AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049173


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049173.t1 MTR_3g098500 94.037 218 13 0 189 406 5 222 4.67e-150 424
MS.gene049173.t1 MTR_3g098500 75.862 203 41 3 1 197 7 207 1.80e-108 318
MS.gene049173.t1 MTR_3g098490 92.746 193 14 0 1 193 1 193 1.69e-132 379
MS.gene049173.t1 MTR_3g098490 77.626 219 39 5 191 406 1 212 4.26e-117 340
MS.gene049173.t1 MTR_8g096110 67.553 188 58 2 1 186 1 187 1.71e-88 267
MS.gene049173.t1 MTR_8g096110 65.263 190 63 2 191 380 1 187 8.52e-82 250
MS.gene049173.t1 MTR_8g096080 68.421 190 55 3 1 186 1 189 3.81e-87 264
MS.gene049173.t1 MTR_8g096080 64.583 192 63 4 191 380 1 189 2.53e-80 246
MS.gene049173.t1 MTR_8g096100 62.766 188 67 3 1 186 1 187 3.49e-77 238
MS.gene049173.t1 MTR_8g096100 56.842 190 79 2 191 380 1 187 9.51e-71 222
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049173.t1 AT3G23760 64.171 187 59 3 7 187 7 191 9.51e-82 249
MS.gene049173.t1 AT3G23760 61.828 186 60 4 202 380 9 190 7.86e-77 236
MS.gene049173.t1 AT4G14100 59.296 199 76 3 4 199 2 198 6.01e-81 248
MS.gene049173.t1 AT4G14100 57.005 207 78 5 201 404 7 205 6.26e-76 234

Find 113 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACTGTTCGTGGGGATTT+TGG 0.157790 3.3:+81010010 MS.gene049173:CDS
CTTGATGATGCTACCTATTT+AGG 0.162321 3.3:+81007682 MS.gene049173:CDS
CGACAGCATTGAGTTGATTT+TGG 0.167038 3.3:-81009293 None:intergenic
AAGCGGATCCCTACAGAAAT+TGG 0.272446 3.3:+81007480 MS.gene049173:CDS
GCTCTTGTTCATAAACATTA+AGG 0.279361 3.3:-81009208 None:intergenic
ATAATTTCCTTTGTAATGTT+TGG 0.290309 3.3:+81009466 MS.gene049173:CDS
CTTGAGGGCGCTACGTATTT+AGG 0.303379 3.3:+81009429 MS.gene049173:CDS
TCCGGCCAAGCTGCCGGAAC+TGG 0.316253 3.3:-81007427 None:intergenic
AACTTGTTCTTGACCTAAAT+AGG 0.332003 3.3:-81007695 None:intergenic
ATAATTTCCTATGTAATGTT+TGG 0.333466 3.3:+81007719 MS.gene049173:CDS
TCCGGCCAAACAGCCGGAAT+TGG 0.340541 3.3:-81009174 None:intergenic
GTAGCGCCCTCAAGAAAATT+AGG 0.340967 3.3:-81009420 None:intergenic
CCCTACAGAAATTGGACTTA+TGG 0.343249 3.3:+81007488 MS.gene049173:CDS
TGCAATAGAACACACCTTTA+CGG 0.348173 3.3:+81007357 MS.gene049173:CDS
CAATATCATTGAGTTGATCT+TGG 0.360877 3.3:-81007546 None:intergenic
TTGTAGATTACGACCTTGAA+TGG 0.361181 3.3:+81007566 MS.gene049173:CDS
CTCGATGGCGGAGCCAGTTC+CGG 0.363777 3.3:+81007414 MS.gene049173:CDS
CTGAGCCAATTCCGGCTGTT+TGG 0.366949 3.3:+81009169 MS.gene049173:CDS
GTAGCATCATCAAGCCAATT+AGG 0.369633 3.3:-81007673 None:intergenic
TTGGTATTCTCCGTCCTAAT+TGG 0.369794 3.3:+81007659 MS.gene049173:CDS
TAATTTCCTATGTAATGTTT+GGG 0.374401 3.3:+81007720 MS.gene049173:CDS
TTCGATGGCTGAGCCAATTC+CGG 0.379483 3.3:+81009161 MS.gene049173:CDS
GTTAAGTGGTTCTTCTACTC+AGG 0.396357 3.3:+81009540 MS.gene049173:CDS
GAGAGAAGAGAATGACATAT+AGG 0.411659 3.3:-81009125 None:intergenic
GAGTAGAAGAACCACTTAAC+AGG 0.415932 3.3:-81009537 None:intergenic
GGAGAATACCTACAGGAAAC+TGG 0.417162 3.3:-81009395 None:intergenic
GCCAATTCCGGCTGTTTGGC+CGG 0.420441 3.3:+81009173 MS.gene049173:CDS
GCCAGTTCCGGCAGCTTGGC+CGG 0.421754 3.3:+81007426 MS.gene049173:CDS
CTGCAATAGAACAACTATCT+AGG 0.426683 3.3:+81009097 MS.gene049173:CDS
TGCTCATGTGATGGCATTTG+AGG 0.428221 3.3:+81009907 MS.gene049173:CDS
TCCTGCAGAAAGTGGACTTA+TGG 0.436493 3.3:+81009235 MS.gene049173:CDS
GTGTAGAAGATCCACTTAAC+AGG 0.439368 3.3:-81007790 None:intergenic
TGTCATTCTCTTCTCTCTCT+CGG 0.441820 3.3:+81009131 MS.gene049173:CDS
AACTGCTCCGGCCAAGCTGC+CGG 0.446630 3.3:-81007433 None:intergenic
ATGTTGAAGTTTCGACCGTT+GGG 0.451295 3.3:-81007520 None:intergenic
GTCTGATTGAAGCAGTATAC+AGG 0.464973 3.3:-81008239 None:intergenic
GTCTGATTGAAGCAGTATAT+AGG 0.470699 3.3:-81009965 None:intergenic
TGCAGTGGCGGTCGGAGGGA+TGG 0.474901 3.3:-81007618 None:intergenic
ATGTTGAAGTTTCGACCGTT+AGG 0.477068 3.3:-81009267 None:intergenic
AGGTTCCATTGGTCCATTCA+AGG 0.477181 3.3:-81007579 None:intergenic
AACTGCTCCGGCCAAACAGC+CGG 0.482218 3.3:-81009180 None:intergenic
CTTTCTCCCAAACATTACAT+AGG 0.489592 3.3:-81007726 None:intergenic
GATGTTGAAGTTTCGACCGT+TGG 0.491687 3.3:-81007521 None:intergenic
TTGTTCTATTGCAGAGGCCA+TGG 0.498883 3.3:-81009088 None:intergenic
CGGAGCCAGTTCCGGCAGCT+TGG 0.500739 3.3:+81007422 MS.gene049173:CDS
GCTTGAGGATCCGCATTGGC+AGG 0.511109 3.3:+81009940 MS.gene049173:CDS
AACCTTGCAGTGGCGGTCGG+AGG 0.511934 3.3:-81007623 None:intergenic
GAGTAGTACCGTTACCGTAA+AGG 0.512409 3.3:-81007371 None:intergenic
ACCTTGCAGTGGCGGTCGGA+GGG 0.512978 3.3:-81007622 None:intergenic
GGGATGGAGAGTGTAGATGA+AGG 0.516088 3.3:-81009349 None:intergenic
CATGTGATGGCATTTGAGGT+TGG 0.522316 3.3:+81009911 MS.gene049173:CDS
ACCATAAGTCCACTTTCTGC+AGG 0.523892 3.3:-81009236 None:intergenic
ATAGAATCCACTACTGTTCG+TGG 0.525170 3.3:+81010001 MS.gene049173:CDS
ACCATAAGTCCAATTTCTGT+AGG 0.527172 3.3:-81007489 None:intergenic
TCGTCGTTTACGACCTCGAA+TGG 0.528379 3.3:+81009313 MS.gene049173:CDS
TCACTCGAAGGCCTGTTAAG+TGG 0.539058 3.3:+81007779 MS.gene049173:CDS
GACAACCTTGCAGTGGCGGT+CGG 0.543354 3.3:-81007626 None:intergenic
TGCAATGGCTGTCTGAGGGA+TGG 0.545737 3.3:-81009365 None:intergenic
TTATGGTACGACTGGCCTAA+CGG 0.548138 3.3:+81009252 MS.gene049173:CDS
GAGCGGAGTCCTGCAGAAAG+TGG 0.548813 3.3:+81009227 MS.gene049173:CDS
TGCTCATGTGATGACATTTG+AGG 0.548966 3.3:+81008181 MS.gene049173:CDS
GTTAAGTGGATCTTCTACAC+AGG 0.549287 3.3:+81007793 MS.gene049173:CDS
GCTTGAGGATGTGCATTGGC+AGG 0.549400 3.3:+81008214 MS.gene049173:CDS
GACCTTGCAATGGCTGTCTG+AGG 0.550924 3.3:-81009370 None:intergenic
TCACTCGTAGACCTGTTAAG+TGG 0.552659 3.3:+81009526 MS.gene049173:CDS
TCCCTCCGACCGCCACTGCA+AGG 0.553601 3.3:+81007621 MS.gene049173:CDS
GTACATGAAGGAGGTTCCAT+TGG 0.555646 3.3:-81007590 None:intergenic
ATTAAGGCATGAAACTGCTC+CGG 0.562441 3.3:-81009192 None:intergenic
AGGTACCGTTGGTCCATTCG+AGG 0.563492 3.3:-81009326 None:intergenic
ATGGAGAGTGTAGATGAAGG+AGG 0.563676 3.3:-81009346 None:intergenic
TGAGGTTGGAGCAGTGCTTG+AGG 0.565540 3.3:+81009925 MS.gene049173:CDS
GCTTCTGTTCATGAATAGTA+CGG 0.566725 3.3:-81007461 None:intergenic
CCATAAGTCCAATTTCTGTA+GGG 0.573008 3.3:-81007488 None:intergenic
CATGGACAACCTTGCAGTGG+CGG 0.573319 3.3:-81007630 None:intergenic
AGTACGGAATGAAACTGCTC+CGG 0.575238 3.3:-81007445 None:intergenic
AAGTGGACTTATGGTACGAC+TGG 0.577314 3.3:+81009244 MS.gene049173:CDS
AATTGGACTTATGGTACGAC+TGG 0.582011 3.3:+81007497 MS.gene049173:CDS
AAAATCCCCACGAACAGTAG+TGG 0.582297 3.3:-81010008 None:intergenic
TAGAATCCACTACTGTTCGT+GGG 0.585043 3.3:+81010002 MS.gene049173:CDS
TCCCTCAGACAGCCATTGCA+AGG 0.589215 3.3:+81009368 MS.gene049173:CDS
ACCTTGCAATGGCTGTCTGA+GGG 0.591070 3.3:-81009369 None:intergenic
TTATGGTACGACTGGCCCAA+CGG 0.591091 3.3:+81007505 MS.gene049173:CDS
TCTCTCGGCTTCATATTCGA+TGG 0.592702 3.3:+81009146 MS.gene049173:CDS
AGAACACACCTTTACGGTAA+CGG 0.593520 3.3:+81007363 MS.gene049173:CDS
CATGTGATGACATTTGAGGT+TGG 0.595333 3.3:+81008185 MS.gene049173:CDS
AAGGTTGTCCATGTTGAAGT+TGG 0.595989 3.3:+81007640 MS.gene049173:CDS
CTTTCGTCCAAACATTACAA+AGG 0.600135 3.3:-81009473 None:intergenic
CGTTCTCTTCTCACTCTCGA+TGG 0.600466 3.3:+81007399 MS.gene049173:CDS
GATGAAACTTAGAGCAGCCA+TGG 0.603003 3.3:+81009071 MS.gene049173:intron
GTAGATGAAGGAGGTACCGT+TGG 0.604808 3.3:-81009337 None:intergenic
ATGAAGATGTTCTCACTCGA+AGG 0.605789 3.3:+81007767 MS.gene049173:CDS
CGCCCTCAAGAAAATTAGGA+CGG 0.606966 3.3:-81009416 None:intergenic
GAAACTGGACGACCTTGCAA+TGG 0.609877 3.3:-81009380 None:intergenic
TGAGGTTGGAGCAGTGCTTG+AGG 0.612681 3.3:+81008199 MS.gene049173:CDS
AAGGTCGTCCAGTTTCCTGT+AGG 0.614277 3.3:+81009387 MS.gene049173:CDS
AGATAGTTGTTCTATTGCAG+AGG 0.619269 3.3:-81009094 None:intergenic
TACGACCTTGAATGGACCAA+TGG 0.624357 3.3:+81007574 MS.gene049173:CDS
TACGACCTCGAATGGACCAA+CGG 0.625467 3.3:+81009321 MS.gene049173:CDS
CAGTGCTTGAGGATCCGCAT+TGG 0.625927 3.3:+81009936 MS.gene049173:CDS
AGGATATACTGCTCATGTGA+TGG 0.626399 3.3:+81009898 MS.gene049173:CDS
TCTCTTCTCACTCTCGATGG+CGG 0.627961 3.3:+81007402 MS.gene049173:CDS
AAAGGTGTGTTCTATTGCAG+AGG 0.630711 3.3:-81007353 None:intergenic
TTAGGACGGAGAATACCTAC+AGG 0.634745 3.3:-81009402 None:intergenic
GTACTATTCATGAACAGAAG+CGG 0.639978 3.3:+81007463 MS.gene049173:CDS
CATCATCAAGCCAATTAGGA+CGG 0.640457 3.3:-81007669 None:intergenic
GGGATGGAGAGTGTACATGA+AGG 0.647111 3.3:-81007602 None:intergenic
TTAATGTTTATGAACAAGAG+CGG 0.658259 3.3:+81009210 MS.gene049173:CDS
CAGTGCTTGAGGATGTGCAT+TGG 0.659088 3.3:+81008210 MS.gene049173:CDS
AGAATCCACTACTGTTCGTG+GGG 0.663660 3.3:+81010003 MS.gene049173:CDS
ATGGAGAGTGTACATGAAGG+AGG 0.663920 3.3:-81007599 None:intergenic
GGAGAATACCAACTTCAACA+TGG 0.664515 3.3:-81007648 None:intergenic
CAACATGGACAACCTTGCAG+TGG 0.677545 3.3:-81007633 None:intergenic
TATATAGGAGCCTGCCAATG+CGG 0.691036 3.3:-81009950 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATAAAAAAAAACTTGTT+TGG + chr3.3:81008937-81008956 MS.gene049173:intron 10.0%
!! AAAAAATTGGTAAATCAAAA+TGG + chr3.3:81008860-81008879 MS.gene049173:intron 15.0%
!! AAGAAAAATTGTTTCATATA+AGG - chr3.3:81009689-81009708 None:intergenic 15.0%
!! GAGATTAAATCTAAAAAAAT+TGG + chr3.3:81008847-81008866 MS.gene049173:intron 15.0%
!! TAATAATTAATAAGCTCAAT+CGG - chr3.3:81009775-81009794 None:intergenic 15.0%
!!! ATTTTTTTAGATTTAATCTC+TGG - chr3.3:81008847-81008866 None:intergenic 15.0%
!!! TTTTTTTAGATTTAATCTCT+GGG - chr3.3:81008846-81008865 None:intergenic 15.0%
!! ATAATTTCCTATGTAATGTT+TGG + chr3.3:81007719-81007738 MS.gene049173:CDS 20.0%
!! ATAATTTCCTTTGTAATGTT+TGG + chr3.3:81009466-81009485 MS.gene049173:CDS 20.0%
!! ATAGTGATAATTTGAATAGA+TGG + chr3.3:81009875-81009894 MS.gene049173:intron 20.0%
!! ATGATAAACTAATAAGTTCA+AGG - chr3.3:81008045-81008064 None:intergenic 20.0%
!! CTTATATGATAACAATTTGT+CGG + chr3.3:81007937-81007956 MS.gene049173:intron 20.0%
!! GGAAAATTGATGTTAATATT+TGG - chr3.3:81008427-81008446 None:intergenic 20.0%
!! TAATTTCCTATGTAATGTTT+GGG + chr3.3:81007720-81007739 MS.gene049173:CDS 20.0%
!! TGATAAACTAATAAGTTCAA+GGG - chr3.3:81008044-81008063 None:intergenic 20.0%
!!! AAACAAAAAACAAGTCATTT+TGG - chr3.3:81009022-81009041 None:intergenic 20.0%
!!! CAAAATTTGATTTATGAGTT+TGG - chr3.3:81008489-81008508 None:intergenic 20.0%
! ACTTGTTTGGAAGAATTAAA+TGG + chr3.3:81008950-81008969 MS.gene049173:intron 25.0%
! ATGACAAGATAAGCTTAAAT+AGG - chr3.3:81009616-81009635 None:intergenic 25.0%
! ATTCACTTCATTCAATATCT+TGG - chr3.3:81009807-81009826 None:intergenic 25.0%
! TCTCTTATATTATCACTCTT+GGG + chr3.3:81009575-81009594 MS.gene049173:intron 25.0%
! TGAATTAAGGTTTGATATAC+TGG + chr3.3:81008139-81008158 MS.gene049173:intron 25.0%
! TTAATGTTTATGAACAAGAG+CGG + chr3.3:81009210-81009229 MS.gene049173:CDS 25.0%
!! CTTATCTTGTCATACATTTT+GGG + chr3.3:81009623-81009642 MS.gene049173:intron 25.0%
!!! TTTGGATTCATTGACTTATT+TGG + chr3.3:81007857-81007876 MS.gene049173:intron 25.0%
AATAAGAGAAACACTCAAAG+TGG - chr3.3:81009045-81009064 None:intergenic 30.0%
AATGAATCCAAACAGTAACT+AGG - chr3.3:81007849-81007868 None:intergenic 30.0%
ATAAGAGTTTGATGAATGTG+AGG - chr3.3:81008984-81009003 None:intergenic 30.0%
CAAACCTTAATTCATTTCAC+AGG - chr3.3:81008133-81008152 None:intergenic 30.0%
CAATCATTCGGAAATACATT+AGG - chr3.3:81008394-81008413 None:intergenic 30.0%
CATTCCTGTGAAATGAATTA+AGG + chr3.3:81008126-81008145 MS.gene049173:intron 30.0%
CTATCTAAAAACAGTCTCTT+AGG - chr3.3:81008789-81008808 None:intergenic 30.0%
CTCTCTTATATTATCACTCT+TGG + chr3.3:81009574-81009593 MS.gene049173:intron 30.0%
GATATACTGGTAATTAATGC+AGG + chr3.3:81008152-81008171 MS.gene049173:intron 30.0%
GCTCTTGTTCATAAACATTA+AGG - chr3.3:81009211-81009230 None:intergenic 30.0%
GGCTAAACTAAACAATCATT+CGG - chr3.3:81008406-81008425 None:intergenic 30.0%
GTGATAATTTGAATAGATGG+AGG + chr3.3:81009878-81009897 MS.gene049173:intron 30.0%
TGGGAAATAATGAACTGAAT+TGG + chr3.3:81008532-81008551 MS.gene049173:intron 30.0%
TTAGGTACTAATAAGCGAAT+TGG - chr3.3:81008771-81008790 None:intergenic 30.0%
! AACAGAGCGTATTAATTTTC+GGG - chr3.3:81008700-81008719 None:intergenic 30.0%
! AACTTGTTCTTGACCTAAAT+AGG - chr3.3:81007698-81007717 None:intergenic 30.0%
! ATTTTCCATCATCATCTTGT+AGG + chr3.3:81008440-81008459 MS.gene049173:intron 30.0%
! CAACAGAGCGTATTAATTTT+CGG - chr3.3:81008701-81008720 None:intergenic 30.0%
! GCTTATCTTGTCATACATTT+TGG + chr3.3:81009622-81009641 MS.gene049173:intron 30.0%
! GTGATAAACAAGACAGATTT+TGG + chr3.3:81008569-81008588 MS.gene049173:intron 30.0%
! TTTTCCATCATCATCTTGTA+GGG + chr3.3:81008441-81008460 MS.gene049173:intron 30.0%
!! CAATATCATTGAGTTGATCT+TGG - chr3.3:81007549-81007568 None:intergenic 30.0%
!! CTCAGCTATCTTTTACTTTT+GGG + chr3.3:81008513-81008532 MS.gene049173:intron 30.0%
!!! ACTGTTTTTAGATAGGTAGA+GGG + chr3.3:81008794-81008813 MS.gene049173:intron 30.0%
!!! CTAAGAGACTGTTTTTAGAT+AGG + chr3.3:81008787-81008806 MS.gene049173:intron 30.0%
AATTAATACGCTCTGTTGTG+TGG + chr3.3:81008703-81008722 MS.gene049173:intron 35.0%
ACCATAAGTCCAATTTCTGT+AGG - chr3.3:81007492-81007511 None:intergenic 35.0%
AGATAGTTGTTCTATTGCAG+AGG - chr3.3:81009097-81009116 None:intergenic 35.0%
CCATAAGTCCAATTTCTGTA+GGG - chr3.3:81007491-81007510 None:intergenic 35.0%
CTGCAATAGAACAACTATCT+AGG + chr3.3:81009097-81009116 MS.gene049173:CDS 35.0%
CTTTCGTCCAAACATTACAA+AGG - chr3.3:81009476-81009495 None:intergenic 35.0%
CTTTCTCCCAAACATTACAT+AGG - chr3.3:81007729-81007748 None:intergenic 35.0%
GAGAGAAGAGAATGACATAT+AGG - chr3.3:81009128-81009147 None:intergenic 35.0%
GCTTCTGTTCATGAATAGTA+CGG - chr3.3:81007464-81007483 None:intergenic 35.0%
GTACTATTCATGAACAGAAG+CGG + chr3.3:81007463-81007482 MS.gene049173:CDS 35.0%
GTCTGATTGAAGCAGTATAT+AGG - chr3.3:81009968-81009987 None:intergenic 35.0%
TATCACTCCTAGTTACTGTT+TGG + chr3.3:81007839-81007858 MS.gene049173:intron 35.0%
TATCACTCTTGGGCTATATT+TGG + chr3.3:81009585-81009604 MS.gene049173:intron 35.0%
TGCAATAGAACACACCTTTA+CGG + chr3.3:81007357-81007376 MS.gene049173:CDS 35.0%
TTGTAGATTACGACCTTGAA+TGG + chr3.3:81007566-81007585 MS.gene049173:CDS 35.0%
! GCTCAGCTATCTTTTACTTT+TGG + chr3.3:81008512-81008531 MS.gene049173:intron 35.0%
!! CTTGATGATGCTACCTATTT+AGG + chr3.3:81007682-81007701 MS.gene049173:CDS 35.0%
!! TCTTTTGGAAGTTTGATGAG+AGG + chr3.3:81008299-81008318 MS.gene049173:intron 35.0%
!!! GACTGTTTTTAGATAGGTAG+AGG + chr3.3:81008793-81008812 MS.gene049173:intron 35.0%
AAGGTTGTCCATGTTGAAGT+TGG + chr3.3:81007640-81007659 MS.gene049173:CDS 40.0%
AATTGGACTTATGGTACGAC+TGG + chr3.3:81007497-81007516 MS.gene049173:CDS 40.0%
AGAACACACCTTTACGGTAA+CGG + chr3.3:81007363-81007382 MS.gene049173:CDS 40.0%
AGAGTTTGATGAATGTGAGG+TGG - chr3.3:81008981-81009000 None:intergenic 40.0%
AGGATATACTGCTCATGTGA+TGG + chr3.3:81009898-81009917 MS.gene049173:CDS 40.0%
ATAGAATCCACTACTGTTCG+TGG + chr3.3:81010001-81010020 MS.gene049173:CDS 40.0%
ATGAAGATGTTCTCACTCGA+AGG + chr3.3:81007767-81007786 MS.gene049173:CDS 40.0%
ATGTTGAAGTTTCGACCGTT+AGG - chr3.3:81007523-81007542 None:intergenic 40.0%
ATGTTGAAGTTTCGACCGTT+GGG - chr3.3:81007523-81007542 None:intergenic 40.0%
ATTAAGGCATGAAACTGCTC+CGG - chr3.3:81009195-81009214 None:intergenic 40.0%
CATCATCAAGCCAATTAGGA+CGG - chr3.3:81007672-81007691 None:intergenic 40.0%
CCCTACAGAAATTGGACTTA+TGG + chr3.3:81007488-81007507 MS.gene049173:CDS 40.0%
GAGTAGAAGAACCACTTAAC+AGG - chr3.3:81009540-81009559 None:intergenic 40.0%
GGAGAATACCAACTTCAACA+TGG - chr3.3:81007651-81007670 None:intergenic 40.0%
GTAGCATCATCAAGCCAATT+AGG - chr3.3:81007676-81007695 None:intergenic 40.0%
GTCTGATTGAAGCAGTATAC+AGG - chr3.3:81008242-81008261 None:intergenic 40.0%
GTGTAGAAGATCCACTTAAC+AGG - chr3.3:81007793-81007812 None:intergenic 40.0%
GTTAAGTGGATCTTCTACAC+AGG + chr3.3:81007793-81007812 MS.gene049173:CDS 40.0%
GTTAAGTGGTTCTTCTACTC+AGG + chr3.3:81009540-81009559 MS.gene049173:CDS 40.0%
TAGAATCCACTACTGTTCGT+GGG + chr3.3:81010002-81010021 MS.gene049173:CDS 40.0%
TGCTCATGTGATGACATTTG+AGG + chr3.3:81008181-81008200 MS.gene049173:CDS 40.0%
TGTCATTCTCTTCTCTCTCT+CGG + chr3.3:81009131-81009150 MS.gene049173:CDS 40.0%
TTAGAATCTGCTACTGTTCG+TGG + chr3.3:81008272-81008291 MS.gene049173:intron 40.0%
TTGGTATTCTCCGTCCTAAT+TGG + chr3.3:81007659-81007678 MS.gene049173:CDS 40.0%
TTGTAGGGATGGATGCAATA+TGG + chr3.3:81008456-81008475 MS.gene049173:intron 40.0%
! AAAGGTGTGTTCTATTGCAG+AGG - chr3.3:81007356-81007375 None:intergenic 40.0%
! CATGTGATGACATTTGAGGT+TGG + chr3.3:81008185-81008204 MS.gene049173:CDS 40.0%
! CTCCGTCCTAATTTTCTTGA+GGG + chr3.3:81009414-81009433 MS.gene049173:CDS 40.0%
! TCTCCGTCCTAATTTTCTTG+AGG + chr3.3:81009413-81009432 MS.gene049173:CDS 40.0%
!! GATTTTGGGAGTTTGATGAG+AGG + chr3.3:81010025-81010044 MS.gene049173:CDS 40.0%
!!! CGACAGCATTGAGTTGATTT+TGG - chr3.3:81009296-81009315 None:intergenic 40.0%
AAAATCCCCACGAACAGTAG+TGG - chr3.3:81010011-81010030 None:intergenic 45.0%
AAGCGGATCCCTACAGAAAT+TGG + chr3.3:81007480-81007499 MS.gene049173:CDS 45.0%
ACCATAAGTCCACTTTCTGC+AGG - chr3.3:81009239-81009258 None:intergenic 45.0%
AGAATCCACTACTGTTCGTG+GGG + chr3.3:81010003-81010022 MS.gene049173:CDS 45.0%
AGGTTCCATTGGTCCATTCA+AGG - chr3.3:81007582-81007601 None:intergenic 45.0%
AGTACGGAATGAAACTGCTC+CGG - chr3.3:81007448-81007467 None:intergenic 45.0%
CCATCATCATCTTGTAGGGA+TGG + chr3.3:81008445-81008464 MS.gene049173:intron 45.0%
CCATCCCTACAAGATGATGA+TGG - chr3.3:81008448-81008467 None:intergenic 45.0%
CGCCCTCAAGAAAATTAGGA+CGG - chr3.3:81009419-81009438 None:intergenic 45.0%
GAGTAGTACCGTTACCGTAA+AGG - chr3.3:81007374-81007393 None:intergenic 45.0%
GATGAAACTTAGAGCAGCCA+TGG + chr3.3:81009071-81009090 MS.gene049173:intron 45.0%
GATGTTGAAGTTTCGACCGT+TGG - chr3.3:81007524-81007543 None:intergenic 45.0%
GGAGAATACCTACAGGAAAC+TGG - chr3.3:81009398-81009417 None:intergenic 45.0%
GTACATGAAGGAGGTTCCAT+TGG - chr3.3:81007593-81007612 None:intergenic 45.0%
GTAGCGCCCTCAAGAAAATT+AGG - chr3.3:81009423-81009442 None:intergenic 45.0%
GTGGTTCTTCTACTCAGGTT+TGG + chr3.3:81009545-81009564 MS.gene049173:intron 45.0%
TACGACCTTGAATGGACCAA+TGG + chr3.3:81007574-81007593 MS.gene049173:CDS 45.0%
TATATAGGAGCCTGCCAATG+CGG - chr3.3:81009953-81009972 None:intergenic 45.0%
TCACTCGTAGACCTGTTAAG+TGG + chr3.3:81009526-81009545 MS.gene049173:CDS 45.0%
TCTCTCGGCTTCATATTCGA+TGG + chr3.3:81009146-81009165 MS.gene049173:CDS 45.0%
TGCTCATGTGATGGCATTTG+AGG + chr3.3:81009907-81009926 MS.gene049173:CDS 45.0%
TTAGGACGGAGAATACCTAC+AGG - chr3.3:81009405-81009424 None:intergenic 45.0%
TTGTTCTATTGCAGAGGCCA+TGG - chr3.3:81009091-81009110 None:intergenic 45.0%
! AAGTGGACTTATGGTACGAC+TGG + chr3.3:81009244-81009263 MS.gene049173:CDS 45.0%
! ACTACTGTTCGTGGGGATTT+TGG + chr3.3:81010010-81010029 MS.gene049173:CDS 45.0%
! ACTGTTCGTGGCGATTCTTT+TGG + chr3.3:81008284-81008303 MS.gene049173:intron 45.0%
! ATGGAGAGTGTACATGAAGG+AGG - chr3.3:81007602-81007621 None:intergenic 45.0%
! ATGGAGAGTGTAGATGAAGG+AGG - chr3.3:81009349-81009368 None:intergenic 45.0%
! CATGTGATGGCATTTGAGGT+TGG + chr3.3:81009911-81009930 MS.gene049173:CDS 45.0%
! CTACTGTTCGTGGGGATTTT+GGG + chr3.3:81010011-81010030 MS.gene049173:CDS 45.0%
! TCCTGCAGAAAGTGGACTTA+TGG + chr3.3:81009235-81009254 MS.gene049173:CDS 45.0%
!! TTATGGTACGACTGGCCTAA+CGG + chr3.3:81009252-81009271 MS.gene049173:CDS 45.0%
!!! ATTTTTAAATCAATAAAAAA+AGG + chr3.3:81008898-81008917 MS.gene049173:intron 5.0%
!!! TTTTTAAATCAATAAAAAAA+GGG + chr3.3:81008899-81008918 MS.gene049173:intron 5.0%
AAGGTCGTCCAGTTTCCTGT+AGG + chr3.3:81009387-81009406 MS.gene049173:CDS 50.0%
ACCTTGCAATGGCTGTCTGA+GGG - chr3.3:81009372-81009391 None:intergenic 50.0%
CAACATGGACAACCTTGCAG+TGG - chr3.3:81007636-81007655 None:intergenic 50.0%
CACGTCCATCTAGCGTGAAA+TGG + chr3.3:81008655-81008674 MS.gene049173:intron 50.0%
CAGTGCTTGAGGATGTGCAT+TGG + chr3.3:81008210-81008229 MS.gene049173:CDS 50.0%
CGTTCTCTTCTCACTCTCGA+TGG + chr3.3:81007399-81007418 MS.gene049173:CDS 50.0%
GAAACTGGACGACCTTGCAA+TGG - chr3.3:81009383-81009402 None:intergenic 50.0%
TACGACCTCGAATGGACCAA+CGG + chr3.3:81009321-81009340 MS.gene049173:CDS 50.0%
TCACTCGAAGGCCTGTTAAG+TGG + chr3.3:81007779-81007798 MS.gene049173:CDS 50.0%
TCCATCTAGCGTGAAATGGC+AGG + chr3.3:81008659-81008678 MS.gene049173:intron 50.0%
TCGTCGTTTACGACCTCGAA+TGG + chr3.3:81009313-81009332 MS.gene049173:CDS 50.0%
TCTCTTCTCACTCTCGATGG+CGG + chr3.3:81007402-81007421 MS.gene049173:CDS 50.0%
TTCGATGGCTGAGCCAATTC+CGG + chr3.3:81009161-81009180 MS.gene049173:CDS 50.0%
! GGGATGGAGAGTGTACATGA+AGG - chr3.3:81007605-81007624 None:intergenic 50.0%
! GGGATGGAGAGTGTAGATGA+AGG - chr3.3:81009352-81009371 None:intergenic 50.0%
! TTATGGTACGACTGGCCCAA+CGG + chr3.3:81007505-81007524 MS.gene049173:CDS 50.0%
!! CTTGAGGGCGCTACGTATTT+AGG + chr3.3:81009429-81009448 MS.gene049173:CDS 50.0%
!! GTAGATGAAGGAGGTACCGT+TGG - chr3.3:81009340-81009359 None:intergenic 50.0%
CAGTGCTTGAGGATCCGCAT+TGG + chr3.3:81009936-81009955 MS.gene049173:CDS 55.0%
CATGGACAACCTTGCAGTGG+CGG - chr3.3:81007633-81007652 None:intergenic 55.0%
CTGAGCCAATTCCGGCTGTT+TGG + chr3.3:81009169-81009188 MS.gene049173:CDS 55.0%
GACCTTGCAATGGCTGTCTG+AGG - chr3.3:81009373-81009392 None:intergenic 55.0%
GCTAGATGGACGTGATCACG+AGG - chr3.3:81008649-81008668 None:intergenic 55.0%
TCCCTCAGACAGCCATTGCA+AGG + chr3.3:81009368-81009387 MS.gene049173:CDS 55.0%
TGAGGTTGGAGCAGTGCTTG+AGG + chr3.3:81008199-81008218 MS.gene049173:CDS 55.0%
TGCAATGGCTGTCTGAGGGA+TGG - chr3.3:81009368-81009387 None:intergenic 55.0%
! AGGTACCGTTGGTCCATTCG+AGG - chr3.3:81009329-81009348 None:intergenic 55.0%
! GCCTGCCATTTCACGCTAGA+TGG - chr3.3:81008663-81008682 None:intergenic 55.0%
! GCTTGAGGATGTGCATTGGC+AGG + chr3.3:81008214-81008233 MS.gene049173:CDS 55.0%
AACTGCTCCGGCCAAACAGC+CGG - chr3.3:81009183-81009202 None:intergenic 60.0%
GACAACCTTGCAGTGGCGGT+CGG - chr3.3:81007629-81007648 None:intergenic 60.0%
GAGCGGAGTCCTGCAGAAAG+TGG + chr3.3:81009227-81009246 MS.gene049173:CDS 60.0%
GCCAATTCCGGCTGTTTGGC+CGG + chr3.3:81009173-81009192 MS.gene049173:CDS 60.0%
TCCGGCCAAACAGCCGGAAT+TGG - chr3.3:81009177-81009196 None:intergenic 60.0%
TGCTGCTGCTGCTGCTGCAT+AGG + chr3.3:81008334-81008353 MS.gene049173:intron 60.0%
! GCTTGAGGATCCGCATTGGC+AGG + chr3.3:81009940-81009959 MS.gene049173:CDS 60.0%
AACCTTGCAGTGGCGGTCGG+AGG - chr3.3:81007626-81007645 None:intergenic 65.0%
AACTGCTCCGGCCAAGCTGC+CGG - chr3.3:81007436-81007455 None:intergenic 65.0%
ACCTTGCAGTGGCGGTCGGA+GGG - chr3.3:81007625-81007644 None:intergenic 65.0%
!! CTCGATGGCGGAGCCAGTTC+CGG + chr3.3:81007414-81007433 MS.gene049173:CDS 65.0%
CGGAGCCAGTTCCGGCAGCT+TGG + chr3.3:81007422-81007441 MS.gene049173:CDS 70.0%
GCCAGTTCCGGCAGCTTGGC+CGG + chr3.3:81007426-81007445 MS.gene049173:CDS 70.0%
TCCCTCCGACCGCCACTGCA+AGG + chr3.3:81007621-81007640 MS.gene049173:CDS 70.0%
TCCGGCCAAGCTGCCGGAAC+TGG - chr3.3:81007430-81007449 None:intergenic 70.0%
TGCAGTGGCGGTCGGAGGGA+TGG - chr3.3:81007621-81007640 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 81007349 81010072 81007349 ID=MS.gene049173
chr3.3 mRNA 81007349 81010072 81007349 ID=MS.gene049173.t1;Parent=MS.gene049173
chr3.3 exon 81007349 81007814 81007349 ID=MS.gene049173.t1.exon1;Parent=MS.gene049173.t1
chr3.3 CDS 81007349 81007814 81007349 ID=cds.MS.gene049173.t1;Parent=MS.gene049173.t1
chr3.3 exon 81008174 81008270 81008174 ID=MS.gene049173.t1.exon2;Parent=MS.gene049173.t1
chr3.3 CDS 81008174 81008270 81008174 ID=cds.MS.gene049173.t1;Parent=MS.gene049173.t1
chr3.3 exon 81009083 81009561 81009083 ID=MS.gene049173.t1.exon3;Parent=MS.gene049173.t1
chr3.3 CDS 81009083 81009561 81009083 ID=cds.MS.gene049173.t1;Parent=MS.gene049173.t1
chr3.3 exon 81009894 81010072 81009894 ID=MS.gene049173.t1.exon4;Parent=MS.gene049173.t1
chr3.3 CDS 81009894 81010072 81009894 ID=cds.MS.gene049173.t1;Parent=MS.gene049173.t1
Gene Sequence

>MS.gene049173

ATGGCCTCTGCAATAGAACACACCTTTACGGTAACGGTACTACTCTCTGTCGTTCTCTTCTCACTCTCGATGGCGGAGCCAGTTCCGGCAGCTTGGCCGGAGCAGTTTCATTCCGTACTATTCATGAACAGAAGCGGATCCCTACAGAAATTGGACTTATGGTACGACTGGCCCAACGGTCGAAACTTCAACATCATCCAAGATCAACTCAATGATATTGTAGATTACGACCTTGAATGGACCAATGGAACCTCCTTCATGTACACTCTCCATCCCTCCGACCGCCACTGCAAGGTTGTCCATGTTGAAGTTGGTATTCTCCGTCCTAATTGGCTTGATGATGCTACCTATTTAGGTCAAGAACAAGTTGATAATTTCCTATGTAATGTTTGGGAGAAAGTTGATTTCATTGTGTATTATGAAGATGTTCTCACTCGAAGGCCTGTTAAGTGGATCTTCTACACAGGTTTGTTTACTTCTTTCTTTCTAATATCACTCCTAGTTACTGTTTGGATTCATTGACTTATTTGGAAGAGTTTATAGAAACAGCTTATTACATGTCAATGAGTTTGTGAAAATAGCTTATAGCTTATATGATAACAATTTGTCGGTATAAAACTATTTGATTTTATTTCTTGTAATATAAAAAATTTGTACATAATCACTTGTATAGAAAGAGTTTATGCTGTAAGCCCTTGAACTTATTAGTTTATCATTTTCAAGAGATTGAATGAATGAGAATAAATTTATGATATTATTATTCTTTGAAATGTTGTTCATTCCTGTGAAATGAATTAAGGTTTGATATACTGGTAATTAATGCAGGATACACTGCTCATGTGATGACATTTGAGGTTGGAGCAGTGCTTGAGGATGTGCATTGGCAGGCTCCTGTATACTGCTTCAATCAGACTGAGAATATGTTAGAATCTGCTACTGTTCGTGGCGATTCTTTTGGAAGTTTGATGAGAGGCAAAGTCGATGCTGCTGCTGCTGCTGCTGCATAGGAGCTGTTCATTATGAAATGTTCAAACTGTATATGCCTAATGTATTTCCGAATGATTGTTTAGTTTAGCCAAATATTAACATCAATTTTCCATCATCATCTTGTAGGGATGGATGCAATATGGTTTTCATCCAAACTCATAAATCAAATTTTGTCAGCTCAGCTATCTTTTACTTTTGGGAAATAATGAACTGAATTGGTAAAAGTCTCACAAGTGATAAACAAGACAGATTTTGGTGAAAATGTTAACGTAGCAATTGATTGATTATAAGTAGAAATAATTTCGTAATACCTCGTGATCACGTCCATCTAGCGTGAAATGGCAGGCTTGTGTGTATAGCACCCGAAAATTAATACGCTCTGTTGTGTGGAAAGTATCGATTGTGCATAATGTATTGATTGCAGAATCACTTCCAATTCGCTTATTAGTACCTAAGAGACTGTTTTTAGATAGGTAGAGGGACTAAATAGTATAATAATTTAAAATACCCAGAGATTAAATCTAAAAAAATTGGTAAATCAAAATGGCAGATGAAAGTAAGTATTTTTAAATCAATAAAAAAAGGGACAAGAAATAAATAATAAATAAAAAAAAACTTGTTTGGAAGAATTAAATGGAGTTTCCACCTCACATTCATCAAACTCTTATCTTTTCTGATAATTTCCAAAATGACTTGTTTTTTGTTTCCACTTTGAGTGTTTCTCTTATTTGTTGTGATGAAACTTAGAGCAGCCATGGCCTCTGCAATAGAACAACTATCTAGGATATTCCTATATGTCATTCTCTTCTCTCTCTCGGCTTCATATTCGATGGCTGAGCCAATTCCGGCTGTTTGGCCGGAGCAGTTTCATGCCTTAATGTTTATGAACAAGAGCGGAGTCCTGCAGAAAGTGGACTTATGGTACGACTGGCCTAACGGTCGAAACTTCAACATCATCCAAAATCAACTCAATGCTGTCGTCGTTTACGACCTCGAATGGACCAACGGTACCTCCTTCATCTACACTCTCCATCCCTCAGACAGCCATTGCAAGGTCGTCCAGTTTCCTGTAGGTATTCTCCGTCCTAATTTTCTTGAGGGCGCTACGTATTTAGGTCAAGAAGATGTTGATAATTTCCTTTGTAATGTTTGGACGAAAGTTGATTTCATTGTGTACTATGAAGACGTTCTCACTCGTAGACCTGTTAAGTGGTTCTTCTACTCAGGTTTGGTTTTGTCTCTCTTATATTATCACTCTTGGGCTATATTTGGATTTACCTATTTAAGCTTATCTTGTCATACATTTTGGGAGAGTTTGCAGAAAGTACTTATGACATGTTCATAATATTACCTTATATGAAACAATTTTTCTTATATTTCTAGTAATAGAAATAACTTATACATAAACATTTATATGAAAAACGTTTATTCTATAACCGATTGAGCTTATTAATTATTAGTTTATCAACCAAGATATTGAATGAAGTGAATAAAATTATAATATTGTTATTGTTGCTGTGAAATGAAGTAAAGTTTGATATAGTGATAATTTGAATAGATGGAGGATATACTGCTCATGTGATGGCATTTGAGGTTGGAGCAGTGCTTGAGGATCCGCATTGGCAGGCTCCTATATACTGCTTCAATCAGACTGAGATAATAATAATAGAATCCACTACTGTTCGTGGGGATTTTGGGAGTTTGATGAGAGGCAAAGTTGATGCTGCTGCTGCATAA

Protein sequence

>MS.gene049173.t1

MASAIEHTFTVTVLLSVVLFSLSMAEPVPAAWPEQFHSVLFMNRSGSLQKLDLWYDWPNGRNFNIIQDQLNDIVDYDLEWTNGTSFMYTLHPSDRHCKVVHVEVGILRPNWLDDATYLGQEQVDNFLCNVWEKVDFIVYYEDVLTRRPVKWIFYTGYTAHVMTFEVGAVLEDVHWQAPVYCFNQTENIAAMASAIEQLSRIFLYVILFSLSASYSMAEPIPAVWPEQFHALMFMNKSGVLQKVDLWYDWPNGRNFNIIQNQLNAVVVYDLEWTNGTSFIYTLHPSDSHCKVVQFPVGILRPNFLEGATYLGQEDVDNFLCNVWTKVDFIVYYEDVLTRRPVKWFFYSDGGYTAHVMAFEVGAVLEDPHWQAPIYCFNQTEIIIIESTTVRGDFGSLMRGKVDAAAA