Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80607.t1 | XP_024636180.1 | 85.1 | 584 | 70 | 1 | 1 | 567 | 90 | 673 | 8.90E-284 | 985.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80607.t1 | Q9SJZ3 | 51.2 | 580 | 264 | 2 | 1 | 561 | 86 | 665 | 2.1e-164 | 580.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80607.t1 | G7JFT6 | 84.5 | 581 | 73 | 1 | 1 | 564 | 90 | 670 | 1.7e-281 | 977.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene80607 | 0.809495 | 1.84E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 116 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTACCCCTTGTTGCTTAA+AGG | 0.142967 | 8.4:-16697336 | MS.gene80607:CDS |
| TTCTTTGTTTGCCGTGTTTA+TGG | 0.158265 | 8.4:-16696120 | MS.gene80607:CDS |
| GGCAGCAGATGCTGCTGTTT+TGG | 0.214959 | 8.4:-16696151 | MS.gene80607:CDS |
| TGATTACTGGGTGTGTTAAA+AGG | 0.242218 | 8.4:-16697125 | MS.gene80607:CDS |
| TTCATGGACTACAATGGTTT+TGG | 0.253691 | 8.4:-16696836 | MS.gene80607:CDS |
| TCCACTCACTAATGCACTTA+TGG | 0.263809 | 8.4:-16696932 | MS.gene80607:CDS |
| TTAACCATAGTTACTTTATC+AGG | 0.268732 | 8.4:+16696649 | None:intergenic |
| CCTGATGAGATCACCTTTCT+TGG | 0.275109 | 8.4:-16696346 | MS.gene80607:CDS |
| CTTGGGCATGTGTTGAAGTT+TGG | 0.290108 | 8.4:-16697273 | MS.gene80607:CDS |
| GAGCACTTGATGTTGGAATA+TGG | 0.313937 | 8.4:-16696600 | MS.gene80607:CDS |
| CAGTTGCAAGATTTGACTCT+TGG | 0.325210 | 8.4:-16697003 | MS.gene80607:CDS |
| CCCAGTAATCATTGAATTCC+AGG | 0.325447 | 8.4:+16697137 | None:intergenic |
| ACGAGGCTATCAAAATCTAT+AGG | 0.333647 | 8.4:-16697092 | MS.gene80607:CDS |
| CACAGAAGACTCTTGTTTCA+TGG | 0.339277 | 8.4:-16696852 | MS.gene80607:CDS |
| ACCTGGAATTCAATGATTAC+TGG | 0.341777 | 8.4:-16697138 | MS.gene80607:CDS |
| GTTTATGGAAATGTTCAAAT+TGG | 0.354996 | 8.4:-16696105 | MS.gene80607:CDS |
| TTGGGCATGTGTTGAAGTTT+GGG | 0.355948 | 8.4:-16697272 | MS.gene80607:CDS |
| TCTTGGAATGCGGCAATTAG+AGG | 0.363386 | 8.4:-16697444 | MS.gene80607:CDS |
| CCAAATGAGATTACGATGAT+TGG | 0.366287 | 8.4:-16697045 | MS.gene80607:CDS |
| GTTGAGAGTGGAAATATAGA+AGG | 0.374152 | 8.4:-16697417 | MS.gene80607:CDS |
| ATTTGTGGTTTAGCACTTCA+TGG | 0.376133 | 8.4:-16696424 | MS.gene80607:CDS |
| CTTTCTATTGATGTCGCCTT+AGG | 0.383548 | 8.4:-16696550 | MS.gene80607:CDS |
| ATTGAATTTAGAGCTCATTT+CGG | 0.392047 | 8.4:+16696267 | None:intergenic |
| TCTTTAAGTTGTGTCGGTCT+TGG | 0.398518 | 8.4:-16697300 | MS.gene80607:CDS |
| AGAACCTGATAAAGTAACTA+TGG | 0.402676 | 8.4:-16696653 | MS.gene80607:CDS |
| CGAGGCTATCAAAATCTATA+GGG | 0.403241 | 8.4:-16697091 | MS.gene80607:CDS |
| AGGAAACTAATGAATGATAA+AGG | 0.406284 | 8.4:-16695970 | MS.gene80607:CDS |
| CCAATCATCGTAATCTCATT+TGG | 0.410225 | 8.4:+16697045 | None:intergenic |
| CCTCTTTACCATGCTTCGCC+TGG | 0.414855 | 8.4:+16696713 | None:intergenic |
| GATTACTGGGTGTGTTAAAA+GGG | 0.416014 | 8.4:-16697124 | MS.gene80607:CDS |
| AACATCCAGAAAACCAAATC+TGG | 0.417771 | 8.4:+16696807 | None:intergenic |
| TGTGTCGGTCTTGGTATACT+TGG | 0.418923 | 8.4:-16697291 | MS.gene80607:CDS |
| GATTGTGCCTTTCAATATAA+CGG | 0.426659 | 8.4:+16696572 | None:intergenic |
| TGTGAAGTGTGGGGAATTGT+TGG | 0.431406 | 8.4:-16696902 | MS.gene80607:CDS |
| AACAGCAGCATCTGCTGCCA+TGG | 0.433130 | 8.4:+16696155 | None:intergenic |
| GAGATTGATCCTCAAGATAG+TGG | 0.443016 | 8.4:-16696057 | MS.gene80607:CDS |
| AAGGGGTAAGTATGATTATC+CGG | 0.457475 | 8.4:+16697348 | None:intergenic |
| CATGGAGGTTTAGTTGAAGA+AGG | 0.460540 | 8.4:-16696304 | MS.gene80607:CDS |
| GGTTACACTGACAAAACAAC+TGG | 0.461713 | 8.4:-16695839 | MS.gene80607:CDS |
| TTACTATGCTACTCTGGTGT+GGG | 0.463814 | 8.4:-16697215 | MS.gene80607:CDS |
| CAAATGAGATTACGATGATT+GGG | 0.467769 | 8.4:-16697044 | MS.gene80607:CDS |
| CCTTGCAATATTACCACACT+TGG | 0.470027 | 8.4:+16696504 | None:intergenic |
| CTGGACACTGCCACTGATGA+TGG | 0.471405 | 8.4:+16696732 | None:intergenic |
| CAAAATCTATAGGGAAATGA+AGG | 0.471783 | 8.4:-16697082 | MS.gene80607:CDS |
| TAATATTGCAAGGGCGCTCC+AGG | 0.473104 | 8.4:-16696494 | MS.gene80607:CDS |
| CCAAGAAAGGTGATCTCATC+AGG | 0.476254 | 8.4:+16696346 | None:intergenic |
| ACCTGGACAGCCGTGATTTG+TGG | 0.477231 | 8.4:-16696439 | MS.gene80607:CDS |
| GCTAGGTGGTACGTTGAAAC+CGG | 0.477972 | 8.4:-16697367 | MS.gene80607:CDS |
| CAGCTAGGAGCACTTGATGT+TGG | 0.479265 | 8.4:-16696607 | MS.gene80607:CDS |
| TGAATGGATTTATGAATGTC+TGG | 0.480609 | 8.4:-16695860 | MS.gene80607:CDS |
| TATCACATCCACAGTCTGAA+TGG | 0.489495 | 8.4:-16695876 | MS.gene80607:CDS |
| CCTGGAATTCAATGATTACT+GGG | 0.492008 | 8.4:-16697137 | MS.gene80607:CDS |
| AGCTGATAACACACCAAGAA+AGG | 0.495854 | 8.4:+16696333 | None:intergenic |
| GTGTTATCAGCTTGTTGTCA+TGG | 0.500210 | 8.4:-16696322 | MS.gene80607:CDS |
| TGCAGCTTGGTTGAGATCAA+TGG | 0.503779 | 8.4:-16695928 | MS.gene80607:CDS |
| TTGTTGCTTAAAGGTTATTG+TGG | 0.505082 | 8.4:-16697327 | MS.gene80607:CDS |
| CATCATCAGTGGCAGTGTCC+AGG | 0.505156 | 8.4:-16696731 | MS.gene80607:CDS |
| GTCGACTAGTGCAGTTCCTA+AGG | 0.511156 | 8.4:+16696534 | None:intergenic |
| GAAGCATGGTAAAGAGGCAT+TGG | 0.513498 | 8.4:-16696707 | MS.gene80607:CDS |
| GTGTGAGAGACCTCGTAACC+TGG | 0.514567 | 8.4:-16697155 | MS.gene80607:CDS |
| GAGGAATCTCTTCGAAAACC+TGG | 0.525302 | 8.4:+16696476 | None:intergenic |
| CATCGATTACTATGCTACTC+TGG | 0.526216 | 8.4:-16697221 | MS.gene80607:CDS |
| ATTAGAGGGTATGTTGAGAG+TGG | 0.526700 | 8.4:-16697429 | MS.gene80607:CDS |
| CTGTCAGCATGTTCACAGCT+AGG | 0.528137 | 8.4:-16696622 | MS.gene80607:CDS |
| TGGCATTGTGCACGAGTTCG+TGG | 0.528748 | 8.4:-16695908 | MS.gene80607:CDS |
| GCATTCCAAGAAAAGACATT+CGG | 0.529470 | 8.4:+16697456 | None:intergenic |
| ACCACAAATCACGGCTGTCC+AGG | 0.530596 | 8.4:+16696438 | None:intergenic |
| GGATTCACCGTTATATTGAA+AGG | 0.531989 | 8.4:-16696579 | MS.gene80607:CDS |
| CTAGCTGTGAACATGCTGAC+AGG | 0.539754 | 8.4:+16696623 | None:intergenic |
| CTTGGAATGCGGCAATTAGA+GGG | 0.543616 | 8.4:-16697443 | MS.gene80607:CDS |
| GGCAGTGTCCAGGCGAAGCA+TGG | 0.551609 | 8.4:-16696721 | MS.gene80607:CDS |
| ATCTCAACCAAGCTGCAACC+AGG | 0.553814 | 8.4:+16695934 | None:intergenic |
| TTGAGAGTGGAAATATAGAA+GGG | 0.555846 | 8.4:-16697416 | MS.gene80607:CDS |
| GGTCAATCTTTAAGTTGTGT+CGG | 0.556443 | 8.4:-16697306 | MS.gene80607:CDS |
| GAAGACTCCTGGTTGCAGCT+TGG | 0.560317 | 8.4:-16695941 | MS.gene80607:CDS |
| CCAAGTGTGGTAATATTGCA+AGG | 0.561717 | 8.4:-16696504 | MS.gene80607:CDS |
| ACAGCAGCATCTGCTGCCAT+GGG | 0.562415 | 8.4:+16696156 | None:intergenic |
| GTGTCGGTCTTGGTATACTT+GGG | 0.564134 | 8.4:-16697290 | MS.gene80607:CDS |
| CCAGGCGAAGCATGGTAAAG+AGG | 0.568134 | 8.4:-16696713 | MS.gene80607:CDS |
| AAAGGAGTAGAGAAGACTCC+TGG | 0.576572 | 8.4:-16695952 | MS.gene80607:CDS |
| TGTGCACGAGTTCGTGGTGA+GGG | 0.580518 | 8.4:-16695902 | MS.gene80607:CDS |
| TGGACATGTATGTGAAGTGT+GGG | 0.583192 | 8.4:-16696912 | MS.gene80607:CDS |
| CAATAACCTTTAAGCAACAA+GGG | 0.586934 | 8.4:+16697330 | None:intergenic |
| AGATTGATCCTCAAGATAGT+GGG | 0.587997 | 8.4:-16696056 | MS.gene80607:CDS |
| TGGGTGTGTTAAAAGGGGAC+TGG | 0.588375 | 8.4:-16697118 | MS.gene80607:CDS |
| ATTACTATGCTACTCTGGTG+TGG | 0.593866 | 8.4:-16697216 | MS.gene80607:CDS |
| CATTGTTACATCGAAGAACA+CGG | 0.597837 | 8.4:-16696970 | MS.gene80607:CDS |
| TTGTGCACGAGTTCGTGGTG+AGG | 0.604121 | 8.4:-16695903 | MS.gene80607:CDS |
| GGAAGGAGGCAAGGAGTGCA+AGG | 0.604460 | 8.4:-16695990 | MS.gene80607:CDS |
| AAGTGCTAAACCACAAATCA+CGG | 0.604520 | 8.4:+16696429 | None:intergenic |
| TTTGAACATTTCCATAAACA+CGG | 0.604987 | 8.4:+16696109 | None:intergenic |
| CCACTGATGATGGCATTCCA+CGG | 0.606789 | 8.4:+16696742 | None:intergenic |
| TCTTGTTTCATGGACTACAA+TGG | 0.607915 | 8.4:-16696842 | MS.gene80607:CDS |
| CTGGTGTGGGGAGTTGAGTG+TGG | 0.611886 | 8.4:-16697202 | MS.gene80607:CDS |
| CAGAAAAGAGTGTTGTGCCG+TGG | 0.613028 | 8.4:-16696759 | MS.gene80607:CDS |
| ACGAGTTCTATTTGATAACA+TGG | 0.614763 | 8.4:-16696875 | MS.gene80607:CDS |
| ACAATAACCTTTAAGCAACA+AGG | 0.620128 | 8.4:+16697329 | None:intergenic |
| TCCATAAGTGCATTAGTGAG+TGG | 0.620138 | 8.4:+16696931 | None:intergenic |
| ACATAGTTCCCACTATCTTG+AGG | 0.623642 | 8.4:+16696048 | None:intergenic |
| GAAATGTTCAAATTGGTGAG+AGG | 0.634026 | 8.4:-16696098 | MS.gene80607:CDS |
| TCATAAATCCATTCAGACTG+TGG | 0.634716 | 8.4:+16695868 | None:intergenic |
| ATTACTGGGTGTGTTAAAAG+GGG | 0.635775 | 8.4:-16697123 | MS.gene80607:CDS |
| TACTATGCTACTCTGGTGTG+GGG | 0.646790 | 8.4:-16697214 | MS.gene80607:CDS |
| CAAGTGTGGTAATATTGCAA+GGG | 0.647317 | 8.4:-16696503 | MS.gene80607:CDS |
| GTCGACATGTATGCCAAGTG+TGG | 0.648141 | 8.4:-16696517 | MS.gene80607:CDS |
| TCATTGAATTCCAGGTTACG+AGG | 0.650979 | 8.4:+16697145 | None:intergenic |
| ATGGACATGTATGTGAAGTG+TGG | 0.651680 | 8.4:-16696913 | MS.gene80607:CDS |
| CCGTGGAATGCCATCATCAG+TGG | 0.663547 | 8.4:-16696742 | MS.gene80607:CDS |
| AATAACCTTTAAGCAACAAG+GGG | 0.663744 | 8.4:+16697331 | None:intergenic |
| TAAAAGGGGACTGGCAAACG+AGG | 0.676244 | 8.4:-16697109 | MS.gene80607:CDS |
| TTGTATAAGAGAATGTTGCT+AGG | 0.680343 | 8.4:-16697384 | MS.gene80607:CDS |
| TTATCAGCTTGTTGTCATGG+AGG | 0.694540 | 8.4:-16696319 | MS.gene80607:CDS |
| ATAAAGCACAGAATGCAACA+AGG | 0.695796 | 8.4:+16697532 | None:intergenic |
| TATAAGAGAATGTTGCTAGG+TGG | 0.707791 | 8.4:-16697381 | MS.gene80607:CDS |
| GCTTGCTAGCATGTACAGTG+AGG | 0.711905 | 8.4:-16696022 | MS.gene80607:CDS |
| GGACATGTATGTGAAGTGTG+GGG | 0.726781 | 8.4:-16696911 | MS.gene80607:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTCAAAAATAATTCATAT+TGG | - | chr8.4:16696990-16697009 | MS.gene80607:CDS | 15.0% |
| !!! | ATGAATTATTTTTGAGAAAT+AGG | + | chr8.4:16696988-16697007 | None:intergenic | 15.0% |
| ! | AGGAAACTAATGAATGATAA+AGG | - | chr8.4:16697396-16697415 | MS.gene80607:CDS | 25.0% |
| ! | ATGAGTAGTATTTAAGCTTA+GGG | + | chr8.4:16697130-16697149 | None:intergenic | 25.0% |
| ! | GTTTATGGAAATGTTCAAAT+TGG | - | chr8.4:16697261-16697280 | MS.gene80607:CDS | 25.0% |
| ! | TCATTTCGGAAAAATATTTG+TGG | + | chr8.4:16697088-16697107 | None:intergenic | 25.0% |
| ! | TTTGAACATTTCCATAAACA+CGG | + | chr8.4:16697260-16697279 | None:intergenic | 25.0% |
| !! | ATTGAATTTAGAGCTCATTT+CGG | + | chr8.4:16697102-16697121 | None:intergenic | 25.0% |
| !! | TTAACCATAGTTACTTTATC+AGG | + | chr8.4:16696720-16696739 | None:intergenic | 25.0% |
| !!! | TTTTACTAGTTTGCATTTCA+TGG | + | chr8.4:16696692-16696711 | None:intergenic | 25.0% |
| AATAACCTTTAAGCAACAAG+GGG | + | chr8.4:16696038-16696057 | None:intergenic | 30.0% | |
| ACAATAACCTTTAAGCAACA+AGG | + | chr8.4:16696040-16696059 | None:intergenic | 30.0% | |
| AGAACCTGATAAAGTAACTA+TGG | - | chr8.4:16696713-16696732 | MS.gene80607:CDS | 30.0% | |
| CAAAATCTATAGGGAAATGA+AGG | - | chr8.4:16696284-16696303 | MS.gene80607:CDS | 30.0% | |
| CAAATGAGATTACGATGATT+GGG | - | chr8.4:16696322-16696341 | MS.gene80607:CDS | 30.0% | |
| CAATAACCTTTAAGCAACAA+GGG | + | chr8.4:16696039-16696058 | None:intergenic | 30.0% | |
| CAGGTCAAAAAATTTCTTTG+AGG | + | chr8.4:16696912-16696931 | None:intergenic | 30.0% | |
| CATGAGTAGTATTTAAGCTT+AGG | + | chr8.4:16697131-16697150 | None:intergenic | 30.0% | |
| GATTGTGCCTTTCAATATAA+CGG | + | chr8.4:16696797-16696816 | None:intergenic | 30.0% | |
| TGAGTAGTATTTAAGCTTAG+GGG | + | chr8.4:16697129-16697148 | None:intergenic | 30.0% | |
| TTGAGAGTGGAAATATAGAA+GGG | - | chr8.4:16695950-16695969 | MS.gene80607:CDS | 30.0% | |
| TTGTATAAGAGAATGTTGCT+AGG | - | chr8.4:16695982-16696001 | MS.gene80607:CDS | 30.0% | |
| ! | ACGAGTTCTATTTGATAACA+TGG | - | chr8.4:16696491-16696510 | MS.gene80607:CDS | 30.0% |
| ! | ACTTGTTAAAAATATGCCCA+TGG | - | chr8.4:16697194-16697213 | MS.gene80607:CDS | 30.0% |
| ! | TGAATGGATTTATGAATGTC+TGG | - | chr8.4:16697506-16697525 | MS.gene80607:CDS | 30.0% |
| ! | TTGTTGCTTAAAGGTTATTG+TGG | - | chr8.4:16696039-16696058 | MS.gene80607:CDS | 30.0% |
| !!! | CTCAAAGAAATTTTTTGACC+TGG | - | chr8.4:16696910-16696929 | MS.gene80607:CDS | 30.0% |
| AACATCCAGAAAACCAAATC+TGG | + | chr8.4:16696562-16696581 | None:intergenic | 35.0% | |
| AAGGGGTAAGTATGATTATC+CGG | + | chr8.4:16696021-16696040 | None:intergenic | 35.0% | |
| AAGTGCTAAACCACAAATCA+CGG | + | chr8.4:16696940-16696959 | None:intergenic | 35.0% | |
| ACCTGGAATTCAATGATTAC+TGG | - | chr8.4:16696228-16696247 | MS.gene80607:intron | 35.0% | |
| ACGAGGCTATCAAAATCTAT+AGG | - | chr8.4:16696274-16696293 | MS.gene80607:CDS | 35.0% | |
| AGATTGATCCTCAAGATAGT+GGG | - | chr8.4:16697310-16697329 | MS.gene80607:CDS | 35.0% | |
| ATAAAGCACAGAATGCAACA+AGG | + | chr8.4:16695837-16695856 | None:intergenic | 35.0% | |
| ATTACTGGGTGTGTTAAAAG+GGG | - | chr8.4:16696243-16696262 | MS.gene80607:intron | 35.0% | |
| ATTTGTGGTTTAGCACTTCA+TGG | - | chr8.4:16696942-16696961 | MS.gene80607:CDS | 35.0% | |
| CAAGTGTGGTAATATTGCAA+GGG | - | chr8.4:16696863-16696882 | MS.gene80607:CDS | 35.0% | |
| CATTGTTACATCGAAGAACA+CGG | - | chr8.4:16696396-16696415 | MS.gene80607:CDS | 35.0% | |
| CCAAATGAGATTACGATGAT+TGG | - | chr8.4:16696321-16696340 | MS.gene80607:CDS | 35.0% | |
| CCAATCATCGTAATCTCATT+TGG | + | chr8.4:16696324-16696343 | None:intergenic | 35.0% | |
| CCTGGAATTCAATGATTACT+GGG | - | chr8.4:16696229-16696248 | MS.gene80607:intron | 35.0% | |
| CGAGGCTATCAAAATCTATA+GGG | - | chr8.4:16696275-16696294 | MS.gene80607:CDS | 35.0% | |
| GAAATGTTCAAATTGGTGAG+AGG | - | chr8.4:16697268-16697287 | MS.gene80607:CDS | 35.0% | |
| GATTACTGGGTGTGTTAAAA+GGG | - | chr8.4:16696242-16696261 | MS.gene80607:intron | 35.0% | |
| GCATTCCAAGAAAAGACATT+CGG | + | chr8.4:16695913-16695932 | None:intergenic | 35.0% | |
| GCTTAAATACTACTCATGCA+TGG | - | chr8.4:16697133-16697152 | MS.gene80607:CDS | 35.0% | |
| GGATTCACCGTTATATTGAA+AGG | - | chr8.4:16696787-16696806 | MS.gene80607:CDS | 35.0% | |
| GTTGAGAGTGGAAATATAGA+AGG | - | chr8.4:16695949-16695968 | MS.gene80607:CDS | 35.0% | |
| TAAATACTACTCATGCATGG+TGG | - | chr8.4:16697136-16697155 | MS.gene80607:CDS | 35.0% | |
| TATAAGAGAATGTTGCTAGG+TGG | - | chr8.4:16695985-16696004 | MS.gene80607:CDS | 35.0% | |
| TCATAAATCCATTCAGACTG+TGG | + | chr8.4:16697501-16697520 | None:intergenic | 35.0% | |
| TGATTACTGGGTGTGTTAAA+AGG | - | chr8.4:16696241-16696260 | MS.gene80607:intron | 35.0% | |
| ! | AAGAACCGAATGTCTTTTCT+TGG | - | chr8.4:16695905-16695924 | MS.gene80607:CDS | 35.0% |
| ! | GAATGTCTTTTCTTGGAATG+CGG | - | chr8.4:16695912-16695931 | MS.gene80607:CDS | 35.0% |
| ! | TCTTGTTTCATGGACTACAA+TGG | - | chr8.4:16696524-16696543 | MS.gene80607:CDS | 35.0% |
| ! | TTCTTTGTTTGCCGTGTTTA+TGG | - | chr8.4:16697246-16697265 | MS.gene80607:CDS | 35.0% |
| !! | GGTCAATCTTTAAGTTGTGT+CGG | - | chr8.4:16696060-16696079 | MS.gene80607:CDS | 35.0% |
| !! | TCATGGACTACAATGGTTTT+GGG | - | chr8.4:16696531-16696550 | MS.gene80607:CDS | 35.0% |
| !! | TTCATGGACTACAATGGTTT+TGG | - | chr8.4:16696530-16696549 | MS.gene80607:CDS | 35.0% |
| !!! | ATATGCCAGATTTGGTTTTC+TGG | - | chr8.4:16696554-16696573 | MS.gene80607:CDS | 35.0% |
| ACATAGTTCCCACTATCTTG+AGG | + | chr8.4:16697321-16697340 | None:intergenic | 40.0% | |
| AGCTGATAACACACCAAGAA+AGG | + | chr8.4:16697036-16697055 | None:intergenic | 40.0% | |
| ATGGACATGTATGTGAAGTG+TGG | - | chr8.4:16696453-16696472 | MS.gene80607:CDS | 40.0% | |
| ATTACTATGCTACTCTGGTG+TGG | - | chr8.4:16696150-16696169 | MS.gene80607:CDS | 40.0% | |
| CAGTTGCAAGATTTGACTCT+TGG | - | chr8.4:16696363-16696382 | MS.gene80607:CDS | 40.0% | |
| CATGGAGGTTTAGTTGAAGA+AGG | - | chr8.4:16697062-16697081 | MS.gene80607:CDS | 40.0% | |
| CCAAGTGTGGTAATATTGCA+AGG | - | chr8.4:16696862-16696881 | MS.gene80607:CDS | 40.0% | |
| CCCAGTAATCATTGAATTCC+AGG | + | chr8.4:16696232-16696251 | None:intergenic | 40.0% | |
| CCTTGCAATATTACCACACT+TGG | + | chr8.4:16696865-16696884 | None:intergenic | 40.0% | |
| CTTTCTATTGATGTCGCCTT+AGG | - | chr8.4:16696816-16696835 | MS.gene80607:CDS | 40.0% | |
| GAGATTGATCCTCAAGATAG+TGG | - | chr8.4:16697309-16697328 | MS.gene80607:CDS | 40.0% | |
| GAGCACTTGATGTTGGAATA+TGG | - | chr8.4:16696766-16696785 | MS.gene80607:CDS | 40.0% | |
| GGTTACACTGACAAAACAAC+TGG | - | chr8.4:16697527-16697546 | MS.gene80607:CDS | 40.0% | |
| TATCACATCCACAGTCTGAA+TGG | - | chr8.4:16697490-16697509 | MS.gene80607:CDS | 40.0% | |
| TCATTGAATTCCAGGTTACG+AGG | + | chr8.4:16696224-16696243 | None:intergenic | 40.0% | |
| TCCACTCACTAATGCACTTA+TGG | - | chr8.4:16696434-16696453 | MS.gene80607:CDS | 40.0% | |
| TCCATAAGTGCATTAGTGAG+TGG | + | chr8.4:16696438-16696457 | None:intergenic | 40.0% | |
| TGGACATGTATGTGAAGTGT+GGG | - | chr8.4:16696454-16696473 | MS.gene80607:CDS | 40.0% | |
| TGTACAGTGAGGCAAAAATG+TGG | - | chr8.4:16697355-16697374 | MS.gene80607:CDS | 40.0% | |
| TTACTATGCTACTCTGGTGT+GGG | - | chr8.4:16696151-16696170 | MS.gene80607:CDS | 40.0% | |
| TTGGGCATGTGTTGAAGTTT+GGG | - | chr8.4:16696094-16696113 | MS.gene80607:CDS | 40.0% | |
| ! | ACTTACCCCTTGTTGCTTAA+AGG | - | chr8.4:16696030-16696049 | MS.gene80607:CDS | 40.0% |
| ! | ATTAGAGGGTATGTTGAGAG+TGG | - | chr8.4:16695937-16695956 | MS.gene80607:CDS | 40.0% |
| ! | CACAGAAGACTCTTGTTTCA+TGG | - | chr8.4:16696514-16696533 | MS.gene80607:CDS | 40.0% |
| ! | CATCGATTACTATGCTACTC+TGG | - | chr8.4:16696145-16696164 | MS.gene80607:CDS | 40.0% |
| !! | GTGTTATCAGCTTGTTGTCA+TGG | - | chr8.4:16697044-16697063 | MS.gene80607:CDS | 40.0% |
| !! | TCTTTAAGTTGTGTCGGTCT+TGG | - | chr8.4:16696066-16696085 | MS.gene80607:CDS | 40.0% |
| !! | TTATCAGCTTGTTGTCATGG+AGG | - | chr8.4:16697047-16697066 | MS.gene80607:CDS | 40.0% |
| !!! | GTTTTGGGATATGCCAGATT+TGG | - | chr8.4:16696546-16696565 | MS.gene80607:CDS | 40.0% |
| AAAGGAGTAGAGAAGACTCC+TGG | - | chr8.4:16697414-16697433 | MS.gene80607:CDS | 45.0% | |
| CAAAAATGTGGAAGGAGGCA+AGG | - | chr8.4:16697367-16697386 | MS.gene80607:CDS | 45.0% | |
| CAGTGAGGCAAAAATGTGGA+AGG | - | chr8.4:16697359-16697378 | MS.gene80607:CDS | 45.0% | |
| CCAAGAAAGGTGATCTCATC+AGG | + | chr8.4:16697023-16697042 | None:intergenic | 45.0% | |
| CCTGATGAGATCACCTTTCT+TGG | - | chr8.4:16697020-16697039 | MS.gene80607:CDS | 45.0% | |
| CTCCAAATGACCCTCCTAAA+AGG | + | chr8.4:16697163-16697182 | None:intergenic | 45.0% | |
| CTTGGAATGCGGCAATTAGA+GGG | - | chr8.4:16695923-16695942 | MS.gene80607:CDS | 45.0% | |
| CTTGGGCATGTGTTGAAGTT+TGG | - | chr8.4:16696093-16696112 | MS.gene80607:CDS | 45.0% | |
| GAGGAATCTCTTCGAAAACC+TGG | + | chr8.4:16696893-16696912 | None:intergenic | 45.0% | |
| GGACATGTATGTGAAGTGTG+GGG | - | chr8.4:16696455-16696474 | MS.gene80607:CDS | 45.0% | |
| TACTATGCTACTCTGGTGTG+GGG | - | chr8.4:16696152-16696171 | MS.gene80607:CDS | 45.0% | |
| TCTTGGAATGCGGCAATTAG+AGG | - | chr8.4:16695922-16695941 | MS.gene80607:CDS | 45.0% | |
| TGAGGCAAAAATGTGGAAGG+AGG | - | chr8.4:16697362-16697381 | MS.gene80607:CDS | 45.0% | |
| TGCAGCTTGGTTGAGATCAA+TGG | - | chr8.4:16697438-16697457 | MS.gene80607:CDS | 45.0% | |
| TGTGAAGTGTGGGGAATTGT+TGG | - | chr8.4:16696464-16696483 | MS.gene80607:CDS | 45.0% | |
| ! | GAAGCATGGTAAAGAGGCAT+TGG | - | chr8.4:16696659-16696678 | MS.gene80607:CDS | 45.0% |
| ! | GTGTCGGTCTTGGTATACTT+GGG | - | chr8.4:16696076-16696095 | MS.gene80607:CDS | 45.0% |
| ! | TGTGTCGGTCTTGGTATACT+TGG | - | chr8.4:16696075-16696094 | MS.gene80607:CDS | 45.0% |
| !! | CTTTTAGGAGGGTCATTTGG+AGG | - | chr8.4:16697161-16697180 | MS.gene80607:CDS | 45.0% |
| !! | GACCTTTTAGGAGGGTCATT+TGG | - | chr8.4:16697158-16697177 | MS.gene80607:CDS | 45.0% |
| !!! | TCATGCATGGTGGACCTTTT+AGG | - | chr8.4:16697146-16697165 | MS.gene80607:CDS | 45.0% |
| ATCTCAACCAAGCTGCAACC+AGG | + | chr8.4:16697435-16697454 | None:intergenic | 50.0% | |
| CTAGCTGTGAACATGCTGAC+AGG | + | chr8.4:16696746-16696765 | None:intergenic | 50.0% | |
| CTGTCAGCATGTTCACAGCT+AGG | - | chr8.4:16696744-16696763 | MS.gene80607:CDS | 50.0% | |
| GCTAGGTGGTACGTTGAAAC+CGG | - | chr8.4:16695999-16696018 | MS.gene80607:CDS | 50.0% | |
| GTCGACATGTATGCCAAGTG+TGG | - | chr8.4:16696849-16696868 | MS.gene80607:CDS | 50.0% | |
| GTCGACTAGTGCAGTTCCTA+AGG | + | chr8.4:16696835-16696854 | None:intergenic | 50.0% | |
| TGGGTGTGTTAAAAGGGGAC+TGG | - | chr8.4:16696248-16696267 | MS.gene80607:intron | 50.0% | |
| ! | CACGGCACAACACTCTTTTC+TGG | + | chr8.4:16696609-16696628 | None:intergenic | 50.0% |
| ! | GCTTGCTAGCATGTACAGTG+AGG | - | chr8.4:16697344-16697363 | MS.gene80607:CDS | 50.0% |
| ! | TAAAAGGGGACTGGCAAACG+AGG | - | chr8.4:16696257-16696276 | MS.gene80607:intron | 50.0% |
| !! | CAGAAAAGAGTGTTGTGCCG+TGG | - | chr8.4:16696607-16696626 | MS.gene80607:CDS | 50.0% |
| !! | CAGCTAGGAGCACTTGATGT+TGG | - | chr8.4:16696759-16696778 | MS.gene80607:CDS | 50.0% |
| !! | CCACTGATGATGGCATTCCA+CGG | + | chr8.4:16696627-16696646 | None:intergenic | 50.0% |
| !! | TAATATTGCAAGGGCGCTCC+AGG | - | chr8.4:16696872-16696891 | MS.gene80607:CDS | 50.0% |
| !!! | GCAGCAGATGCTGCTGTTTT+GGG | - | chr8.4:16697216-16697235 | MS.gene80607:CDS | 50.0% |
| !!! | GCATGGTGGACCTTTTAGGA+GGG | - | chr8.4:16697150-16697169 | MS.gene80607:CDS | 50.0% |
| !!! | TGCATGGTGGACCTTTTAGG+AGG | - | chr8.4:16697149-16697168 | MS.gene80607:CDS | 50.0% |
| AACAGCAGCATCTGCTGCCA+TGG | + | chr8.4:16697214-16697233 | None:intergenic | 55.0% | |
| ACAGCAGCATCTGCTGCCAT+GGG | + | chr8.4:16697213-16697232 | None:intergenic | 55.0% | |
| ACCACAAATCACGGCTGTCC+AGG | + | chr8.4:16696931-16696950 | None:intergenic | 55.0% | |
| ACCTGGACAGCCGTGATTTG+TGG | - | chr8.4:16696927-16696946 | MS.gene80607:CDS | 55.0% | |
| CATCATCAGTGGCAGTGTCC+AGG | - | chr8.4:16696635-16696654 | MS.gene80607:CDS | 55.0% | |
| CCAGGCGAAGCATGGTAAAG+AGG | - | chr8.4:16696653-16696672 | MS.gene80607:CDS | 55.0% | |
| CCGTGGAATGCCATCATCAG+TGG | - | chr8.4:16696624-16696643 | MS.gene80607:CDS | 55.0% | |
| CCTCTTTACCATGCTTCGCC+TGG | + | chr8.4:16696656-16696675 | None:intergenic | 55.0% | |
| CTGGACACTGCCACTGATGA+TGG | + | chr8.4:16696637-16696656 | None:intergenic | 55.0% | |
| GAAGACTCCTGGTTGCAGCT+TGG | - | chr8.4:16697425-16697444 | MS.gene80607:CDS | 55.0% | |
| GTGTGAGAGACCTCGTAACC+TGG | - | chr8.4:16696211-16696230 | MS.gene80607:intron | 55.0% | |
| TGGCATTGTGCACGAGTTCG+TGG | - | chr8.4:16697458-16697477 | MS.gene80607:CDS | 55.0% | |
| TGTGCACGAGTTCGTGGTGA+GGG | - | chr8.4:16697464-16697483 | MS.gene80607:CDS | 55.0% | |
| TTGTGCACGAGTTCGTGGTG+AGG | - | chr8.4:16697463-16697482 | MS.gene80607:CDS | 55.0% | |
| !! | GGCAGCAGATGCTGCTGTTT+TGG | - | chr8.4:16697215-16697234 | MS.gene80607:CDS | 55.0% |
| CTGGTGTGGGGAGTTGAGTG+TGG | - | chr8.4:16696164-16696183 | MS.gene80607:CDS | 60.0% | |
| ! | GGAAGGAGGCAAGGAGTGCA+AGG | - | chr8.4:16697376-16697395 | MS.gene80607:CDS | 60.0% |
| GGCAGTGTCCAGGCGAAGCA+TGG | - | chr8.4:16696645-16696664 | MS.gene80607:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 16695819 | 16697569 | 16695819 | ID=MS.gene80607 |
| chr8.4 | mRNA | 16695819 | 16697569 | 16695819 | ID=MS.gene80607.t1;Parent=MS.gene80607 |
| chr8.4 | exon | 16696267 | 16697569 | 16696267 | ID=MS.gene80607.t1.exon1;Parent=MS.gene80607.t1 |
| chr8.4 | CDS | 16696267 | 16697569 | 16696267 | ID=cds.MS.gene80607.t1;Parent=MS.gene80607.t1 |
| chr8.4 | exon | 16695819 | 16696220 | 16695819 | ID=MS.gene80607.t1.exon2;Parent=MS.gene80607.t1 |
| chr8.4 | CDS | 16695819 | 16696220 | 16695819 | ID=cds.MS.gene80607.t1;Parent=MS.gene80607.t1 |
| Gene Sequence |
| Protein sequence |
