AlfalfaGEDB | MS.gene056142

M. sativa cultivar XinJiangDaYe / MS.gene056142

KEGG: K18121
GO: GO:0000166 GO:0003674 GO:0005488 GO:0036094 GO:0048037 GO:0050661 GO:0050662 GO:0097159 GO:1901265 GO:1901363
PFAM: PF03446.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056142.t1	XP_013444705.1	96	125	5	0	26	150	14	138	4.60E-59	238.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056142.t1	Q9LSV0	78.3	129	27	1	26	153	14	142	6.7e-51	202.6

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056142.t1	I3SHU4	96.0	125	5	0	26	150	14	138	3.3e-59	238.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene054236	MS.gene056142	0.808995	2.35E-50	-1.69E-46
MS.gene055228	MS.gene056142	0.812313	4.51E-51	-1.69E-46
MS.gene056142	MS.gene059439	0.811195	7.91E-51	-1.69E-46
MS.gene056142	MS.gene060167	0.808194	3.49E-50	-1.69E-46
MS.gene056142	MS.gene060998	0.801151	1.03E-48	-1.69E-46
MS.gene056142	MS.gene06697	0.815834	7.54E-52	-1.69E-46
MS.gene056142	MS.gene069554	0.810206	1.29E-50	-1.69E-46
MS.gene056142	MS.gene071551	0.802447	5.59E-49	-1.69E-46
MS.gene056142	MS.gene20558	0.803743	3.01E-49	-1.69E-46
MS.gene056142	MS.gene31735	0.810322	1.22E-50	-1.69E-46

Showing 1 to 10 of 17 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056142.t1	MTR_8g028120	96.000	125	5	0	26	150	14	138	8.29e-81	247
MS.gene056142.t1	MTR_1g075200	88.660	97	3	2	213	302	344	439	2.91e-50	174
MS.gene056142.t1	MTR_1g475250	88.660	97	3	2	213	302	344	439	2.91e-50	174
MS.gene056142.t1	MTR_1g075260	70.707	99	21	2	211	302	317	414	2.91e-36	136
MS.gene056142.t1	MTR_1g075260	70.707	99	21	2	211	302	341	438	4.43e-36	136
MS.gene056142.t1	MTR_2g099910	54.400	125	56	1	27	150	60	184	4.79e-36	130
MS.gene056142.t1	MTR_2g099910	54.400	125	56	1	27	150	60	184	7.82e-36	130
MS.gene056142.t1	MTR_2g099910	54.400	125	56	1	27	150	60	184	2.87e-35	131
MS.gene056142.t1	MTR_1g075250	67.677	99	14	2	211	302	337	424	1.57e-34	132
MS.gene056142.t1	MTR_1g070385	61.628	86	24	2	224	302	637	720	1.29e-24	105

Showing 1 to 10 of 14 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056142.t1	AT3G25530	78.295	129	27	1	26	153	14	142	2.71e-66	207
MS.gene056142.t1	AT3G25530	78.295	129	27	1	26	153	14	142	2.49e-65	207
MS.gene056142.t1	AT3G25530	71.094	128	27	1	26	153	14	131	8.33e-57	185
MS.gene056142.t1	AT1G17650	56.000	125	54	1	27	150	22	146	1.65e-35	130
MS.gene056142.t1	AT1G17650	55.556	126	55	1	27	151	81	206	2.34e-35	132
MS.gene056142.t1	AT1G04280	70.513	78	16	1	232	302	322	399	5.25e-29	116
MS.gene056142.t1	AT1G04280	70.513	78	16	1	232	302	376	453	1.08e-28	116
MS.gene056142.t1	AT1G06750	59.596	99	26	3	211	302	340	431	2.17e-27	112
MS.gene056142.t1	AT1G06750	59.596	99	26	3	211	302	340	431	2.17e-27	112
MS.gene056142.t1	AT1G06750	59.596	99	26	3	211	302	347	438	2.21e-27	112

Showing 1 to 10 of 13 entries

Previous1 2Next

Find 71 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTGACCATGAAGCCA+TGG	0.618588	7.3:+54515090	None:intergenic
AACAAGAGGAAAATTCTACA+GGG	0.606029	7.3:-54512247	MS.gene056142:CDS
AATGGACTAATAAAGTTAAG+TGG	0.471280	7.3:-54513784	MS.gene056142:CDS
ACAAGAGGAAAATTCTACAG+GGG	0.709176	7.3:-54512246	MS.gene056142:CDS
ACTAGTTGGCCATCTTCTGC+AGG	0.480199	7.3:+54513905	None:intergenic
AGAAGAAGAACATCAACAAG+AGG	0.597156	7.3:-54512261	MS.gene056142:CDS
AGATATCTTTATAGATGTCT+CGG	0.545189	7.3:+54514599	None:intergenic
AGCAAGAAACCTGCAGAAGA+TGG	0.534673	7.3:-54513914	MS.gene056142:CDS
AGGTTGTGTTTGATAAGGAT+GGG	0.430243	7.3:-54514674	MS.gene056142:CDS
AGTACTGCTTCAAGAAGTCG+AGG	0.646449	7.3:-54511240	MS.gene056142:CDS

Showing 1 to 10 of 71 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACAAGAGGAAAATTCTACA+GGG	-	chr7.3:54514369-54514388	MS.gene056142:intron	30.0%
ATAATCCAACAATCGAATTG+AGG	+	chr7.3:54514158-54514177	None:intergenic	30.0%
ATCTTATGATGAACATCTAG+TGG	+	chr7.3:54513664-54513683	None:intergenic	30.0%
CAATCTACGAAAAAGAGAAA+AGG	+	chr7.3:54512105-54512124	None:intergenic	30.0%
CATGTAAAATGTAAACTACC+AGG	+	chr7.3:54512556-54512575	None:intergenic	30.0%
CATTTGTTTGACAAGAACTT+TGG	+	chr7.3:54514913-54514932	None:intergenic	30.0%
CTTATTAGCTCAGATATCAA+AGG	+	chr7.3:54515078-54515097	None:intergenic	30.0%
CTTGAGCATATTAATGGAAA+AGG	-	chr7.3:54511968-54511987	MS.gene056142:CDS	30.0%
GAAAATTATCTTGCTTGGAA+TGG	-	chr7.3:54513342-54513361	MS.gene056142:intron	30.0%
GAAATGAATAACCTTAGAGA+GGG	+	chr7.3:54511561-54511580	None:intergenic	30.0%

Showing 1 to 10 of 205 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	54511223	54515415	54511223	ID=MS.gene056142
chr7.3	mRNA	54511223	54515415	54511223	ID=MS.gene056142.t1;Parent=MS.gene056142
chr7.3	exon	54515379	54515415	54515379	ID=MS.gene056142.t1.exon1;Parent=MS.gene056142.t1
chr7.3	CDS	54515379	54515415	54515379	ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1
chr7.3	exon	54515070	54515173	54515070	ID=MS.gene056142.t1.exon2;Parent=MS.gene056142.t1
chr7.3	CDS	54515070	54515173	54515070	ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1
chr7.3	exon	54514778	54514888	54514778	ID=MS.gene056142.t1.exon3;Parent=MS.gene056142.t1
chr7.3	CDS	54514778	54514888	54514778	ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1
chr7.3	exon	54514596	54514694	54514596	ID=MS.gene056142.t1.exon4;Parent=MS.gene056142.t1
chr7.3	CDS	54514596	54514694	54514596	ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1
chr7.3	exon	54513702	54513984	54513702	ID=MS.gene056142.t1.exon5;Parent=MS.gene056142.t1
chr7.3	CDS	54513702	54513984	54513702	ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1
chr7.3	exon	54512164	54512311	54512164	ID=MS.gene056142.t1.exon6;Parent=MS.gene056142.t1
chr7.3	CDS	54512164	54512311	54512164	ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1
chr7.3	exon	54511919	54512042	54511919	ID=MS.gene056142.t1.exon7;Parent=MS.gene056142.t1
chr7.3	CDS	54511919	54512042	54511919	ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1
chr7.3	exon	54511223	54511297	54511223	ID=MS.gene056142.t1.exon8;Parent=MS.gene056142.t1
chr7.3	CDS	54511223	54511297	54511223	ID=cds.MS.gene056142.t1;Parent=MS.gene056142.t1

Gene Sequence

>MS.gene056142

ATGAGATCTTCGTCGCCGCACTTCGCAGAAATTCCTTGTTCAATCGATCCGAGAAGCTAAATCGGTCTTCACCTTACCTAAAATTCAAGATTGATGATTCTTCAGCTTTATTTTCTTCATTATAAGGTTATATTTTTCATTCTATCAACTGCTACTTCGTTTTTAGGGTTCTCACTTCAATGTTTGAACCCTAGATCACCGTTCTTTCTCTTATGCTTCTTCTGTGCATGTTTTTGTTTCAGATCCAGCAGAATCTCTACCTGACATCTTTGATCTCGACTCAATGTCAATCAACCTTCTACGCCATGGCTTCATGGTCACTGTTTGGAACAGAACCCTCTCTAAGGTTATTCATTTCATTTTACTCTTTACTTTATCTTTTATCATCCAAATAGCTTATTATACATAAGCTCTTATTTCATAAGTGATTATGCTATAAGCGCTTAAGTAAGTTTTATAGAACTACTTGTGGTTTTGAAACATAGCTTGTAGTGATGACTCAGTTTTGTCGTGACATCTGATTGTAGTGTGATGAATTCGTGGAACATGGTGCTTCAGTTGGAGAAACACCTGCAGCTGTTGTCAAGAAATGCAAGTATACAATTGCAATGTTATCTGATCCTGCAGTTGCTTTGGCGGTCAGTGACTGCGAAATTTGTCCTTGATGCGACAACTATTTGTTTTCTCGTACTTAAATTCTGTTTCGTGTTGAATTTTTTAGGTTGTGTTTGATAAGGATGGGGTTCTTGAGCATATTAATGGAAAAGGTTATATTGACATGTCAACAGTTGATGCCGAGACATCTATAAAGATATCTGAGGTTGCTATATTCTGCTGTTGCTGATGCATATTTTAATAGCTGAAAAATGTTGCCAAAATCCTTTTCTCTTTTTCGTAGATTGTGATATGAATAAAATGACTTTAGCTTGTAATTGATATGATCAAGACTCTTTAAGTTTTAGTATTAACTATTAAGCATTGACGTAATTATAAATATGTGATTGATTGCAGTTATTATTTTGAATTTGGCCATTGAAAGTTTCTGTTTTTAAGGCAATTTAGTTTGTTGAGAAGTCTATAGTACTGGAGATTATGTTTGGATGAGGAATACTTAAGTATAAAGTTAAGCTTTCCTAATTTTATATGCGAGAATTTAAAGACTATGTACATTATTCTCAGATTCTTGCCGTAGAATGTTTGAATATATGCTATGTTGTTTCAAAAGAAGAAGAAAAATGTGTATATCCACTACTTTTCTTTGATATGTATGAATCAATGGTTGACTGTAGTAAGTAGTTACTATATTTGCATATCAATGCTATAAGCATAACCTGGTAGTTTACATTTTACATGATAATAGACTTTTCAATGGAATTGGAAAAAGGACCTTTCTTATAAATTGCAACTGAAAGATCAGCCTGCTTTCTACAGGCAATCAAAGCAAAAGGTGGTGACTTCCTTGAAGCTCCTGTTTCGGGTAGCAAGAAACCTGCAGAAGATGGCCAACTAGTTATACTTGCTGCCGGAGACAATGTAATTTGTGGCAGGCTTTGTATTACTTTCTTTTATACTTGGAGTATTCATCCAATCAGAAGTTCCAGTTTCCATGAATGGACTAATAAAGTTAAGTGGGGAGAGTGCATTTATGCTGATGAGTCTTCTCAGAGCAACTCTTGTGCCTCACAACTTTTACCTTCATTCTTCTATTGTACAGGTATTCTTTCCTCGCATTCTCAATTTTCGTTCATGCAAATGTACTGAAATGTCTGTGTCTATGGCAAGCTTCCAAGAAAATATCTTTTATTTGCGTGTTGGTTTATTTGCACCTCATCTTCTGCTTGTTTGTAAGATGAAACGTCTGATTGTTGTATAAATTACCAGATTTGCATGGGCAATTGCCTTACTGCTGAAGCTTTTTTTATCTTTAATGAATATTTTAAATAACAGAGTATAAGGGTACTCTAACCTGAAACAAACATGGAATAAAAAGTAATTAGATAAGTTGTACAACTCAATTTTAAAATTAAGGTTGTCATTCATTCTTCAAAATATTATTAGCTTGATTCAAAGAGATTGGTTTCATATGGATTCTCATCACGTTAGAGAAGACAATAGGGCAGAAAATTATCTTGCTTGGAATGGAAGGTGCATTCGTCATCTCTAACCTTCACTTATATTACACAATTCCTAAGCACTTACATATTAATATGGTGCAATGCAAATGAGTGGTACTTACCTAGACTATGTGTAGACATCGGTAAAGAACGATTGAAAATATTAAATAAAACGAGTTCACATGAATGAAATATATATGAGTATGTACTAAAAGAAAACACAAATTATGTTGTTTATATTTTTATTTTATTTTTTTTAGAGGAAGTTATATGTACTAGGACGTGATTCTGTTTTGTTAAATTTGCTTGGTCATGTGATACTTTCCACTAGATGTTCATCATAAGATAGAAAATGGAATCGTCATTAAAAATAGTGTGCATGATTTGGTTAAGATGTCAAAATCTTACTGTATATAGTACATCCATAGTAGGTCAATGCGAAATTCCTATGAGTTGTATGTAACTAGCAGTTATGCCTATTTTGTTATAGATGAAAGAAGGAATATTCAAATTTCCTGCCATCATCGATCGATATGGACACATGGTTATCAATCTTGAATATTCAATCTAAATGGACGAAAAATAATATTTAAAATTTATTTGATAAATCCATACTATGCAAGTAAATTATGGTATCCTTTTACTTGTCTATTATAGCAAAAAAGGCAAATATTGTGCTACTATGGCCAAAGATTCTTAAAGAGTAAGTATCGTCCATCCTAATTCTACTCTCGCAGGTTTATCATTGTTCACTTTTAATAATTCTACAAAATCTATCTTTTCACTTTTAATAGTCAAATGTTGTTTCTCTAGACGCACCTCAATTCGATTGTTGGATTATTTAATGTCTGCATTTGGATCAATCCAACTATGAGGTGCAGCTGGAGAGACAATACAAAATCCAAACGTGTGTCATACATATGATCCATCCTGTATGCATGAGTCTTGCAAATATGATTATTCAAACTATACATGCATTTTTTGTGAAAGGAAACTATACAAAGCAAGTGAATGAGGGAGAAGAAGAACATCAACAAGAGGAAAATTCTACAGGGGAACTACACTCTCAAAAGCCTTACAGAATTGAGCTAGTTGGTGTGGTTTGTGATGGATATCTTGCAGTTATTAGAGGCATTAGGTGTATATGCTTGTGAAACTCTACTATATTTATATACTTTGGTGGTGTGATTTTTTGTTATGATGGTATAATTAACATTTTCCTTTTGGAATTTTAACAGGAGAACTATTATGACATGAAGGGCAGTGAGGGTGAATTCACAATTGCAATCTAACAAAAGATTTGCTAATGCATTTCCAAAATATTGCAAACTTGTTGACAGTGCTAGGCTCTATTGCACAGATGCTGTTGGTGGTCCACCAAAGGTAAAAACAGGAGCAACTTTCTTCGCTTGTGATTGATTTTACACTTTATTATTACTAGTATTAAAATTAAAATGTCATAAATATGTTTTGTCCTAAAATCGTTTTGGCCAAAGATAATCAGGCCGTAAGTCAGAAGATATTATTCATCTCTTGTTTTGTACTTTTTTATTTCACATGGTACATTTTATGACCAAAGTTCTTGTCAAACAAATGCTCTCTGCTTGCATTTTGTTATGAACTCATGATATACTACTGCTCCTTTTCATTATTGATTTATTGGGGAAATTATTCTTTGTGCTAGGAGTAAAAATGAGTTGAATAGATGTCCAACCTTATTCAAAATGTTTTACATTTTCCTTTGATATCTGAGCTAATAAGCTTATTGAAAATATCTCAGTGACTGATTGAAAATTCTCAAACTTGAAGCATCTGCGCACCATGTATCAACCCTGAGAGACTGTTAAACATTCAGATGTAAAAAAAAAAAACTTATAATGAAATATTTCTTTCCGAAGGTATAGATGACTGAAGTTATAAACTTGGGTCTGCAGCAGGATGTGTGTTTACATTGTTTCTCATATAAAATGCCATAGAATAATTTTACCTCTATTGAATCTGCAGAAGCGGTTAGAGTCCCTAACAGAAGCAGAGCTACAAGTACTGCTTCAAGAAGTCGAGGAAGAGAAGAGTCGTTAG

Protein sequence

>MS.gene056142.t1

MRSSSPHFAEIPYPAESLPDIFDLDSMSINLLRHGFMVTVWNRTLSKCDEFVEHGASVGETPAAVVKKCKYTIAMLSDPAVALAVVFDKDGVLEHINGKGYIDMSTVDAETSIKISEAIKAKGGDFLEAPVSGSKKPAEDGQLVILAAGDNVICGRLCITFFYTWSIHPIRSSSFHEWTNKVKWGECIYADESSQSNSCASQLLPSFFYCTGNYTKQVNEGEEEHQQEENSTGELHSQKPYRIELVGVVCDGYLAVIRGIRAVRVNSQLQSNKRFANAFPKYCKLVDSARLYCTDAVGGPPKKRLESLTEAELQVLLQEVEEEKSR