AlfalfaGEDB | MS.gene80967

M. sativa cultivar XinJiangDaYe / MS.gene80967

KEGG: K01602
GO: -
PFAM: PF00101.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80967.t1	XP_013447451.1	89.1	55	6	0	1	55	127	181	2.10E-20	107.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80967.t1	P00869	83.6	55	9	0	1	55	126	180	2.1e-21	102.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80967.t1	A0A072U6Q1	89.1	55	6	0	1	55	127	181	1.5e-20	107.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049173	MS.gene80967	0.805258	1.46E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80967.t1	MTR_7g007120	89.091	55	6	1	55	127	181	8.32e-33	110
MS.gene80967.t1	MTR_7g007120	87.273	55	7	1	55	127	181	3.39e-32	108
MS.gene80967.t1	MTR_7g007120	87.273	55	7	1	55	127	181	3.62e-32	108
MS.gene80967.t1	MTR_7g007200	87.273	55	7	1	55	127	181	3.74e-32	108
MS.gene80967.t1	MTR_7g007220	87.273	55	7	1	55	127	181	6.51e-32	108
MS.gene80967.t1	MTR_7g007230	85.455	55	8	1	55	127	181	1.16e-30	105
MS.gene80967.t1	MTR_6g018300	83.636	55	9	1	55	123	177	1.17e-30	105
MS.gene80967.t1	MTR_6g018310	83.636	55	9	1	55	126	180	2.82e-30	104
MS.gene80967.t1	MTR_7g007210	84.211	38	6	1	38	127	164	4.37e-19	75.9
MS.gene80967.t1	MTR_4g127870	44.231	52	29	1	52	116	167	9.51e-16	66.6

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80967.t1	AT1G67090	65.455	55	19	1	55	124	178	1.03e-23	87.4
MS.gene80967.t1	AT5G38420	65.455	55	19	1	55	124	178	3.28e-23	86.3
MS.gene80967.t1	AT5G38430	65.455	55	19	1	55	124	178	3.77e-23	85.9
MS.gene80967.t1	AT5G38430	65.455	55	19	1	55	124	178	3.77e-23	85.9
MS.gene80967.t1	AT5G38410	65.455	55	19	1	55	129	183	4.36e-23	85.9
MS.gene80967.t1	AT5G38410	65.455	55	19	1	55	124	178	4.68e-23	85.9
MS.gene80967.t1	AT5G38410	65.455	55	19	1	55	117	171	4.75e-23	85.5

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Find 11 sgRNAs with CRISPR-Local

Find 10 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCAAGCTCCTTCAACACTT+GGG	0.552649	7.3:+90808175	None:intergenic
ATGATACGGACAAAGGCATC+AGG	0.443113	7.3:+90808134	None:intergenic
ATGTGGAAGTTGCCTTTGTT+TGG	0.411503	7.3:-90808212	MS.gene80967:CDS
CATCAAGCTCCTTCAACACT+TGG	0.411643	7.3:+90808174	None:intergenic
CGTTGTCGTATCCGATGATA+CGG	0.556365	7.3:+90808120	None:intergenic
GATGCCTTTGTCCGTATCAT+CGG	0.516870	7.3:-90808131	MS.gene80967:CDS
GCATCAGTTGCTCCAAACAA+AGG	0.598394	7.3:+90808200	None:intergenic
GTATCCGATGATACGGACAA+AGG	0.728734	7.3:+90808127	None:intergenic
TCTCAAATTTAGTAGACTGC+AGG	0.515110	7.3:+90808059	None:intergenic
TGATACGGACAAAGGCATCA+GGG	0.651232	7.3:+90808135	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ATCAAGCTCCTTCAACACTT+GGG	+	chr7.3:90808107-90808126	None:intergenic	40.0%
	ATGTGGAAGTTGCCTTTGTT+TGG	-	chr7.3:90808067-90808086	MS.gene80967:CDS	40.0%
	CATCAAGCTCCTTCAACACT+TGG	+	chr7.3:90808108-90808127	None:intergenic	45.0%
	CGTTGTCGTATCCGATGATA+CGG	+	chr7.3:90808162-90808181	None:intergenic	45.0%
	GATGCCTTTGTCCGTATCAT+CGG	-	chr7.3:90808148-90808167	MS.gene80967:CDS	45.0%
	GCATCAGTTGCTCCAAACAA+AGG	+	chr7.3:90808082-90808101	None:intergenic	45.0%
	GTATCCGATGATACGGACAA+AGG	+	chr7.3:90808155-90808174	None:intergenic	45.0%
!!	ATGATACGGACAAAGGCATC+AGG	+	chr7.3:90808148-90808167	None:intergenic	45.0%
!!	TGATACGGACAAAGGCATCA+GGG	+	chr7.3:90808147-90808166	None:intergenic	45.0%
!!	TGATGCTTCCCAAGTGTTGA+AGG	-	chr7.3:90808096-90808115	MS.gene80967:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	90808067	90808234	90808067	ID=MS.gene80967
chr7.3	mRNA	90808067	90808234	90808067	ID=MS.gene80967.t1;Parent=MS.gene80967
chr7.3	exon	90808067	90808234	90808067	ID=MS.gene80967.t1.exon1;Parent=MS.gene80967.t1
chr7.3	CDS	90808067	90808234	90808067	ID=cds.MS.gene80967.t1;Parent=MS.gene80967.t1

Gene Sequence	>MS.gene80967 ATGTGGAAGTTGCCTTTGTTTGGAGCAACTGATGCTTCCCAAGTGTTGAAGGAGCTTGATGAAGCTATTGCTGCTTTCCCTGATGCCTTTGTCCGTATCATCGGATACGACAACGTTCGTCAAGTTCAATGCATCAGTTTCATTGCGCACACACCTGCAGTCTACTAA
Protein sequence	>MS.gene80967.t1 MWKLPLFGATDASQVLKELDEAIAAFPDAFVRIIGYDNVRQVQCISFIAHTPAVY