Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80999.t1 | XP_003621050.1 | 92.9 | 351 | 21 | 2 | 1 | 347 | 65 | 415 | 3.70E-177 | 630.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80999.t1 | A0LTY8 | 46.7 | 345 | 170 | 7 | 26 | 360 | 12 | 352 | 9.8e-70 | 265.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80999.t1 | G7KXR2 | 92.9 | 351 | 21 | 2 | 1 | 347 | 65 | 415 | 2.7e-177 | 630.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052290 | MS.gene80999 | -0.800626 | 1.32E-48 | -1.69E-46 |
| MS.gene052870 | MS.gene80999 | -0.801932 | 7.13E-49 | -1.69E-46 |
| MS.gene052872 | MS.gene80999 | -0.803683 | 3.10E-49 | -1.69E-46 |
| MS.gene053776 | MS.gene80999 | 0.803298 | 3.73E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAAATAATTTGTATC+TGG | - | 50632:8465-8484 | MS.gene80999:intron | 10.0% |
| !!! | ATACAAATTATTTAAAATTC+AGG | + | 50632:8464-8483 | MS.gene80999:intergenic | 10.0% |
| !!! | ATTTTAAATAATTTGTATCT+GGG | - | 50632:8466-8485 | MS.gene80999:intron | 10.0% |
| !!! | TACAAATTATTTAAAATTCA+GGG | + | 50632:8463-8482 | MS.gene80999:intergenic | 10.0% |
| !! | AAATTGTTTAATTAATCTGA+AGG | + | 50632:8622-8641 | MS.gene80999:intergenic | 15.0% |
| !! | GATATAATCAACATAATAAT+GGG | - | 50632:7377-7396 | MS.gene80999:intron | 15.0% |
| !! | TATAAAAAAAATAGAAATCG+AGG | + | 50632:6813-6832 | MS.gene80999:intergenic | 15.0% |
| !! | TGATATAATCAACATAATAA+TGG | - | 50632:7376-7395 | MS.gene80999:intron | 15.0% |
| !! | TTGTAAATTAAGAAGTTAAT+TGG | - | 50632:7625-7644 | MS.gene80999:intron | 15.0% |
| !!! | AAATTTGAAAGAAAAACTTT+TGG | + | 50632:6447-6466 | MS.gene80999:intergenic | 15.0% |
| !!! | AAGATCTAAAATTATACTTA+AGG | + | 50632:6856-6875 | MS.gene80999:intergenic | 15.0% |
| !!! | ATTTCTATTTTTTTTATAGG+AGG | - | 50632:6815-6834 | MS.gene80999:CDS | 15.0% |
| !!! | GACAATTTTTTCAAAATTTA+CGG | - | 50632:8511-8530 | MS.gene80999:intron | 15.0% |
| !!! | TCGATTTCTATTTTTTTTAT+AGG | - | 50632:6812-6831 | MS.gene80999:CDS | 15.0% |
| !!! | TTATTATGTTGATTATATCA+AGG | + | 50632:7376-7395 | MS.gene80999:intergenic | 15.0% |
| !!! | TTTCTATTTTTTTTATAGGA+GGG | - | 50632:6816-6835 | MS.gene80999:CDS | 15.0% |
| !! | AAAAAAAAAAAACCAAGTTC+AGG | + | 50632:8401-8420 | MS.gene80999:intergenic | 20.0% |
| !! | AAAATAGAACATTAAACTCA+CGG | + | 50632:6901-6920 | MS.gene80999:intergenic | 20.0% |
| !! | AAACTAAATATACTTTGTGA+AGG | + | 50632:6577-6596 | MS.gene80999:intergenic | 20.0% |
| !! | AATGTTTCAAAAATCAATAC+TGG | - | 50632:6239-6258 | MS.gene80999:intron | 20.0% |
| !! | ATAGATTTATGAACTATTTG+AGG | - | 50632:8301-8320 | MS.gene80999:intron | 20.0% |
| !!! | AATGTTCTATTTTTAATTCG+TGG | - | 50632:6908-6927 | MS.gene80999:intron | 20.0% |
| !!! | ATTTTTGAAACATTATTCCT+AGG | + | 50632:6233-6252 | MS.gene80999:intergenic | 20.0% |
| !!! | TCATGACATTGAATTTTTAT+AGG | - | 50632:8002-8021 | MS.gene80999:intron | 20.0% |
| !!! | TTCTATTTTTTTTATAGGAG+GGG | - | 50632:6817-6836 | MS.gene80999:CDS | 20.0% |
| ! | AAACTGAAGAAAATACTACT+TGG | + | 50632:8271-8290 | MS.gene80999:intergenic | 25.0% |
| ! | AAATAGAACATTAAACTCAC+GGG | + | 50632:6900-6919 | MS.gene80999:intergenic | 25.0% |
| ! | ACAAATGTATATTTAGACTC+CGG | + | 50632:7704-7723 | MS.gene80999:intergenic | 25.0% |
| ! | ATAACATAAATTATTACCGC+TGG | + | 50632:6119-6138 | MS.gene80999:intergenic | 25.0% |
| ! | ATGATCTTTATGAGAAACAA+GGG | - | 50632:6006-6025 | MS.gene80999:CDS | 25.0% |
| ! | ATGTTAACATGCTATAAGTT+GGG | - | 50632:7320-7339 | MS.gene80999:intron | 25.0% |
| ! | CTTCTAAATGAAGATGTATT+TGG | + | 50632:7577-7596 | MS.gene80999:intergenic | 25.0% |
| ! | CTTGATTATGTTAACAAACT+TGG | - | 50632:8664-8683 | MS.gene80999:intron | 25.0% |
| ! | CTTGTTAGGAATATGTAATT+AGG | + | 50632:8565-8584 | MS.gene80999:intergenic | 25.0% |
| ! | GAATCTTAATATACACATTG+GGG | + | 50632:7172-7191 | MS.gene80999:intergenic | 25.0% |
| ! | GGAATCTTAATATACACATT+GGG | + | 50632:7173-7192 | MS.gene80999:intergenic | 25.0% |
| ! | GGATTATTGAAAAAATGTGA+TGG | + | 50632:8215-8234 | MS.gene80999:intergenic | 25.0% |
| ! | GTAATAATGAAAGACTTGTA+TGG | - | 50632:6165-6184 | MS.gene80999:CDS | 25.0% |
| ! | TAAAATTACATGATCATGCA+GGG | - | 50632:6938-6957 | MS.gene80999:intron | 25.0% |
| ! | TAACATAAATTATTACCGCT+GGG | + | 50632:6118-6137 | MS.gene80999:intergenic | 25.0% |
| ! | TATGTTAACATGCTATAAGT+TGG | - | 50632:7319-7338 | MS.gene80999:intron | 25.0% |
| ! | TCAATTTATGATCAAACTGA+TGG | - | 50632:7047-7066 | MS.gene80999:CDS | 25.0% |
| ! | TGGAATCTTAATATACACAT+TGG | + | 50632:7174-7193 | MS.gene80999:intergenic | 25.0% |
| ! | TGGTATTAGTATATGATTGA+TGG | + | 50632:6427-6446 | MS.gene80999:intergenic | 25.0% |
| ! | TTCAATAATCCATTTGCTTA+TGG | - | 50632:8224-8243 | MS.gene80999:intron | 25.0% |
| !! | AAAATTTCTTTTGGTATAGC+TGG | + | 50632:8056-8075 | MS.gene80999:intergenic | 25.0% |
| !! | AAGTATATTTAGTTTAGCCT+TGG | - | 50632:6582-6601 | MS.gene80999:intron | 25.0% |
| !! | ATAATCAACATAATAATGGG+TGG | - | 50632:7380-7399 | MS.gene80999:intron | 25.0% |
| !! | CTATACCAAAAGAAATTTTC+TGG | - | 50632:8057-8076 | MS.gene80999:intron | 25.0% |
| !! | CTATTTGAGGATTTTCAAAA+AGG | - | 50632:8314-8333 | MS.gene80999:intron | 25.0% |
| !! | GAACATTTTTGACAATTTCA+GGG | + | 50632:8370-8389 | MS.gene80999:intergenic | 25.0% |
| !! | TGAACATTTTTGACAATTTC+AGG | + | 50632:8371-8390 | MS.gene80999:intergenic | 25.0% |
| !!! | TTACAACTCTTAAAAGTGTT+TGG | + | 50632:6282-6301 | MS.gene80999:intergenic | 25.0% |
| AATAAGAGGAGCAACATATA+AGG | + | 50632:8175-8194 | MS.gene80999:intergenic | 30.0% | |
| ACATATTCCTAACAAGTTCA+GGG | - | 50632:8569-8588 | MS.gene80999:intron | 30.0% | |
| ATTTATGATCAAACTGATGG+AGG | - | 50632:7050-7069 | MS.gene80999:CDS | 30.0% | |
| CATGATCTTTATGAGAAACA+AGG | - | 50632:6005-6024 | MS.gene80999:CDS | 30.0% | |
| CATGTTGACACAGTAATATT+TGG | - | 50632:7483-7502 | MS.gene80999:intron | 30.0% | |
| CCATAATAACCATAAGCAAA+TGG | + | 50632:8236-8255 | MS.gene80999:intergenic | 30.0% | |
| CCATTTGCTTATGGTTATTA+TGG | - | 50632:8233-8252 | MS.gene80999:intron | 30.0% | |
| CGATAACTTCCTTAATTGAA+GGG | + | 50632:7214-7233 | MS.gene80999:intergenic | 30.0% | |
| CTAAAATTACATGATCATGC+AGG | - | 50632:6937-6956 | MS.gene80999:intron | 30.0% | |
| GCAATAAAGAAAAGAGTAAG+CGG | + | 50632:7928-7947 | MS.gene80999:intergenic | 30.0% | |
| GGAGTCTAAATATACATTTG+TGG | - | 50632:7703-7722 | MS.gene80999:CDS | 30.0% | |
| TACAGCTTCATATCTTTCAA+GGG | + | 50632:7746-7765 | MS.gene80999:intergenic | 30.0% | |
| TACATATTCCTAACAAGTTC+AGG | - | 50632:8568-8587 | MS.gene80999:intron | 30.0% | |
| TCAAATCCAAACGCAAAAAT+TGG | + | 50632:7950-7969 | MS.gene80999:intergenic | 30.0% | |
| TCACGGGAATATAATACTTA+AGG | + | 50632:6884-6903 | MS.gene80999:intergenic | 30.0% | |
| TCTTTAATGAACATCTCGTT+AGG | - | 50632:8641-8660 | MS.gene80999:intron | 30.0% | |
| TGAAAAAATGTGATGGCTTA+CGG | + | 50632:8208-8227 | MS.gene80999:intergenic | 30.0% | |
| TGTTAACATGCTATAAGTTG+GGG | - | 50632:7321-7340 | MS.gene80999:intron | 30.0% | |
| TGTTGTCAAATTGTAGATGT+AGG | + | 50632:6686-6705 | MS.gene80999:intergenic | 30.0% | |
| TTACAGCTTCATATCTTTCA+AGG | + | 50632:7747-7766 | MS.gene80999:intergenic | 30.0% | |
| TTATATGTTGCTCCTCTTAT+TGG | - | 50632:8174-8193 | MS.gene80999:intron | 30.0% | |
| ! | ATTAAATCCCTGAACTTGTT+AGG | + | 50632:8579-8598 | MS.gene80999:intergenic | 30.0% |
| ! | CGAAGATATTTTTCTATCCT+AGG | - | 50632:6213-6232 | MS.gene80999:intron | 30.0% |
| ! | TGTTGATTATATCAAGGACA+AGG | + | 50632:7370-7389 | MS.gene80999:intergenic | 30.0% |
| ! | TTATTGCCAATTTTTGCGTT+TGG | - | 50632:7941-7960 | MS.gene80999:CDS | 30.0% |
| !!! | TCTATTTTTAATTCGTGGTG+TGG | - | 50632:6913-6932 | MS.gene80999:intron | 30.0% |
| AGCTGTAATTGATGCTTACT+TGG | - | 50632:7759-7778 | MS.gene80999:CDS | 35.0% | |
| ATACTATGCTATCCAGAAGT+TGG | - | 50632:8835-8854 | MS.gene80999:CDS | 35.0% | |
| ATATCTTCGCACAAGTAGAA+CGG | + | 50632:6202-6221 | MS.gene80999:intergenic | 35.0% | |
| ATTAAGGAAGTTATCGCCAA+TGG | - | 50632:7218-7237 | MS.gene80999:intron | 35.0% | |
| ATTAGATGCTCACAAACAGA+TGG | - | 50632:5951-5970 | MS.gene80999:CDS | 35.0% | |
| CAATAAAGTAGAGTAAACCG+TGG | - | 50632:6473-6492 | MS.gene80999:intron | 35.0% | |
| CTAACACCACTTTCAATAAG+AGG | + | 50632:6080-6099 | MS.gene80999:intergenic | 35.0% | |
| CTGATTCCTCTTATTGAAAG+TGG | - | 50632:6071-6090 | MS.gene80999:CDS | 35.0% | |
| CTTCAAGCATTTATCGATCA+CGG | - | 50632:8764-8783 | MS.gene80999:intron | 35.0% | |
| GACAAGATGCTTGAGAAAAT+TGG | - | 50632:7868-7887 | MS.gene80999:CDS | 35.0% | |
| GAGTAATACAACGATTATGC+AGG | + | 50632:6539-6558 | MS.gene80999:intergenic | 35.0% | |
| GCGATAACTTCCTTAATTGA+AGG | + | 50632:7215-7234 | MS.gene80999:intergenic | 35.0% | |
| GGAAGTAAATGAGAAGGTAA+TGG | + | 50632:8717-8736 | MS.gene80999:intergenic | 35.0% | |
| GTAATTGATGCTTACTTGGA+CGG | - | 50632:7763-7782 | MS.gene80999:CDS | 35.0% | |
| GTGATCGATAAATGCTTGAA+GGG | + | 50632:8765-8784 | MS.gene80999:intergenic | 35.0% | |
| GTGCTTACAATGATCAATTC+AGG | - | 50632:6399-6418 | MS.gene80999:intron | 35.0% | |
| GTTATGCTAGTTAGAAGTGA+GGG | - | 50632:7410-7429 | MS.gene80999:intron | 35.0% | |
| GTTCATTTAGATCCTGAACT+TGG | - | 50632:8386-8405 | MS.gene80999:intron | 35.0% | |
| TACTATGCTATCCAGAAGTT+GGG | - | 50632:8836-8855 | MS.gene80999:CDS | 35.0% | |
| TGCAAAATGGCTTCATAAAG+TGG | - | 50632:7139-7158 | MS.gene80999:CDS | 35.0% | |
| TTACCTTCTCATTTACTTCC+AGG | - | 50632:8717-8736 | MS.gene80999:intron | 35.0% | |
| TTGAATGTAACCTCATGTGT+TGG | - | 50632:7514-7533 | MS.gene80999:intron | 35.0% | |
| ! | AACATATAAGGTGTCAGGAT+AGG | + | 50632:8163-8182 | MS.gene80999:intergenic | 35.0% |
| ! | ATTTGGTGAATGACATGTGT+CGG | + | 50632:7560-7579 | MS.gene80999:intergenic | 35.0% |
| ! | CTTATTGAAAGTGGTGTTAG+AGG | - | 50632:6080-6099 | MS.gene80999:CDS | 35.0% |
| ! | GGAAGCTCTAGTTAAAAAAG+GGG | - | 50632:8089-8108 | MS.gene80999:intron | 35.0% |
| ! | GGGAAGCTCTAGTTAAAAAA+GGG | - | 50632:8088-8107 | MS.gene80999:intron | 35.0% |
| ! | TGGGAAGCTCTAGTTAAAAA+AGG | - | 50632:8087-8106 | MS.gene80999:intron | 35.0% |
| ! | TTGGGCCAGAAAATTTCTTT+TGG | + | 50632:8065-8084 | MS.gene80999:intergenic | 35.0% |
| !! | AAAAGAAATTTTCTGGCCCA+AGG | - | 50632:8064-8083 | MS.gene80999:intron | 35.0% |
| !! | GATTACTTTTACCATGTTGC+CGG | - | 50632:7682-7701 | MS.gene80999:CDS | 35.0% |
| AAGACATTGACAGTGCATAC+TGG | - | 50632:6979-6998 | MS.gene80999:intron | 40.0% | |
| AAGAGGAATCAGATCCGTAA+CGG | + | 50632:6063-6082 | MS.gene80999:intergenic | 40.0% | |
| AAGGTCAATGTTGTCAATCC+CGG | - | 50632:6616-6635 | MS.gene80999:intron | 40.0% | |
| AATCGCAATTCTCTGTGATC+CGG | + | 50632:6638-6657 | MS.gene80999:intergenic | 40.0% | |
| AGACATTGACAGTGCATACT+GGG | - | 50632:6980-6999 | MS.gene80999:intron | 40.0% | |
| AGCCTTGGTAAACTACACAA+AGG | - | 50632:6597-6616 | MS.gene80999:intron | 40.0% | |
| ATACTGGGAACTTGTAGTGA+AGG | - | 50632:6995-7014 | MS.gene80999:intron | 40.0% | |
| ATATTTAGACTCCGGCAACA+TGG | + | 50632:7696-7715 | MS.gene80999:intergenic | 40.0% | |
| CACGTTCACACTTATTCCAT+TGG | + | 50632:7237-7256 | MS.gene80999:intergenic | 40.0% | |
| CGTGATCGATAAATGCTTGA+AGG | + | 50632:8766-8785 | MS.gene80999:intergenic | 40.0% | |
| CTACCTGGAAGTAAATGAGA+AGG | + | 50632:8723-8742 | MS.gene80999:intergenic | 40.0% | |
| CTGAAAGATCTGCAATCATG+TGG | + | 50632:6360-6379 | MS.gene80999:intergenic | 40.0% | |
| CTGCAATCATGTGGTATAGA+CGG | + | 50632:6351-6370 | MS.gene80999:intergenic | 40.0% | |
| GAACCATAGAAGCTGCAAAA+TGG | - | 50632:7126-7145 | MS.gene80999:CDS | 40.0% | |
| GAAGGCAAAATCTCTTAAGC+TGG | - | 50632:8951-8970 | MS.gene80999:CDS | 40.0% | |
| GACCTTTGTGTAGTTTACCA+AGG | + | 50632:6602-6621 | MS.gene80999:intergenic | 40.0% | |
| GCATAGAGAGTTTGGAGAAA+CGG | + | 50632:6742-6761 | MS.gene80999:intergenic | 40.0% | |
| GGTTATGCTAGTTAGAAGTG+AGG | - | 50632:7409-7428 | MS.gene80999:intron | 40.0% | |
| GTCAATATCAGTGATGTGTC+TGG | + | 50632:7464-7483 | MS.gene80999:intergenic | 40.0% | |
| GTGTACTAAATCGTGTATCG+CGG | - | 50632:6708-6727 | MS.gene80999:intron | 40.0% | |
| TAAAGTAGAGTAAACCGTGG+AGG | - | 50632:6476-6495 | MS.gene80999:intron | 40.0% | |
| TATCTGGGTCCTTAAAGTCA+GGG | - | 50632:8481-8500 | MS.gene80999:intron | 40.0% | |
| TCATCAAGTCCCTGACTTTA+AGG | + | 50632:8493-8512 | MS.gene80999:intergenic | 40.0% | |
| TCCAATCAATACCCAACTTC+TGG | + | 50632:8850-8869 | MS.gene80999:intergenic | 40.0% | |
| TCTCCAAACTCTCTATGCTA+TGG | - | 50632:6744-6763 | MS.gene80999:CDS | 40.0% | |
| TGCATGTGTCCCTTCAATTA+AGG | - | 50632:7202-7221 | MS.gene80999:intron | 40.0% | |
| TGCATTTGAGTCTATTGTCC+TGG | + | 50632:8798-8817 | MS.gene80999:intergenic | 40.0% | |
| TGCTCACAAACAGATGGAAA+TGG | - | 50632:5957-5976 | MS.gene80999:CDS | 40.0% | |
| TGGTTCACAGCTTGAATTGA+AGG | - | 50632:8877-8896 | MS.gene80999:CDS | 40.0% | |
| ! | GTTCTGTTGAAGTATCTCCT+AGG | - | 50632:7083-7102 | MS.gene80999:CDS | 40.0% |
| ! | TCAAATGCATCTGAAGCTGA+AGG | - | 50632:8809-8828 | MS.gene80999:intron | 40.0% |
| ! | TGAGAAGGTAATGGTAGTTC+AGG | + | 50632:8708-8727 | MS.gene80999:intergenic | 40.0% |
| !! | AAGCCATTTTGCAGCTTCTA+TGG | + | 50632:7132-7151 | MS.gene80999:intergenic | 40.0% |
| !! | CATAATAATGGGTGGTAGCA+AGG | - | 50632:7388-7407 | MS.gene80999:intron | 40.0% |
| !! | GGTATTGATTGGAGCTATGT+TGG | - | 50632:8857-8876 | MS.gene80999:CDS | 40.0% |
| !! | TCCAGAAGTTGGGTATTGAT+TGG | - | 50632:8846-8865 | MS.gene80999:CDS | 40.0% |
| AAAAAGGGGCCAAGAAGCAA+AGG | - | 50632:8103-8122 | MS.gene80999:intron | 45.0% | |
| AATGTGATGGCTTACGGTGT+CGG | + | 50632:8202-8221 | MS.gene80999:intergenic | 45.0% | |
| AGAGGAATCAGATCCGTAAC+GGG | + | 50632:6062-6081 | MS.gene80999:intergenic | 45.0% | |
| ATAGGCAGGATTCTTAACGC+TGG | + | 50632:8145-8164 | MS.gene80999:intergenic | 45.0% | |
| ATCGCAATTCTCTGTGATCC+GGG | + | 50632:6637-6656 | MS.gene80999:intergenic | 45.0% | |
| CGATAAATGCTTGAAGGGCT+TGG | + | 50632:8760-8779 | MS.gene80999:intergenic | 45.0% | |
| CGGCAGAGATTATCATACCA+TGG | + | 50632:6038-6057 | MS.gene80999:intergenic | 45.0% | |
| GAAATGGAGTTCCTGCAAAG+AGG | - | 50632:5973-5992 | MS.gene80999:CDS | 45.0% | |
| GATCAAACTGATGGAGGTGA+TGG | - | 50632:7056-7075 | MS.gene80999:CDS | 45.0% | |
| GTATCTGGGTCCTTAAAGTC+AGG | - | 50632:8480-8499 | MS.gene80999:intron | 45.0% | |
| TAACTAGAGCTTCCCACCTT+GGG | + | 50632:8083-8102 | MS.gene80999:intergenic | 45.0% | |
| TACCTTGCCACGTAGATCAA+GGG | + | 50632:7904-7923 | MS.gene80999:intergenic | 45.0% | |
| TTAACTAGAGCTTCCCACCT+TGG | + | 50632:8084-8103 | MS.gene80999:intergenic | 45.0% | |
| TTACCTTGCCACGTAGATCA+AGG | + | 50632:7905-7924 | MS.gene80999:intergenic | 45.0% | |
| ! | CAACACTTGTGACTCTAGAG+AGG | + | 50632:7813-7832 | MS.gene80999:intergenic | 45.0% |
| ! | GGAGCAACATATAAGGTGTC+AGG | + | 50632:8168-8187 | MS.gene80999:intergenic | 45.0% |
| ! | TATAAGGTGTCAGGATAGGC+AGG | + | 50632:8159-8178 | MS.gene80999:intergenic | 45.0% |
| !! | AGAAATTTTCTGGCCCAAGG+TGG | - | 50632:8067-8086 | MS.gene80999:intron | 45.0% |
| !! | GAAATTTTCTGGCCCAAGGT+GGG | - | 50632:8068-8087 | MS.gene80999:intron | 45.0% |
| !! | ATTAAAAAACAATTATTATA+AGG | - | 50632:8539-8558 | MS.gene80999:CDS | 5.0% |
| !!! | TATAATAATTGTTTTTTAAT+CGG | + | 50632:8539-8558 | MS.gene80999:intergenic | 5.0% |
| AGAAACAAGGGCAGAGTCCA+TGG | - | 50632:6018-6037 | MS.gene80999:CDS | 50.0% | |
| ATGTGATGGCTTACGGTGTC+GGG | + | 50632:8201-8220 | MS.gene80999:intergenic | 50.0% | |
| CAAGAAGCAAAGGCTCCTGT+GGG | - | 50632:8113-8132 | MS.gene80999:intron | 50.0% | |
| CACGTAGATCAAGGGCTTCT+GGG | + | 50632:7896-7915 | MS.gene80999:intergenic | 50.0% | |
| CACTCGACTGACAATGAACG+AGG | + | 50632:7836-7855 | MS.gene80999:intergenic | 50.0% | |
| CTCGTTCATTGTCAGTCGAG+TGG | - | 50632:7834-7853 | MS.gene80999:CDS | 50.0% | |
| CTTAAGCTGGTCAGCAAGTG+AGG | - | 50632:8964-8983 | MS.gene80999:CDS | 50.0% | |
| GAGACATGTCTATGCCTCCA+CGG | + | 50632:6493-6512 | MS.gene80999:intergenic | 50.0% | |
| GCGCCATAGCATAGAGAGTT+TGG | + | 50632:6750-6769 | MS.gene80999:intergenic | 50.0% | |
| TAATCTCTGCCGTCCCGTTA+CGG | - | 50632:6046-6065 | MS.gene80999:CDS | 50.0% | |
| TCAGTATCCTCAGCAAGCCT+AGG | + | 50632:7103-7122 | MS.gene80999:intergenic | 50.0% | |
| TGAAGAACCGTCCTCTTTGC+AGG | + | 50632:5987-6006 | MS.gene80999:intergenic | 50.0% | |
| TGAATCCAGGAGGCTGTCAA+AGG | + | 50632:8923-8942 | MS.gene80999:intergenic | 50.0% | |
| TGATGCTTACTTGGACGGTC+TGG | - | 50632:7768-7787 | MS.gene80999:CDS | 50.0% | |
| TGGAGTTCCTGCAAAGAGGA+CGG | - | 50632:5977-5996 | MS.gene80999:CDS | 50.0% | |
| TGGCGCGATAGAGATGCTAT+TGG | - | 50632:6764-6783 | MS.gene80999:CDS | 50.0% | |
| ! | AATGCTTGAAGGGCTTGGTC+TGG | + | 50632:8755-8774 | MS.gene80999:intergenic | 50.0% |
| ! | GAATCAGATCCGTAACGGGA+CGG | + | 50632:6058-6077 | MS.gene80999:intergenic | 50.0% |
| !! | AGGCTTGCTGAGGATACTGA+AGG | - | 50632:7103-7122 | MS.gene80999:CDS | 50.0% |
| !! | AGTATCTCCTAGGCTTGCTG+AGG | - | 50632:7093-7112 | MS.gene80999:CDS | 50.0% |
| !! | GGCTTGCTGAGGATACTGAA+GGG | - | 50632:7104-7123 | MS.gene80999:CDS | 50.0% |
| AGCCCTTGATCTACGTGGCA+AGG | - | 50632:7899-7918 | MS.gene80999:CDS | 55.0% | |
| CCAAGAAGCAAAGGCTCCTG+TGG | - | 50632:8112-8131 | MS.gene80999:intron | 55.0% | |
| CCACAGGAGCCTTTGCTTCT+TGG | + | 50632:8115-8134 | MS.gene80999:intergenic | 55.0% | |
| CCACGTAGATCAAGGGCTTC+TGG | + | 50632:7897-7916 | MS.gene80999:intergenic | 55.0% | |
| CCAGAAGCCCTTGATCTACG+TGG | - | 50632:7894-7913 | MS.gene80999:CDS | 55.0% | |
| CCTGGATTCACTGCAGGAGA+AGG | - | 50632:8933-8952 | MS.gene80999:CDS | 55.0% | |
| CCTTCTCCTGCAGTGAATCC+AGG | + | 50632:8936-8955 | MS.gene80999:intergenic | 55.0% | |
| CGAAGCGACACCAACACATG+AGG | + | 50632:7527-7546 | MS.gene80999:intergenic | 55.0% | |
| GAAAGCCTTTGACAGCCTCC+TGG | - | 50632:8915-8934 | MS.gene80999:CDS | 55.0% | |
| GCAGGGAACTTGTGCAAGCA+GGG | - | 50632:6955-6974 | MS.gene80999:intron | 55.0% | |
| GTCTGGCATGGTAGACTACC+TGG | + | 50632:8738-8757 | MS.gene80999:intergenic | 55.0% | |
| TCTCCTGCAGTGAATCCAGG+AGG | + | 50632:8933-8952 | MS.gene80999:intergenic | 55.0% | |
| TGCAGGGAACTTGTGCAAGC+AGG | - | 50632:6954-6973 | MS.gene80999:intron | 55.0% | |
| TGCTTACTTGGACGGTCTGG+AGG | - | 50632:7771-7790 | MS.gene80999:CDS | 55.0% | |
| ! | ACGGTGTCGGGTCCAATAAG+AGG | + | 50632:8189-8208 | MS.gene80999:intergenic | 55.0% |
| ! | TAACGCTGGTTGAAGCCCAC+AGG | + | 50632:8131-8150 | MS.gene80999:intergenic | 55.0% |
| ! | TTGAAGGGCTTGGTCTGGCA+TGG | + | 50632:8750-8769 | MS.gene80999:intergenic | 55.0% |
| !! | CTGGTAAGCCAGTGCTGCTT+GGG | + | 50632:8037-8056 | MS.gene80999:intergenic | 55.0% |
| AGCAGTAGCCCAAGCAGCAC+TGG | - | 50632:8026-8045 | MS.gene80999:intron | 60.0% | |
| AGGCGTCACTAGCAACCCAG+CGG | - | 50632:6100-6119 | MS.gene80999:CDS | 60.0% | |
| CAGCCTCCTGGATTCACTGC+AGG | - | 50632:8927-8946 | MS.gene80999:CDS | 60.0% | |
| GGGACACATGCAGCTGTAGC+TGG | + | 50632:7194-7213 | MS.gene80999:intergenic | 60.0% | |
| ! | GCTGGTAAGCCAGTGCTGCT+TGG | + | 50632:8038-8057 | MS.gene80999:intergenic | 60.0% |
| !! | TCGATCACGGTGCTGTAGCC+AGG | - | 50632:8777-8796 | MS.gene80999:intron | 60.0% |
| !! | TGGACGGTCTGGAGGCATCT+GGG | - | 50632:7779-7798 | MS.gene80999:CDS | 60.0% |
| !! | TTGGACGGTCTGGAGGCATC+TGG | - | 50632:7778-7797 | MS.gene80999:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50632 | gene | 5950 | 8991 | 5950 | ID=MS.gene80999 |
| 50632 | mRNA | 5950 | 8991 | 5950 | ID=MS.gene80999.t1;Parent=MS.gene80999 |
| 50632 | exon | 8820 | 8991 | 8820 | ID=MS.gene80999.t1.exon1;Parent=MS.gene80999.t1 |
| 50632 | CDS | 8820 | 8991 | 8820 | ID=cds.MS.gene80999.t1;Parent=MS.gene80999.t1 |
| 50632 | exon | 8521 | 8570 | 8521 | ID=MS.gene80999.t1.exon2;Parent=MS.gene80999.t1 |
| 50632 | CDS | 8521 | 8570 | 8521 | ID=cds.MS.gene80999.t1;Parent=MS.gene80999.t1 |
| 50632 | exon | 7682 | 7982 | 7682 | ID=MS.gene80999.t1.exon3;Parent=MS.gene80999.t1 |
| 50632 | CDS | 7682 | 7982 | 7682 | ID=cds.MS.gene80999.t1;Parent=MS.gene80999.t1 |
| 50632 | exon | 7029 | 7208 | 7029 | ID=MS.gene80999.t1.exon4;Parent=MS.gene80999.t1 |
| 50632 | CDS | 7029 | 7208 | 7029 | ID=cds.MS.gene80999.t1;Parent=MS.gene80999.t1 |
| 50632 | exon | 6735 | 6917 | 6735 | ID=MS.gene80999.t1.exon5;Parent=MS.gene80999.t1 |
| 50632 | CDS | 6735 | 6917 | 6735 | ID=cds.MS.gene80999.t1;Parent=MS.gene80999.t1 |
| 50632 | exon | 5950 | 6198 | 5950 | ID=MS.gene80999.t1.exon6;Parent=MS.gene80999.t1 |
| 50632 | CDS | 5950 | 6198 | 5950 | ID=cds.MS.gene80999.t1;Parent=MS.gene80999.t1 |
| Gene Sequence |
| Protein sequence |
