AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052290.t1 MTR_4g075710 94.373 391 18 2 1 387 1 391 0.0 731
MS.gene052290.t1 MTR_3g009280 40.171 117 67 2 112 228 218 331 9.21e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052290.t1 AT2G47450 68.896 299 84 4 72 369 83 373 3.22e-146 419

Find 144 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCATCTTCAATGGTTT+TGG 0.110155 4.2:+33270877 None:intergenic
CTTCTTGTTGTTGTTGGTTT+TGG 0.120489 4.2:+33270912 None:intergenic
CCACGATCGTCGCTGATTTC+AGG 0.144369 4.2:+33270428 None:intergenic
AGGCGAGAATTTGGAGTATT+TGG 0.173490 4.2:-33270243 MS.gene052290:CDS
GAGAGGGAAAGGCGAGAATT+TGG 0.176713 4.2:-33270252 MS.gene052290:CDS
CGGTGGTTGGTCGGAGAGTT+GGG 0.256269 4.2:-33270115 MS.gene052290:CDS
GAGGTTTGTGGCGGAGGATT+TGG 0.282241 4.2:-33270180 MS.gene052290:CDS
TGCTGAGGTAGAGGAGATAT+TGG 0.291945 4.2:-33270279 MS.gene052290:CDS
AAGTGCTAATGAGTGGATTA+AGG 0.294879 4.2:-33270204 MS.gene052290:CDS
TTTGGGAGATAGAGAGTGTT+TGG 0.299844 4.2:+33271021 None:intergenic
GAGAAATTGAAATGGGTGTT+TGG 0.304926 4.2:+33271003 None:intergenic
GCTCAACCTGGTAATGATAA+TGG 0.316615 4.2:-33269975 MS.gene052290:CDS
CTCAACCTGGTAATGATAAT+GGG 0.336135 4.2:-33269974 MS.gene052290:CDS
TTGGGTTGCGGCGGTGATAG+TGG 0.340095 4.2:+33270931 None:intergenic
ATTTGGAGTATTTGGTGAAA+TGG 0.345848 4.2:-33270235 MS.gene052290:CDS
TGGGGTTAGAAGGTGTGGTT+AGG 0.347029 4.2:-33270328 MS.gene052290:CDS
TTTGTTCTTCTTGTTGTTGT+TGG 0.347255 4.2:+33270906 None:intergenic
TCAGAATCAACATTCTCTTC+AGG 0.349082 4.2:+33270032 None:intergenic
TAAGGGGAGGTTTGTGGCGG+AGG 0.350973 4.2:-33270186 MS.gene052290:CDS
GGTCGGAGAGTTGGGGATGA+TGG 0.358476 4.2:-33270107 MS.gene052290:CDS
GAGTGAGGGATTGGTGGTGG+TGG 0.367431 4.2:+33270978 None:intergenic
AGAAATTGAAATGGGTGTTT+GGG 0.369320 4.2:+33271004 None:intergenic
TTTGGTGAAATGGATTGATT+TGG 0.374112 4.2:-33270072 MS.gene052290:CDS
TTGGGTTTGAAGTGAGAAAT+TGG 0.374373 4.2:+33271040 None:intergenic
TGGGGAGTTTGGTGGGTTTG+TGG 0.385286 4.2:+33270951 None:intergenic
TGGGTTGCGGCGGTGATAGT+GGG 0.391227 4.2:+33270932 None:intergenic
GGCGGTGATAGTGGGGAGTT+TGG 0.394529 4.2:+33270940 None:intergenic
CTTCTCTTTGTCGCTGGCCT+CGG 0.397377 4.2:-33270596 MS.gene052290:CDS
GTGGATTAAGGGGAGGTTTG+TGG 0.404919 4.2:-33270192 MS.gene052290:CDS
AATTGCATTGGGTTACCCTT+TGG 0.405398 4.2:+33270362 None:intergenic
TTGGGAGATAGAGAGTGTTT+GGG 0.411160 4.2:+33271022 None:intergenic
GCGGTGGTTGGTCGGAGAGT+TGG 0.411640 4.2:-33270116 MS.gene052290:CDS
CGGGGACCCAGGATGGTTCA+TGG 0.416520 4.2:+33270768 None:intergenic
GTGATAGTGGGGAGTTTGGT+GGG 0.419226 4.2:+33270944 None:intergenic
TTCTTCTACCGAATTGCATT+GGG 0.419690 4.2:+33270351 None:intergenic
ATGCAATTCGGTAGAAGAAT+GGG 0.429028 4.2:-33270347 MS.gene052290:CDS
CCACCAGGGAGTTTCGTATT+CGG 0.429202 4.2:+33270718 None:intergenic
GTAGGATTCTTCATCTTCAA+TGG 0.429799 4.2:+33270871 None:intergenic
GTCTAAATTAGCGCCGGCTT+CGG 0.436997 4.2:+33270547 None:intergenic
GGTAGAAGAATGGGGTTAGA+AGG 0.440882 4.2:-33270338 MS.gene052290:CDS
TGTGGCGGAGAGTGAGGGAT+TGG 0.446239 4.2:+33270969 None:intergenic
TTCTACGGTTGGTTTGAGTC+AGG 0.446921 4.2:-33269949 MS.gene052290:CDS
TTGGTGAGGGATTATGAAGC+TGG 0.448197 4.2:-33270161 MS.gene052290:CDS
AGTGCTAATGAGTGGATTAA+GGG 0.448382 4.2:-33270203 MS.gene052290:CDS
AGGAGATATTGGAGAAGAGA+GGG 0.448945 4.2:-33270268 MS.gene052290:CDS
TGAATATGCGGTGGCGGAAG+CGG 0.449825 4.2:-33270135 MS.gene052290:CDS
ATTCTTCTACCGAATTGCAT+TGG 0.451311 4.2:+33270350 None:intergenic
TGTTGATTCTGAACTTGTTA+AGG 0.454695 4.2:-33270021 MS.gene052290:CDS
TCGGCGCTGCACATGGCAGC+TGG 0.455637 4.2:-33270500 MS.gene052290:CDS
AGTGAGAAATTGGTTTGGTA+AGG 0.461043 4.2:+33271050 None:intergenic
CGATAATAACGGTGGTCTAT+CGG 0.465232 4.2:-33270519 MS.gene052290:CDS
GTCGGAGAGTTGGGGATGAT+GGG 0.465281 4.2:-33270106 MS.gene052290:CDS
TGGGTTTGTGGCGGAGAGTG+AGG 0.465303 4.2:+33270963 None:intergenic
GAGGAGATATTGGAGAAGAG+AGG 0.466614 4.2:-33270269 MS.gene052290:CDS
CGCGGTAATCATCGGCTTCG+AGG 0.478617 4.2:+33270654 None:intergenic
GGGGTTAGAAGGTGTGGTTA+GGG 0.479574 4.2:-33270327 MS.gene052290:CDS
GGAGAGTGAGGGATTGGTGG+TGG 0.480432 4.2:+33270975 None:intergenic
TTGATTTGGATGAACCTACT+TGG 0.481949 4.2:-33270058 MS.gene052290:CDS
GGCGGAGAGTGAGGGATTGG+TGG 0.482139 4.2:+33270972 None:intergenic
GGGTTTGTGGCGGAGAGTGA+GGG 0.484149 4.2:+33270964 None:intergenic
AAGACGGCCATGAACCATCC+TGG 0.484365 4.2:-33270775 MS.gene052290:CDS
TGGCGGAAGCGGTGGTTGGT+CGG 0.486825 4.2:-33270124 MS.gene052290:CDS
TGGTGGGAGAGAAATTGAAA+TGG 0.490387 4.2:+33270995 None:intergenic
AAGGGTAACCCAATGCAATT+CGG 0.495249 4.2:-33270359 MS.gene052290:CDS
ACGGTTGGTTTGAGTCAGGA+TGG 0.495715 4.2:-33269945 MS.gene052290:CDS
GGAGTTTGGTGGGTTTGTGG+CGG 0.497643 4.2:+33270954 None:intergenic
ACCGCACTTCTCTTTGTCGC+TGG 0.497670 4.2:-33270602 MS.gene052290:CDS
AGTGAGGGATTGGTGGTGGT+GGG 0.502593 4.2:+33270979 None:intergenic
GATAATGGGGTTTCTACGGT+TGG 0.503888 4.2:-33269960 MS.gene052290:CDS
ATTTACGTCGCGGTAATCAT+CGG 0.507248 4.2:+33270646 None:intergenic
GCATGGAGTATCTCATTGAA+TGG 0.512323 4.2:-33270799 MS.gene052290:CDS
TAATGATAATGGGGTTTCTA+CGG 0.516540 4.2:-33269964 MS.gene052290:CDS
GGTAAGGAACAAAGCTTCCA+TGG 0.516721 4.2:+33271066 None:intergenic
AATGCAATTCGGTAGAAGAA+TGG 0.520204 4.2:-33270348 MS.gene052290:CDS
TGGTCTATCGGCGCTGCACA+TGG 0.520759 4.2:-33270507 MS.gene052290:CDS
GTTTGAATATGCTGAGGTAG+AGG 0.521381 4.2:-33270288 MS.gene052290:CDS
AATGAAGTCGGCGGGGACCC+AGG 0.522078 4.2:+33270757 None:intergenic
GGTGGGAGAGAAATTGAAAT+GGG 0.522870 4.2:+33270996 None:intergenic
TTAGACCACCGCGATAATAA+CGG 0.523480 4.2:-33270530 MS.gene052290:CDS
GGTGATAGTGGGGAGTTTGG+TGG 0.531145 4.2:+33270943 None:intergenic
TGATTTGGATGAACCTACTT+GGG 0.531703 4.2:-33270057 MS.gene052290:CDS
TCTTTCGCAATGAAGTCGGC+GGG 0.535794 4.2:+33270749 None:intergenic
TTTGAAGTGAGAAATTGGTT+TGG 0.535825 4.2:+33271045 None:intergenic
AATCATCGGAAGCAAAGCCT+TGG 0.537362 4.2:-33270834 MS.gene052290:CDS
AAGAATGGGGTTAGAAGGTG+TGG 0.541162 4.2:-33270333 MS.gene052290:CDS
TTATTAAAAGCGACACCAAA+GGG 0.543433 4.2:-33270377 MS.gene052290:CDS
TTGAAGATGAAGAATCCTAC+GGG 0.547644 4.2:-33270868 MS.gene052290:CDS
TGTGGCGGAGGATTTGGTGA+GGG 0.548276 4.2:-33270174 MS.gene052290:CDS
ATATTGGAGAAGAGAGGGAA+AGG 0.548437 4.2:-33270263 MS.gene052290:CDS
AAGTCGGCGGGGACCCAGGA+TGG 0.551120 4.2:+33270761 None:intergenic
GCGGTGGCGGAAGCGGTGGT+TGG 0.555956 4.2:-33270128 MS.gene052290:CDS
GCAAAATTGCTACTCGAGCT+CGG 0.556305 4.2:-33270458 MS.gene052290:CDS
CATGCCGGTGGAATCTTCCA+AGG 0.558306 4.2:+33270817 None:intergenic
CGATCGTGGAAGAACAGCGT+TGG 0.562728 4.2:-33270414 MS.gene052290:CDS
TGGTGAGGGATTATGAAGCT+GGG 0.564059 4.2:-33270160 MS.gene052290:CDS
GTTAAGCTCTTAGCCGAAGC+CGG 0.567177 4.2:-33270560 MS.gene052290:CDS
GAAACCCCATTATCATTACC+AGG 0.569354 4.2:+33269969 None:intergenic
TAACGCATGGCTCTGAGCCG+AGG 0.571678 4.2:+33270579 None:intergenic
AGACGGCCATGAACCATCCT+GGG 0.573016 4.2:-33270774 MS.gene052290:CDS
AGTAATAAACAAGCTCAACC+TGG 0.574111 4.2:-33269987 MS.gene052290:CDS
CCTGAAATCAGCGACGATCG+TGG 0.576549 4.2:-33270428 MS.gene052290:CDS
TTCTCTTCAGGCTCCCAAGT+AGG 0.577107 4.2:+33270044 None:intergenic
TATTTGGTGAAATGGAAAGA+TGG 0.577745 4.2:-33270227 MS.gene052290:CDS
GGGTTGCGGCGGTGATAGTG+GGG 0.578279 4.2:+33270933 None:intergenic
CGGTTGGTTTGAGTCAGGAT+GGG 0.578683 4.2:-33269944 MS.gene052290:CDS
GTTATTAAAAGCGACACCAA+AGG 0.579363 4.2:-33270378 MS.gene052290:CDS
GGTGGTTGGTCGGAGAGTTG+GGG 0.579680 4.2:-33270114 MS.gene052290:CDS
TTGTGGCGGAGGATTTGGTG+AGG 0.581295 4.2:-33270175 MS.gene052290:CDS
TGGGCTTGAATATGCGGTGG+CGG 0.583778 4.2:-33270141 MS.gene052290:CDS
GATTAAGGGGAGGTTTGTGG+CGG 0.586684 4.2:-33270189 MS.gene052290:CDS
TCGCCGAATACGAAACTCCC+TGG 0.587405 4.2:-33270721 MS.gene052290:CDS
TTTCTAGCGGCGGTCCACCA+GGG 0.598996 4.2:+33270704 None:intergenic
ATTGAAGATGAAGAATCCTA+CGG 0.603300 4.2:-33270869 MS.gene052290:CDS
GACGTCTTTCGCAATGAAGT+CGG 0.604930 4.2:+33270745 None:intergenic
GCAGCTGGATATGTAAGACC+TGG 0.608072 4.2:-33270485 MS.gene052290:CDS
TTCAATGAGATACTCCATGC+CGG 0.612016 4.2:+33270802 None:intergenic
GTGCTAATGAGTGGATTAAG+GGG 0.614109 4.2:-33270202 MS.gene052290:CDS
AAAGCCTTGGAAGATTCCAC+CGG 0.616621 4.2:-33270821 MS.gene052290:CDS
TATCTCATTGAATGGAAAGA+CGG 0.616967 4.2:-33270791 MS.gene052290:CDS
GAGAAGTGCGGTTCTACCGT+CGG 0.619719 4.2:+33270613 None:intergenic
GAACAGCGTTGGATTTAGCG+AGG 0.620558 4.2:-33270403 MS.gene052290:CDS
GTCTTTCGCAATGAAGTCGG+CGG 0.623613 4.2:+33270748 None:intergenic
AACAGCGTTGGATTTAGCGA+GGG 0.625456 4.2:-33270402 MS.gene052290:CDS
CTTGGAAGATTCCACCGGCA+TGG 0.625931 4.2:-33270816 MS.gene052290:CDS
ATATGCGGTGGCGGAAGCGG+TGG 0.636649 4.2:-33270132 MS.gene052290:CDS
TCAACCTGGTAATGATAATG+GGG 0.640024 4.2:-33269973 MS.gene052290:CDS
CTAATGAGTGGATTAAGGGG+AGG 0.641319 4.2:-33270199 MS.gene052290:CDS
TCGGCTAAGAGCTTAACGCA+TGG 0.645919 4.2:+33270566 None:intergenic
TGAAGCTGGGCTTGAATATG+CGG 0.647086 4.2:-33270147 MS.gene052290:CDS
TGCAATTCGGTAGAAGAATG+GGG 0.674064 4.2:-33270346 MS.gene052290:CDS
AAGATGGAAGTGCTAATGAG+TGG 0.675098 4.2:-33270211 MS.gene052290:CDS
AATGAGATACTCCATGCCGG+TGG 0.686619 4.2:+33270805 None:intergenic
GCGGTGGTCTAAATTAGCGC+CGG 0.687716 4.2:+33270541 None:intergenic
CTTTCGCAATGAAGTCGGCG+GGG 0.694857 4.2:+33270750 None:intergenic
AGCTGGGCTTGAATATGCGG+TGG 0.699208 4.2:-33270144 MS.gene052290:CDS
GACCACCGTTATTATCGCGG+TGG 0.709301 4.2:+33270525 None:intergenic
CCGAATACGAAACTCCCTGG+TGG 0.716377 4.2:-33270718 MS.gene052290:CDS
TGCAGTGTTTGAATATGCTG+AGG 0.722562 4.2:-33270294 MS.gene052290:CDS
AGTCTACTGCATTTACGTCG+CGG 0.730977 4.2:+33270636 None:intergenic
GCCAGCGACAAAGAGAAGTG+CGG 0.733493 4.2:+33270601 None:intergenic
GTAAATGCAGTAGACTCCGA+CGG 0.737539 4.2:-33270629 MS.gene052290:CDS
GACCACCGCGATAATAACGG+TGG 0.739947 4.2:-33270527 MS.gene052290:CDS
ATAGACCACCGTTATTATCG+CGG 0.757054 4.2:+33270522 None:intergenic
TGAAGATGAAGAATCCTACG+GGG 0.810496 4.2:-33270867 MS.gene052290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AGAAATTGAAATGGGTGTTT+GGG + chr4.2:33269983-33270002 None:intergenic 30.0%
ATTGAAGATGAAGAATCCTA+CGG - chr4.2:33270115-33270134 MS.gene052290:CDS 30.0%
TATCTCATTGAATGGAAAGA+CGG - chr4.2:33270193-33270212 MS.gene052290:CDS 30.0%
TTATTAAAAGCGACACCAAA+GGG - chr4.2:33270607-33270626 MS.gene052290:CDS 30.0%
! ATTTGGAGTATTTGGTGAAA+TGG - chr4.2:33270749-33270768 MS.gene052290:CDS 30.0%
! TATTTGGTGAAATGGAAAGA+TGG - chr4.2:33270757-33270776 MS.gene052290:CDS 30.0%
! TCTTCATCTTCAATGGTTTT+GGG + chr4.2:33270109-33270128 None:intergenic 30.0%
! TTCTTCATCTTCAATGGTTT+TGG + chr4.2:33270110-33270129 None:intergenic 30.0%
! TTTGAAGTGAGAAATTGGTT+TGG + chr4.2:33269942-33269961 None:intergenic 30.0%
!! TAATGATAATGGGGTTTCTA+CGG - chr4.2:33271020-33271039 MS.gene052290:CDS 30.0%
!! TGTTGATTCTGAACTTGTTA+AGG - chr4.2:33270963-33270982 MS.gene052290:CDS 30.0%
!! TTTGGTGAAATGGATTGATT+TGG - chr4.2:33270912-33270931 MS.gene052290:CDS 30.0%
!! TTTGTTCTTCTTGTTGTTGT+TGG + chr4.2:33270081-33270100 None:intergenic 30.0%
!!! AGTATGAGTTTTTGGTGAAA+TGG - chr4.2:33270902-33270921 MS.gene052290:CDS 30.0%
!!! TTCTTGTTGTTGTTGGTTTT+GGG + chr4.2:33270074-33270093 None:intergenic 30.0%
AATGCAATTCGGTAGAAGAA+TGG - chr4.2:33270636-33270655 MS.gene052290:CDS 35.0%
AGTAATAAACAAGCTCAACC+TGG - chr4.2:33270997-33271016 MS.gene052290:CDS 35.0%
ATGCAATTCGGTAGAAGAAT+GGG - chr4.2:33270637-33270656 MS.gene052290:CDS 35.0%
ATTCTTCTACCGAATTGCAT+TGG + chr4.2:33270637-33270656 None:intergenic 35.0%
GAGAAATTGAAATGGGTGTT+TGG + chr4.2:33269984-33270003 None:intergenic 35.0%
GGGGAAGTCAAAAAAATCAT+CGG - chr4.2:33270136-33270155 MS.gene052290:CDS 35.0%
GTAGGATTCTTCATCTTCAA+TGG + chr4.2:33270116-33270135 None:intergenic 35.0%
GTTATTAAAAGCGACACCAA+AGG - chr4.2:33270606-33270625 MS.gene052290:CDS 35.0%
TCAGAATCAACATTCTCTTC+AGG + chr4.2:33270955-33270974 None:intergenic 35.0%
TTCTTCTACCGAATTGCATT+GGG + chr4.2:33270636-33270655 None:intergenic 35.0%
TTGAAGATGAAGAATCCTAC+GGG - chr4.2:33270116-33270135 MS.gene052290:CDS 35.0%
! ATTTTCGTCGGATTTTCTAG+CGG + chr4.2:33270296-33270315 None:intergenic 35.0%
! CTCAACCTGGTAATGATAAT+GGG - chr4.2:33271010-33271029 MS.gene052290:CDS 35.0%
! TCAACCTGGTAATGATAATG+GGG - chr4.2:33271011-33271030 MS.gene052290:CDS 35.0%
! TGATTTGGATGAACCTACTT+GGG - chr4.2:33270927-33270946 MS.gene052290:CDS 35.0%
! TTGGGTTTGAAGTGAGAAAT+TGG + chr4.2:33269947-33269966 None:intergenic 35.0%
!! AAGTGCTAATGAGTGGATTA+AGG - chr4.2:33270780-33270799 MS.gene052290:CDS 35.0%
!! AGTGAGAAATTGGTTTGGTA+AGG + chr4.2:33269937-33269956 None:intergenic 35.0%
!! AGTGCTAATGAGTGGATTAA+GGG - chr4.2:33270781-33270800 MS.gene052290:CDS 35.0%
!! TGATGGGAAGTATGAGTTTT+TGG - chr4.2:33270894-33270913 MS.gene052290:CDS 35.0%
!! TTGATTTGGATGAACCTACT+TGG - chr4.2:33270926-33270945 MS.gene052290:CDS 35.0%
!!! CTTCTTGTTGTTGTTGGTTT+TGG + chr4.2:33270075-33270094 None:intergenic 35.0%
AAGGGTAACCCAATGCAATT+CGG - chr4.2:33270625-33270644 MS.gene052290:CDS 40.0%
AATTGCATTGGGTTACCCTT+TGG + chr4.2:33270625-33270644 None:intergenic 40.0%
AGGAGATATTGGAGAAGAGA+GGG - chr4.2:33270716-33270735 MS.gene052290:CDS 40.0%
ATAGACCACCGTTATTATCG+CGG + chr4.2:33270465-33270484 None:intergenic 40.0%
ATATTGGAGAAGAGAGGGAA+AGG - chr4.2:33270721-33270740 MS.gene052290:CDS 40.0%
ATTTACGTCGCGGTAATCAT+CGG + chr4.2:33270341-33270360 None:intergenic 40.0%
CGATAATAACGGTGGTCTAT+CGG - chr4.2:33270465-33270484 MS.gene052290:CDS 40.0%
GAAACCCCATTATCATTACC+AGG + chr4.2:33271018-33271037 None:intergenic 40.0%
GGTGGGAGAGAAATTGAAAT+GGG + chr4.2:33269991-33270010 None:intergenic 40.0%
GTTTGAATATGCTGAGGTAG+AGG - chr4.2:33270696-33270715 MS.gene052290:CDS 40.0%
TGAAGATGAAGAATCCTACG+GGG - chr4.2:33270117-33270136 MS.gene052290:CDS 40.0%
TGCAATTCGGTAGAAGAATG+GGG - chr4.2:33270638-33270657 MS.gene052290:CDS 40.0%
TGCAGTGTTTGAATATGCTG+AGG - chr4.2:33270690-33270709 MS.gene052290:CDS 40.0%
TGGTGGGAGAGAAATTGAAA+TGG + chr4.2:33269992-33270011 None:intergenic 40.0%
TTAGACCACCGCGATAATAA+CGG - chr4.2:33270454-33270473 MS.gene052290:CDS 40.0%
TTCAATGAGATACTCCATGC+CGG + chr4.2:33270185-33270204 None:intergenic 40.0%
! AGGCGAGAATTTGGAGTATT+TGG - chr4.2:33270741-33270760 MS.gene052290:CDS 40.0%
! AGTAGCAATTTTGCTACTCC+AGG + chr4.2:33270520-33270539 None:intergenic 40.0%
! GCATGGAGTATCTCATTGAA+TGG - chr4.2:33270185-33270204 MS.gene052290:CDS 40.0%
! GCTCAACCTGGTAATGATAA+TGG - chr4.2:33271009-33271028 MS.gene052290:CDS 40.0%
!! AAGATGGAAGTGCTAATGAG+TGG - chr4.2:33270773-33270792 MS.gene052290:CDS 40.0%
!! GTGCTAATGAGTGGATTAAG+GGG - chr4.2:33270782-33270801 MS.gene052290:CDS 40.0%
!! TTGGGAGATAGAGAGTGTTT+GGG + chr4.2:33269965-33269984 None:intergenic 40.0%
!! TTTGGGAGATAGAGAGTGTT+TGG + chr4.2:33269966-33269985 None:intergenic 40.0%
!!! ATCTTCAATGGTTTTGGGTG+TGG + chr4.2:33270104-33270123 None:intergenic 40.0%
!!! GATTTTTTTGACTTCCCCGT+AGG + chr4.2:33270134-33270153 None:intergenic 40.0%
!!! TGTTTTGAGGGCATTTTCGT+CGG + chr4.2:33270308-33270327 None:intergenic 40.0%
!!! TTGTTGTTGGTTTTGGGTTG+CGG + chr4.2:33270068-33270087 None:intergenic 40.0%
AAAGCCTTGGAAGATTCCAC+CGG - chr4.2:33270163-33270182 MS.gene052290:CDS 45.0%
AAGAATGGGGTTAGAAGGTG+TGG - chr4.2:33270651-33270670 MS.gene052290:CDS 45.0%
AATCATCGGAAGCAAAGCCT+TGG - chr4.2:33270150-33270169 MS.gene052290:CDS 45.0%
AGTCTACTGCATTTACGTCG+CGG + chr4.2:33270351-33270370 None:intergenic 45.0%
GACGTCTTTCGCAATGAAGT+CGG + chr4.2:33270242-33270261 None:intergenic 45.0%
GAGGAGATATTGGAGAAGAG+AGG - chr4.2:33270715-33270734 MS.gene052290:CDS 45.0%
GCAAAATTGCTACTCGAGCT+CGG - chr4.2:33270526-33270545 MS.gene052290:CDS 45.0%
GGTAGAAGAATGGGGTTAGA+AGG - chr4.2:33270646-33270665 MS.gene052290:CDS 45.0%
GTAAATGCAGTAGACTCCGA+CGG - chr4.2:33270355-33270374 MS.gene052290:CDS 45.0%
TGAAGCTGGGCTTGAATATG+CGG - chr4.2:33270837-33270856 MS.gene052290:CDS 45.0%
TGCTGAGGTAGAGGAGATAT+TGG - chr4.2:33270705-33270724 MS.gene052290:CDS 45.0%
TGGTGAGGGATTATGAAGCT+GGG - chr4.2:33270824-33270843 MS.gene052290:CDS 45.0%
TTGGTGAGGGATTATGAAGC+TGG - chr4.2:33270823-33270842 MS.gene052290:CDS 45.0%
! AACAGCGTTGGATTTAGCGA+GGG - chr4.2:33270582-33270601 MS.gene052290:CDS 45.0%
!! CTAATGAGTGGATTAAGGGG+AGG - chr4.2:33270785-33270804 MS.gene052290:CDS 45.0%
!! GATAATGGGGTTTCTACGGT+TGG - chr4.2:33271024-33271043 MS.gene052290:CDS 45.0%
!! TTCTACGGTTGGTTTGAGTC+AGG - chr4.2:33271035-33271054 MS.gene052290:CDS 45.0%
!!! GGCTTCGAGGATTGTTTTGA+GGG + chr4.2:33270320-33270339 None:intergenic 45.0%
!!! GGTGTGGTTAGGGTTTTAGA+AGG - chr4.2:33270667-33270686 MS.gene052290:CDS 45.0%
AATGAGATACTCCATGCCGG+TGG + chr4.2:33270182-33270201 None:intergenic 50.0%
CCACCAGGGAGTTTCGTATT+CGG + chr4.2:33270269-33270288 None:intergenic 50.0%
GAGAGGGAAAGGCGAGAATT+TGG - chr4.2:33270732-33270751 MS.gene052290:CDS 50.0%
GATTAAGGGGAGGTTTGTGG+CGG - chr4.2:33270795-33270814 MS.gene052290:CDS 50.0%
GCAGCTGGATATGTAAGACC+TGG - chr4.2:33270499-33270518 MS.gene052290:CDS 50.0%
GTCTTTCGCAATGAAGTCGG+CGG + chr4.2:33270239-33270258 None:intergenic 50.0%
GTTAAGCTCTTAGCCGAAGC+CGG - chr4.2:33270424-33270443 MS.gene052290:CDS 50.0%
TCGGCTAAGAGCTTAACGCA+TGG + chr4.2:33270421-33270440 None:intergenic 50.0%
TCTTTCGCAATGAAGTCGGC+GGG + chr4.2:33270238-33270257 None:intergenic 50.0%
TTCTCTTCAGGCTCCCAAGT+AGG + chr4.2:33270943-33270962 None:intergenic 50.0%
! GAACAGCGTTGGATTTAGCG+AGG - chr4.2:33270581-33270600 MS.gene052290:CDS 50.0%
! GGGGTTAGAAGGTGTGGTTA+GGG - chr4.2:33270657-33270676 MS.gene052290:CDS 50.0%
! GTGGATTAAGGGGAGGTTTG+TGG - chr4.2:33270792-33270811 MS.gene052290:CDS 50.0%
! TGGGGTTAGAAGGTGTGGTT+AGG - chr4.2:33270656-33270675 MS.gene052290:CDS 50.0%
!! ACGGTTGGTTTGAGTCAGGA+TGG - chr4.2:33271039-33271058 MS.gene052290:CDS 50.0%
!! CGGCTTCGAGGATTGTTTTG+AGG + chr4.2:33270321-33270340 None:intergenic 50.0%
!! CGGTTGGTTTGAGTCAGGAT+GGG - chr4.2:33271040-33271059 MS.gene052290:CDS 50.0%
!! GTCTAAATTAGCGCCGGCTT+CGG + chr4.2:33270440-33270459 None:intergenic 50.0%
!! GTGATAGTGGGGAGTTTGGT+GGG + chr4.2:33270043-33270062 None:intergenic 50.0%
!! TTCGTCGGATTTTCTAGCGG+CGG + chr4.2:33270293-33270312 None:intergenic 50.0%
!!! TTGTTGGTTTTGGGTTGCGG+CGG + chr4.2:33270065-33270084 None:intergenic 50.0%
AAGACGGCCATGAACCATCC+TGG - chr4.2:33270209-33270228 MS.gene052290:CDS 55.0%
ACCGCACTTCTCTTTGTCGC+TGG - chr4.2:33270382-33270401 MS.gene052290:CDS 55.0%
AGACGGCCATGAACCATCCT+GGG - chr4.2:33270210-33270229 MS.gene052290:CDS 55.0%
AGCTGGGCTTGAATATGCGG+TGG - chr4.2:33270840-33270859 MS.gene052290:CDS 55.0%
CATGCCGGTGGAATCTTCCA+AGG + chr4.2:33270170-33270189 None:intergenic 55.0%
CCGAATACGAAACTCCCTGG+TGG - chr4.2:33270266-33270285 MS.gene052290:CDS 55.0%
CCTGAAATCAGCGACGATCG+TGG - chr4.2:33270556-33270575 MS.gene052290:CDS 55.0%
CGATCGTGGAAGAACAGCGT+TGG - chr4.2:33270570-33270589 MS.gene052290:CDS 55.0%
CTTGGAAGATTCCACCGGCA+TGG - chr4.2:33270168-33270187 MS.gene052290:CDS 55.0%
CTTTCGCAATGAAGTCGGCG+GGG + chr4.2:33270237-33270256 None:intergenic 55.0%
GACCACCGCGATAATAACGG+TGG - chr4.2:33270457-33270476 MS.gene052290:CDS 55.0%
GACCACCGTTATTATCGCGG+TGG + chr4.2:33270462-33270481 None:intergenic 55.0%
GCCAGCGACAAAGAGAAGTG+CGG + chr4.2:33270386-33270405 None:intergenic 55.0%
GCGGTGGTCTAAATTAGCGC+CGG + chr4.2:33270446-33270465 None:intergenic 55.0%
GTCGGAGAGTTGGGGATGAT+GGG - chr4.2:33270878-33270897 MS.gene052290:CDS 55.0%
TCGCCGAATACGAAACTCCC+TGG - chr4.2:33270263-33270282 MS.gene052290:CDS 55.0%
TGGGCTTGAATATGCGGTGG+CGG - chr4.2:33270843-33270862 MS.gene052290:CDS 55.0%
! CTTCTCTTTGTCGCTGGCCT+CGG - chr4.2:33270388-33270407 MS.gene052290:CDS 55.0%
! GAGAAGTGCGGTTCTACCGT+CGG + chr4.2:33270374-33270393 None:intergenic 55.0%
! GAGGTTTGTGGCGGAGGATT+TGG - chr4.2:33270804-33270823 MS.gene052290:CDS 55.0%
!! AGTGAGGGATTGGTGGTGGT+GGG + chr4.2:33270008-33270027 None:intergenic 55.0%
!! CCACGATCGTCGCTGATTTC+AGG + chr4.2:33270559-33270578 None:intergenic 55.0%
!! GGAGTTTGGTGGGTTTGTGG+CGG + chr4.2:33270033-33270052 None:intergenic 55.0%
!! GGTGATAGTGGGGAGTTTGG+TGG + chr4.2:33270044-33270063 None:intergenic 55.0%
!! TGAATATGCGGTGGCGGAAG+CGG - chr4.2:33270849-33270868 MS.gene052290:CDS 55.0%
!! TGGGGAGTTTGGTGGGTTTG+TGG + chr4.2:33270036-33270055 None:intergenic 55.0%
!! TGTGGCGGAGGATTTGGTGA+GGG - chr4.2:33270810-33270829 MS.gene052290:CDS 55.0%
!! TTGTGGCGGAGGATTTGGTG+AGG - chr4.2:33270809-33270828 MS.gene052290:CDS 55.0%
GGTCGGAGAGTTGGGGATGA+TGG - chr4.2:33270877-33270896 MS.gene052290:CDS 60.0%
TAAGGGGAGGTTTGTGGCGG+AGG - chr4.2:33270798-33270817 MS.gene052290:CDS 60.0%
TGGGTTGCGGCGGTGATAGT+GGG + chr4.2:33270055-33270074 None:intergenic 60.0%
TGGTCTATCGGCGCTGCACA+TGG - chr4.2:33270477-33270496 MS.gene052290:CDS 60.0%
! CGGTGGTTGGTCGGAGAGTT+GGG - chr4.2:33270869-33270888 MS.gene052290:CDS 60.0%
! GGAGAGTGAGGGATTGGTGG+TGG + chr4.2:33270012-33270031 None:intergenic 60.0%
! GGGTTTGTGGCGGAGAGTGA+GGG + chr4.2:33270023-33270042 None:intergenic 60.0%
! GGTGGTTGGTCGGAGAGTTG+GGG - chr4.2:33270870-33270889 MS.gene052290:CDS 60.0%
! TGGGTTTGTGGCGGAGAGTG+AGG + chr4.2:33270024-33270043 None:intergenic 60.0%
! TGTGGCGGAGAGTGAGGGAT+TGG + chr4.2:33270018-33270037 None:intergenic 60.0%
! TTGGGTTGCGGCGGTGATAG+TGG + chr4.2:33270056-33270075 None:intergenic 60.0%
! TTTCTAGCGGCGGTCCACCA+GGG + chr4.2:33270283-33270302 None:intergenic 60.0%
!! CGCGGTAATCATCGGCTTCG+AGG + chr4.2:33270333-33270352 None:intergenic 60.0%
!! GAGTGAGGGATTGGTGGTGG+TGG + chr4.2:33270009-33270028 None:intergenic 60.0%
!! GGCGGTGATAGTGGGGAGTT+TGG + chr4.2:33270047-33270066 None:intergenic 60.0%
!! TAACGCATGGCTCTGAGCCG+AGG + chr4.2:33270408-33270427 None:intergenic 60.0%
!! TTTTCTAGCGGCGGTCCACC+AGG + chr4.2:33270284-33270303 None:intergenic 60.0%
AATGAAGTCGGCGGGGACCC+AGG + chr4.2:33270230-33270249 None:intergenic 65.0%
CGGGGACCCAGGATGGTTCA+TGG + chr4.2:33270219-33270238 None:intergenic 65.0%
GGCGGAGAGTGAGGGATTGG+TGG + chr4.2:33270015-33270034 None:intergenic 65.0%
TGGCGGAAGCGGTGGTTGGT+CGG - chr4.2:33270860-33270879 MS.gene052290:CDS 65.0%
! GCGGTGGTTGGTCGGAGAGT+TGG - chr4.2:33270868-33270887 MS.gene052290:CDS 65.0%
! GGGTTGCGGCGGTGATAGTG+GGG + chr4.2:33270054-33270073 None:intergenic 65.0%
!! ATATGCGGTGGCGGAAGCGG+TGG - chr4.2:33270852-33270871 MS.gene052290:CDS 65.0%
AAGTCGGCGGGGACCCAGGA+TGG + chr4.2:33270226-33270245 None:intergenic 70.0%
TCGGCGCTGCACATGGCAGC+TGG - chr4.2:33270484-33270503 MS.gene052290:CDS 70.0%
!! GCGGTGGCGGAAGCGGTGGT+TGG - chr4.2:33270856-33270875 MS.gene052290:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 33269920 33271086 33269920 ID=MS.gene052290
chr4.2 mRNA 33269920 33271086 33269920 ID=MS.gene052290.t1;Parent=MS.gene052290
chr4.2 exon 33269920 33271086 33269920 ID=MS.gene052290.t1.exon1;Parent=MS.gene052290.t1
chr4.2 CDS 33269920 33271086 33269920 ID=cds.MS.gene052290.t1;Parent=MS.gene052290.t1
Gene Sequence

>MS.gene052290

ATGGAAGCTTTGTTCCTTACCAAACCAATTTCTCACTTCAAACCCAAACACTCTCTATCTCCCAAACACCCATTTCAATTTCTCTCCCACCACCACCAATCCCTCACTCTCCGCCACAAACCCACCAAACTCCCCACTATCACCGCCGCAACCCAAAACCAACAACAACAAGAAGAACAAACCACACCCAAAACCATTGAAGATGAAGAATCCTACGGGGAAGTCAAAAAAATCATCGGAAGCAAAGCCTTGGAAGATTCCACCGGCATGGAGTATCTCATTGAATGGAAAGACGGCCATGAACCATCCTGGGTCCCCGCCGACTTCATTGCGAAAGACGTCGTCGCCGAATACGAAACTCCCTGGTGGACCGCCGCTAGAAAATCCGACGAAAATGCCCTCAAAACAATCCTCGAAGCCGATGATTACCGCGACGTAAATGCAGTAGACTCCGACGGTAGAACCGCACTTCTCTTTGTCGCTGGCCTCGGCTCAGAGCCATGCGTTAAGCTCTTAGCCGAAGCCGGCGCTAATTTAGACCACCGCGATAATAACGGTGGTCTATCGGCGCTGCACATGGCAGCTGGATATGTAAGACCTGGAGTAGCAAAATTGCTACTCGAGCTCGGCGCTGATCCTGAAATCAGCGACGATCGTGGAAGAACAGCGTTGGATTTAGCGAGGGAGTTATTAAAAGCGACACCAAAGGGTAACCCAATGCAATTCGGTAGAAGAATGGGGTTAGAAGGTGTGGTTAGGGTTTTAGAAGGTGCAGTGTTTGAATATGCTGAGGTAGAGGAGATATTGGAGAAGAGAGGGAAAGGCGAGAATTTGGAGTATTTGGTGAAATGGAAAGATGGAAGTGCTAATGAGTGGATTAAGGGGAGGTTTGTGGCGGAGGATTTGGTGAGGGATTATGAAGCTGGGCTTGAATATGCGGTGGCGGAAGCGGTGGTTGGTCGGAGAGTTGGGGATGATGGGAAGTATGAGTTTTTGGTGAAATGGATTGATTTGGATGAACCTACTTGGGAGCCTGAAGAGAATGTTGATTCTGAACTTGTTAAGGTGTTTGATTTGAGTAATAAACAAGCTCAACCTGGTAATGATAATGGGGTTTCTACGGTTGGTTTGAGTCAGGATGGGTCAAATATTGTTAGTGCATCATAA

Protein sequence

>MS.gene052290.t1

MEALFLTKPISHFKPKHSLSPKHPFQFLSHHHQSLTLRHKPTKLPTITAATQNQQQQEEQTTPKTIEDEESYGEVKKIIGSKALEDSTGMEYLIEWKDGHEPSWVPADFIAKDVVAEYETPWWTAARKSDENALKTILEADDYRDVNAVDSDGRTALLFVAGLGSEPCVKLLAEAGANLDHRDNNGGLSALHMAAGYVRPGVAKLLLELGADPEISDDRGRTALDLARELLKATPKGNPMQFGRRMGLEGVVRVLEGAVFEYAEVEEILEKRGKGENLEYLVKWKDGSANEWIKGRFVAEDLVRDYEAGLEYAVAEAVVGRRVGDDGKYEFLVKWIDLDEPTWEPEENVDSELVKVFDLSNKQAQPGNDNGVSTVGLSQDGSNIVSAS