AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80797

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80797.t1 MTR_5g082150 94.667 450 22 1 1 448 1 450 0.0 886
MS.gene80797.t1 MTR_3g070230 59.653 461 157 8 1 440 1 453 0.0 550
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80797.t1 AT2G40000 50.000 454 192 9 1 440 1 433 1.47e-162 466
MS.gene80797.t1 AT3G55840 50.125 401 171 4 49 438 43 425 7.04e-146 423

Find 93 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAAGGTGCCGGAGATTT+TGG 0.173938 5.3:-66473099 MS.gene80797:CDS
ACCTACTTGGTTTCCTAGTT+TGG 0.222761 5.3:-66472859 MS.gene80797:CDS
CTGAAACTGAAGAAGCAATT+AGG 0.260225 5.3:-66473230 MS.gene80797:CDS
TTCAGTTTCAGAAAATCTTC+TGG 0.260322 5.3:+66473242 None:intergenic
ATGGGCTCGTTGGCCCATTT+GGG 0.268174 5.3:+66473917 None:intergenic
GATGGGCTCGTTGGCCCATT+TGG 0.305808 5.3:+66473916 None:intergenic
TGTAATTACACGTTAGGTTT+AGG 0.307935 5.3:-66473560 MS.gene80797:CDS
CTGAAGAAGCAATTAGGTTT+AGG 0.312550 5.3:-66473224 MS.gene80797:CDS
ATAATGCGATGACGTGGATT+TGG 0.322553 5.3:+66473771 None:intergenic
TTATGGTTATAAACAAGTTT+TGG 0.323018 5.3:-66472940 MS.gene80797:CDS
TTCACGCGGTGGAACGAATC+TGG 0.323133 5.3:-66473307 MS.gene80797:CDS
TTCTGCCACGTGGCTAGTTT+TGG 0.328397 5.3:+66473638 None:intergenic
GTGGACCCTACGGGTGGGCC+AGG 0.333557 5.3:-66473068 MS.gene80797:CDS
CGTTTATTGACGTAAGGTCT+TGG 0.340089 5.3:+66473830 None:intergenic
GGGAAGTAGTGAGATGAATT+TGG 0.344879 5.3:-66472907 MS.gene80797:CDS
TCCCTCATCTCCAAACCTTT+TGG 0.344945 5.3:-66473955 MS.gene80797:CDS
TCTAATGAATGGATGAAATT+CGG 0.358442 5.3:+66473485 None:intergenic
TAATGCGATGACGTGGATTT+GGG 0.368580 5.3:+66473772 None:intergenic
CCAAGATGGTTGATTTAGAA+TGG 0.372552 5.3:-66474123 None:intergenic
TACGGGTGGGCCAGGGGTAA+TGG 0.383222 5.3:-66473060 MS.gene80797:CDS
TGGAAGAGGAAGATGGAAAG+TGG 0.383586 5.3:+66474045 None:intergenic
TTGATGAGTGCCAAAAGGTT+TGG 0.384259 5.3:+66473945 None:intergenic
ACTCATCAACTTTCCCCAAA+TGG 0.396937 5.3:-66473931 MS.gene80797:CDS
GTTCGCTATAGCTTCTGAAT+TGG 0.419188 5.3:+66473672 None:intergenic
GTGTCCATGACTCGAAAATC+TGG 0.432252 5.3:+66473405 None:intergenic
TATAGCTTCTGAATTGGTCT+TGG 0.433807 5.3:+66473678 None:intergenic
GTTTATTGACGTAAGGTCTT+GGG 0.442071 5.3:+66473831 None:intergenic
ATTGCTTCCTCCATTACCCC+TGG 0.447070 5.3:+66473050 None:intergenic
CTCATCAACTTTCCCCAAAT+GGG 0.448880 5.3:-66473930 MS.gene80797:CDS
ATGACGTGTAATTACACGTT+AGG 0.449414 5.3:-66473566 MS.gene80797:CDS
TGGACCCTACGGGTGGGCCA+GGG 0.454672 5.3:-66473067 MS.gene80797:CDS
TGAAGATTTACACATGATGA+TGG 0.454928 5.3:-66473267 MS.gene80797:CDS
ACGGTGTCGTTTCTAATGAA+TGG 0.465434 5.3:+66473474 None:intergenic
TCGTTTGGTGTAAGTGGAAG+AGG 0.468935 5.3:+66474031 None:intergenic
CATTTGTTGCAAGGGTTGCA+AGG 0.470363 5.3:-66472990 MS.gene80797:CDS
GAAGCTGTTGTGATGTCGTT+TGG 0.474203 5.3:+66474016 None:intergenic
ATTACCCCTGGCCCACCCGT+AGG 0.478536 5.3:+66473062 None:intergenic
GGGTGGGCCAGGGGTAATGG+AGG 0.481288 5.3:-66473057 MS.gene80797:CDS
AGGTTTGGAGATGAGGGAGG+TGG 0.482326 5.3:+66473960 None:intergenic
TGCCAAAAGGTTTGGAGATG+AGG 0.483847 5.3:+66473953 None:intergenic
ACGACACCGTTTGATCATAT+CGG 0.493809 5.3:-66473461 MS.gene80797:CDS
CGCATTATTCTGCGATGACG+AGG 0.504892 5.3:-66473756 MS.gene80797:CDS
GGACCCTACGGGTGGGCCAG+GGG 0.509519 5.3:-66473066 MS.gene80797:CDS
AGAAGGTTCATTTGTTGCAA+GGG 0.512320 5.3:-66472998 MS.gene80797:CDS
ATTTCAAGAGCGGTTAAAGC+GGG 0.519016 5.3:+66473887 None:intergenic
GTCTTAGCAGCATCCAAACT+AGG 0.522386 5.3:+66472846 None:intergenic
ACGTCGTCGTAACGGAGAAT+CGG 0.523292 5.3:+66473515 None:intergenic
GTGTAGAGAATTGAAGCAAA+AGG 0.523961 5.3:-66473114 MS.gene80797:CDS
CAGAACGATGAATGAAAAGA+AGG 0.525000 5.3:-66473198 MS.gene80797:CDS
GAGAAGGTTCATTTGTTGCA+AGG 0.525081 5.3:-66472999 MS.gene80797:CDS
GTGATGTCGTTTGGTGTAAG+TGG 0.526001 5.3:+66474025 None:intergenic
GGTAATGGAGGAAGCAATGA+AGG 0.527586 5.3:-66473045 MS.gene80797:CDS
TGAATTTGGAATGTTTGAGT+AGG 0.527672 5.3:-66472893 MS.gene80797:CDS
TTACCCCTGGCCCACCCGTA+GGG 0.530395 5.3:+66473063 None:intergenic
AGAGAAGAAAGAGTTTGAGA+AGG 0.531438 5.3:-66473015 MS.gene80797:CDS
AGGTCTTGGGTCGGATAAGA+CGG 0.534796 5.3:+66473844 None:intergenic
GGAAGAGGAAGATGGAAAGT+GGG 0.535833 5.3:+66474046 None:intergenic
GGAAGTTGAAGTGGACCCTA+CGG 0.538569 5.3:-66473078 MS.gene80797:CDS
CACTCACGTTTATTGACGTA+AGG 0.540759 5.3:+66473824 None:intergenic
GTGTAAGTGGAAGAGGAAGA+TGG 0.540820 5.3:+66474038 None:intergenic
AAAGTGGGTAAAGAGAGTTT+TGG 0.542871 5.3:+66474061 None:intergenic
TGGGCTCGTTGGCCCATTTG+GGG 0.546043 5.3:+66473918 None:intergenic
GTTTGCAAACGTCGTCGTAA+CGG 0.546622 5.3:+66473507 None:intergenic
ATTTGTTGCAAGGGTTGCAA+GGG 0.554218 5.3:-66472989 MS.gene80797:CDS
GAAGTTGAAGTGGACCCTAC+GGG 0.555764 5.3:-66473077 MS.gene80797:CDS
CGTCATCATTTCAGATTCCA+CGG 0.556208 5.3:+66473583 None:intergenic
ACTTCAACTTCCAAAATCTC+CGG 0.557128 5.3:+66473089 None:intergenic
GCCAAAAGGTTTGGAGATGA+GGG 0.560345 5.3:+66473954 None:intergenic
CGTGTAGAATTCTGTTCTCG+TGG 0.561606 5.3:+66473435 None:intergenic
GAAAGTTGATGAGTGCCAAA+AGG 0.563443 5.3:+66473940 None:intergenic
CGCAGAATAATGCGATGACG+TGG 0.575972 5.3:+66473765 None:intergenic
TGGTTTCCGATATGATCAAA+CGG 0.583400 5.3:+66473455 None:intergenic
TTAGGAGAACAGAATTTCAA+CGG 0.584561 5.3:-66473542 MS.gene80797:CDS
AAAGAAGGAAAATCACGAAA+CGG 0.584750 5.3:-66473183 MS.gene80797:CDS
AGAATTGAAGCAAAAGGTGC+CGG 0.586064 5.3:-66473108 MS.gene80797:CDS
GTGAGAATAGTAGAAATACT+TGG 0.586393 5.3:-66472797 MS.gene80797:CDS
ACGAAAAGTGATTTCAAGAG+CGG 0.620559 5.3:+66473877 None:intergenic
ATTGACGTAAGGTCTTGGGT+CGG 0.627450 5.3:+66473835 None:intergenic
GTTGAAGTGGACCCTACGGG+TGG 0.629034 5.3:-66473074 MS.gene80797:CDS
ACGAATCTGGAAGATTCTAA+CGG 0.632285 5.3:-66473294 MS.gene80797:CDS
TGTGTTACTAGAGCGCGTGA+AGG 0.649816 5.3:-66473372 MS.gene80797:CDS
GATTTCAAGAGCGGTTAAAG+CGG 0.651543 5.3:+66473886 None:intergenic
GTCATATGTTGTGCAAAGTG+TGG 0.659532 5.3:+66473991 None:intergenic
TTGAAGTGGACCCTACGGGT+GGG 0.669435 5.3:-66473073 MS.gene80797:CDS
GAACAAAACACTGATACATG+TGG 0.669666 5.3:-66473734 MS.gene80797:CDS
CTTACGTCAATAAACGTGAG+TGG 0.674988 5.3:-66473823 MS.gene80797:CDS
TCCAAACTAGGAAACCAAGT+AGG 0.688386 5.3:+66472858 None:intergenic
AAAAGGTTTGGAGATGAGGG+AGG 0.691740 5.3:+66473957 None:intergenic
AACGAGTGAAATTCACGCGG+TGG 0.694602 5.3:-66473318 MS.gene80797:CDS
GCGCTCTAGTAACACACGCG+CGG 0.703640 5.3:+66473379 None:intergenic
TGCTACCAAAACTAGCCACG+TGG 0.752071 5.3:-66473643 MS.gene80797:CDS
AGCAACGAGTGAAATTCACG+CGG 0.772385 5.3:-66473321 MS.gene80797:CDS
CATCATTTCAGATTCCACGG+TGG 0.789723 5.3:+66473586 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGGTTATAAACAAGTTT+TGG - chr5.3:66473972-66473991 MS.gene80797:CDS 20.0%
! TCTAATGAATGGATGAAATT+CGG + chr5.3:66473430-66473449 None:intergenic 25.0%
!! TCTTTTGAACGAAAACAAAA+CGG + chr5.3:66473757-66473776 None:intergenic 25.0%
!!! GAGATGAAGAGATTTTTTTA+TGG - chr5.3:66473955-66473974 MS.gene80797:CDS 25.0%
AAAGAAGGAAAATCACGAAA+CGG - chr5.3:66473729-66473748 MS.gene80797:CDS 30.0%
GTGAGAATAGTAGAAATACT+TGG - chr5.3:66474115-66474134 MS.gene80797:CDS 30.0%
TGAAGATTTACACATGATGA+TGG - chr5.3:66473645-66473664 MS.gene80797:CDS 30.0%
TGTAATTACACGTTAGGTTT+AGG - chr5.3:66473352-66473371 MS.gene80797:CDS 30.0%
TTAGGAGAACAGAATTTCAA+CGG - chr5.3:66473370-66473389 MS.gene80797:CDS 30.0%
TTCAGTTTCAGAAAATCTTC+TGG + chr5.3:66473673-66473692 None:intergenic 30.0%
! TGAATTTGGAATGTTTGAGT+AGG - chr5.3:66474019-66474038 MS.gene80797:CDS 30.0%
!! AAAGAGAGTTTTGGTGATTT+AGG + chr5.3:66472845-66472864 None:intergenic 30.0%
!! AAGAGAGTTTTGGTGATTTA+GGG + chr5.3:66472844-66472863 None:intergenic 30.0%
!! CTCGAATGTTTTGTTATCTA+TGG + chr5.3:66473569-66473588 None:intergenic 30.0%
!!! ACAAGTTTTGGTTGTTATGA+TGG - chr5.3:66473984-66474003 MS.gene80797:CDS 30.0%
!!! AGACTTTTCTAGGGTATTAT+TGG - chr5.3:66474085-66474104 MS.gene80797:CDS 30.0%
!!! CAAGTTTTGGTTGTTATGAT+GGG - chr5.3:66473985-66474004 MS.gene80797:CDS 30.0%
!!! GACTTTTCTAGGGTATTATT+GGG - chr5.3:66474086-66474105 MS.gene80797:CDS 30.0%
ACGAAAAGTGATTTCAAGAG+CGG + chr5.3:66473038-66473057 None:intergenic 35.0%
ACGAATCTGGAAGATTCTAA+CGG - chr5.3:66473618-66473637 MS.gene80797:CDS 35.0%
ACTTCAACTTCCAAAATCTC+CGG + chr5.3:66473826-66473845 None:intergenic 35.0%
AGAGAAGAAAGAGTTTGAGA+AGG - chr5.3:66473897-66473916 MS.gene80797:CDS 35.0%
ATGACGTGTAATTACACGTT+AGG - chr5.3:66473346-66473365 MS.gene80797:CDS 35.0%
CAGAACGATGAATGAAAAGA+AGG - chr5.3:66473714-66473733 MS.gene80797:CDS 35.0%
CTGAAACTGAAGAAGCAATT+AGG - chr5.3:66473682-66473701 MS.gene80797:CDS 35.0%
CTGAAGAAGCAATTAGGTTT+AGG - chr5.3:66473688-66473707 MS.gene80797:CDS 35.0%
GAACAAAACACTGATACATG+TGG - chr5.3:66473178-66473197 MS.gene80797:CDS 35.0%
GTGTAGAGAATTGAAGCAAA+AGG - chr5.3:66473798-66473817 MS.gene80797:CDS 35.0%
GTTTATTGACGTAAGGTCTT+GGG + chr5.3:66473084-66473103 None:intergenic 35.0%
TGGTTTCCGATATGATCAAA+CGG + chr5.3:66473460-66473479 None:intergenic 35.0%
! AAAGTGGGTAAAGAGAGTTT+TGG + chr5.3:66472854-66472873 None:intergenic 35.0%
! AGAAGGTTCATTTGTTGCAA+GGG - chr5.3:66473914-66473933 MS.gene80797:CDS 35.0%
! ATGCTGCTAAGACTTTTCTA+GGG - chr5.3:66474076-66474095 MS.gene80797:CDS 35.0%
! ATTTTGCTGAGCTCAAGTAT+CGG + chr5.3:66473211-66473230 None:intergenic 35.0%
! CTTCTTTTCATTCATCGTTC+TGG + chr5.3:66473716-66473735 None:intergenic 35.0%
! GGATTTTTCTTGAACCTACT+TGG - chr5.3:66474040-66474059 MS.gene80797:CDS 35.0%
! TATAGCTTCTGAATTGGTCT+TGG + chr5.3:66473237-66473256 None:intergenic 35.0%
!! AGAGAGTTTTGGTGATTTAG+GGG + chr5.3:66472843-66472862 None:intergenic 35.0%
!! GTTAAAGCGGGTTTTATGAT+GGG + chr5.3:66473016-66473035 None:intergenic 35.0%
ACCTACTTGGTTTCCTAGTT+TGG - chr5.3:66474053-66474072 MS.gene80797:CDS 40.0%
ACGACACCGTTTGATCATAT+CGG - chr5.3:66473451-66473470 MS.gene80797:CDS 40.0%
ACTCATCAACTTTCCCCAAA+TGG - chr5.3:66472981-66473000 MS.gene80797:CDS 40.0%
ATAATGCGATGACGTGGATT+TGG + chr5.3:66473144-66473163 None:intergenic 40.0%
ATTTCAAGAGCGGTTAAAGC+GGG + chr5.3:66473028-66473047 None:intergenic 40.0%
CACTCACGTTTATTGACGTA+AGG + chr5.3:66473091-66473110 None:intergenic 40.0%
CGTCATCATTTCAGATTCCA+CGG + chr5.3:66473332-66473351 None:intergenic 40.0%
CGTTTATTGACGTAAGGTCT+TGG + chr5.3:66473085-66473104 None:intergenic 40.0%
CTCATCAACTTTCCCCAAAT+GGG - chr5.3:66472982-66473001 MS.gene80797:CDS 40.0%
CTTACGTCAATAAACGTGAG+TGG - chr5.3:66473089-66473108 MS.gene80797:CDS 40.0%
GATTTCAAGAGCGGTTAAAG+CGG + chr5.3:66473029-66473048 None:intergenic 40.0%
GGGAAGTAGTGAGATGAATT+TGG - chr5.3:66474005-66474024 MS.gene80797:CDS 40.0%
GTCATATGTTGTGCAAAGTG+TGG + chr5.3:66472924-66472943 None:intergenic 40.0%
GTTCGCTATAGCTTCTGAAT+TGG + chr5.3:66473243-66473262 None:intergenic 40.0%
TAATGCGATGACGTGGATTT+GGG + chr5.3:66473143-66473162 None:intergenic 40.0%
TCCAAACTAGGAAACCAAGT+AGG + chr5.3:66474057-66474076 None:intergenic 40.0%
TTGATGAGTGCCAAAAGGTT+TGG + chr5.3:66472970-66472989 None:intergenic 40.0%
! AGAATTGAAGCAAAAGGTGC+CGG - chr5.3:66473804-66473823 MS.gene80797:CDS 40.0%
! ATTTGTTGCAAGGGTTGCAA+GGG - chr5.3:66473923-66473942 MS.gene80797:CDS 40.0%
! GAGAAGGTTCATTTGTTGCA+AGG - chr5.3:66473913-66473932 MS.gene80797:CDS 40.0%
! GATGCTGCTAAGACTTTTCT+AGG - chr5.3:66474075-66474094 MS.gene80797:CDS 40.0%
!! ACGGTGTCGTTTCTAATGAA+TGG + chr5.3:66473441-66473460 None:intergenic 40.0%
!! GAAAGTTGATGAGTGCCAAA+AGG + chr5.3:66472975-66472994 None:intergenic 40.0%
!! GGAGATTTTGGAAGTTGAAG+TGG - chr5.3:66473825-66473844 MS.gene80797:CDS 40.0%
!! GGTTAAAGCGGGTTTTATGA+TGG + chr5.3:66473017-66473036 None:intergenic 40.0%
!!! TTGTTTTGATTTCTGCCACG+TGG + chr5.3:66473287-66473306 None:intergenic 40.0%
AAAAGGTTTGGAGATGAGGG+AGG + chr5.3:66472958-66472977 None:intergenic 45.0%
AGCAACGAGTGAAATTCACG+CGG - chr5.3:66473591-66473610 MS.gene80797:CDS 45.0%
ATTGACGTAAGGTCTTGGGT+CGG + chr5.3:66473080-66473099 None:intergenic 45.0%
CATCATTTCAGATTCCACGG+TGG + chr5.3:66473329-66473348 None:intergenic 45.0%
CGTGTAGAATTCTGTTCTCG+TGG + chr5.3:66473480-66473499 None:intergenic 45.0%
GAAGCTGTTGTGATGTCGTT+TGG + chr5.3:66472899-66472918 None:intergenic 45.0%
GCCAAAAGGTTTGGAGATGA+GGG + chr5.3:66472961-66472980 None:intergenic 45.0%
GGAAGAGGAAGATGGAAAGT+GGG + chr5.3:66472869-66472888 None:intergenic 45.0%
GTCTTAGCAGCATCCAAACT+AGG + chr5.3:66474069-66474088 None:intergenic 45.0%
GTGTAAGTGGAAGAGGAAGA+TGG + chr5.3:66472877-66472896 None:intergenic 45.0%
GTGTCCATGACTCGAAAATC+TGG + chr5.3:66473510-66473529 None:intergenic 45.0%
GTTTGCAAACGTCGTCGTAA+CGG + chr5.3:66473408-66473427 None:intergenic 45.0%
TGCCAAAAGGTTTGGAGATG+AGG + chr5.3:66472962-66472981 None:intergenic 45.0%
TGGAAGAGGAAGATGGAAAG+TGG + chr5.3:66472870-66472889 None:intergenic 45.0%
! CATTTGTTGCAAGGGTTGCA+AGG - chr5.3:66473922-66473941 MS.gene80797:CDS 45.0%
! TCAGAGACTATTTTCCACCG+TGG - chr5.3:66473312-66473331 MS.gene80797:CDS 45.0%
! TCCCTCATCTCCAAACCTTT+TGG - chr5.3:66472957-66472976 MS.gene80797:CDS 45.0%
!! GGTAATGGAGGAAGCAATGA+AGG - chr5.3:66473867-66473886 MS.gene80797:CDS 45.0%
!! GTGATGTCGTTTGGTGTAAG+TGG + chr5.3:66472890-66472909 None:intergenic 45.0%
!! GTGGATTTGGGATTTTGCGA+GGG + chr5.3:66473131-66473150 None:intergenic 45.0%
!! TCGTTTGGTGTAAGTGGAAG+AGG + chr5.3:66472884-66472903 None:intergenic 45.0%
!!! CACACCAGATTTTCGAGTCA+TGG - chr5.3:66473503-66473522 MS.gene80797:CDS 45.0%
AACGAGTGAAATTCACGCGG+TGG - chr5.3:66473594-66473613 MS.gene80797:CDS 50.0%
AGGTCTTGGGTCGGATAAGA+CGG + chr5.3:66473071-66473090 None:intergenic 50.0%
ATTGCTTCCTCCATTACCCC+TGG + chr5.3:66473865-66473884 None:intergenic 50.0%
CGCAGAATAATGCGATGACG+TGG + chr5.3:66473150-66473169 None:intergenic 50.0%
CGCATTATTCTGCGATGACG+AGG - chr5.3:66473156-66473175 MS.gene80797:CDS 50.0%
GAAGTTGAAGTGGACCCTAC+GGG - chr5.3:66473835-66473854 MS.gene80797:CDS 50.0%
GGAAGTTGAAGTGGACCCTA+CGG - chr5.3:66473834-66473853 MS.gene80797:CDS 50.0%
TGCTACCAAAACTAGCCACG+TGG - chr5.3:66473269-66473288 MS.gene80797:CDS 50.0%
! ACGTCGTCGTAACGGAGAAT+CGG + chr5.3:66473400-66473419 None:intergenic 50.0%
! TGTGTTACTAGAGCGCGTGA+AGG - chr5.3:66473540-66473559 MS.gene80797:CDS 50.0%
!! CGTGGATTTGGGATTTTGCG+AGG + chr5.3:66473132-66473151 None:intergenic 50.0%
!!! GCAAAAGGTGCCGGAGATTT+TGG - chr5.3:66473813-66473832 MS.gene80797:CDS 50.0%
!!! GGGTTTTATGATGGGCTCGT+TGG + chr5.3:66473008-66473027 None:intergenic 50.0%
!!! TTCTGCCACGTGGCTAGTTT+TGG + chr5.3:66473277-66473296 None:intergenic 50.0%
AGGTTTGGAGATGAGGGAGG+TGG + chr5.3:66472955-66472974 None:intergenic 55.0%
ATGGGCTCGTTGGCCCATTT+GGG + chr5.3:66472998-66473017 None:intergenic 55.0%
TTCACGCGGTGGAACGAATC+TGG - chr5.3:66473605-66473624 MS.gene80797:CDS 55.0%
TTGAAGTGGACCCTACGGGT+GGG - chr5.3:66473839-66473858 MS.gene80797:CDS 55.0%
GCGCTCTAGTAACACACGCG+CGG + chr5.3:66473536-66473555 None:intergenic 60.0%
GTTGAAGTGGACCCTACGGG+TGG - chr5.3:66473838-66473857 MS.gene80797:CDS 60.0%
TGGGCTCGTTGGCCCATTTG+GGG + chr5.3:66472997-66473016 None:intergenic 60.0%
! GATGGGCTCGTTGGCCCATT+TGG + chr5.3:66472999-66473018 None:intergenic 60.0%
ATTACCCCTGGCCCACCCGT+AGG + chr5.3:66473853-66473872 None:intergenic 65.0%
TACGGGTGGGCCAGGGGTAA+TGG - chr5.3:66473852-66473871 MS.gene80797:CDS 65.0%
TTACCCCTGGCCCACCCGTA+GGG + chr5.3:66473852-66473871 None:intergenic 65.0%
TGGACCCTACGGGTGGGCCA+GGG - chr5.3:66473845-66473864 MS.gene80797:CDS 70.0%
! GGGTGGGCCAGGGGTAATGG+AGG - chr5.3:66473855-66473874 MS.gene80797:CDS 70.0%
GGACCCTACGGGTGGGCCAG+GGG - chr5.3:66473846-66473865 MS.gene80797:CDS 75.0%
GTGGACCCTACGGGTGGGCC+AGG - chr5.3:66473844-66473863 MS.gene80797:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 66472794 66474140 66472794 ID=MS.gene80797
chr5.3 mRNA 66472794 66474140 66472794 ID=MS.gene80797.t1;Parent=MS.gene80797
chr5.3 exon 66472794 66474140 66472794 ID=MS.gene80797.t1.exon1;Parent=MS.gene80797.t1
chr5.3 CDS 66472794 66474140 66472794 ID=cds.MS.gene80797.t1;Parent=MS.gene80797.t1
Gene Sequence

>MS.gene80797

ATGGTTGATTTAGAATGGAAATCAAAGATGCTAAACTCAAACATAGCCCCTAAATCACCAAAACTCTCTTTACCCACTTTCCATCTTCCTCTTCCACTTACACCAAACGACATCACAACAGCTTCATCCACACTTTGCACAACATATGACAACTATCTCCACCTCCCTCATCTCCAAACCTTTTGGCACTCATCAACTTTCCCCAAATGGGCCAACGAGCCCATCATAAAACCCGCTTTAACCGCTCTTGAAATCACTTTTCGTCTCATAACAACCGTCTTATCCGACCCAAGACCTTACGTCAATAAACGTGAGTGGACTCGACGTGTCGAGTCCCTCGCAAAATCCCAAATCCACGTCATCGCATTATTCTGCGATGACGAGGAACAAAACACTGATACATGTGGCAAAGCTCCGATACTTGAGCTCAGCAAAATATACCAAGACCAATTCAGAAGCTATAGCGAACAAAGCTTGCTACCAAAACTAGCCACGTGGCAGAAATCAAAACAAATAGCTCAGAGACTATTTTCCACCGTGGAATCTGAAATGATGACGTGTAATTACACGTTAGGTTTAGGAGAACAGAATTTCAACGGTAAACCGATTCTCCGTTACGACGACGTTTGCAAACCGAATTTCATCCATTCATTAGAAACGACACCGTTTGATCATATCGGAAACCACGAGAACAGAATTCTACACGCGACACACCAGATTTTCGAGTCATGGACACACGCCGCGCGTGTGTTACTAGAGCGCGTGAAGGATTCCATAGATAACAAAACATTCGAGAAAGCAACGAGTGAAATTCACGCGGTGGAACGAATCTGGAAGATTCTAACGGAAATTGAAGATTTACACATGATGATGGATCCAGAAGATTTTCTGAAACTGAAGAAGCAATTAGGTTTAGGAACCAGAACGATGAATGAAAAGAAGGAAAATCACGAAACGGTACCGTTTTGTTTTCGTTCAAAAGAGTTTGTTACAATAACAAAAATGTGTAGAGAATTGAAGCAAAAGGTGCCGGAGATTTTGGAAGTTGAAGTGGACCCTACGGGTGGGCCAGGGGTAATGGAGGAAGCAATGAAGGTTTATTCAGAGAAGAAAGAGTTTGAGAAGGTTCATTTGTTGCAAGGGTTGCAAGGGATTGAGATAGAGATGAAGAGATTTTTTTATGGTTATAAACAAGTTTTGGTTGTTATGATGGGAAGTAGTGAGATGAATTTGGAATGTTTGAGTAGGATTTTTCTTGAACCTACTTGGTTTCCTAGTTTGGATGCTGCTAAGACTTTTCTAGGGTATTATTGGGAAAATAGTGAGAATAGTAGAAATACTTGGTGA
Protein sequence

>MS.gene80797.t1

MVDLEWKSKMLNSNIAPKSPKLSLPTFHLPLPLTPNDITTASSTLCTTYDNYLHLPHLQTFWHSSTFPKWANEPIIKPALTALEITFRLITTVLSDPRPYVNKREWTRRVESLAKSQIHVIALFCDDEEQNTDTCGKAPILELSKIYQDQFRSYSEQSLLPKLATWQKSKQIAQRLFSTVESEMMTCNYTLGLGEQNFNGKPILRYDDVCKPNFIHSLETTPFDHIGNHENRILHATHQIFESWTHAARVLLERVKDSIDNKTFEKATSEIHAVERIWKILTEIEDLHMMMDPEDFLKLKKQLGLGTRTMNEKKENHETVPFCFRSKEFVTITKMCRELKQKVPEILEVEVDPTGGPGVMEEAMKVYSEKKEFEKVHLLQGLQGIEIEMKRFFYGYKQVLVVMMGSSEMNLECLSRIFLEPTWFPSLDAAKTFLGYYWENSENSRNTW