Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80848.t1 | XP_024642012.1 | 99.1 | 106 | 1 | 0 | 1 | 106 | 1 | 106 | 9.10E-57 | 229.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80848.t1 | Q94C12 | 78.3 | 106 | 23 | 0 | 1 | 106 | 1 | 106 | 4.3e-47 | 188.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80848.t1 | I3S9E3 | 99.1 | 106 | 1 | 0 | 1 | 106 | 1 | 106 | 6.5e-57 | 229.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058906 | MS.gene80848 | 0.812053 | 5.14E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80848.t1 | MTR_6g084520 | 100.000 | 97 | 0 | 0 | 1 | 97 | 1 | 97 | 1.91e-70 | 205 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80848.t1 | AT3G18410 | 78.302 | 106 | 23 | 0 | 1 | 106 | 1 | 106 | 4.87e-60 | 179 |
| MS.gene80848.t1 | AT3G18410 | 78.302 | 106 | 23 | 0 | 1 | 106 | 1 | 106 | 4.87e-60 | 179 |
| MS.gene80848.t1 | AT1G49140 | 75.962 | 104 | 25 | 0 | 1 | 104 | 1 | 104 | 7.18e-57 | 171 |
| MS.gene80848.t1 | AT1G49140 | 75.962 | 104 | 25 | 0 | 1 | 104 | 1 | 104 | 7.18e-57 | 171 |
Find 29 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCAACTGCCTCAACTTT+TGG | 0.240924 | 6.2:-82923314 | None:intergenic |
| AAAAGCTTCGTTGGTGTTAT+AGG | 0.264593 | 6.2:+82920251 | MS.gene80848:CDS |
| GGTCGTCACCCTTCTCTTCA+TGG | 0.343983 | 6.2:+82920361 | MS.gene80848:CDS |
| AGTCTACTAGAGGGATTGGT+TGG | 0.361455 | 6.2:+82920329 | MS.gene80848:CDS |
| CAAAGATCCAGTGGCGATGC+TGG | 0.412298 | 6.2:+82920165 | MS.gene80848:CDS |
| CGTTGGTGTTATAGGATTGA+AGG | 0.432641 | 6.2:+82920259 | MS.gene80848:CDS |
| GTCTACTAGAGGGATTGGTT+GGG | 0.443343 | 6.2:+82920330 | MS.gene80848:CDS |
| TTATCCACGGGGAAATCATT+CGG | 0.443943 | 6.2:-82923336 | None:intergenic |
| CTCATTTCCAGCATCGCCAC+TGG | 0.446593 | 6.2:-82920172 | None:intergenic |
| ATCGCCACTGGATCTTTGTA+TGG | 0.461896 | 6.2:-82920160 | None:intergenic |
| CTTGAGTCTACTAGAGGGAT+TGG | 0.477507 | 6.2:+82920325 | MS.gene80848:CDS |
| GGGAAGGAAGAAGGGGTATG+TGG | 0.484400 | 6.2:+82920096 | MS.gene80848:CDS |
| TCTACTAGAGGGATTGGTTG+GGG | 0.490687 | 6.2:+82920331 | MS.gene80848:CDS |
| CAGTGGCGATGCTGGAAATG+AGG | 0.508085 | 6.2:+82920173 | MS.gene80848:CDS |
| TTCGCCGGATCGAAATCATC+TGG | 0.511283 | 6.2:-82920136 | None:intergenic |
| GGATCTTTGTATGGATTCGC+CGG | 0.537785 | 6.2:-82920151 | None:intergenic |
| GTTGGTGTTATAGGATTGAA+GGG | 0.554470 | 6.2:+82920260 | MS.gene80848:CDS |
| AAACACAGACCATGAAGAGA+AGG | 0.559518 | 6.2:-82920370 | None:intergenic |
| TTATTCGTGAAAAGCTTCGT+TGG | 0.561335 | 6.2:+82920242 | MS.gene80848:CDS |
| AGTGGCGATGCTGGAAATGA+GGG | 0.574162 | 6.2:+82920174 | MS.gene80848:CDS |
| CCCACCAGATGATTTCGATC+CGG | 0.583849 | 6.2:+82920132 | MS.gene80848:CDS |
| CAGTATCTTGAGTCTACTAG+AGG | 0.595830 | 6.2:+82920319 | MS.gene80848:CDS |
| GCCGGATCGAAATCATCTGG+TGG | 0.604138 | 6.2:-82920133 | None:intergenic |
| CTACTAGAGGGATTGGTTGG+GGG | 0.604522 | 6.2:+82920332 | MS.gene80848:CDS |
| CCGGATCGAAATCATCTGGT+GGG | 0.615720 | 6.2:-82920132 | None:intergenic |
| AACACAGACCATGAAGAGAA+GGG | 0.638042 | 6.2:-82920369 | None:intergenic |
| TGAACCAGGACCAAAAGTTG+AGG | 0.649485 | 6.2:+82923304 | MS.gene80848:intron |
| AGTATCTTGAGTCTACTAGA+GGG | 0.663002 | 6.2:+82920320 | MS.gene80848:CDS |
| GAATCCATACAAAGATCCAG+TGG | 0.700973 | 6.2:+82920156 | MS.gene80848:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTAAAATTGTTTAATT+CGG | + | chr6.2:82922222-82922241 | MS.gene80848:intron | 10.0% |
| !!! | AACAATTTTAAAATGAAAAG+TGG | - | chr6.2:82922217-82922236 | None:intergenic | 15.0% |
| !!! | AGTTGTCATTTTTATTATAA+AGG | + | chr6.2:82922049-82922068 | MS.gene80848:intron | 15.0% |
| !!! | ATCAACTTTAATTTCAATTA+TGG | + | chr6.2:82922395-82922414 | MS.gene80848:intron | 15.0% |
| !!! | GTTTTTTTTTTTTTTTGTTG+TGG | + | chr6.2:82921300-82921319 | MS.gene80848:intron | 15.0% |
| !!! | TGATTTTTTCAAATTATTAC+CGG | + | chr6.2:82922671-82922690 | MS.gene80848:intron | 15.0% |
| !!! | TTCATGTTTTTGTTAATTAA+GGG | + | chr6.2:82920743-82920762 | MS.gene80848:intron | 15.0% |
| !!! | TTTCATGTTTTTGTTAATTA+AGG | + | chr6.2:82920742-82920761 | MS.gene80848:intron | 15.0% |
| !!! | TTTTATTGCTATTGATATTT+GGG | + | chr6.2:82923055-82923074 | MS.gene80848:intron | 15.0% |
| !! | AAACAAAACTCAAACTATAA+TGG | - | chr6.2:82923176-82923195 | None:intergenic | 20.0% |
| !! | AATAGCTTATAATGAATAAG+GGG | + | chr6.2:82921898-82921917 | MS.gene80848:intron | 20.0% |
| !! | CAATAGCTTATAATGAATAA+GGG | + | chr6.2:82921897-82921916 | MS.gene80848:intron | 20.0% |
| !! | TAATTTCAATTATGGAGTAA+CGG | + | chr6.2:82922403-82922422 | MS.gene80848:intron | 20.0% |
| !! | TCAAATAAACCAATTCAAAT+CGG | - | chr6.2:82921477-82921496 | None:intergenic | 20.0% |
| !! | TTGTTGTGAAATTATGAATT+GGG | + | chr6.2:82920431-82920450 | MS.gene80848:intron | 20.0% |
| !!! | ATCTCTCTTTTATTTTTTTG+GGG | + | chr6.2:82921259-82921278 | MS.gene80848:intron | 20.0% |
| !!! | CTTATTTTGTAAACTTGATT+CGG | + | chr6.2:82922301-82922320 | MS.gene80848:intron | 20.0% |
| !!! | CTTTTATTGCTATTGATATT+TGG | + | chr6.2:82923054-82923073 | MS.gene80848:intron | 20.0% |
| !!! | GATCTCTCTTTTATTTTTTT+GGG | + | chr6.2:82921258-82921277 | MS.gene80848:intron | 20.0% |
| !!! | GATTTTTATGTAGTATTGAA+GGG | + | chr6.2:82920479-82920498 | MS.gene80848:intron | 20.0% |
| !!! | TAGTTTGAGTTTTGTTTTTT+CGG | + | chr6.2:82923179-82923198 | MS.gene80848:intron | 20.0% |
| !!! | TATCTTATTGTGATGTTTTA+AGG | + | chr6.2:82922893-82922912 | MS.gene80848:intron | 20.0% |
| !!! | TGATCTCTCTTTTATTTTTT+TGG | + | chr6.2:82921257-82921276 | MS.gene80848:intron | 20.0% |
| !!! | TGATTTTTATGTAGTATTGA+AGG | + | chr6.2:82920478-82920497 | MS.gene80848:intron | 20.0% |
| !!! | TTCTCTTTTTGATGTATAAT+TGG | + | chr6.2:82920405-82920424 | MS.gene80848:intron | 20.0% |
| !!! | TTTGTTGTGAAATTATGAAT+TGG | + | chr6.2:82920430-82920449 | MS.gene80848:intron | 20.0% |
| ! | AAAGCAAAAAAGCTCAAATT+TGG | - | chr6.2:82922834-82922853 | None:intergenic | 25.0% |
| ! | ATACTATTTGAGAGAACTTA+TGG | - | chr6.2:82921173-82921192 | None:intergenic | 25.0% |
| ! | ATAGCTTATAATGAATAAGG+GGG | + | chr6.2:82921899-82921918 | MS.gene80848:intron | 25.0% |
| ! | CAATAGCAATAAAAGCTTAA+TGG | - | chr6.2:82923049-82923068 | None:intergenic | 25.0% |
| ! | GCAATAGCTTATAATGAATA+AGG | + | chr6.2:82921896-82921915 | MS.gene80848:intron | 25.0% |
| ! | GTGAAAACATATTATAGACA+GGG | - | chr6.2:82921780-82921799 | None:intergenic | 25.0% |
| ! | TAGACAAAAGTAAATTTAGC+TGG | + | chr6.2:82922513-82922532 | MS.gene80848:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | - | chr6.2:82922646-82922665 | None:intergenic | 25.0% |
| ! | TTGATAAAACTATCCAAACA+AGG | - | chr6.2:82920605-82920624 | None:intergenic | 25.0% |
| !! | AGATTTTTATGTAGTATGGA+AGG | + | chr6.2:82920718-82920737 | MS.gene80848:intron | 25.0% |
| !! | ATTATAAAGGATTTTCGTGT+TGG | + | chr6.2:82922062-82922081 | MS.gene80848:intron | 25.0% |
| !! | CTTCATTTTATCTTTTGTGA+TGG | + | chr6.2:82921588-82921607 | MS.gene80848:intron | 25.0% |
| !! | GTTGAGATTTTTATGTAGTA+TGG | + | chr6.2:82920714-82920733 | MS.gene80848:intron | 25.0% |
| !! | TTGTTAATTAAGGGTATGTT+TGG | + | chr6.2:82920752-82920771 | MS.gene80848:intron | 25.0% |
| !! | TTTGTTGTGAATTGTCAAAT+GGG | + | chr6.2:82920671-82920690 | MS.gene80848:intron | 25.0% |
| !! | TTTGTTGTGGATTGTTAAAT+GGG | + | chr6.2:82921313-82921332 | MS.gene80848:intron | 25.0% |
| !!! | AGTTTGAGTTTTGTTTTTTC+GGG | + | chr6.2:82923180-82923199 | MS.gene80848:intron | 25.0% |
| !!! | TGTTTGATTGGTTTTTTTTG+AGG | + | chr6.2:82921401-82921420 | MS.gene80848:intron | 25.0% |
| !!! | TTTTGTTGTGAATTGTCAAA+TGG | + | chr6.2:82920670-82920689 | MS.gene80848:intron | 25.0% |
| !!! | TTTTGTTGTGGATTGTTAAA+TGG | + | chr6.2:82921312-82921331 | MS.gene80848:intron | 25.0% |
| AACACATTGTTCGTGAAAAA+TGG | + | chr6.2:82920197-82920216 | MS.gene80848:CDS | 30.0% | |
| AACTAAACCAATACATTGCT+TGG | - | chr6.2:82920969-82920988 | None:intergenic | 30.0% | |
| AGCTCATGAAAATAGCTTAT+AGG | + | chr6.2:82921825-82921844 | MS.gene80848:intron | 30.0% | |
| AGTACAAAAACATGTGTTTG+TGG | - | chr6.2:82922545-82922564 | None:intergenic | 30.0% | |
| ATAGAGAGAATAGGGAAATA+AGG | - | chr6.2:82921802-82921821 | None:intergenic | 30.0% | |
| ATCAAGCATTTGTAGTGTAA+GGG | + | chr6.2:82920620-82920639 | MS.gene80848:intron | 30.0% | |
| CATAAGATATTATCACACAG+AGG | - | chr6.2:82923270-82923289 | None:intergenic | 30.0% | |
| GAGATGAATTAGTTAGTGAA+TGG | + | chr6.2:82923016-82923035 | MS.gene80848:intron | 30.0% | |
| GATTCATGTTCAATGTAGAA+AGG | + | chr6.2:82922581-82922600 | MS.gene80848:intron | 30.0% | |
| GGTGAAAACATATTATAGAC+AGG | - | chr6.2:82921781-82921800 | None:intergenic | 30.0% | |
| TATATGAGTGACAAGTAGTT+GGG | + | chr6.2:82920548-82920567 | MS.gene80848:intron | 30.0% | |
| TATCAAGCATTTGTAGTGTA+AGG | + | chr6.2:82920619-82920638 | MS.gene80848:intron | 30.0% | |
| TATCTATCCAAGCAATGTAT+TGG | + | chr6.2:82920959-82920978 | MS.gene80848:intron | 30.0% | |
| TTAGTTGTGAATTCTCAAGT+TGG | + | chr6.2:82922008-82922027 | MS.gene80848:intron | 30.0% | |
| TTATATGAGTGACAAGTAGT+TGG | + | chr6.2:82920547-82920566 | MS.gene80848:intron | 30.0% | |
| TTTCAAATTATTACCGGTGT+CGG | + | chr6.2:82922677-82922696 | MS.gene80848:intron | 30.0% | |
| ! | AATTAAGGGTATGTTTGGAT+TGG | + | chr6.2:82920757-82920776 | MS.gene80848:intron | 30.0% |
| ! | TGATTAAGGGTTTGTTTGAT+TGG | + | chr6.2:82921389-82921408 | MS.gene80848:intron | 30.0% |
| ! | TGCTTTTAGTCTCTCATTTA+TGG | + | chr6.2:82922855-82922874 | MS.gene80848:intron | 30.0% |
| ! | TTGTTGATTAAGTGCATGTT+TGG | + | chr6.2:82920512-82920531 | MS.gene80848:intron | 30.0% |
| !! | ACTTATGAACCGATTTGAAT+TGG | + | chr6.2:82921465-82921484 | MS.gene80848:intron | 30.0% |
| !! | GTGATGTTTTTATTTGTGGT+GGG | + | chr6.2:82922167-82922186 | MS.gene80848:intron | 30.0% |
| !! | TGGTGTGATGTTTTTATTTG+TGG | + | chr6.2:82922163-82922182 | MS.gene80848:intron | 30.0% |
| !! | TGTGATGTTTTTATTTGTGG+TGG | + | chr6.2:82922166-82922185 | MS.gene80848:intron | 30.0% |
| !! | TTTTAGGGATTAGCAAGTTA+GGG | + | chr6.2:82922744-82922763 | MS.gene80848:intron | 30.0% |
| !! | TTTTTAGGGATTAGCAAGTT+AGG | + | chr6.2:82922743-82922762 | MS.gene80848:intron | 30.0% |
| !!! | AGTCGACACATGATATTTTT+TGG | + | chr6.2:82921197-82921216 | MS.gene80848:intron | 30.0% |
| !!! | GTCGACACATGATATTTTTT+GGG | + | chr6.2:82921198-82921217 | MS.gene80848:intron | 30.0% |
| !!! | GTGTTGATTGGAATTGTTTT+TGG | + | chr6.2:82922091-82922110 | MS.gene80848:intron | 30.0% |
| !!! | TCGACACATGATATTTTTTG+GGG | + | chr6.2:82921199-82921218 | MS.gene80848:intron | 30.0% |
| !!! | TCTCTTTTTTGTTGACCTTT+GGG | + | chr6.2:82923244-82923263 | MS.gene80848:intron | 30.0% |
| !!! | TGAGTGGTTTTGTTGATTAA+GGG | + | chr6.2:82921376-82921395 | MS.gene80848:intron | 30.0% |
| !!! | TTCTCTTTTTTGTTGACCTT+TGG | + | chr6.2:82923243-82923262 | MS.gene80848:intron | 30.0% |
| !!! | TTGAGTGGTTTTGTTGATTA+AGG | + | chr6.2:82921375-82921394 | MS.gene80848:intron | 30.0% |
| !!! | TTGATTGGAATTGTTTTTGG+AGG | + | chr6.2:82922094-82922113 | MS.gene80848:intron | 30.0% |
| !!! | TTTGGTTTGTTGTTTTTGAG+TGG | + | chr6.2:82921360-82921379 | MS.gene80848:intron | 30.0% |
| AAAAACACAACTTAGCTGAG+AGG | - | chr6.2:82922970-82922989 | None:intergenic | 35.0% | |
| AAAACAGTGTTTGTCCAAAC+AGG | + | chr6.2:82921753-82921772 | MS.gene80848:intron | 35.0% | |
| AAACAGTGTTTGTCCAAACA+GGG | + | chr6.2:82921754-82921773 | MS.gene80848:intron | 35.0% | |
| AAAGAGAGATCAACAAACCA+TGG | - | chr6.2:82921249-82921268 | None:intergenic | 35.0% | |
| AGTATCTTGAGTCTACTAGA+GGG | + | chr6.2:82920320-82920339 | MS.gene80848:CDS | 35.0% | |
| AGTCAGTTGTTAAGTGTCTT+TGG | + | chr6.2:82921929-82921948 | MS.gene80848:intron | 35.0% | |
| CATCTCACAAGTGTTTATGT+CGG | - | chr6.2:82921509-82921528 | None:intergenic | 35.0% | |
| GAGCTATCATAGAGAGAATA+GGG | - | chr6.2:82921810-82921829 | None:intergenic | 35.0% | |
| GTCAGTTGTTAAGTGTCTTT+GGG | + | chr6.2:82921930-82921949 | MS.gene80848:intron | 35.0% | |
| TGAGCTATCATAGAGAGAAT+AGG | - | chr6.2:82921811-82921830 | None:intergenic | 35.0% | |
| TGTTAAGCGAATTGTGAAGT+GGG | + | chr6.2:82922121-82922140 | MS.gene80848:intron | 35.0% | |
| TTATTCGTGAAAAGCTTCGT+TGG | + | chr6.2:82920242-82920261 | MS.gene80848:CDS | 35.0% | |
| TTCTAGACATAGACCTTGTT+TGG | + | chr6.2:82920589-82920608 | MS.gene80848:intron | 35.0% | |
| TTGTGAATTGTCAAATGGGT+TGG | + | chr6.2:82920675-82920694 | MS.gene80848:intron | 35.0% | |
| TTTGGGAAGGGAAATTGAAA+TGG | + | chr6.2:82922805-82922824 | MS.gene80848:intron | 35.0% | |
| ! | GATTGTTAAATGGGTTTGTG+TGG | + | chr6.2:82921322-82921341 | MS.gene80848:intron | 35.0% |
| ! | TCGTGTTAATTTTCTGAACC+AGG | + | chr6.2:82923290-82923309 | MS.gene80848:intron | 35.0% |
| ! | TTCGGTATGCTGTTTGTAAA+AGG | + | chr6.2:82922240-82922259 | MS.gene80848:intron | 35.0% |
| !! | AAAAGCTTCGTTGGTGTTAT+AGG | + | chr6.2:82920251-82920270 | MS.gene80848:CDS | 35.0% |
| !! | GGGTGATTAAAAGTGTCTTT+GGG | + | chr6.2:82922187-82922206 | MS.gene80848:intron | 35.0% |
| !! | GTTGGTGTTATAGGATTGAA+GGG | + | chr6.2:82920260-82920279 | MS.gene80848:CDS | 35.0% |
| !! | GTTGTGTTTTTGTGTGTGTA+AGG | + | chr6.2:82922979-82922998 | MS.gene80848:intron | 35.0% |
| !! | TGGGTGATTAAAAGTGTCTT+TGG | + | chr6.2:82922186-82922205 | MS.gene80848:intron | 35.0% |
| !!! | AGGTTTTTAGCTATGAAGCA+TGG | + | chr6.2:82922601-82922620 | MS.gene80848:intron | 35.0% |
| AAACACAGACCATGAAGAGA+AGG | - | chr6.2:82920373-82920392 | None:intergenic | 40.0% | |
| AAACCTATGAAGCACGGATA+TGG | - | chr6.2:82922726-82922745 | None:intergenic | 40.0% | |
| AACACAGACCATGAAGAGAA+GGG | - | chr6.2:82920372-82920391 | None:intergenic | 40.0% | |
| AGTGTCTTTGGGTAGCTAAA+AGG | + | chr6.2:82921941-82921960 | MS.gene80848:intron | 40.0% | |
| ATTCTTTCGCCTGTGCTTAA+AGG | + | chr6.2:82922777-82922796 | MS.gene80848:intron | 40.0% | |
| CAGTATCTTGAGTCTACTAG+AGG | + | chr6.2:82920319-82920338 | MS.gene80848:CDS | 40.0% | |
| CCCTAAAAACCTATGAAGCA+CGG | - | chr6.2:82922732-82922751 | None:intergenic | 40.0% | |
| CGACATAAACACTTGTGAGA+TGG | + | chr6.2:82921507-82921526 | MS.gene80848:intron | 40.0% | |
| CTAAGCCAAACAGCATACAA+TGG | - | chr6.2:82921981-82922000 | None:intergenic | 40.0% | |
| CTGTTAAGCGAATTGTGAAG+TGG | + | chr6.2:82922120-82922139 | MS.gene80848:intron | 40.0% | |
| GAATCCATACAAAGATCCAG+TGG | + | chr6.2:82920156-82920175 | MS.gene80848:CDS | 40.0% | |
| GCATTCCATTGTATGCTGTT+TGG | + | chr6.2:82921973-82921992 | MS.gene80848:intron | 40.0% | |
| GCCAAGATGAAATTGAAGCA+AGG | + | chr6.2:82923123-82923142 | MS.gene80848:intron | 40.0% | |
| GCCTTGCTTCAATTTCATCT+TGG | - | chr6.2:82923127-82923146 | None:intergenic | 40.0% | |
| GGTGTTTGTAATTGCTCTCA+TGG | + | chr6.2:82922143-82922162 | MS.gene80848:intron | 40.0% | |
| GTTAAGCGAATTGTGAAGTG+GGG | + | chr6.2:82922122-82922141 | MS.gene80848:intron | 40.0% | |
| TTCTTTCGCCTGTGCTTAAA+GGG | + | chr6.2:82922778-82922797 | MS.gene80848:intron | 40.0% | |
| ! | CCGTGCTTCATAGGTTTTTA+GGG | + | chr6.2:82922729-82922748 | MS.gene80848:intron | 40.0% |
| ! | TCCGTGCTTCATAGGTTTTT+AGG | + | chr6.2:82922728-82922747 | MS.gene80848:intron | 40.0% |
| ! | TTGTGTGGTGTGAAAAGTGT+TGG | + | chr6.2:82921337-82921356 | MS.gene80848:intron | 40.0% |
| !! | CGTTGGTGTTATAGGATTGA+AGG | + | chr6.2:82920259-82920278 | MS.gene80848:CDS | 40.0% |
| !! | GGTAGCTAAAAGGTGTCTTT+GGG | + | chr6.2:82921951-82921970 | MS.gene80848:intron | 40.0% |
| !! | TGGATTGGTTGCAAGAACTT+GGG | + | chr6.2:82920772-82920791 | MS.gene80848:intron | 40.0% |
| !! | TGGTGTGAAAAGTGTTGGTT+TGG | + | chr6.2:82921342-82921361 | MS.gene80848:intron | 40.0% |
| !! | TGTGCTTAAAGGGTGTCTTT+GGG | + | chr6.2:82922788-82922807 | MS.gene80848:intron | 40.0% |
| !! | TTAAAGGGTGTCTTTGGGAA+GGG | + | chr6.2:82922793-82922812 | MS.gene80848:intron | 40.0% |
| !! | TTATCGACTTGCAAGCACTT+GGG | + | chr6.2:82920993-82921012 | MS.gene80848:intron | 40.0% |
| !! | TTGGATTGGTTGCAAGAACT+TGG | + | chr6.2:82920771-82920790 | MS.gene80848:intron | 40.0% |
| !! | TTTATCGACTTGCAAGCACT+TGG | + | chr6.2:82920992-82921011 | MS.gene80848:intron | 40.0% |
| AACACAACTTAGCTGAGAGG+AGG | - | chr6.2:82922967-82922986 | None:intergenic | 45.0% | |
| AGTCACTACTCTTCTCTCCA+TGG | + | chr6.2:82921229-82921248 | MS.gene80848:intron | 45.0% | |
| ATCGCCACTGGATCTTTGTA+TGG | - | chr6.2:82920163-82920182 | None:intergenic | 45.0% | |
| ATGAAGCACGGATATGGACA+CGG | - | chr6.2:82922720-82922739 | None:intergenic | 45.0% | |
| ATTATAGACAGGGCCCTGTT+TGG | - | chr6.2:82921770-82921789 | None:intergenic | 45.0% | |
| ATTATCACACAGAGGCCCAA+AGG | - | chr6.2:82923262-82923281 | None:intergenic | 45.0% | |
| CAAAGACACCCTTTAAGCAC+AGG | - | chr6.2:82922789-82922808 | None:intergenic | 45.0% | |
| CAAGTAGTTGGGAGAGCTTA+TGG | + | chr6.2:82920559-82920578 | MS.gene80848:intron | 45.0% | |
| CTTGAGTCTACTAGAGGGAT+TGG | + | chr6.2:82920325-82920344 | MS.gene80848:CDS | 45.0% | |
| GGATCTTTGTATGGATTCGC+CGG | - | chr6.2:82920154-82920173 | None:intergenic | 45.0% | |
| TGAACCAGGACCAAAAGTTG+AGG | + | chr6.2:82923304-82923323 | MS.gene80848:intron | 45.0% | |
| TGTCCATATCCGTGCTTCAT+AGG | + | chr6.2:82922720-82922739 | MS.gene80848:intron | 45.0% | |
| ! | AGTCTACTAGAGGGATTGGT+TGG | + | chr6.2:82920329-82920348 | MS.gene80848:CDS | 45.0% |
| ! | GACTCAACTGCCTCAACTTT+TGG | - | chr6.2:82923317-82923336 | None:intergenic | 45.0% |
| !! | CTGTGCTTAAAGGGTGTCTT+TGG | + | chr6.2:82922787-82922806 | MS.gene80848:intron | 45.0% |
| !! | CTTAAAGGGTGTCTTTGGGA+AGG | + | chr6.2:82922792-82922811 | MS.gene80848:intron | 45.0% |
| !! | GGGTAGCTAAAAGGTGTCTT+TGG | + | chr6.2:82921950-82921969 | MS.gene80848:intron | 45.0% |
| !! | GTCTACTAGAGGGATTGGTT+GGG | + | chr6.2:82920330-82920349 | MS.gene80848:CDS | 45.0% |
| !! | TCTACTAGAGGGATTGGTTG+GGG | + | chr6.2:82920331-82920350 | MS.gene80848:CDS | 45.0% |
| !! | TGTTGGTTCGCTGTGTTGAT+TGG | + | chr6.2:82922079-82922098 | MS.gene80848:intron | 45.0% |
| AGTGGCGATGCTGGAAATGA+GGG | + | chr6.2:82920174-82920193 | MS.gene80848:CDS | 50.0% | |
| CCCACCAGATGATTTCGATC+CGG | + | chr6.2:82920132-82920151 | MS.gene80848:CDS | 50.0% | |
| CCGGATCGAAATCATCTGGT+GGG | - | chr6.2:82920135-82920154 | None:intergenic | 50.0% | |
| TATGGACACGGACAACGACA+CGG | - | chr6.2:82922708-82922727 | None:intergenic | 50.0% | |
| TTCGCCGGATCGAAATCATC+TGG | - | chr6.2:82920139-82920158 | None:intergenic | 50.0% | |
| ! | ACTGCCTCAACTTTTGGTCC+TGG | - | chr6.2:82923311-82923330 | None:intergenic | 50.0% |
| !! | CTACTAGAGGGATTGGTTGG+GGG | + | chr6.2:82920332-82920351 | MS.gene80848:CDS | 50.0% |
| CAAAGATCCAGTGGCGATGC+TGG | + | chr6.2:82920165-82920184 | MS.gene80848:CDS | 55.0% | |
| CAGTGGCGATGCTGGAAATG+AGG | + | chr6.2:82920173-82920192 | MS.gene80848:CDS | 55.0% | |
| CTCATTTCCAGCATCGCCAC+TGG | - | chr6.2:82920175-82920194 | None:intergenic | 55.0% | |
| GCCGGATCGAAATCATCTGG+TGG | - | chr6.2:82920136-82920155 | None:intergenic | 55.0% | |
| GGTCGTCACCCTTCTCTTCA+TGG | + | chr6.2:82920361-82920380 | MS.gene80848:CDS | 55.0% | |
| ! | GGGAAGGAAGAAGGGGTATG+TGG | + | chr6.2:82920096-82920115 | MS.gene80848:CDS | 55.0% |
| !! | GGGATTGGTTGGGGGAAAGA+TGG | + | chr6.2:82920340-82920359 | MS.gene80848:CDS | 55.0% |
| CGACACGGACATGCCGACAC+CGG | - | chr6.2:82922693-82922712 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 82920094 | 82923343 | 82920094 | ID=MS.gene80848 |
| chr6.2 | mRNA | 82920094 | 82923343 | 82920094 | ID=MS.gene80848.t1;Parent=MS.gene80848 |
| chr6.2 | exon | 82920094 | 82920382 | 82920094 | ID=MS.gene80848.t1.exon1;Parent=MS.gene80848.t1 |
| chr6.2 | CDS | 82920094 | 82920382 | 82920094 | ID=cds.MS.gene80848.t1;Parent=MS.gene80848.t1 |
| chr6.2 | exon | 82923312 | 82923343 | 82923312 | ID=MS.gene80848.t1.exon2;Parent=MS.gene80848.t1 |
| chr6.2 | CDS | 82923312 | 82923343 | 82923312 | ID=cds.MS.gene80848.t1;Parent=MS.gene80848.t1 |
| Gene Sequence |
| Protein sequence |
