497-54514516 | MS.gene056142:intron | 20.0% |
!! | ATAGAGGTAAAATTATTCTA+TGG | + | chr7.3:54515310-54515329 | None:intergenic | 20.0% |
!! | ATATTAATATGTAAGTGCTT+AGG | + | chr7.3:54513412-54513431 | None:intergenic | 20.0% |
!! | CCAATAAATCAATAATGAAA+AGG | + | chr7.3:54514980-54514999 | None:intergenic | 20.0% |
!! | CTTATGTATAATAAGCTATT+TGG | + | chr7.3:54511613-54511632 | None:intergenic | 20.0% |
!! | TAAGCACTTACATATTAATA+TGG | - | chr7.3:54513411-54513430 | MS.gene056142:intron | 20.0% |
!! | TCTTGAATATTCAATCTAAA+TGG | - | chr7.3:54513889-54513908 | MS.gene056142:CDS | 20.0% |
!! | TCTTTCATCTATAACAAAAT+AGG | + | chr7.3:54513815-54513834 | None:intergenic | 20.0% |
!! | TTAAAAACAGAAACTTTCAA+TGG | + | chr7.3:54512255-54512274 | None:intergenic | 20.0% |
!!! | AATCATCAATCTTGAATTTT+AGG | + | chr7.3:54511302-54511321 | None:intergenic | 20.0% |
!!! | ATTGAAAGTTTCTGTTTTTA+AGG | - | chr7.3:54512254-54512273 | MS.gene056142:CDS | 20.0% |
!!! | ATTTTGTTATAGATGAAAGA+AGG | - | chr7.3:54513815-54513834 | MS.gene056142:CDS | 20.0% |
!!! | CCTTTTCATTATTGATTTAT+TGG | - | chr7.3:54514977-54514996 | MS.gene056142:intron | 20.0% |
!!! | GCAAATAAAAGATATTTTCT+TGG | + | chr7.3:54513011-54513030 | None:intergenic | 20.0% |
!!! | GCTTTATTTTCTTCATTATA+AGG | - | chr7.3:54511327-54511346 | MS.gene056142:intron | 20.0% |
!!! | GTATTACTTTCTTTTATACT+TGG | - | chr7.3:54512775-54512794 | MS.gene056142:intron | 20.0% |
!!! | TAAAACATTTTGAATAAGGT+TGG | + | chr7.3:54515049-54515068 | None:intergenic | 20.0% |
!!! | TGCAGTTATTATTTTGAATT+TGG | - | chr7.3:54512229-54512248 | MS.gene056142:CDS | 20.0% |
!!! | TTGTACTTTTTTATTTCACA+TGG | - | chr7.3:54514875-54514894 | MS.gene056142:intron | 20.0% |
! | AGATATCTTTATAGATGTCT+CGG | + | chr7.3:54512020-54512039 | None:intergenic | 25.0% |
! | ATAAATTACCAGATTTGCAT+GGG | - | chr7.3:54513092-54513111 | MS.gene056142:intron | 25.0% |
! | ATGACTGAAGTTATAAACTT+GGG | - | chr7.3:54515241-54515260 | MS.gene056142:intron | 25.0% |
! | CATAATTTACTTGCATAGTA+TGG | + | chr7.3:54513949-54513968 | None:intergenic | 25.0% |
! | CATACTATGCAAGTAAATTA+TGG | - | chr7.3:54513947-54513966 | MS.gene056142:CDS | 25.0% |
! | CTTGTCTATTATAGCAAAAA+AGG | - | chr7.3:54513980-54513999 | MS.gene056142:intron | 25.0% |
! | CTTTGATATGTATGAATCAA+TGG | - | chr7.3:54512479-54512498 | MS.gene056142:intron | 25.0% |
! | GAATAATATCTTCTGACTTA+CGG | + | chr7.3:54514845-54514864 | None:intergenic | 25.0% |
! | GAATTGTGTAATATAAGTGA+AGG | + | chr7.3:54513390-54513409 | None:intergenic | 25.0% |
! | GATTATTTAATGTCTGCATT+TGG | - | chr7.3:54514172-54514191 | MS.gene056142:intron | 25.0% |
! | GCATATATTCAAACATTCTA+CGG | + | chr7.3:54512412-54512431 | None:intergenic | 25.0% |
! | GTTCATCATAAGATAGAAAA+TGG | - | chr7.3:54513670-54513689 | MS.gene056142:intron | 25.0% |
! | TAAAAATAGTGTGCATGATT+TGG | - | chr7.3:54513702-54513721 | MS.gene056142:CDS | 25.0% |
! | TAACTTTATTAGTCCATTCA+TGG | + | chr7.3:54512830-54512849 | None:intergenic | 25.0% |
! | TACATATCAAAGAAAAGTAG+TGG | + | chr7.3:54512471-54512490 | None:intergenic | 25.0% |
! | TATAAATTACCAGATTTGCA+TGG | - | chr7.3:54513091-54513110 | MS.gene056142:intron | 25.0% |
! | TCAGTTGCAATTTATAAGAA+AGG | + | chr7.3:54512612-54512631 | None:intergenic | 25.0% |
! | TGCTATAATAGACAAGTAAA+AGG | + | chr7.3:54513976-54513995 | None:intergenic | 25.0% |
!! | AATAGACTTTTCAATGGAAT+TGG | - | chr7.3:54512578-54512597 | MS.gene056142:intron | 25.0% |
!! | ACTTACTCTTTAAGAATCTT+TGG | + | chr7.3:54514026-54514045 | None:intergenic | 25.0% |
!! | ATGGACTAATAAAGTTAAGT+GGG | - | chr7.3:54512833-54512852 | MS.gene056142:intron | 25.0% |
!! | CATGATAATAGACTTTTCAA+TGG | - | chr7.3:54512572-54512591 | MS.gene056142:intron | 25.0% |
!! | TCAACAAGTTTGCAATATTT+TGG | + | chr7.3:54514654-54514673 | None:intergenic | 25.0% |
!! | TTTTATTCCATGTTTGTTTC+AGG | + | chr7.3:54513191-54513210 | None:intergenic | 25.0% |
!! | TTTTCAATGGAATTGGAAAA+AGG | - | chr7.3:54512585-54512604 | MS.gene056142:intron | 25.0% |
!!! | AAGTTTTATAGAACTACTTG+TGG | - | chr7.3:54511672-54511691 | MS.gene056142:intron | 25.0% |
!!! | AATATCTTTTATTTGCGTGT+TGG | - | chr7.3:54513015-54513034 | MS.gene056142:intron | 25.0% |
!!! | AATGGACTAATAAAGTTAAG+TGG | - | chr7.3:54512832-54512851 | MS.gene056142:intron | 25.0% |
!!! | ATACATGCATTTTTTGTGAA+AGG | - | chr7.3:54514305-54514324 | MS.gene056142:intron | 25.0% |
!!! | TCAATCTTGAATTTTAGGTA+AGG | + | chr7.3:54511297-54511316 | None:intergenic | 25.0% |
!!! | TCTGTTTTGTTAAATTTGCT+TGG | - | chr7.3:54513624-54513643 | MS.gene056142:intron | 25.0% |
!!! | TGTTTCGTGTTGAATTTTTT+AGG | - | chr7.3:54511922-54511941 | MS.gene056142:CDS | 25.0% |
!!! | TTTCCTTTTGGAATTTTAAC+AGG | - | chr7.3:54514553-54514572 | MS.gene056142:intron | 25.0% |
!!! | TTTTTAGGTTGTGTTTGATA+AGG | - | chr7.3:54511937-54511956 | MS.gene056142:CDS | 25.0% |
AACAAGAGGAAAATTCTACA+GGG | - | chr7.3:54514369-54514388 | MS.gene056142:intron | 30.0% | |
ATAATCCAACAATCGAATTG+AGG | + | chr7.3:54514158-54514177 | None:intergenic | 30.0% | |
ATCTTATGATGAACATCTAG+TGG | + | chr7.3:54513664-54513683 | None:intergenic | 30.0% | |
CAATCTACGAAAAAGAGAAA+AGG | + | chr7.3:54512105-54512124 | None:intergenic | 30.0% | |
CATGTAAAATGTAAACTACC+AGG | + | chr7.3:54512556-54512575 | None:intergenic | 30.0% | |
CATTTGTTTGACAAGAACTT+TGG | + | chr7.3:54514913-54514932 | None:intergenic | 30.0% | |
CTTATTAGCTCAGATATCAA+AGG | + | chr7.3:54515078-54515097 | None:intergenic | 30.0% | |
CTTGAGCATATTAATGGAAA+AGG | - | chr7.3:54511968-54511987 | MS.gene056142:CDS | 30.0% | |
GAAAATTATCTTGCTTGGAA+TGG | - | chr7.3:54513342-54513361 | MS.gene056142:intron | 30.0% | |
GAAATGAATAACCTTAGAGA+GGG | + | chr7.3:54511561-54511580 | None:intergenic | 30.0% | |
GACATCTATAAAGATATCTG+AGG | - | chr7.3:54512021-54512040 | MS.gene056142:CDS | 30.0% | |
GAGAACTATTATGACATGAA+GGG | - | chr7.3:54514575-54514594 | MS.gene056142:intron | 30.0% | |
GATGACTGAAGTTATAAACT+TGG | - | chr7.3:54515240-54515259 | MS.gene056142:intron | 30.0% | |
GTATATAGTACATCCATAGT+AGG | - | chr7.3:54513746-54513765 | MS.gene056142:CDS | 30.0% | |
TAAAAAAAGCTTCAGCAGTA+AGG | + | chr7.3:54513124-54513143 | None:intergenic | 30.0% | |
TAGAGGAAGTTATATGTACT+AGG | - | chr7.3:54513594-54513613 | MS.gene056142:intron | 30.0% | |
TATACAAAGCAAGTGAATGA+GGG | - | chr7.3:54514332-54514351 | MS.gene056142:intron | 30.0% | |
TCTCCTGTTAAAATTCCAAA+AGG | + | chr7.3:54514559-54514578 | None:intergenic | 30.0% | |
TGAAATGAATAACCTTAGAG+AGG | + | chr7.3:54511562-54511581 | None:intergenic | 30.0% | |
TGGACTAATAAAGTTAAGTG+GGG | - | chr7.3:54512834-54512853 | MS.gene056142:intron | 30.0% | |
! | AAGAAGCATAAGAGAAAGAA+CGG | + | chr7.3:54511424-54511443 | None:intergenic | 30.0% |
! | ATAGTACTGGAGATTATGTT+TGG | - | chr7.3:54512300-54512319 | MS.gene056142:intron | 30.0% |
! | CGAAAAAGAGAAAAGGATTT+TGG | + | chr7.3:54512098-54512117 | None:intergenic | 30.0% |
! | GTTTTGTCCTAAAATCGTTT+TGG | - | chr7.3:54514804-54514823 | MS.gene056142:CDS | 30.0% |
! | TTAGCTTGATTCAAAGAGAT+TGG | - | chr7.3:54513277-54513296 | MS.gene056142:intron | 30.0% |
!! | TCAAAGAGATTGGTTTCATA+TGG | - | chr7.3:54513287-54513306 | MS.gene056142:intron | 30.0% |
!!! | GGTGTGATTTTTTGTTATGA+TGG | - | chr7.3:54514518-54514537 | MS.gene056142:intron | 30.0% |
AACAAATAGTTGTCGCATCA+AGG | + | chr7.3:54511885-54511904 | None:intergenic | 35.0% | |
ACAAGAGGAAAATTCTACAG+GGG | - | chr7.3:54514370-54514389 | MS.gene056142:intron | 35.0% | |
ACTCTAACCTGAAACAAACA+TGG | - | chr7.3:54513181-54513200 | MS.gene056142:intron | 35.0% | |
ACTTCAGTCATCTATACCTT+CGG | + | chr7.3:54515232-54515251 | None:intergenic | 35.0% | |
AGAAGAAGAACATCAACAAG+AGG | - | chr7.3:54514355-54514374 | MS.gene056142:intron | 35.0% | |
AGGTTGTGTTTGATAAGGAT+GGG | - | chr7.3:54511942-54511961 | MS.gene056142:CDS | 35.0% | |
ATCACGTTAGAGAAGACAAT+AGG | - | chr7.3:54513316-54513335 | MS.gene056142:intron | 35.0% | |
ATTAGTCCATTCATGGAAAC+TGG | + | chr7.3:54512823-54512842 | None:intergenic | 35.0% | |
ATTATCTTGCTTGGAATGGA+AGG | - | chr7.3:54513346-54513365 | MS.gene056142:intron | 35.0% | |
ATTGTAGTGTGATGAATTCG+TGG | - | chr7.3:54511743-54511762 | MS.gene056142:intron | 35.0% | |
CAACAAGAGGAAAATTCTAC+AGG | - | chr7.3:54514368-54514387 | MS.gene056142:intron | 35.0% | |
CCTGTACAATAGAAGAATGA+AGG | + | chr7.3:54512918-54512937 | None:intergenic | 35.0% | |
CCTTCATTCTTCTATTGTAC+AGG | - | chr7.3:54512915-54512934 | MS.gene056142:intron | 35.0% | |
CTATACAAAGCAAGTGAATG+AGG | - | chr7.3:54514331-54514350 | MS.gene056142:intron | 35.0% | |
GAATGAAGGTAAAAGTTGTG+AGG | + | chr7.3:54512904-54512923 | None:intergenic | 35.0% | |
GAATGTTTAACAGTCTCTCA+GGG | + | chr7.3:54515170-54515189 | None:intergenic | 35.0% | |
GCTAGTTACATACAACTCAT+AGG | + | chr7.3:54513785-54513804 | None:intergenic | 35.0% | |
GGAGAACTATTATGACATGA+AGG | - | chr7.3:54514574-54514593 | MS.gene056142:intron | 35.0% | |
GGATATCTTGCAGTTATTAG+AGG | - | chr7.3:54514446-54514465 | MS.gene056142:intron | 35.0% | |
GGGAAATTATTCTTTGTGCT+AGG | - | chr7.3:54514999-54515018 | MS.gene056142:intron | 35.0% | |
TACTGAAATGTCTGTGTCTA+TGG | - | chr7.3:54512978-54512997 | MS.gene056142:intron | 35.0% | |
TAGGTTGTGTTTGATAAGGA+TGG | - | chr7.3:54511941-54511960 | MS.gene056142:CDS | 35.0% | |
TCAATGCTATAAGCATAACC+TGG | - | chr7.3:54512535-54512554 | MS.gene056142:intron | 35.0% | |
TCACGTTAGAGAAGACAATA+GGG | - | chr7.3:54513317-54513336 | MS.gene056142:intron | 35.0% | |
TCATATGTATGACACACGTT+TGG | + | chr7.3:54514241-54514260 | None:intergenic | 35.0% | |
TGAATGTTTAACAGTCTCTC+AGG | + | chr7.3:54515171-54515190 | None:intergenic | 35.0% | |
TGTTGAGAAGTCTATAGTAC+TGG | - | chr7.3:54512287-54512306 | MS.gene056142:CDS | 35.0% | |
TTACAAACAAGCAGAAGATG+AGG | + | chr7.3:54513051-54513070 | None:intergenic | 35.0% | |
TTTGGATCAATCCAACTATG+AGG | - | chr7.3:54514190-54514209 | MS.gene056142:intron | 35.0% | |
! | AATTTCGCATTGACCTACTA+TGG | + | chr7.3:54513762-54513781 | None:intergenic | 35.0% |
! | AGGCAAATATTGTGCTACTA+TGG | - | chr7.3:54514000-54514019 | MS.gene056142:intron | 35.0% |
! | TCTTTGGCCAAAACGATTTT+AGG | + | chr7.3:54514814-54514833 | None:intergenic | 35.0% |
!! | CAACTGCTACTTCGTTTTTA+GGG | - | chr7.3:54511368-54511387 | MS.gene056142:intron | 35.0% |
!! | TCAACTGCTACTTCGTTTTT+AGG | - | chr7.3:54511367-54511386 | MS.gene056142:intron | 35.0% |
!! | TTGCAGTTATTAGAGGCATT+AGG | - | chr7.3:54514453-54514472 | MS.gene056142:intron | 35.0% |
AAACCTGCGAGAGTAGAATT+AGG | + | chr7.3:54514058-54514077 | None:intergenic | 40.0% | |
AAGAGAAAGAACGGTGATCT+AGG | + | chr7.3:54511415-54511434 | None:intergenic | 40.0% | |
ACTTACGGCCTGATTATCTT+TGG | + | chr7.3:54514830-54514849 | None:intergenic | 40.0% | |
AGAGAAAGAACGGTGATCTA+GGG | + | chr7.3:54511414-54511433 | None:intergenic | 40.0% | |
ATCGATCCGAGAAGCTAAAT+CGG | - | chr7.3:54511265-54511284 | MS.gene056142:CDS | 40.0% | |
CCAACTAGCTCAATTCTGTA+AGG | + | chr7.3:54514413-54514432 | None:intergenic | 40.0% | |
CCTAGACTATGTGTAGACAT+CGG | - | chr7.3:54513458-54513477 | MS.gene056142:intron | 40.0% | |
CCTTACAGAATTGAGCTAGT+TGG | - | chr7.3:54514410-54514429 | MS.gene056142:intron | 40.0% | |
CTACAGGCAATCAAAGCAAA+AGG | - | chr7.3:54512648-54512667 | MS.gene056142:intron | 40.0% | |
CTCTATTGAATCTGCAGAAG+CGG | - | chr7.3:54515324-54515343 | MS.gene056142:intron | 40.0% | |
CTGGAGATTATGTTTGGATG+AGG | - | chr7.3:54512306-54512325 | MS.gene056142:intron | 40.0% | |
GAACGAAAATTGAGAATGCG+AGG | + | chr7.3:54512949-54512968 | None:intergenic | 40.0% | |
GAAGTTCCAGTTTCCATGAA+TGG | - | chr7.3:54512814-54512833 | MS.gene056142:intron | 40.0% | |
GCCACAAATTACATTGTCTC+CGG | + | chr7.3:54512748-54512767 | None:intergenic | 40.0% | |
GGGCAGAAAATTATCTTGCT+TGG | - | chr7.3:54513337-54513356 | MS.gene056142:intron | 40.0% | |
GGGGTTCTTGAGCATATTAA+TGG | - | chr7.3:54511962-54511981 | MS.gene056142:CDS | 40.0% | |
GGTTGTGTTTGATAAGGATG+GGG | - | chr7.3:54511943-54511962 | MS.gene056142:CDS | 40.0% | |
TATGGTGCAATGCAAATGAG+TGG | - | chr7.3:54513429-54513448 | MS.gene056142:intron | 40.0% | |
TGGAAACTGGAACTTCTGAT+TGG | + | chr7.3:54512810-54512829 | None:intergenic | 40.0% | |
TGTGATGAATTCGTGGAACA+TGG | - | chr7.3:54511750-54511769 | MS.gene056142:intron | 40.0% | |
TTTGATTGCCTGTAGAAAGC+AGG | + | chr7.3:54512643-54512662 | None:intergenic | 40.0% | |
TTTGCAAGACTCATGCATAC+AGG | + | chr7.3:54514269-54514288 | None:intergenic | 40.0% | |
! | CAACTAGTTATACTTGCTGC+CGG | - | chr7.3:54512726-54512745 | MS.gene056142:intron | 40.0% |
! | GAGACAATGTAATTTGTGGC+AGG | - | chr7.3:54512748-54512767 | MS.gene056142:intron | 40.0% |
! | TGAAGACCGATTTAGCTTCT+CGG | + | chr7.3:54511274-54511293 | None:intergenic | 40.0% |
! | TTGTAGCTCTGCTTCTGTTA+GGG | + | chr7.3:54515357-54515376 | None:intergenic | 40.0% |
!! | CGTTTTGGCCAAAGATAATC+AGG | - | chr7.3:54514819-54514838 | MS.gene056142:CDS | 40.0% |
!!! | GTTGCTCCTGTTTTTACCTT+TGG | + | chr7.3:54514717-54514736 | None:intergenic | 40.0% |
AAACAGTGACCATGAAGCCA+TGG | + | chr7.3:54511529-54511548 | None:intergenic | 45.0% | |
AAGATCAGCCTGCTTTCTAC+AGG | - | chr7.3:54512632-54512651 | MS.gene056142:intron | 45.0% | |
ACGCACCTCAATTCGATTGT+TGG | - | chr7.3:54514150-54514169 | MS.gene056142:intron | 45.0% | |
AGCAAGAAACCTGCAGAAGA+TGG | - | chr7.3:54512702-54512721 | MS.gene056142:intron | 45.0% | |
AGTACTGCTTCAAGAAGTCG+AGG | - | chr7.3:54515376-54515395 | MS.gene056142:intron | 45.0% | |
ATCTGATCCTGCAGTTGCTT+TGG | - | chr7.3:54511836-54511855 | MS.gene056142:intron | 45.0% | |
ATGGCTTCATGGTCACTGTT+TGG | - | chr7.3:54511528-54511547 | MS.gene056142:intron | 45.0% | |
ATGTCAGGTAGAGATTCTGC+TGG | + | chr7.3:54511470-54511489 | None:intergenic | 45.0% | |
CAAGACTCATGCATACAGGA+TGG | + | chr7.3:54514265-54514284 | None:intergenic | 45.0% | |
CAAGGAATTTCTGCGAAGTG+CGG | + | chr7.3:54511241-54511260 | None:intergenic | 45.0% | |
CAGGCAATCAAAGCAAAAGG+TGG | - | chr7.3:54512651-54512670 | MS.gene056142:intron | 45.0% | |
CATCCTAATTCTACTCTCGC+AGG | - | chr7.3:54514052-54514071 | MS.gene056142:intron | 45.0% | |
CATCGATCGATATGGACACA+TGG | - | chr7.3:54513859-54513878 | MS.gene056142:CDS | 45.0% | |
CATTTCTTGACAACAGCTGC+AGG | + | chr7.3:54511795-54511814 | None:intergenic | 45.0% | |
CCGATGTCTACACATAGTCT+AGG | + | chr7.3:54513461-54513480 | None:intergenic | 45.0% | |
CGCTTCTGCAGATTCAATAG+AGG | + | chr7.3:54515326-54515345 | None:intergenic | 45.0% | |
CGGCAGCAAGTATAACTAGT+TGG | + | chr7.3:54512728-54512747 | None:intergenic | 45.0% | |
CTCTATTGCACAGATGCTGT+TGG | - | chr7.3:54514684-54514703 | MS.gene056142:intron | 45.0% | |
CTGCGAGAGTAGAATTAGGA+TGG | + | chr7.3:54514054-54514073 | None:intergenic | 45.0% | |
CTTCCTTGAAGCTCCTGTTT+CGG | - | chr7.3:54512677-54512696 | MS.gene056142:intron | 45.0% | |
CTTCTCGGATCGATTGAACA+AGG | + | chr7.3:54511259-54511278 | None:intergenic | 45.0% | |
GAGTCGAGATCAAAGATGTC+AGG | + | chr7.3:54511485-54511504 | None:intergenic | 45.0% | |
GCCGGAGACAATGTAATTTG+TGG | - | chr7.3:54512744-54512763 | MS.gene056142:intron | 45.0% | |
GGTCCACCAAAGGTAAAAAC+AGG | - | chr7.3:54514708-54514727 | MS.gene056142:intron | 45.0% | |
GTGTCCATATCGATCGATGA+TGG | + | chr7.3:54513858-54513877 | None:intergenic | 45.0% | |
TATAAACTTGGGTCTGCAGC+AGG | - | chr7.3:54515252-54515271 | MS.gene056142:intron | 45.0% | |
TATGACATGAAGGGCAGTGA+GGG | - | chr7.3:54514584-54514603 | MS.gene056142:intron | 45.0% | |
TATTGCACAGATGCTGTTGG+TGG | - | chr7.3:54514687-54514706 | MS.gene056142:intron | 45.0% | |
TCAATCAACCTTCTACGCCA+TGG | - | chr7.3:54511509-54511528 | MS.gene056142:intron | 45.0% | |
TTATGACATGAAGGGCAGTG+AGG | - | chr7.3:54514583-54514602 | MS.gene056142:intron | 45.0% | |
TTCCTTGAAGCTCCTGTTTC+GGG | - | chr7.3:54512678-54512697 | MS.gene056142:intron | 45.0% | |
TTGGAACAGAACCCTCTCTA+AGG | - | chr7.3:54511547-54511566 | MS.gene056142:intron | 45.0% | |
! | CAGAATTGAGCTAGTTGGTG+TGG | - | chr7.3:54514415-54514434 | MS.gene056142:intron | 45.0% |
! | CTAGTTGGTGTGGTTTGTGA+TGG | - | chr7.3:54514425-54514444 | MS.gene056142:intron | 45.0% |
! | CTTGTAGCTCTGCTTCTGTT+AGG | + | chr7.3:54515358-54515377 | None:intergenic | 45.0% |
!! | AGTCTCTCAGGGTTGATACA+TGG | + | chr7.3:54515159-54515178 | None:intergenic | 45.0% |
!! | GCAAACTTGTTGACAGTGCT+AGG | - | chr7.3:54514661-54514680 | MS.gene056142:CDS | 45.0% |
!!! | GCTCCTGTTTTTACCTTTGG+TGG | + | chr7.3:54514714-54514733 | None:intergenic | 45.0% |
!!! | TTTTATTTTATTTTTTTTAG+AGG | - | chr7.3:54513577-54513596 | MS.gene056142:intron | 5.0% |
ACTAGTTGGCCATCTTCTGC+AGG | + | chr7.3:54512714-54512733 | None:intergenic | 50.0% | |
ATCCAACTATGAGGTGCAGC+TGG | - | chr7.3:54514199-54514218 | MS.gene056142:intron | 50.0% | |
CCTGCCATCATCGATCGATA+TGG | - | chr7.3:54513851-54513870 | MS.gene056142:CDS | 50.0% | |
GGCAATTGCCCATGCAAATC+TGG | + | chr7.3:54513103-54513122 | None:intergenic | 50.0% | |
GGTTTCTTGCTACCCGAAAC+AGG | + | chr7.3:54512693-54512712 | None:intergenic | 50.0% | |
GTGGAACATGGTGCTTCAGT+TGG | - | chr7.3:54511762-54511781 | MS.gene056142:intron | 50.0% | |
TACCCGAAACAGGAGCTTCA+AGG | + | chr7.3:54512683-54512702 | None:intergenic | 50.0% | |
! | CCATATCGATCGATGATGGC+AGG | + | chr7.3:54513854-54513873 | None:intergenic | 50.0% |
! | TGATCCTGCAGTTGCTTTGG+CGG | - | chr7.3:54511839-54511858 | MS.gene056142:intron | 50.0% |
CCATGAAGCCATGGCGTAGA+AGG | + | chr7.3:54511520-54511539 | None:intergenic | 55.0% | |
CCTTCTACGCCATGGCTTCA+TGG | - | chr7.3:54511517-54511536 | MS.gene056142:intron | 55.0% | |
CTCCAGCTGCACCTCATAGT+TGG | + | chr7.3:54514204-54514223 | None:intergenic | 55.0% | |
!! | TGCTGTTGGTGGTCCACCAA+AGG | - | chr7.3:54514698-54514717 | MS.gene056142:intron | 55.0% |
CTGACCGCCAAAGCAACTGC+AGG | + | chr7.3:54511846-54511865 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 54511223 | 54515415 | 54511223 | ID=MS.gene056142 |
chr7.3 | mRNA | 54511223 | 54515415 | 54511223 | ID=MS.gene056142.t1;Parent=MS.gene056142 |
chr7.3 | exon | 54515379 | 54515415 | 54515379 | ID=MS.gene056142.t1.exon1;Parent=MS.gene056142.t1 |
chr7.3 | CDS | 54515379 | 54515415 | 54515379 | ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1 |
chr7.3 | exon | 54515070 | 54515173 | 54515070 | ID=MS.gene056142.t1.exon2;Parent=MS.gene056142.t1 |
chr7.3 | CDS | 54515070 | 54515173 | 54515070 | ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1 |
chr7.3 | exon | 54514778 | 54514888 | 54514778 | ID=MS.gene056142.t1.exon3;Parent=MS.gene056142.t1 |
chr7.3 | CDS | 54514778 | 54514888 | 54514778 | ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1 |
chr7.3 | exon | 54514596 | 54514694 | 54514596 | ID=MS.gene056142.t1.exon4;Parent=MS.gene056142.t1 |
chr7.3 | CDS | 54514596 | 54514694 | 54514596 | ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1 |
chr7.3 | exon | 54513702 | 54513984 | 54513702 | ID=MS.gene056142.t1.exon5;Parent=MS.gene056142.t1 |
chr7.3 | CDS | 54513702 | 54513984 | 54513702 | ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1 |
chr7.3 | exon | 54512164 | 54512311 | 54512164 | ID=MS.gene056142.t1.exon6;Parent=MS.gene056142.t1 |
chr7.3 | CDS | 54512164 | 54512311 | 54512164 | ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1 |
chr7.3 | exon | 54511919 | 54512042 | 54511919 | ID=MS.gene056142.t1.exon7;Parent=MS.gene056142.t1 |
chr7.3 | CDS | 54511919 | 54512042 | 54511919 | ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1 |
chr7.3 | exon | 54511223 | 54511297 | 54511223 | ID=MS.gene056142.t1.exon8;Parent=MS.gene056142.t1 |
chr7.3 | CDS | 54511223 | 54511297 | 54511223 | ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1 |
Gene Sequence |
Protein sequence |