AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049159


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049159.t1 MTR_8g061970 61.644 292 20 7 36 236 628 918 2.34e-96 308
MS.gene049159.t1 MTR_8g061970 88.235 34 4 0 1 34 423 456 1.71e-12 67.0
MS.gene049159.t1 MTR_2g436710 57.534 292 30 8 36 236 633 921 4.54e-86 279
MS.gene049159.t1 MTR_2g436730 56.803 294 34 7 36 238 631 922 5.93e-85 276
MS.gene049159.t1 MTR_2g436680 56.597 288 36 6 36 236 633 918 2.21e-79 260
MS.gene049159.t1 MTR_1g088680 41.034 290 82 6 36 236 642 931 1.22e-52 183
MS.gene049159.t1 MTR_3g056700 42.211 199 62 3 39 184 426 624 2.70e-39 145
MS.gene049159.t1 MTR_7g098690 39.604 202 69 3 36 184 616 817 1.69e-36 137
MS.gene049159.t1 MTR_5g033030 36.154 260 112 5 40 245 616 875 3.07e-36 136
MS.gene049159.t1 MTR_8g015970 40.306 196 64 3 42 184 419 614 1.09e-35 134
MS.gene049159.t1 MTR_8g015970 40.306 196 64 3 42 184 423 618 1.15e-35 134
MS.gene049159.t1 MTR_5g094830 37.131 237 96 3 40 223 627 863 1.25e-35 134
MS.gene049159.t1 MTR_8g015970 40.306 196 64 3 42 184 419 614 1.32e-35 134
MS.gene049159.t1 MTR_8g015970 40.306 196 64 3 42 184 423 618 1.44e-35 134
MS.gene049159.t1 MTR_1g069450 34.375 256 105 5 40 232 640 895 3.14e-35 133
MS.gene049159.t1 MTR_8g015980 40.816 196 63 3 42 184 595 790 3.18e-35 133
MS.gene049159.t1 MTR_8g040620 40.500 200 66 3 38 184 594 793 4.25e-35 132
MS.gene049159.t1 MTR_8g080050 40.099 202 63 4 41 184 581 782 1.77e-34 131
MS.gene049159.t1 MTR_5g094810 37.238 239 93 5 40 223 612 848 2.16e-34 130
MS.gene049159.t1 MTR_8g016070 36.620 213 82 3 42 201 605 817 3.04e-34 130
MS.gene049159.t1 MTR_6g084320 39.394 198 67 3 36 180 579 776 3.09e-34 130
MS.gene049159.t1 MTR_6g084320 39.394 198 67 3 36 180 579 776 3.98e-34 130
MS.gene049159.t1 MTR_8g040170 40.500 200 66 3 38 184 404 603 4.65e-34 130
MS.gene049159.t1 MTR_8g040170 40.500 200 66 3 38 184 244 443 4.67e-34 129
MS.gene049159.t1 MTR_8g016020 39.500 200 68 3 38 184 373 572 6.27e-34 129
MS.gene049159.t1 MTR_5g033320 37.657 239 92 5 40 223 607 843 7.88e-34 129
MS.gene049159.t1 MTR_3g056705 39.594 197 66 3 41 184 675 871 1.69e-33 128
MS.gene049159.t1 MTR_1g099280 39.086 197 66 3 42 184 642 838 2.18e-33 128
MS.gene049159.t1 MTR_1g099280 39.086 197 66 3 42 184 617 813 2.27e-33 127
MS.gene049159.t1 MTR_1g099280 39.086 197 66 3 42 184 617 813 2.47e-33 127
MS.gene049159.t1 MTR_6g034230 34.066 273 104 6 42 238 620 892 4.55e-32 124
MS.gene049159.t1 MTR_6g034755 36.364 209 76 4 33 184 614 822 8.17e-32 123
MS.gene049159.t1 MTR_6g034270 34.615 234 100 3 42 222 437 670 9.41e-31 120
MS.gene049159.t1 MTR_6g034310 32.955 264 114 6 38 238 241 504 3.15e-30 119
MS.gene049159.t1 MTR_6g034350 35.714 196 73 3 42 184 627 822 3.96e-30 118
MS.gene049159.t1 MTR_6g034310 32.955 264 114 6 38 238 599 862 5.86e-30 118
MS.gene049159.t1 MTR_6g034265 32.692 260 112 4 42 238 618 877 6.09e-30 118
MS.gene049159.t1 MTR_6g034310 32.955 264 114 6 38 238 599 862 6.14e-30 118
MS.gene049159.t1 MTR_6g034220 32.677 254 114 5 35 231 608 861 6.74e-29 115
MS.gene049159.t1 MTR_0019s0020 33.047 233 103 3 42 221 570 802 9.84e-29 114
MS.gene049159.t1 MTR_0019s0020 33.047 233 103 3 42 221 570 802 1.12e-28 114
MS.gene049159.t1 MTR_0019s0020 33.047 233 103 3 42 221 570 802 1.17e-28 114
MS.gene049159.t1 MTR_0019s0020 33.047 233 103 3 42 221 570 802 1.29e-28 114
MS.gene049159.t1 MTR_0196s0020 34.177 237 103 3 42 225 620 856 1.33e-28 114
MS.gene049159.t1 MTR_0019s0020 33.047 233 103 3 42 221 570 802 1.55e-28 114
MS.gene049159.t1 MTR_6g034335 35.266 207 77 4 35 184 613 819 1.74e-27 110
MS.gene049159.t1 MTR_3g056675 42.105 152 72 4 40 184 429 571 1.08e-24 102
MS.gene049159.t1 MTR_3g011820 29.960 247 117 5 42 232 652 898 7.51e-24 100
MS.gene049159.t1 MTR_8g009640 49.474 95 45 1 43 134 266 360 3.05e-22 95.5
MS.gene049159.t1 MTR_2g019020 33.503 197 77 5 42 184 159 355 1.20e-21 94.0
MS.gene049159.t1 MTR_3g011840 29.237 236 111 5 42 221 536 771 1.41e-21 94.0
MS.gene049159.t1 MTR_2g019020 33.503 197 77 5 42 184 431 627 1.48e-21 93.6
MS.gene049159.t1 MTR_2g019020 33.503 197 77 5 42 184 377 573 1.69e-21 93.6
MS.gene049159.t1 MTR_2g019020 33.503 197 77 5 42 184 614 810 2.22e-21 93.2
MS.gene049159.t1 MTR_2g019020 33.503 197 77 5 42 184 614 810 2.27e-21 93.2
MS.gene049159.t1 MTR_2g105190 30.542 203 84 4 36 181 612 814 2.88e-18 84.3
MS.gene049159.t1 MTR_2g105190 31.156 199 80 4 40 181 622 820 3.60e-18 84.0
MS.gene049159.t1 MTR_4g081000 58.000 50 19 1 77 126 34 81 1.27e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049159.t1 AT3G62700 54.187 203 39 4 36 184 631 833 3.65e-57 196
MS.gene049159.t1 AT2G47800 51.244 201 44 4 38 184 635 835 2.30e-52 182
MS.gene049159.t1 AT1G04120 39.899 198 66 3 40 184 584 781 1.26e-36 137
MS.gene049159.t1 AT1G04120 39.899 198 66 3 40 184 619 816 1.30e-36 137
MS.gene049159.t1 AT1G04120 39.899 198 66 3 40 184 619 816 1.48e-36 137
MS.gene049159.t1 AT3G21250 37.736 212 79 3 42 200 181 392 5.21e-33 127
MS.gene049159.t1 AT3G21250 37.736 212 79 3 42 200 181 392 5.21e-33 127
MS.gene049159.t1 AT3G21250 37.736 212 79 3 42 200 603 814 8.32e-33 126
MS.gene049159.t1 AT3G21250 37.736 212 79 3 42 200 597 808 1.02e-32 126
MS.gene049159.t1 AT3G60970 35.317 252 104 5 40 236 211 458 1.80e-32 125
MS.gene049159.t1 AT3G59140 31.148 305 127 6 17 238 553 857 2.50e-32 125
MS.gene049159.t1 AT3G21250 39.247 186 60 3 42 174 597 782 4.37e-29 115
MS.gene049159.t1 AT3G21250 39.247 186 60 3 42 174 603 788 4.72e-29 115
MS.gene049159.t1 AT3G13090 37.190 242 78 5 17 184 554 795 2.29e-27 110
MS.gene049159.t1 AT3G13100 36.364 242 80 5 17 184 332 573 1.77e-26 108
MS.gene049159.t1 AT3G13100 36.364 242 80 5 17 184 577 818 2.73e-26 107
MS.gene049159.t1 AT1G30400 30.651 261 123 7 42 244 613 873 1.19e-24 102
MS.gene049159.t1 AT1G30400 30.651 261 123 7 42 244 613 873 1.19e-24 102
MS.gene049159.t1 AT3G13080 39.899 198 66 3 40 184 637 834 2.40e-24 102
MS.gene049159.t1 AT3G13080 39.899 198 66 3 40 184 637 834 2.50e-24 102
MS.gene049159.t1 AT3G13080 39.899 198 66 3 40 184 637 834 2.50e-24 102
MS.gene049159.t1 AT3G13080 39.899 198 66 3 40 184 637 834 3.60e-24 101
MS.gene049159.t1 AT3G13080 39.899 198 66 3 40 184 637 834 3.60e-24 101
MS.gene049159.t1 AT2G34660 31.120 241 110 6 42 226 326 566 8.26e-24 100
MS.gene049159.t1 AT2G34660 31.120 241 110 6 42 226 613 853 9.68e-24 100
MS.gene049159.t1 AT2G34660 31.120 241 110 6 42 226 613 853 9.68e-24 100
MS.gene049159.t1 AT3G60160 39.899 198 66 3 40 184 627 824 2.28e-23 99.0
MS.gene049159.t1 AT3G60160 39.899 198 66 3 40 184 627 824 2.51e-23 99.0
MS.gene049159.t1 AT3G60160 39.899 198 66 3 40 184 591 788 2.55e-23 99.0
MS.gene049159.t1 AT2G07680 30.049 203 85 4 39 184 560 762 4.54e-21 92.4
MS.gene049159.t1 AT2G07680 30.049 203 85 4 39 184 554 756 4.80e-21 92.4
MS.gene049159.t1 AT2G07680 30.049 203 85 4 39 184 551 753 5.03e-21 92.4
MS.gene049159.t1 AT2G07680 30.049 203 85 4 39 184 576 778 5.09e-21 92.4
MS.gene049159.t1 AT2G07680 30.049 203 85 4 39 184 576 778 5.30e-21 92.0
MS.gene049159.t1 AT2G07680 30.049 203 85 4 39 184 477 679 5.39e-21 92.0
MS.gene049159.t1 AT1G30420 28.049 246 122 5 42 232 614 859 1.29e-19 88.2
MS.gene049159.t1 AT1G30420 28.049 246 122 5 42 232 614 859 1.77e-19 87.8
MS.gene049159.t1 AT1G30410 28.049 246 122 5 42 232 614 859 1.35e-18 85.1
MS.gene049159.t1 AT1G30410 28.049 246 122 5 42 232 499 744 1.38e-18 85.1
MS.gene049159.t1 AT1G30410 28.049 246 122 5 42 232 614 859 1.48e-18 85.1
MS.gene049159.t1 AT1G30410 28.049 246 122 5 42 232 614 859 1.48e-18 85.1
MS.gene049159.t1 AT1G30410 28.049 246 122 5 42 232 614 859 1.48e-18 85.1
MS.gene049159.t1 AT1G30410 28.049 246 122 5 42 232 617 862 1.61e-18 85.1

Find 42 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGGGAAGTCTTCATTAT+TGG 0.276947 4.4:+2192940 MS.gene049159:CDS
TCATTATTGGCTTCTGTGTT+GGG 0.317526 4.4:+2192953 MS.gene049159:CDS
ATCAAAGAAAACATATTGTT+TGG 0.340127 4.4:+2193165 MS.gene049159:CDS
TTCATTATTGGCTTCTGTGT+TGG 0.355071 4.4:+2192952 MS.gene049159:CDS
GCATAATGTTGACTCTATAA+TGG 0.368378 4.4:+2193581 MS.gene049159:CDS
GGGGATCATGCTGCTGTTGT+AGG 0.368568 4.4:+2192908 MS.gene049159:CDS
TGCAATGGCATCAACCATAT+AGG 0.393934 4.4:-2192240 None:intergenic
AGTGCTGTTGATGCTCAAAC+AGG 0.396436 4.4:+2193340 MS.gene049159:intron
GCAATGGCATCAACCATATA+GGG 0.398047 4.4:-2192239 None:intergenic
TGATGCAGCTTCACCCTATA+TGG 0.398891 4.4:+2192226 MS.gene049159:CDS
CTGTACTTGTCCATGTTCAT+TGG 0.402530 4.4:-2193192 None:intergenic
GAAGAGTTGGTAATTAAGAA+AGG 0.412980 4.4:+2192887 MS.gene049159:CDS
AAGACGAGGGAAAGAGAAAC+TGG 0.416163 4.4:+2194220 MS.gene049159:CDS
GTTGTAGGAACTGTTGGTTC+AGG 0.417367 4.4:+2192923 MS.gene049159:CDS
GCAGAAACAAGTGATAAAAC+TGG 0.440634 4.4:+2194068 MS.gene049159:intron
ATTGTTCAGGTCAGAGTTTG+TGG 0.440884 4.4:+2193096 MS.gene049159:intron
GGAGAAATGTTCAAGATCTC+AGG 0.463289 4.4:+2192974 MS.gene049159:CDS
GCTGCTGTTGTAGGAACTGT+TGG 0.467264 4.4:+2192917 MS.gene049159:CDS
CAATGAACATGGACAAGTAC+AGG 0.468748 4.4:+2193193 MS.gene049159:CDS
AAGAGTTGGTAATTAAGAAA+GGG 0.479936 4.4:+2192888 MS.gene049159:CDS
TTGTAGGAACTGTTGGTTCA+GGG 0.483727 4.4:+2192924 MS.gene049159:CDS
TAAAAGATGGGAAATTCTCA+TGG 0.500702 4.4:+2192840 MS.gene049159:CDS
ATGGACAAGTACAGGGAAGA+TGG 0.537055 4.4:+2193201 MS.gene049159:CDS
CATTATGCAAGAAATCAACT+TGG 0.548177 4.4:-2193566 None:intergenic
CGCTCTGAGAGTTGAAGAGT+TGG 0.548780 4.4:+2192874 MS.gene049159:CDS
TTGTGGAACGACGGCGTATG+TGG 0.555883 4.4:+2193113 MS.gene049159:CDS
AGAGTTGGTAATTAAGAAAG+GGG 0.558662 4.4:+2192889 MS.gene049159:CDS
GTTTGGTTTACCAATGAACA+TGG 0.564051 4.4:+2193182 MS.gene049159:CDS
CGTATGTGGCACAAACGTCA+TGG 0.567039 4.4:+2193127 MS.gene049159:CDS
TAGCTGTGGAGATAAAAGAT+GGG 0.595701 4.4:+2192828 MS.gene049159:CDS
GTAGCTGTGGAGATAAAAGA+TGG 0.597997 4.4:+2192827 MS.gene049159:CDS
AATACCGCGCTCTACAATCT+CGG 0.610131 4.4:-2193231 None:intergenic
GAATTGTGATGATGTAGCTG+TGG 0.612079 4.4:+2192814 MS.gene049159:CDS
AGCAAAGCTCATTGAAGACG+AGG 0.613793 4.4:+2194206 MS.gene049159:CDS
AATGCCACAGCTACTTGCAA+TGG 0.614632 4.4:-2192255 None:intergenic
AAAAGATGGGAAATTCTCAT+GGG 0.617479 4.4:+2192841 MS.gene049159:CDS
AATGTTCAAGATCTCAGGAA+AGG 0.621600 4.4:+2192979 MS.gene049159:CDS
AATGAACATGGACAAGTACA+GGG 0.622068 4.4:+2193194 MS.gene049159:CDS
GTGCTGTTGATGCTCAAACA+GGG 0.641702 4.4:+2193341 MS.gene049159:intron
GATGCCATTGCAAGTAGCTG+TGG 0.645802 4.4:+2192251 MS.gene049159:CDS
GCAAAGCTCATTGAAGACGA+GGG 0.661032 4.4:+2194207 MS.gene049159:CDS
GGTCAGAGTTTGTGGAACGA+CGG 0.674490 4.4:+2193104 MS.gene049159:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAATGCAATTTGTTTTT+TGG - chr4.4:2193770-2193789 None:intergenic 15.0%
!! ATATATTGGTATGATAACTT+GGG - chr4.4:2193680-2193699 None:intergenic 20.0%
!! ATCAAAGAAAACATATTGTT+TGG + chr4.4:2193165-2193184 MS.gene049159:CDS 20.0%
!! ATTTACTTGAAAAATTGTTC+AGG + chr4.4:2193083-2193102 MS.gene049159:intron 20.0%
!! TATATATTGGTATGATAACT+TGG - chr4.4:2193681-2193700 None:intergenic 20.0%
!!! AAACAATATGTTTTCTTTGA+TGG - chr4.4:2193166-2193185 None:intergenic 20.0%
!!! AATTTTTCCTATTTCTCTAT+TGG + chr4.4:2193804-2193823 MS.gene049159:intron 20.0%
!!! AGAAAAAACTCAAACATTTT+AGG - chr4.4:2193630-2193649 None:intergenic 20.0%
!! TACCTTTAAAAAATAGTAGC+TGG - chr4.4:2193847-2193866 None:intergenic 25.0%
!!! AAGAGTTGGTAATTAAGAAA+GGG + chr4.4:2192888-2192907 MS.gene049159:CDS 25.0%
!!! ATCTATTAGTATTTTGAACC+GGG + chr4.4:2193900-2193919 MS.gene049159:intron 25.0%
!!! CATCTATTAGTATTTTGAAC+CGG + chr4.4:2193899-2193918 MS.gene049159:intron 25.0%
!!! TACTATTTTGCTGTTAACTT+TGG + chr4.4:2192542-2192561 MS.gene049159:intron 25.0%
!!! TGAGTTTTTTCTGTAAATGA+TGG + chr4.4:2193638-2193657 MS.gene049159:intron 25.0%
AAAAGATGGGAAATTCTCAT+GGG + chr4.4:2192841-2192860 MS.gene049159:CDS 30.0%
AATAAAAGTTGCAGTTGCAA+AGG - chr4.4:2192607-2192626 None:intergenic 30.0%
ATTGGAATTCCTTTGAATTC+TGG + chr4.4:2192624-2192643 MS.gene049159:intron 30.0%
CATTATGCAAGAAATCAACT+TGG - chr4.4:2193569-2193588 None:intergenic 30.0%
CTCAAGCAACAATATCTTTA+GGG + chr4.4:2192732-2192751 MS.gene049159:intron 30.0%
CTCTTATGTAATAGCTATGT+TGG + chr4.4:2192280-2192299 MS.gene049159:intron 30.0%
CTTCGATTATCAAGATACTT+CGG + chr4.4:2192664-2192683 MS.gene049159:intron 30.0%
GCAAAATCCAATAGAGAAAT+AGG - chr4.4:2193814-2193833 None:intergenic 30.0%
GTAAGAACAGTTACAACTAA+TGG - chr4.4:2192585-2192604 None:intergenic 30.0%
TAAAAGATGGGAAATTCTCA+TGG + chr4.4:2192840-2192859 MS.gene049159:CDS 30.0%
TCTCAAGCAACAATATCTTT+AGG + chr4.4:2192731-2192750 MS.gene049159:intron 30.0%
TGTGATTAAGTTTCAAGCTT+GGG + chr4.4:2192452-2192471 MS.gene049159:intron 30.0%
! AGCACTGAATATAATCATCA+AGG - chr4.4:2193326-2193345 None:intergenic 30.0%
! CAGTCAAATTGACTCTATAA+TGG + chr4.4:2193467-2193486 MS.gene049159:intron 30.0%
! TATAAGCTCTATCTTTTTGC+AGG + chr4.4:2193494-2193513 MS.gene049159:intron 30.0%
! TTTGCAACTGCAACTTTTAT+TGG + chr4.4:2192606-2192625 MS.gene049159:intron 30.0%
! TTTTTGCAGGAATGTATCAT+GGG + chr4.4:2193507-2193526 MS.gene049159:intron 30.0%
!! AGAGTACTGTTGCTATATAT+TGG - chr4.4:2193694-2193713 None:intergenic 30.0%
!! AGAGTTGGTAATTAAGAAAG+GGG + chr4.4:2192889-2192908 MS.gene049159:CDS 30.0%
!! GAAGAGTTGGTAATTAAGAA+AGG + chr4.4:2192887-2192906 MS.gene049159:CDS 30.0%
!! GCATAATGTTGACTCTATAA+TGG + chr4.4:2193581-2193600 MS.gene049159:CDS 30.0%
!! TCTATTAGTATTTTGAACCG+GGG + chr4.4:2193901-2193920 MS.gene049159:intron 30.0%
!!! AGCCAGCTACTATTTTTTAA+AGG + chr4.4:2193842-2193861 MS.gene049159:intron 30.0%
AAAACAGTGCCAGAATTCAA+AGG - chr4.4:2192636-2192655 None:intergenic 35.0%
AACAGTACTCTTCATGTAGT+AGG + chr4.4:2193703-2193722 MS.gene049159:intron 35.0%
AATGAACATGGACAAGTACA+GGG + chr4.4:2193194-2193213 MS.gene049159:CDS 35.0%
AATGTTCAAGATCTCAGGAA+AGG + chr4.4:2192979-2192998 MS.gene049159:CDS 35.0%
ATCGAAAGAAAAAGAAAGCG+GGG + chr4.4:2194132-2194151 MS.gene049159:CDS 35.0%
ATGAATGAACTTCTCAAAGC+AGG + chr4.4:2193996-2194015 MS.gene049159:intron 35.0%
CATCGAAAGAAAAAGAAAGC+GGG + chr4.4:2194131-2194150 MS.gene049159:CDS 35.0%
CATCTTGACACCAACTTTAA+AGG + chr4.4:2193936-2193955 MS.gene049159:intron 35.0%
CCATCGAAAGAAAAAGAAAG+CGG + chr4.4:2194130-2194149 MS.gene049159:CDS 35.0%
GCAGAAACAAGTGATAAAAC+TGG + chr4.4:2194068-2194087 MS.gene049159:intron 35.0%
GTGTGATTAAGTTTCAAGCT+TGG + chr4.4:2192451-2192470 MS.gene049159:intron 35.0%
TAGCTGTGGAGATAAAAGAT+GGG + chr4.4:2192828-2192847 MS.gene049159:CDS 35.0%
TTCAGGGAAGTCTTCATTAT+TGG + chr4.4:2192940-2192959 MS.gene049159:CDS 35.0%
! AACAATATCTTTAGGGAGGT+TGG + chr4.4:2192739-2192758 MS.gene049159:intron 35.0%
! AAGCAACAATATCTTTAGGG+AGG + chr4.4:2192735-2192754 MS.gene049159:intron 35.0%
! ACAATATCTTTAGGGAGGTT+GGG + chr4.4:2192740-2192759 MS.gene049159:intron 35.0%
! CGCTTTCTTTTTCTTTCGAT+GGG - chr4.4:2194132-2194151 None:intergenic 35.0%
! CTTTTTGCAGGAATGTATCA+TGG + chr4.4:2193506-2193525 MS.gene049159:intron 35.0%
! GCTTTCTTTTTCTTTCGATG+GGG - chr4.4:2194131-2194150 None:intergenic 35.0%
! GTTTGGTTTACCAATGAACA+TGG + chr4.4:2193182-2193201 MS.gene049159:CDS 35.0%
! TGTTTCTGCTATCTTCATTG+AGG - chr4.4:2194057-2194076 None:intergenic 35.0%
!! AAAATAGTAGCTGGCTTTAG+AGG - chr4.4:2193838-2193857 None:intergenic 35.0%
!! TCATTATTGGCTTCTGTGTT+GGG + chr4.4:2192953-2192972 MS.gene049159:CDS 35.0%
!! TTCATTATTGGCTTCTGTGT+TGG + chr4.4:2192952-2192971 MS.gene049159:CDS 35.0%
ACAGTTACAACTAATGGTGC+AGG - chr4.4:2192579-2192598 None:intergenic 40.0%
ACTAGCTAGAGCTGTATATC+AGG + chr4.4:2193284-2193303 MS.gene049159:intron 40.0%
AGATGTTAGTATAGCTACCC+CGG - chr4.4:2193921-2193940 None:intergenic 40.0%
ATTGTTCAGGTCAGAGTTTG+TGG + chr4.4:2193096-2193115 MS.gene049159:intron 40.0%
ATTTCCAATCCATCCATGCT+CGG - chr4.4:2192517-2192536 None:intergenic 40.0%
CAATGAACATGGACAAGTAC+AGG + chr4.4:2193193-2193212 MS.gene049159:CDS 40.0%
CTGTACTTGTCCATGTTCAT+TGG - chr4.4:2193195-2193214 None:intergenic 40.0%
GAAATCATGATAAGAGCCTG+AGG - chr4.4:2192713-2192732 None:intergenic 40.0%
GCAATGGCATCAACCATATA+GGG - chr4.4:2192242-2192261 None:intergenic 40.0%
GGAGAAATGTTCAAGATCTC+AGG + chr4.4:2192974-2192993 MS.gene049159:CDS 40.0%
GTAGCTGTGGAGATAAAAGA+TGG + chr4.4:2192827-2192846 MS.gene049159:CDS 40.0%
GTTCATGTCGAGTAAGGAAA+TGG + chr4.4:2192767-2192786 MS.gene049159:intron 40.0%
TCGAAAGAAAAAGAAAGCGG+GGG + chr4.4:2194133-2194152 MS.gene049159:CDS 40.0%
TGCAATGGCATCAACCATAT+AGG - chr4.4:2192243-2192262 None:intergenic 40.0%
! ACTTTAAAGGTGATGCGTGA+AGG + chr4.4:2193949-2193968 MS.gene049159:intron 40.0%
! CCGCTTTCTTTTTCTTTCGA+TGG - chr4.4:2194133-2194152 None:intergenic 40.0%
! CTTTAAAGGTGATGCGTGAA+GGG + chr4.4:2193950-2193969 MS.gene049159:intron 40.0%
! GAATTGTGATGATGTAGCTG+TGG + chr4.4:2192814-2192833 MS.gene049159:CDS 40.0%
!! CAAGCTTGGGAAGAGTATTT+CGG + chr4.4:2192465-2192484 MS.gene049159:intron 40.0%
!! TCACGCATCACCTTTAAAGT+TGG - chr4.4:2193949-2193968 None:intergenic 40.0%
!! TCTCAAAGCAGGTCTAGTTT+TGG + chr4.4:2194007-2194026 MS.gene049159:intron 40.0%
!! TTGTAGGAACTGTTGGTTCA+GGG + chr4.4:2192924-2192943 MS.gene049159:CDS 40.0%
!!! TGCTGCAGTTTTTTCAGACT+TGG - chr4.4:2194190-2194209 None:intergenic 40.0%
AAGACGAGGGAAAGAGAAAC+TGG + chr4.4:2194220-2194239 MS.gene049159:CDS 45.0%
AAGGGAGAGTAGTGCAAAGT+GGG + chr4.4:2193968-2193987 MS.gene049159:intron 45.0%
AATACCGCGCTCTACAATCT+CGG - chr4.4:2193234-2193253 None:intergenic 45.0%
AATGCCACAGCTACTTGCAA+TGG - chr4.4:2192258-2192277 None:intergenic 45.0%
AGCAAAGCTCATTGAAGACG+AGG + chr4.4:2194206-2194225 MS.gene049159:CDS 45.0%
ATGGACAAGTACAGGGAAGA+TGG + chr4.4:2193201-2193220 MS.gene049159:CDS 45.0%
CGAAAGAAAAAGAAAGCGGG+GGG + chr4.4:2194134-2194153 MS.gene049159:CDS 45.0%
GCAAAGCTCATTGAAGACGA+GGG + chr4.4:2194207-2194226 MS.gene049159:CDS 45.0%
TAGAGCGCGGTATTAACTCA+GGG + chr4.4:2193240-2193259 MS.gene049159:intron 45.0%
TCAGTACTTGCAGCATTGCT+TGG + chr4.4:2192307-2192326 MS.gene049159:intron 45.0%
TGATGCAGCTTCACCCTATA+TGG + chr4.4:2192226-2192245 MS.gene049159:CDS 45.0%
TTTGTGAATCCGAGCATGGA+TGG + chr4.4:2192505-2192524 MS.gene049159:intron 45.0%
! AGTGCTGTTGATGCTCAAAC+AGG + chr4.4:2193340-2193359 MS.gene049159:intron 45.0%
! CTAGTTGCACACGTTGTTTC+TGG - chr4.4:2193269-2193288 None:intergenic 45.0%
! GTGCTGTTGATGCTCAAACA+GGG + chr4.4:2193341-2193360 MS.gene049159:intron 45.0%
!! CAGTTTTGTGAATCCGAGCA+TGG + chr4.4:2192501-2192520 MS.gene049159:intron 45.0%
!! GTTGTAGGAACTGTTGGTTC+AGG + chr4.4:2192923-2192942 MS.gene049159:CDS 45.0%
!!! TCTAGTTTTGGTGCAGCTTC+TGG + chr4.4:2194019-2194038 MS.gene049159:intron 45.0%
AAGCCGCGATTTGAGGATGA+AGG + chr4.4:2192402-2192421 MS.gene049159:intron 50.0%
AGCCTGAGGAAAGTCCTCAA+AGG - chr4.4:2192699-2192718 None:intergenic 50.0%
CGTATGTGGCACAAACGTCA+TGG + chr4.4:2193127-2193146 MS.gene049159:CDS 50.0%
GAAGGGAGAGTAGTGCAAAG+TGG + chr4.4:2193967-2193986 MS.gene049159:intron 50.0%
GAATCCGAGCATGGATGGAT+TGG + chr4.4:2192510-2192529 MS.gene049159:intron 50.0%
GATGCCATTGCAAGTAGCTG+TGG + chr4.4:2192251-2192270 MS.gene049159:CDS 50.0%
GCTGCTGTTGTAGGAACTGT+TGG + chr4.4:2192917-2192936 MS.gene049159:CDS 50.0%
GGACGAGTTCATGTCGAGTA+AGG + chr4.4:2192761-2192780 MS.gene049159:intron 50.0%
GGTCAGAGTTTGTGGAACGA+CGG + chr4.4:2193104-2193123 MS.gene049159:intron 50.0%
GTAGAGCGCGGTATTAACTC+AGG + chr4.4:2193239-2193258 MS.gene049159:intron 50.0%
TCGCCTTCATCCTCAAATCG+CGG - chr4.4:2192408-2192427 None:intergenic 50.0%
TGATGACAAGCCGCGATTTG+AGG + chr4.4:2192395-2192414 MS.gene049159:intron 50.0%
! AGCCTTTGAGGACTTTCCTC+AGG + chr4.4:2192694-2192713 MS.gene049159:intron 50.0%
!! AGTTTTGGTGCAGCTTCTGG+AGG + chr4.4:2194022-2194041 MS.gene049159:intron 50.0%
!! CGCTCTGAGAGTTGAAGAGT+TGG + chr4.4:2192874-2192893 MS.gene049159:CDS 50.0%
AGCGCGGTATTAACTCAGGG+AGG + chr4.4:2193243-2193262 MS.gene049159:intron 55.0%
CAGACCGAGATTGTAGAGCG+CGG + chr4.4:2193227-2193246 MS.gene049159:intron 55.0%
GGGGATCATGCTGCTGTTGT+AGG + chr4.4:2192908-2192927 MS.gene049159:CDS 55.0%
TTCGGACTCGAGAGCCTTTG+AGG + chr4.4:2192682-2192701 MS.gene049159:intron 55.0%
TTGTGGAACGACGGCGTATG+TGG + chr4.4:2193113-2193132 MS.gene049159:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 2192192 2194254 2192192 ID=MS.gene049159
chr4.4 mRNA 2192192 2194254 2192192 ID=MS.gene049159.t1;Parent=MS.gene049159
chr4.4 exon 2192192 2192286 2192192 ID=MS.gene049159.t1.exon1;Parent=MS.gene049159.t1
chr4.4 CDS 2192192 2192286 2192192 ID=cds.MS.gene049159.t1;Parent=MS.gene049159.t1
chr4.4 exon 2192802 2193000 2192802 ID=MS.gene049159.t1.exon2;Parent=MS.gene049159.t1
chr4.4 CDS 2192802 2193000 2192802 ID=cds.MS.gene049159.t1;Parent=MS.gene049159.t1
chr4.4 exon 2193105 2193238 2193105 ID=MS.gene049159.t1.exon3;Parent=MS.gene049159.t1
chr4.4 CDS 2193105 2193238 2193105 ID=cds.MS.gene049159.t1;Parent=MS.gene049159.t1
chr4.4 exon 2193342 2193378 2193342 ID=MS.gene049159.t1.exon4;Parent=MS.gene049159.t1
chr4.4 CDS 2193342 2193378 2193342 ID=cds.MS.gene049159.t1;Parent=MS.gene049159.t1
chr4.4 exon 2193516 2193602 2193516 ID=MS.gene049159.t1.exon5;Parent=MS.gene049159.t1
chr4.4 CDS 2193516 2193602 2193516 ID=cds.MS.gene049159.t1;Parent=MS.gene049159.t1
chr4.4 exon 2194072 2194254 2194072 ID=MS.gene049159.t1.exon6;Parent=MS.gene049159.t1
chr4.4 CDS 2194072 2194254 2194072 ID=cds.MS.gene049159.t1;Parent=MS.gene049159.t1
Gene Sequence

>MS.gene049159

ATGGCTGTTGATGCTCAACAACTCTCAGATATGATGATGCAGCTTCACCCTATATGGTTGATGCCATTGCAAGTAGCTGTGGCATTGACTCTTATGTAATAGCTATGTTGGTGTATCAGTACTTGCAGCATTGCTTGGAACTAGCATAGTGTTTCTTTTCGCGCTATATCGAACGAAGAGTAGTAACAGATTTCAGTTTCAGATGATGACAAGCCGCGATTTGAGGATGAAGGCGACAAATGAGTGCTTAACAACATGCGTGTGATTAAGTTTCAAGCTTGGGAAGAGTATTTCGGTAACAAGATTAAACAGTTTTGTGAATCCGAGCATGGATGGATTGGAAATTCATGTACTATTTTGCTGTTAACTTTGGAGTTTTGTCTGCCTGCACCATTAGTTGTAACTGTTCTTACCTTTGCAACTGCAACTTTTATTGGAATTCCTTTGAATTCTGGCACTGTTTTCACGATAACTTCGATTATCAAGATACTTCGGACTCGAGAGCCTTTGAGGACTTTCCTCAGGCTCTTATCATGATTTCTCAAGCAACAATATCTTTAGGGAGGTTGGGACGAGTTCATGTCGAGTAAGGAAATGGATGAGAATGCAGTGCAACGAGAGAGAATTGTGATGATGTAGCTGTGGAGATAAAAGATGGGAAATTCTCATGGGATGATAACGACGCTCTGAGAGTTGAAGAGTTGGTAATTAAGAAAGGGGATCATGCTGCTGTTGTAGGAACTGTTGGTTCAGGGAAGTCTTCATTATTGGCTTCTGTGTTGGGAGAAATGTTCAAGATCTCAGGAAAGGTATATATGCTTGACTACACTTTTAAAATGCATTTAAAAATATTTTATTGATTTGTGATTCTGTGAATATTGTTCTATGAAAATTTACTTGAAAAATTGTTCAGGTCAGAGTTTGTGGAACGACGGCGTATGTGGCACAAACGTCATGGATTCAGAATGCAACCATCAAAGAAAACATATTGTTTGGTTTACCAATGAACATGGACAAGTACAGGGAAGATGGTGACAGACCGAGATTGTAGAGCGCGGTATTAACTCAGGGAGGCCAGAAACAACGTGTGCAACTAGCTAGAGCTGTATATCAGGACACTGACATCTATCTCCTTGATGATTATATTCAGTGCTGTTGATGCTCAAACAGGGTCATTTATTTTTAAAGTAAGAACAAAGCTAAAATCTCATAGTTTTTATGATATAACAAATTGATTTTCATTATAAATGAATTGTCAGTTTTAAATTTCTAATACAGTCAAATTGACTCTATAATGGTATGTATAAGCTCTATCTTTTTGCAGGAATGTATCATGGGAGCTCTGAAAGATAAGACAGTTTTACTTGTAACACACCAAGTTGATTTCTTGCATAATGTTGACTCTATAATGGTATGTATAAGCTCACAACAAGTACCTAAAATGTTTGAGTTTTTTCTGTAAATGATGGCTCAATTTCAATTTTTCCCAAGTTATCATACCAATATATAGCAACAGTACTCTTCATGTAGTAGGTCTTATTCAAATGTTATACTATGTATTCTGTCATGCGTTCACCAAAAAACAAATTGCATTATTTACTTACATGTACATAATTTTTCCTATTTCTCTATTGGATTTTGCTCCTCTAAAGCCAGCTACTATTTTTTAAAGGTAAAATAAAATATGTATTATGCGCACATACATAACATCTATTAGTATTTTGAACCGGGGTAGCTATACTAACATCTTGACACCAACTTTAAAGGTGATGCGTGAAGGGAGAGTAGTGCAAAGTGGGAAAGTATGAATGAACTTCTCAAAGCAGGTCTAGTTTTGGTGCAGCTTCTGGAGGCTCATGAATCCTCAATGAAGATAGCAGAAACAAGTGATAAAACTGGTTAATGATTCAGCTCAATCTCAAAAACTAGCTCGCATCCCCATCGAAAGAAAAAGAAAGCGGGGGGCGAAAAAGCAGTCTTCTTCTGAAGATCAATCCAAGTCTGAAAAAACTGCAGCAAAGCTCATTGAAGACGAGGGAAAGAGAAACTGGACAAGTGACCAT

Protein sequence

>MS.gene049159.t1

MAVDAQQLSDMMMQLHPIWLMPLQVAVALTLIATRENCDDVAVEIKDGKFSWDDNDALRVEELVIKKGDHAAVVGTVGSGKSSLLASVLGEMFKISGKVRVCGTTAYVAQTSWIQNATIKENILFGLPMNMDKYREDGDRPRFAVDAQTGSFIFKECIMGALKDKTVLLVTHQVDFLHNVDSIMKQVIKLVNDSAQSQKLARIPIERKRKRGAKKQSSSEDQSKSEKTAAKLIEDEGKRNWTSDH