Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80977.t1 | AFK42949.1 | 93 | 301 | 7 | 1 | 1 | 301 | 1 | 287 | 5.80E-149 | 537 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80977.t1 | Q9M886 | 60.4 | 285 | 69 | 4 | 1 | 281 | 1 | 245 | 3.6e-83 | 309.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80977.t1 | I3SRQ7 | 93.0 | 301 | 7 | 1 | 1 | 301 | 1 | 287 | 4.2e-149 | 537.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene80977.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050710 | MS.gene80977 | 0.817781 | 2.76E-52 | -1.69E-46 |
| MS.gene053108 | MS.gene80977 | 0.83653 | 8.87E-57 | -1.69E-46 |
| MS.gene056387 | MS.gene80977 | -0.840245 | 9.77E-58 | -1.69E-46 |
| MS.gene056618 | MS.gene80977 | 0.819756 | 9.82E-53 | -1.69E-46 |
| MS.gene05926 | MS.gene80977 | 0.800452 | 1.43E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80977.t1 | MTR_7g007010 | 97.342 | 301 | 8 | 0 | 1 | 301 | 1 | 301 | 0.0 | 597 |
| MS.gene80977.t1 | MTR_6g018270 | 60.000 | 310 | 83 | 9 | 1 | 301 | 1 | 278 | 1.49e-112 | 327 |
| MS.gene80977.t1 | MTR_6g453130 | 44.395 | 223 | 114 | 4 | 1 | 213 | 1 | 223 | 4.31e-57 | 184 |
| MS.gene80977.t1 | MTR_4g095600 | 61.417 | 127 | 46 | 1 | 3 | 129 | 1 | 124 | 1.66e-54 | 177 |
| MS.gene80977.t1 | MTR_1g110840 | 46.009 | 213 | 97 | 6 | 1 | 197 | 1 | 211 | 1.19e-52 | 172 |
| MS.gene80977.t1 | MTR_6g054150 | 51.149 | 174 | 68 | 6 | 1 | 164 | 1 | 167 | 1.20e-52 | 172 |
| MS.gene80977.t1 | MTR_5g015880 | 64.545 | 110 | 39 | 0 | 3 | 112 | 1 | 110 | 5.64e-52 | 171 |
| MS.gene80977.t1 | MTR_6g054080 | 50.575 | 174 | 69 | 6 | 1 | 164 | 1 | 167 | 1.84e-51 | 169 |
| MS.gene80977.t1 | MTR_1g106420 | 60.577 | 104 | 41 | 0 | 3 | 106 | 1 | 104 | 7.12e-45 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80977.t1 | AT3G02550 | 60.351 | 285 | 69 | 4 | 1 | 281 | 1 | 245 | 1.75e-113 | 328 |
| MS.gene80977.t1 | AT1G67100 | 82.270 | 141 | 22 | 2 | 1 | 138 | 1 | 141 | 1.13e-82 | 249 |
| MS.gene80977.t1 | AT1G68510 | 62.209 | 172 | 55 | 2 | 1 | 162 | 1 | 172 | 2.81e-74 | 228 |
| MS.gene80977.t1 | AT3G49940 | 70.000 | 110 | 33 | 0 | 3 | 112 | 1 | 110 | 3.33e-55 | 179 |
| MS.gene80977.t1 | AT5G67420 | 65.455 | 110 | 38 | 0 | 3 | 112 | 1 | 110 | 4.67e-54 | 177 |
| MS.gene80977.t1 | AT5G67420 | 65.455 | 110 | 38 | 0 | 3 | 112 | 1 | 110 | 4.67e-54 | 177 |
| MS.gene80977.t1 | AT4G37540 | 66.667 | 111 | 37 | 0 | 3 | 113 | 1 | 111 | 3.54e-53 | 174 |
Find 96 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCATTAGCTTGTGATTC+AGG | 0.204656 | 7.3:-90895988 | None:intergenic |
| GGCTCATGGAATGTGGAGTT+GGG | 0.290152 | 7.3:+90897041 | MS.gene80977:CDS |
| AAACCGACAGAACCGTAAAT+TGG | 0.290929 | 7.3:-90896414 | None:intergenic |
| ACCAGCACGACCGTAGAATT+TGG | 0.324902 | 7.3:-90896022 | None:intergenic |
| TGGAGAGGAAAAGGTTGGTT+TGG | 0.330903 | 7.3:+90896929 | MS.gene80977:CDS |
| GTTGGTTTGGAGCTGACTCT+TGG | 0.364251 | 7.3:+90896942 | MS.gene80977:CDS |
| GCAGCTGCTTCCGAAGTTAT+CGG | 0.368337 | 7.3:-90896507 | None:intergenic |
| GTCTGAGGCGGTTGCGGTGG+TGG | 0.368975 | 7.3:+90896803 | MS.gene80977:CDS |
| CGAATAGTGAATCCAATTTA+CGG | 0.370383 | 7.3:+90896402 | MS.gene80977:CDS |
| TTGACATAGCTGCCAACTTC+CGG | 0.388062 | 7.3:-90896445 | None:intergenic |
| CTCTTCTTGTATCTTCGGCT+TGG | 0.390746 | 7.3:-90896658 | None:intergenic |
| GGAGTTGGGGCTTCAATATC+CGG | 0.399627 | 7.3:+90897055 | MS.gene80977:CDS |
| GAAAAGAAGGGTTGTATTGA+AGG | 0.400262 | 7.3:+90897007 | MS.gene80977:CDS |
| TGGCTCATGGAATGTGGAGT+TGG | 0.402516 | 7.3:+90897040 | MS.gene80977:CDS |
| ACGGTTCTGTCGGTTTATTA+TGG | 0.404405 | 7.3:+90896421 | MS.gene80977:CDS |
| CCTCTCCACTCTCACCGGTT+CGG | 0.407185 | 7.3:-90896914 | None:intergenic |
| TTGGTTTGGAGCTGACTCTT+GGG | 0.409856 | 7.3:+90896943 | MS.gene80977:CDS |
| GATCTTATTTAGAGATGAAC+CGG | 0.409879 | 7.3:+90896863 | MS.gene80977:CDS |
| GCTGACTCTTGGGCTTGAAC+CGG | 0.417029 | 7.3:+90896953 | MS.gene80977:CDS |
| AAAGAGTAGTAATAAGATCA+AGG | 0.417076 | 7.3:+90896683 | MS.gene80977:CDS |
| CGGTTCATCACCTCCTCAAC+CGG | 0.421068 | 7.3:-90896747 | None:intergenic |
| CCACCAGTCTGAGGCGGTTG+CGG | 0.421397 | 7.3:+90896797 | MS.gene80977:CDS |
| CTCTCACCGGTTCGGTCAGC+CGG | 0.422448 | 7.3:-90896906 | None:intergenic |
| GCCGACCGGTTCGGCTGAAC+CGG | 0.423269 | 7.3:+90896728 | MS.gene80977:CDS |
| CGACACATGACGGATGTCAT+AGG | 0.427071 | 7.3:-90896556 | None:intergenic |
| ACCGGTCGGCTCAGTTGAAC+CGG | 0.430775 | 7.3:-90896715 | None:intergenic |
| GAGGCGGTTGCGGTGGTGGA+TGG | 0.434659 | 7.3:+90896807 | MS.gene80977:CDS |
| CGGTGAGAGTGGAGAGGAAA+AGG | 0.443712 | 7.3:+90896920 | MS.gene80977:CDS |
| CGAACCTGGACGAAGATGTT+CGG | 0.443982 | 7.3:-90896070 | None:intergenic |
| TGGCATTAGCTTGTGATTCA+GGG | 0.445704 | 7.3:-90895987 | None:intergenic |
| GAACCTGGACGAAGATGTTC+GGG | 0.446611 | 7.3:-90896069 | None:intergenic |
| CTCAACCGGTTCAGCCGAAC+CGG | 0.449085 | 7.3:-90896733 | None:intergenic |
| GTATTGAAGGATTGTGGTGT+TGG | 0.451012 | 7.3:+90897020 | MS.gene80977:CDS |
| CTTCGGAAGCAGCTGCTAAC+GGG | 0.456571 | 7.3:+90896514 | MS.gene80977:CDS |
| GCCAAATTCTACGGTCGTGC+TGG | 0.457716 | 7.3:+90896021 | MS.gene80977:CDS |
| GAAGCAGCTGCTAACGGGAG+GGG | 0.464479 | 7.3:+90896519 | MS.gene80977:CDS |
| ATGAAGCCGGCTGACCGAAC+CGG | 0.465806 | 7.3:+90896900 | MS.gene80977:CDS |
| ACATGATAAACACGTGAAAC+CGG | 0.466817 | 7.3:-90896972 | None:intergenic |
| GTGTTTCTCGCCAAATTCTA+CGG | 0.467341 | 7.3:+90896012 | MS.gene80977:CDS |
| TTCAACTGAGCCGACCGGTT+CGG | 0.471438 | 7.3:+90896719 | MS.gene80977:CDS |
| GAGAGTGGAGAGGAAAAGGT+TGG | 0.474231 | 7.3:+90896924 | MS.gene80977:CDS |
| AAGATCAAGGGATTTGAATC+CGG | 0.474733 | 7.3:+90896696 | MS.gene80977:CDS |
| ATTTAGAGATGAACCGGAGT+TGG | 0.489333 | 7.3:+90896869 | MS.gene80977:CDS |
| TGGTTCCTGTGAAGAAAAGA+AGG | 0.496741 | 7.3:+90896994 | MS.gene80977:CDS |
| AAGCCAAACCCGGTCTAAGC+CGG | 0.498806 | 7.3:-90897074 | None:intergenic |
| GTTTATTATGGTCCGGAAGT+TGG | 0.502610 | 7.3:+90896433 | MS.gene80977:CDS |
| ATGTCATAGGCTTTGAGTGG+TGG | 0.508004 | 7.3:-90896543 | None:intergenic |
| GACTCTTTGTTGAGTTAACT+CGG | 0.513097 | 7.3:-90896604 | None:intergenic |
| CCACCGCAACCGCCTCAGAC+TGG | 0.514674 | 7.3:-90896800 | None:intergenic |
| AGGATTGTGGTGTTGGCTCA+TGG | 0.516288 | 7.3:+90897027 | MS.gene80977:CDS |
| GCATAAGACCTTGTTTGCAA+TGG | 0.519342 | 7.3:+90895956 | MS.gene80977:CDS |
| GTTCGGGACCGGCGTTAACA+AGG | 0.520425 | 7.3:-90896053 | None:intergenic |
| CGGTTCGGCTGAACCGGTTG+AGG | 0.520558 | 7.3:+90896734 | MS.gene80977:CDS |
| CCAGTCTGAGGCGGTTGCGG+TGG | 0.522968 | 7.3:+90896800 | MS.gene80977:CDS |
| CGGTTGAGGAGGTGATGAAC+CGG | 0.528263 | 7.3:+90896748 | MS.gene80977:CDS |
| GCTGACCGAACCGGTGAGAG+TGG | 0.534361 | 7.3:+90896909 | MS.gene80977:CDS |
| ACTTCGGAAGCAGCTGCTAA+CGG | 0.537457 | 7.3:+90896513 | MS.gene80977:CDS |
| TCCGAAGTTATCGGTGTGAT+CGG | 0.538262 | 7.3:-90896498 | None:intergenic |
| TGTCATAGGCTTTGAGTGGT+GGG | 0.543552 | 7.3:-90896542 | None:intergenic |
| GGTTGTAGAGTACTAAGAAA+AGG | 0.544678 | 7.3:+90895916 | MS.gene80977:CDS |
| GCTCATGGAATGTGGAGTTG+GGG | 0.544869 | 7.3:+90897042 | MS.gene80977:CDS |
| AAGAGTAGTAATAAGATCAA+GGG | 0.549548 | 7.3:+90896684 | MS.gene80977:CDS |
| GGTCCCGAACATCTTCGTCC+AGG | 0.558956 | 7.3:+90896066 | MS.gene80977:CDS |
| CGGAAGCAGCTGCTAACGGG+AGG | 0.561761 | 7.3:+90896517 | MS.gene80977:CDS |
| TGGACGAAGATGTTCGGGAC+CGG | 0.564250 | 7.3:-90896064 | None:intergenic |
| TTCGGCTGAACCGGTTGAGG+AGG | 0.569691 | 7.3:+90896737 | MS.gene80977:CDS |
| TCTGTCGGTTTATTATGGTC+CGG | 0.572196 | 7.3:+90896426 | MS.gene80977:CDS |
| AATCCAATTTACGGTTCTGT+CGG | 0.572464 | 7.3:+90896411 | MS.gene80977:CDS |
| GGAAGCAGCTGCTAACGGGA+GGG | 0.580906 | 7.3:+90896518 | MS.gene80977:CDS |
| TGGTGTTGGCTCATGGAATG+TGG | 0.583661 | 7.3:+90897034 | MS.gene80977:CDS |
| GGTTTCACGTGTTTATCATG+TGG | 0.585512 | 7.3:+90896974 | MS.gene80977:CDS |
| ACCGGTTCAGCCGAACCGGT+CGG | 0.591722 | 7.3:-90896729 | None:intergenic |
| TCCGGTTCAACTGAGCCGAC+CGG | 0.592967 | 7.3:+90896714 | MS.gene80977:CDS |
| TGACATCCGTCATGTGTCGA+AGG | 0.595504 | 7.3:+90896560 | MS.gene80977:CDS |
| TTTCCTCCTTCGACACATGA+CGG | 0.600098 | 7.3:-90896566 | None:intergenic |
| TCAAGACTCGATCGCGTAAG+CGG | 0.604344 | 7.3:+90896625 | MS.gene80977:CDS |
| AGGGTTGTATTGAAGGATTG+TGG | 0.614044 | 7.3:+90897014 | MS.gene80977:CDS |
| ACCGATCACACCGATAACTT+CGG | 0.614267 | 7.3:+90896497 | MS.gene80977:CDS |
| TGTGTCGAAGGAGGAAAACT+CGG | 0.616290 | 7.3:+90896572 | MS.gene80977:CDS |
| AAAATGCGGATGAGTTGTAA+CGG | 0.616520 | 7.3:+90895895 | None:intergenic |
| GTCGATTAGCCACCAGTCTG+AGG | 0.618436 | 7.3:+90896788 | MS.gene80977:CDS |
| GTAGAATTTGGCGAGAAACA+CGG | 0.619114 | 7.3:-90896010 | None:intergenic |
| CAAGCCGAAGATACAAGAAG+AGG | 0.623975 | 7.3:+90896659 | MS.gene80977:CDS |
| CATCCGTCATGTGTCGAAGG+AGG | 0.629554 | 7.3:+90896563 | MS.gene80977:CDS |
| CCGCAACCGCCTCAGACTGG+TGG | 0.630942 | 7.3:-90896797 | None:intergenic |
| ACGACTCATGACTAGCTGAC+CGG | 0.638954 | 7.3:-90896767 | None:intergenic |
| GCAGCTATGTCAAGCCGCAG+TGG | 0.645652 | 7.3:+90896455 | MS.gene80977:CDS |
| TTGAGTTAACTCGGTCGACG+CGG | 0.651446 | 7.3:-90896595 | None:intergenic |
| CCGAACCGGTGAGAGTGGAG+AGG | 0.652917 | 7.3:+90896914 | MS.gene80977:CDS |
| CTCATGAACCTTGTTAACGC+CGG | 0.654635 | 7.3:+90896045 | MS.gene80977:CDS |
| TCGTTGTTGTACGAAGCATG+TGG | 0.660850 | 7.3:+90896378 | MS.gene80977:CDS |
| GATTAGCCACCAGTCTGAGG+CGG | 0.698548 | 7.3:+90896791 | MS.gene80977:CDS |
| CGGATGTCATAGGCTTTGAG+TGG | 0.702654 | 7.3:-90896546 | None:intergenic |
| GGTTCCTGTGAAGAAAAGAA+GGG | 0.756021 | 7.3:+90896995 | MS.gene80977:CDS |
| GAATTTGGCGAGAAACACGG+TGG | 0.783343 | 7.3:-90896007 | None:intergenic |
| TTTCAAAACAGCTTCCACTG+CGG | 0.791709 | 7.3:-90896469 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAATATATCAACTTTTGT+TGG | - | chr7.3:90896245-90896264 | None:intergenic | 20.0% |
| ! | AAAGAGTAGTAATAAGATCA+AGG | + | chr7.3:90896683-90896702 | MS.gene80977:CDS | 25.0% |
| ! | AAGAGTAGTAATAAGATCAA+GGG | + | chr7.3:90896684-90896703 | MS.gene80977:CDS | 25.0% |
| ! | ATCTCTCTATAAGAAAAAGT+TGG | + | chr7.3:90896218-90896237 | MS.gene80977:intron | 25.0% |
| ATATGTGTGTATTGCATGTT+TGG | - | chr7.3:90896200-90896219 | None:intergenic | 30.0% | |
| CGAATAGTGAATCCAATTTA+CGG | + | chr7.3:90896402-90896421 | MS.gene80977:CDS | 30.0% | |
| GTATTGCATGTTTGGATAAA+CGG | - | chr7.3:90896192-90896211 | None:intergenic | 30.0% | |
| TTAGTGCATGTTTAGATTGA+CGG | + | chr7.3:90896125-90896144 | MS.gene80977:intron | 30.0% | |
| ! | GATCTTATTTAGAGATGAAC+CGG | + | chr7.3:90896863-90896882 | MS.gene80977:CDS | 30.0% |
| ! | TTTTCCTCTTCTTGTATCTT+CGG | - | chr7.3:90896666-90896685 | None:intergenic | 30.0% |
| AAGATCAAGGGATTTGAATC+CGG | + | chr7.3:90896696-90896715 | MS.gene80977:CDS | 35.0% | |
| AATCCAATTTACGGTTCTGT+CGG | + | chr7.3:90896411-90896430 | MS.gene80977:CDS | 35.0% | |
| ACATGATAAACACGTGAAAC+CGG | - | chr7.3:90896975-90896994 | None:intergenic | 35.0% | |
| GAAAAGAAGGGTTGTATTGA+AGG | + | chr7.3:90897007-90897026 | MS.gene80977:CDS | 35.0% | |
| GACTCTTTGTTGAGTTAACT+CGG | - | chr7.3:90896607-90896626 | None:intergenic | 35.0% | |
| ! | CTTTTGATCCATTGCAAACA+AGG | - | chr7.3:90895967-90895986 | None:intergenic | 35.0% |
| ! | GGTTGTAGAGTACTAAGAAA+AGG | + | chr7.3:90895916-90895935 | MS.gene80977:CDS | 35.0% |
| AAACCGACAGAACCGTAAAT+TGG | - | chr7.3:90896417-90896436 | None:intergenic | 40.0% | |
| AGGGTTGTATTGAAGGATTG+TGG | + | chr7.3:90897014-90897033 | MS.gene80977:CDS | 40.0% | |
| ATTTAGAGATGAACCGGAGT+TGG | + | chr7.3:90896869-90896888 | MS.gene80977:CDS | 40.0% | |
| GGTTCCTGTGAAGAAAAGAA+GGG | + | chr7.3:90896995-90897014 | MS.gene80977:CDS | 40.0% | |
| GGTTTCACGTGTTTATCATG+TGG | + | chr7.3:90896974-90896993 | MS.gene80977:CDS | 40.0% | |
| GTAGAATTTGGCGAGAAACA+CGG | - | chr7.3:90896013-90896032 | None:intergenic | 40.0% | |
| GTATTGAAGGATTGTGGTGT+TGG | + | chr7.3:90897020-90897039 | MS.gene80977:CDS | 40.0% | |
| GTGTTTCTCGCCAAATTCTA+CGG | + | chr7.3:90896012-90896031 | MS.gene80977:CDS | 40.0% | |
| GTTTATTATGGTCCGGAAGT+TGG | + | chr7.3:90896433-90896452 | MS.gene80977:CDS | 40.0% | |
| TGGTTCCTGTGAAGAAAAGA+AGG | + | chr7.3:90896994-90897013 | MS.gene80977:CDS | 40.0% | |
| TTTCAAAACAGCTTCCACTG+CGG | - | chr7.3:90896472-90896491 | None:intergenic | 40.0% | |
| ! | ACAACCCTTCTTTTCTTCAC+AGG | - | chr7.3:90897002-90897021 | None:intergenic | 40.0% |
| ! | GCATAAGACCTTGTTTGCAA+TGG | + | chr7.3:90895956-90895975 | MS.gene80977:CDS | 40.0% |
| !! | ACGGTTCTGTCGGTTTATTA+TGG | + | chr7.3:90896421-90896440 | MS.gene80977:CDS | 40.0% |
| !! | TCTGTCGGTTTATTATGGTC+CGG | + | chr7.3:90896426-90896445 | MS.gene80977:CDS | 40.0% |
| !! | TGGCATTAGCTTGTGATTCA+GGG | - | chr7.3:90895990-90896009 | None:intergenic | 40.0% |
| !! | TTCATTTTTCGGTCCAACTC+CGG | - | chr7.3:90896885-90896904 | None:intergenic | 40.0% |
| !!! | AGTGTCACTTTTTACGAACC+TGG | - | chr7.3:90896087-90896106 | None:intergenic | 40.0% |
| ACCGATCACACCGATAACTT+CGG | + | chr7.3:90896497-90896516 | MS.gene80977:CDS | 45.0% | |
| CAAGCCGAAGATACAAGAAG+AGG | + | chr7.3:90896659-90896678 | MS.gene80977:CDS | 45.0% | |
| CTCATGAACCTTGTTAACGC+CGG | + | chr7.3:90896045-90896064 | MS.gene80977:CDS | 45.0% | |
| CTCTTCTTGTATCTTCGGCT+TGG | - | chr7.3:90896661-90896680 | None:intergenic | 45.0% | |
| GTTGGACCGAAAAATGAAGC+CGG | + | chr7.3:90896887-90896906 | MS.gene80977:CDS | 45.0% | |
| TCCGAAGTTATCGGTGTGAT+CGG | - | chr7.3:90896501-90896520 | None:intergenic | 45.0% | |
| TCGTTGTTGTACGAAGCATG+TGG | + | chr7.3:90896378-90896397 | MS.gene80977:CDS | 45.0% | |
| TGTGTCGAAGGAGGAAAACT+CGG | + | chr7.3:90896572-90896591 | MS.gene80977:CDS | 45.0% | |
| TTGACATAGCTGCCAACTTC+CGG | - | chr7.3:90896448-90896467 | None:intergenic | 45.0% | |
| TTTCCTCCTTCGACACATGA+CGG | - | chr7.3:90896569-90896588 | None:intergenic | 45.0% | |
| ! | TGGAGAGGAAAAGGTTGGTT+TGG | + | chr7.3:90896929-90896948 | MS.gene80977:CDS | 45.0% |
| !! | ATGTCATAGGCTTTGAGTGG+TGG | - | chr7.3:90896546-90896565 | None:intergenic | 45.0% |
| !! | GCAGTGGAAGCTGTTTTGAA+AGG | + | chr7.3:90896471-90896490 | MS.gene80977:CDS | 45.0% |
| !! | GTGGCATTAGCTTGTGATTC+AGG | - | chr7.3:90895991-90896010 | None:intergenic | 45.0% |
| !! | TGTCATAGGCTTTGAGTGGT+GGG | - | chr7.3:90896545-90896564 | None:intergenic | 45.0% |
| !! | TTGGTTTGGAGCTGACTCTT+GGG | + | chr7.3:90896943-90896962 | MS.gene80977:CDS | 45.0% |
| ACCAGCACGACCGTAGAATT+TGG | - | chr7.3:90896025-90896044 | None:intergenic | 50.0% | |
| ACTTCGGAAGCAGCTGCTAA+CGG | + | chr7.3:90896513-90896532 | MS.gene80977:CDS | 50.0% | |
| CGAACCTGGACGAAGATGTT+CGG | - | chr7.3:90896073-90896092 | None:intergenic | 50.0% | |
| GAACCTGGACGAAGATGTTC+GGG | - | chr7.3:90896072-90896091 | None:intergenic | 50.0% | |
| GAATTTGGCGAGAAACACGG+TGG | - | chr7.3:90896010-90896029 | None:intergenic | 50.0% | |
| GAGAGTGGAGAGGAAAAGGT+TGG | + | chr7.3:90896924-90896943 | MS.gene80977:CDS | 50.0% | |
| GCAGCTGCTTCCGAAGTTAT+CGG | - | chr7.3:90896510-90896529 | None:intergenic | 50.0% | |
| GCTCATGGAATGTGGAGTTG+GGG | + | chr7.3:90897042-90897061 | MS.gene80977:CDS | 50.0% | |
| GGAGTTGGGGCTTCAATATC+CGG | + | chr7.3:90897055-90897074 | MS.gene80977:CDS | 50.0% | |
| GGCTCATGGAATGTGGAGTT+GGG | + | chr7.3:90897041-90897060 | MS.gene80977:CDS | 50.0% | |
| TCAAGACTCGATCGCGTAAG+CGG | + | chr7.3:90896625-90896644 | MS.gene80977:CDS | 50.0% | |
| TGACATCCGTCATGTGTCGA+AGG | + | chr7.3:90896560-90896579 | MS.gene80977:CDS | 50.0% | |
| TGGCTCATGGAATGTGGAGT+TGG | + | chr7.3:90897040-90897059 | MS.gene80977:CDS | 50.0% | |
| TTGAGTTAACTCGGTCGACG+CGG | - | chr7.3:90896598-90896617 | None:intergenic | 50.0% | |
| ! | ACGACTCATGACTAGCTGAC+CGG | - | chr7.3:90896770-90896789 | None:intergenic | 50.0% |
| ! | CTTTTCCTCTCCACTCTCAC+CGG | - | chr7.3:90896922-90896941 | None:intergenic | 50.0% |
| !! | AGGATTGTGGTGTTGGCTCA+TGG | + | chr7.3:90897027-90897046 | MS.gene80977:CDS | 50.0% |
| !! | CGACACATGACGGATGTCAT+AGG | - | chr7.3:90896559-90896578 | None:intergenic | 50.0% |
| !! | CGGATGTCATAGGCTTTGAG+TGG | - | chr7.3:90896549-90896568 | None:intergenic | 50.0% |
| !! | GGTCAGCCGGCTTCATTTTT+CGG | - | chr7.3:90896896-90896915 | None:intergenic | 50.0% |
| !! | GTTGGTTTGGAGCTGACTCT+TGG | + | chr7.3:90896942-90896961 | MS.gene80977:CDS | 50.0% |
| !! | TGGTGTTGGCTCATGGAATG+TGG | + | chr7.3:90897034-90897053 | MS.gene80977:CDS | 50.0% |
| CATCCGTCATGTGTCGAAGG+AGG | + | chr7.3:90896563-90896582 | MS.gene80977:CDS | 55.0% | |
| CGGTGAGAGTGGAGAGGAAA+AGG | + | chr7.3:90896920-90896939 | MS.gene80977:CDS | 55.0% | |
| CGGTTCATCACCTCCTCAAC+CGG | - | chr7.3:90896750-90896769 | None:intergenic | 55.0% | |
| CGGTTGAGGAGGTGATGAAC+CGG | + | chr7.3:90896748-90896767 | MS.gene80977:CDS | 55.0% | |
| CTTCGGAAGCAGCTGCTAAC+GGG | + | chr7.3:90896514-90896533 | MS.gene80977:CDS | 55.0% | |
| GCCAAATTCTACGGTCGTGC+TGG | + | chr7.3:90896021-90896040 | MS.gene80977:CDS | 55.0% | |
| TGGACGAAGATGTTCGGGAC+CGG | - | chr7.3:90896067-90896086 | None:intergenic | 55.0% | |
| TTCAACTGAGCCGACCGGTT+CGG | + | chr7.3:90896719-90896738 | MS.gene80977:CDS | 55.0% | |
| ! | GATTAGCCACCAGTCTGAGG+CGG | + | chr7.3:90896791-90896810 | MS.gene80977:CDS | 55.0% |
| ! | GCTGACTCTTGGGCTTGAAC+CGG | + | chr7.3:90896953-90896972 | MS.gene80977:CDS | 55.0% |
| ! | GTCGATTAGCCACCAGTCTG+AGG | + | chr7.3:90896788-90896807 | MS.gene80977:CDS | 55.0% |
| ATGAAGCCGGCTGACCGAAC+CGG | + | chr7.3:90896900-90896919 | MS.gene80977:CDS | 60.0% | |
| GAAGCAGCTGCTAACGGGAG+GGG | + | chr7.3:90896519-90896538 | MS.gene80977:CDS | 60.0% | |
| GCAGCTATGTCAAGCCGCAG+TGG | + | chr7.3:90896455-90896474 | MS.gene80977:CDS | 60.0% | |
| GGAAGCAGCTGCTAACGGGA+GGG | + | chr7.3:90896518-90896537 | MS.gene80977:CDS | 60.0% | |
| GGTCCCGAACATCTTCGTCC+AGG | + | chr7.3:90896066-90896085 | MS.gene80977:CDS | 60.0% | |
| GTTCGGGACCGGCGTTAACA+AGG | - | chr7.3:90896056-90896075 | None:intergenic | 60.0% | |
| TCCGGTTCAACTGAGCCGAC+CGG | + | chr7.3:90896714-90896733 | MS.gene80977:CDS | 60.0% | |
| TTCGGCTGAACCGGTTGAGG+AGG | + | chr7.3:90896737-90896756 | MS.gene80977:CDS | 60.0% | |
| ! | ACCGGTCGGCTCAGTTGAAC+CGG | - | chr7.3:90896718-90896737 | None:intergenic | 60.0% |
| ! | CCTCTCCACTCTCACCGGTT+CGG | - | chr7.3:90896917-90896936 | None:intergenic | 60.0% |
| ! | CTCAACCGGTTCAGCCGAAC+CGG | - | chr7.3:90896736-90896755 | None:intergenic | 60.0% |
| CCGAACCGGTGAGAGTGGAG+AGG | + | chr7.3:90896914-90896933 | MS.gene80977:CDS | 65.0% | |
| CGGAAGCAGCTGCTAACGGG+AGG | + | chr7.3:90896517-90896536 | MS.gene80977:CDS | 65.0% | |
| GCTGACCGAACCGGTGAGAG+TGG | + | chr7.3:90896909-90896928 | MS.gene80977:CDS | 65.0% | |
| ! | ACCGGTTCAGCCGAACCGGT+CGG | - | chr7.3:90896732-90896751 | None:intergenic | 65.0% |
| ! | CCACCAGTCTGAGGCGGTTG+CGG | + | chr7.3:90896797-90896816 | MS.gene80977:CDS | 65.0% |
| ! | CGGTTCGGCTGAACCGGTTG+AGG | + | chr7.3:90896734-90896753 | MS.gene80977:CDS | 65.0% |
| !! | CTCTCACCGGTTCGGTCAGC+CGG | - | chr7.3:90896909-90896928 | None:intergenic | 65.0% |
| CCACCGCAACCGCCTCAGAC+TGG | - | chr7.3:90896803-90896822 | None:intergenic | 70.0% | |
| CCGCAACCGCCTCAGACTGG+TGG | - | chr7.3:90896800-90896819 | None:intergenic | 70.0% | |
| ! | CCAGTCTGAGGCGGTTGCGG+TGG | + | chr7.3:90896800-90896819 | MS.gene80977:CDS | 70.0% |
| ! | GTCTGAGGCGGTTGCGGTGG+TGG | + | chr7.3:90896803-90896822 | MS.gene80977:CDS | 70.0% |
| !! | GAGGCGGTTGCGGTGGTGGA+TGG | + | chr7.3:90896807-90896826 | MS.gene80977:CDS | 70.0% |
| !! | GCCGACCGGTTCGGCTGAAC+CGG | + | chr7.3:90896728-90896747 | MS.gene80977:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 90895898 | 90897082 | 90895898 | ID=MS.gene80977 |
| chr7.3 | mRNA | 90895898 | 90897082 | 90895898 | ID=MS.gene80977.t1;Parent=MS.gene80977 |
| chr7.3 | exon | 90895898 | 90896087 | 90895898 | ID=MS.gene80977.t1.exon1;Parent=MS.gene80977.t1 |
| chr7.3 | CDS | 90895898 | 90896087 | 90895898 | ID=cds.MS.gene80977.t1;Parent=MS.gene80977.t1 |
| chr7.3 | exon | 90896367 | 90897082 | 90896367 | ID=MS.gene80977.t1.exon2;Parent=MS.gene80977.t1 |
| chr7.3 | CDS | 90896367 | 90897082 | 90896367 | ID=cds.MS.gene80977.t1;Parent=MS.gene80977.t1 |
| Gene Sequence |
| Protein sequence |
