Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81039.t1 | XP_003627447.1 | 94.4 | 395 | 18 | 2 | 1 | 395 | 1 | 391 | 3.60E-194 | 687.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81039.t1 | G7L969 | 94.4 | 395 | 18 | 2 | 1 | 395 | 1 | 391 | 2.6e-194 | 687.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04985 | MS.gene81039 | 0.816951 | 4.24E-52 | -1.69E-46 |
| MS.gene051025 | MS.gene81039 | 0.825843 | 3.76E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81039.t1 | MTR_8g023130 | 96.203 | 395 | 11 | 2 | 1 | 395 | 1 | 391 | 0.0 | 777 |
| MS.gene81039.t1 | MTR_8g079482 | 27.874 | 348 | 199 | 16 | 75 | 395 | 139 | 461 | 2.22e-13 | 72.0 |
| MS.gene81039.t1 | MTR_8g079482 | 27.874 | 348 | 199 | 16 | 75 | 395 | 49 | 371 | 2.84e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81039.t1 | AT1G53860 | 42.927 | 410 | 132 | 21 | 16 | 395 | 32 | 369 | 1.89e-73 | 236 |
| MS.gene81039.t1 | AT1G53860 | 45.773 | 343 | 105 | 18 | 64 | 395 | 29 | 301 | 5.30e-68 | 220 |
| MS.gene81039.t1 | AT2G02170 | 30.532 | 357 | 196 | 16 | 56 | 395 | 98 | 419 | 3.70e-21 | 95.9 |
| MS.gene81039.t1 | AT2G02170 | 30.532 | 357 | 196 | 16 | 56 | 395 | 98 | 419 | 3.70e-21 | 95.9 |
| MS.gene81039.t1 | AT2G02170 | 30.532 | 357 | 196 | 16 | 56 | 395 | 98 | 419 | 3.70e-21 | 95.9 |
| MS.gene81039.t1 | AT2G02170 | 30.532 | 357 | 196 | 16 | 56 | 395 | 98 | 419 | 3.70e-21 | 95.9 |
| MS.gene81039.t1 | AT2G02170 | 32.099 | 324 | 170 | 16 | 92 | 395 | 1 | 294 | 7.43e-21 | 93.6 |
| MS.gene81039.t1 | AT2G02170 | 32.099 | 324 | 170 | 16 | 92 | 395 | 1 | 294 | 7.43e-21 | 93.6 |
| MS.gene81039.t1 | AT1G67590 | 31.013 | 158 | 86 | 3 | 238 | 395 | 141 | 275 | 1.81e-12 | 67.8 |
| MS.gene81039.t1 | AT1G67590 | 31.013 | 158 | 86 | 3 | 238 | 395 | 141 | 275 | 4.62e-12 | 67.4 |
Find 65 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCTTCTGCTTTAGCATTT+TGG | 0.143930 | 8.4:+71603727 | None:intergenic |
| TACCTGAATTTCGGTAAAAT+TGG | 0.197863 | 8.4:+71604623 | None:intergenic |
| CAAACTCAGAGGTTTCTTTC+AGG | 0.200803 | 8.4:+71605972 | None:intergenic |
| TTAGAAGGAAAACTCTTTCT+TGG | 0.240297 | 8.4:+71605785 | None:intergenic |
| TCAAAGTTCTTCTTCAAGTT+TGG | 0.247781 | 8.4:-71605552 | MS.gene81039:CDS |
| TCTTCACTTGAGCTCCAATT+TGG | 0.269164 | 8.4:+71604278 | None:intergenic |
| GCTGTTTCATCTTCAGAATC+TGG | 0.297830 | 8.4:-71605680 | MS.gene81039:CDS |
| ATGATTTGGTTGCGCCAAAT+TGG | 0.298089 | 8.4:-71604292 | MS.gene81039:CDS |
| TCTTCTTCTTCTAGCATTGT+TGG | 0.302752 | 8.4:-71605818 | MS.gene81039:CDS |
| TGGAACATCAAAGTATGATT+TGG | 0.316443 | 8.4:-71604306 | MS.gene81039:CDS |
| GGTTCTGAATACCTGAATTT+CGG | 0.330950 | 8.4:+71604614 | None:intergenic |
| CCAACAGACATAGTACTAAA+AGG | 0.331635 | 8.4:-71605485 | MS.gene81039:intron |
| TCAGCATCATCCCATTTAGA+AGG | 0.351555 | 8.4:+71605770 | None:intergenic |
| GGAACAAGACAATGTGATAA+TGG | 0.370159 | 8.4:-71605659 | MS.gene81039:CDS |
| TAATGGCTTTAAGCAGAAAA+TGG | 0.377630 | 8.4:-71605642 | MS.gene81039:CDS |
| CGCAGGCGATGAACTCTTGA+AGG | 0.387602 | 8.4:+71604445 | None:intergenic |
| TCTGCATTGGTGTTTGAAAC+TGG | 0.400700 | 8.4:+71605938 | None:intergenic |
| AGAAGAATAAGTGCTGTCTT+AGG | 0.401449 | 8.4:-71604166 | MS.gene81039:intron |
| CTTCTCATCGTCTTCCCAAC+TGG | 0.417797 | 8.4:+71604184 | None:intergenic |
| TTTGGAGGTTTATCCATGCT+TGG | 0.417920 | 8.4:+71603745 | None:intergenic |
| GAAGTTGTGGAACTTCCTAA+TGG | 0.426219 | 8.4:+71604482 | None:intergenic |
| AGTGGTCTACCAGGTGTAGA+AGG | 0.428314 | 8.4:+71605863 | None:intergenic |
| CTCAAGTGAAGAGGAGGAAA+AGG | 0.432830 | 8.4:-71604267 | MS.gene81039:CDS |
| CGCTAGTAGGTCAGGACCAT+TGG | 0.434574 | 8.4:-71604408 | MS.gene81039:CDS |
| ACCTACTAGCGGGAGTGTTA+TGG | 0.439597 | 8.4:+71604420 | None:intergenic |
| AACACTCCCGCTAGTAGGTC+AGG | 0.463693 | 8.4:-71604416 | MS.gene81039:CDS |
| GGCAGCTATACAATCAGAAT+CGG | 0.470179 | 8.4:+71604205 | None:intergenic |
| GGCACAGAAATGACTCCATT+AGG | 0.474794 | 8.4:-71604497 | MS.gene81039:CDS |
| AAGGAAAACTCTTTCTTGGA+AGG | 0.487386 | 8.4:+71605789 | None:intergenic |
| TGATTGTATAGCTGCCAGTT+GGG | 0.489579 | 8.4:-71604198 | MS.gene81039:CDS |
| AGGAAATATCGAAAAGTTTG+AGG | 0.497964 | 8.4:-71604247 | MS.gene81039:CDS |
| TCAATGAAATCATCAACAAA+AGG | 0.501411 | 8.4:+71606013 | None:intergenic |
| AAGCTGAAAAGTGGTCTACC+AGG | 0.520352 | 8.4:+71605854 | None:intergenic |
| CTGATTGTATAGCTGCCAGT+TGG | 0.520802 | 8.4:-71604199 | MS.gene81039:CDS |
| TATTCAGAACCAACAAAAGA+AGG | 0.526385 | 8.4:-71604602 | MS.gene81039:CDS |
| TTTAGTACTATGTCTGTTGG+TGG | 0.529642 | 8.4:+71605488 | None:intergenic |
| GAAGAACTGAAGCTGAAAAG+TGG | 0.537400 | 8.4:+71605845 | None:intergenic |
| CTTTAAGCAGAAAATGGATG+AGG | 0.543055 | 8.4:-71605636 | MS.gene81039:CDS |
| AAGCTCTAGCACTGTTATTG+TGG | 0.548571 | 8.4:+71605528 | None:intergenic |
| GAGGTTAAACACAAAGATGT+TGG | 0.548887 | 8.4:-71604518 | MS.gene81039:CDS |
| CTAGAAGCTCCTTCTACACC+TGG | 0.550547 | 8.4:-71605872 | MS.gene81039:CDS |
| AACAGTGCTAGAGCTTTCCA+TGG | 0.566797 | 8.4:-71605521 | MS.gene81039:CDS |
| GCCATAACACTCCCGCTAGT+AGG | 0.579208 | 8.4:-71604421 | MS.gene81039:CDS |
| GCGGGAGTGTTATGGCGCGC+AGG | 0.582486 | 8.4:+71604428 | None:intergenic |
| ATGTGTAATGCACATGGGAT+GGG | 0.593838 | 8.4:-71603248 | MS.gene81039:CDS |
| TTATCTAACATCGATAGCAA+TGG | 0.594700 | 8.4:-71604383 | MS.gene81039:CDS |
| TATGTGTAATGCACATGGGA+TGG | 0.596137 | 8.4:-71603249 | MS.gene81039:CDS |
| TTTAAGCAGAAAATGGATGA+GGG | 0.600087 | 8.4:-71605635 | MS.gene81039:CDS |
| AAAATGCTAAAGCAGAAGCC+AGG | 0.601345 | 8.4:-71603725 | MS.gene81039:CDS |
| AATGGTCCTGACCTACTAGC+GGG | 0.611489 | 8.4:+71604410 | None:intergenic |
| TTGGAGCTCAAGTGAAGAGG+AGG | 0.612723 | 8.4:-71604273 | MS.gene81039:CDS |
| AAAGTGTTGCTATTATGAGC+TGG | 0.619013 | 8.4:+71605713 | None:intergenic |
| TTCAGGTTCAGCTTGCAAAG+TGG | 0.619399 | 8.4:+71605989 | None:intergenic |
| TTGGTGGACATGAGATCCCA+TGG | 0.620137 | 8.4:+71605504 | None:intergenic |
| AAATTGGAGCTCAAGTGAAG+AGG | 0.625563 | 8.4:-71604276 | MS.gene81039:CDS |
| CTCATGAATCACTTCTGTGT+AGG | 0.629364 | 8.4:+71604538 | None:intergenic |
| GCAGGCGATGAACTCTTGAA+GGG | 0.636799 | 8.4:+71604446 | None:intergenic |
| TCGATGTTAGATAATGCCAA+TGG | 0.645330 | 8.4:+71604392 | None:intergenic |
| AGATTTATGTGTAATGCACA+TGG | 0.651320 | 8.4:-71603254 | MS.gene81039:CDS |
| CGTGTGACATCTTGAAGTTG+TGG | 0.665570 | 8.4:+71604469 | None:intergenic |
| CAATGGTCCTGACCTACTAG+CGG | 0.670346 | 8.4:+71604409 | None:intergenic |
| ACAGTGCTAGAGCTTTCCAT+GGG | 0.685719 | 8.4:-71605520 | MS.gene81039:CDS |
| TAAAGACTTGACAAACTCAG+AGG | 0.691687 | 8.4:+71605961 | None:intergenic |
| CTACACAGAAGTGATTCATG+AGG | 0.706893 | 8.4:-71604537 | MS.gene81039:CDS |
| GATTTATGTGTAATGCACAT+GGG | 0.713044 | 8.4:-71603253 | MS.gene81039:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATAATAATAAAAAGTT+TGG | + | chr8.4:71603951-71603970 | None:intergenic | 10.0% |
| !! | AAATTTATGAGAAATAGATT+TGG | + | chr8.4:71605619-71605638 | None:intergenic | 15.0% |
| !! | TAAATACCAAACTTAAAATA+TGG | - | chr8.4:71605920-71605939 | MS.gene81039:CDS | 15.0% |
| !! | TAACAATAATAAACAAACTA+TGG | + | chr8.4:71605762-71605781 | None:intergenic | 15.0% |
| !!! | AATCTATTTCTCATAAATTT+TGG | - | chr8.4:71605619-71605638 | MS.gene81039:CDS | 15.0% |
| !!! | AATTTTATTAATTCAACAAC+TGG | - | chr8.4:71604611-71604630 | MS.gene81039:CDS | 15.0% |
| !!! | CGATTAAATTTTTAAAACAT+TGG | + | chr8.4:71605169-71605188 | None:intergenic | 15.0% |
| !!! | GTTGAAAATATCTTTTAATT+AGG | + | chr8.4:71605432-71605451 | None:intergenic | 15.0% |
| !! | ATTTAATCGAAAAGTTCAAT+TGG | - | chr8.4:71605180-71605199 | MS.gene81039:intron | 20.0% |
| !! | TGTTAACTACTTAATTTAGA+GGG | + | chr8.4:71605877-71605896 | None:intergenic | 20.0% |
| !! | TGTTAATGATAGTTTACTAA+TGG | - | chr8.4:71605777-71605796 | MS.gene81039:CDS | 20.0% |
| !! | TTGTTAACTACTTAATTTAG+AGG | + | chr8.4:71605878-71605897 | None:intergenic | 20.0% |
| !!! | ACATTATTGATATTTTCAAG+TGG | + | chr8.4:71605685-71605704 | None:intergenic | 20.0% |
| !!! | CAATGAAAAAGTTGAAATTT+TGG | + | chr8.4:71603852-71603871 | None:intergenic | 20.0% |
| !!! | CAATGTTTTAAAAATCAAAC+CGG | + | chr8.4:71605309-71605328 | None:intergenic | 20.0% |
| !!! | CATTTTTCTAAACTTCAATT+TGG | - | chr8.4:71604966-71604985 | MS.gene81039:intron | 20.0% |
| !!! | TTTTAAAACATTGGTTTGTA+AGG | + | chr8.4:71605160-71605179 | None:intergenic | 20.0% |
| ! | TCAATGAAATCATCAACAAA+AGG | + | chr8.4:71603282-71603301 | None:intergenic | 25.0% |
| !! | AAAGAGTTTTCCTTCTAAAT+GGG | - | chr8.4:71603512-71603531 | MS.gene81039:intron | 25.0% |
| !! | AATAAGAATCCTTCTTTTGT+TGG | + | chr8.4:71604702-71604721 | None:intergenic | 25.0% |
| !! | TTTTGCAAATTATTACCAGT+GGG | - | chr8.4:71604210-71604229 | MS.gene81039:CDS | 25.0% |
| !!! | AAATTTTGGTTAGTTTGCAA+TGG | - | chr8.4:71605633-71605652 | MS.gene81039:CDS | 25.0% |
| !!! | TGATATTTTCAAGTGGAATT+TGG | + | chr8.4:71605678-71605697 | None:intergenic | 25.0% |
| AACTACTTAATTTAGAGGGT+GGG | + | chr8.4:71605873-71605892 | None:intergenic | 30.0% | |
| AGATTTATGTGTAATGCACA+TGG | - | chr8.4:71606038-71606057 | MS.gene81039:CDS | 30.0% | |
| AGGAAATATCGAAAAGTTTG+AGG | - | chr8.4:71605045-71605064 | MS.gene81039:intron | 30.0% | |
| ATTAGCCCATGAATGAAAAT+TGG | - | chr8.4:71604472-71604491 | MS.gene81039:CDS | 30.0% | |
| ATTGTGATTTGAATTGATGC+AGG | - | chr8.4:71605501-71605520 | MS.gene81039:CDS | 30.0% | |
| CTTGTGTAGAGTTTATAAAG+AGG | - | chr8.4:71604262-71604281 | MS.gene81039:CDS | 30.0% | |
| GAACATGTATAGCAAAAACA+AGG | - | chr8.4:71603233-71603252 | MS.gene81039:CDS | 30.0% | |
| GATTTATGTGTAATGCACAT+GGG | - | chr8.4:71606039-71606058 | MS.gene81039:CDS | 30.0% | |
| GTTAAAACCTTGTCATTAGA+TGG | + | chr8.4:71604528-71604547 | None:intergenic | 30.0% | |
| TAACTACTTAATTTAGAGGG+TGG | + | chr8.4:71605874-71605893 | None:intergenic | 30.0% | |
| TACCTGAATTTCGGTAAAAT+TGG | + | chr8.4:71604672-71604691 | None:intergenic | 30.0% | |
| TATCAGTTCATTGACGAAAA+TGG | + | chr8.4:71605356-71605375 | None:intergenic | 30.0% | |
| TATTCAGAACCAACAAAAGA+AGG | - | chr8.4:71604690-71604709 | MS.gene81039:intron | 30.0% | |
| TGGAACATCAAAGTATGATT+TGG | - | chr8.4:71604986-71605005 | MS.gene81039:intron | 30.0% | |
| TTAGAAGGAAAACTCTTTCT+TGG | + | chr8.4:71603510-71603529 | None:intergenic | 30.0% | |
| TTAGTATCATTGTTAGTGTC+AGG | - | chr8.4:71604448-71604467 | MS.gene81039:CDS | 30.0% | |
| TTATCTAACATCGATAGCAA+TGG | - | chr8.4:71604909-71604928 | MS.gene81039:intron | 30.0% | |
| TTTAAGCAGAAAATGGATGA+GGG | - | chr8.4:71603657-71603676 | MS.gene81039:intron | 30.0% | |
| ! | CTCTTCCAATTTTCATTCAT+GGG | + | chr8.4:71604480-71604499 | None:intergenic | 30.0% |
| ! | GAAAGAGTTTTCCTTCTAAA+TGG | - | chr8.4:71603511-71603530 | MS.gene81039:intron | 30.0% |
| ! | GTTTTGCAAATTATTACCAG+TGG | - | chr8.4:71604209-71604228 | MS.gene81039:CDS | 30.0% |
| ! | TCAAAGTTCTTCTTCAAGTT+TGG | - | chr8.4:71603740-71603759 | MS.gene81039:CDS | 30.0% |
| ! | TCTCTTCCAATTTTCATTCA+TGG | + | chr8.4:71604481-71604500 | None:intergenic | 30.0% |
| ! | TGCATTCATCTTATTTGCAT+TGG | - | chr8.4:71605468-71605487 | MS.gene81039:intron | 30.0% |
| !! | TAATGGCTTTAAGCAGAAAA+TGG | - | chr8.4:71603650-71603669 | MS.gene81039:intron | 30.0% |
| !!! | CTTCACTTAGGTTATTTTAG+CGG | - | chr8.4:71605224-71605243 | MS.gene81039:intron | 30.0% |
| !!! | GACGATCCATATTTTAAGTT+TGG | + | chr8.4:71605929-71605948 | None:intergenic | 30.0% |
| !!! | TATTTTCAAGTGGAATTTGG+TGG | + | chr8.4:71605675-71605694 | None:intergenic | 30.0% |
| AAGAAGCAAAAATCCAAGCA+TGG | - | chr8.4:71605534-71605553 | MS.gene81039:CDS | 35.0% | |
| AAGGAAAACTCTTTCTTGGA+AGG | + | chr8.4:71603506-71603525 | None:intergenic | 35.0% | |
| AATGGGATGATGCTGAAAAA+TGG | - | chr8.4:71603529-71603548 | MS.gene81039:intron | 35.0% | |
| ATCATTACATCGAAAACCGT+TGG | + | chr8.4:71605962-71605981 | None:intergenic | 35.0% | |
| CAGACATAGTACTAAAAGGT+AGG | - | chr8.4:71603811-71603830 | MS.gene81039:intron | 35.0% | |
| CCAACAGACATAGTACTAAA+AGG | - | chr8.4:71603807-71603826 | MS.gene81039:intron | 35.0% | |
| CTTTAAGCAGAAAATGGATG+AGG | - | chr8.4:71603656-71603675 | MS.gene81039:intron | 35.0% | |
| GAGGTTAAACACAAAGATGT+TGG | - | chr8.4:71604774-71604793 | MS.gene81039:intron | 35.0% | |
| GAGTTATGTAGCACTTATAC+TGG | - | chr8.4:71604137-71604156 | MS.gene81039:intron | 35.0% | |
| GCTACATAACTCAGAATACA+AGG | + | chr8.4:71604129-71604148 | None:intergenic | 35.0% | |
| GGAACAAGACAATGTGATAA+TGG | - | chr8.4:71603633-71603652 | MS.gene81039:intron | 35.0% | |
| GTGTAGAGTTTATAAAGAGG+AGG | - | chr8.4:71604265-71604284 | MS.gene81039:CDS | 35.0% | |
| TAAAGACTTGACAAACTCAG+AGG | + | chr8.4:71603334-71603353 | None:intergenic | 35.0% | |
| TAACCTAAGTGAAGAAAGTG+TGG | + | chr8.4:71605218-71605237 | None:intergenic | 35.0% | |
| TCGATGTTAGATAATGCCAA+TGG | + | chr8.4:71604903-71604922 | None:intergenic | 35.0% | |
| TCTTCTTCTTCTAGCATTGT+TGG | - | chr8.4:71603474-71603493 | MS.gene81039:intron | 35.0% | |
| TTAAAAATCAAACCGGCATC+AGG | + | chr8.4:71605302-71605321 | None:intergenic | 35.0% | |
| TTTAGTACTATGTCTGTTGG+TGG | + | chr8.4:71603807-71603826 | None:intergenic | 35.0% | |
| ! | AACGGTTTTCGATGTAATGA+TGG | - | chr8.4:71605961-71605980 | MS.gene81039:CDS | 35.0% |
| ! | AGAAGAATAAGTGCTGTCTT+AGG | - | chr8.4:71605126-71605145 | MS.gene81039:intron | 35.0% |
| ! | AGCCAATTTTACCGAAATTC+AGG | - | chr8.4:71604667-71604686 | MS.gene81039:intron | 35.0% |
| ! | CCTTTTAGTACTATGTCTGT+TGG | + | chr8.4:71603810-71603829 | None:intergenic | 35.0% |
| !! | AAAGTGTTGCTATTATGAGC+TGG | + | chr8.4:71603582-71603601 | None:intergenic | 35.0% |
| !! | AGGGTTTTTCAGAGAAATCA+AGG | - | chr8.4:71603676-71603695 | MS.gene81039:intron | 35.0% |
| !! | GGGTTTTTCAGAGAAATCAA+GGG | - | chr8.4:71603677-71603696 | MS.gene81039:intron | 35.0% |
| !! | GGTTCTGAATACCTGAATTT+CGG | + | chr8.4:71604681-71604700 | None:intergenic | 35.0% |
| !! | TCATCTTATTTGCATTGGCT+AGG | - | chr8.4:71605473-71605492 | MS.gene81039:intron | 35.0% |
| AAAATGCTAAAGCAGAAGCC+AGG | - | chr8.4:71605567-71605586 | MS.gene81039:CDS | 40.0% | |
| AAATTGGAGCTCAAGTGAAG+AGG | - | chr8.4:71605016-71605035 | MS.gene81039:intron | 40.0% | |
| AAGCAGCTTGAACTGTTTGT+AGG | - | chr8.4:71606011-71606030 | MS.gene81039:CDS | 40.0% | |
| ACACTCTTAGGTCAAGTCAA+TGG | + | chr8.4:71604066-71604085 | None:intergenic | 40.0% | |
| AGAATCCTACCTATCCGATA+TGG | + | chr8.4:71604244-71604263 | None:intergenic | 40.0% | |
| AGCAGTCACGATAATAGTTG+CGG | - | chr8.4:71604549-71604568 | MS.gene81039:CDS | 40.0% | |
| AGTGGGATTTAGTCCCATAT+CGG | - | chr8.4:71604227-71604246 | MS.gene81039:CDS | 40.0% | |
| ATGTGTAATGCACATGGGAT+GGG | - | chr8.4:71606044-71606063 | MS.gene81039:CDS | 40.0% | |
| CAAACTCAGAGGTTTCTTTC+AGG | + | chr8.4:71603323-71603342 | None:intergenic | 40.0% | |
| CACTCTTAGGTCAAGTCAAT+GGG | + | chr8.4:71604065-71604084 | None:intergenic | 40.0% | |
| CCTTACAAAACCAGCTTGTA+CGG | + | chr8.4:71604300-71604319 | None:intergenic | 40.0% | |
| CTACACAGAAGTGATTCATG+AGG | - | chr8.4:71604755-71604774 | MS.gene81039:intron | 40.0% | |
| CTCATGAATCACTTCTGTGT+AGG | + | chr8.4:71604757-71604776 | None:intergenic | 40.0% | |
| CTGAAGTAGTAGAGAAGGTA+AGG | + | chr8.4:71605379-71605398 | None:intergenic | 40.0% | |
| GAAAGCTGAAGTAGTAGAGA+AGG | + | chr8.4:71605384-71605403 | None:intergenic | 40.0% | |
| GAACCACACTTTCTTCACTT+AGG | - | chr8.4:71605212-71605231 | MS.gene81039:intron | 40.0% | |
| GAAGAACTGAAGCTGAAAAG+TGG | + | chr8.4:71603450-71603469 | None:intergenic | 40.0% | |
| GAAGTTGTGGAACTTCCTAA+TGG | + | chr8.4:71604813-71604832 | None:intergenic | 40.0% | |
| GAATCCTACCTATCCGATAT+GGG | + | chr8.4:71604243-71604262 | None:intergenic | 40.0% | |
| GACGAAAATGGTCATCTTAG+CGG | + | chr8.4:71605344-71605363 | None:intergenic | 40.0% | |
| GATTTAGTCCCATATCGGAT+AGG | - | chr8.4:71604232-71604251 | MS.gene81039:CDS | 40.0% | |
| GGCAGCTATACAATCAGAAT+CGG | + | chr8.4:71605090-71605109 | None:intergenic | 40.0% | |
| TATCTGGCCATCTAATGACA+AGG | - | chr8.4:71604518-71604537 | MS.gene81039:CDS | 40.0% | |
| TATGTGTAATGCACATGGGA+TGG | - | chr8.4:71606043-71606062 | MS.gene81039:CDS | 40.0% | |
| TCAGCATCATCCCATTTAGA+AGG | + | chr8.4:71603525-71603544 | None:intergenic | 40.0% | |
| TCTTCACTTGAGCTCCAATT+TGG | + | chr8.4:71605017-71605036 | None:intergenic | 40.0% | |
| TCTTGAGTTCGTGTTAGTGT+CGG | - | chr8.4:71604354-71604373 | MS.gene81039:CDS | 40.0% | |
| TGATTGTATAGCTGCCAGTT+GGG | - | chr8.4:71605094-71605113 | MS.gene81039:intron | 40.0% | |
| TGTGACAACCGTATACATGT+TGG | + | chr8.4:71604175-71604194 | None:intergenic | 40.0% | |
| TTAATTTAGAGGGTGGGTGA+GGG | + | chr8.4:71605867-71605886 | None:intergenic | 40.0% | |
| TTAGATGGCCAGATAGAAAG+AGG | + | chr8.4:71604513-71604532 | None:intergenic | 40.0% | |
| TTCAACCAACCTACACTCTT+AGG | + | chr8.4:71604078-71604097 | None:intergenic | 40.0% | |
| TTTGGAGGTTTATCCATGCT+TGG | + | chr8.4:71605550-71605569 | None:intergenic | 40.0% | |
| ! | AAGCTCTAGCACTGTTATTG+TGG | + | chr8.4:71603767-71603786 | None:intergenic | 40.0% |
| ! | AGTGAAGAAAGTGTGGTTCA+CGG | + | chr8.4:71605211-71605230 | None:intergenic | 40.0% |
| ! | CTTCTGCTTTAGCATTTTGG+AGG | + | chr8.4:71605565-71605584 | None:intergenic | 40.0% |
| ! | GAGTCTTCTGTTTTCTGCAT+TGG | + | chr8.4:71603370-71603389 | None:intergenic | 40.0% |
| ! | GCTGTTTCATCTTCAGAATC+TGG | - | chr8.4:71603612-71603631 | MS.gene81039:intron | 40.0% |
| ! | TCAAGTGGAATTTGGTGGAT+AGG | + | chr8.4:71605670-71605689 | None:intergenic | 40.0% |
| ! | TCTGCATTGGTGTTTGAAAC+TGG | + | chr8.4:71603357-71603376 | None:intergenic | 40.0% |
| ! | TGGCTTCTGCTTTAGCATTT+TGG | + | chr8.4:71605568-71605587 | None:intergenic | 40.0% |
| ! | TTGACTTGACCTAAGAGTGT+AGG | - | chr8.4:71604066-71604085 | MS.gene81039:intron | 40.0% |
| !! | ATGATTTGGTTGCGCCAAAT+TGG | - | chr8.4:71605000-71605019 | MS.gene81039:intron | 40.0% |
| !!! | TACCTCAAGCTTTTTTGACC+TGG | + | chr8.4:71605588-71605607 | None:intergenic | 40.0% |
| AACAGTGCTAGAGCTTTCCA+TGG | - | chr8.4:71603771-71603790 | MS.gene81039:CDS | 45.0% | |
| AAGCTGAAAAGTGGTCTACC+AGG | + | chr8.4:71603441-71603460 | None:intergenic | 45.0% | |
| ACAGTGCTAGAGCTTTCCAT+GGG | - | chr8.4:71603772-71603791 | MS.gene81039:CDS | 45.0% | |
| ACCGTATACATGTTGGACAC+CGG | + | chr8.4:71604168-71604187 | None:intergenic | 45.0% | |
| AGCCAGGTCAAAAAAGCTTG+AGG | - | chr8.4:71605583-71605602 | MS.gene81039:CDS | 45.0% | |
| CAGCTTGAACTGTTTGTAGG+TGG | - | chr8.4:71606014-71606033 | MS.gene81039:CDS | 45.0% | |
| CCAGATAGAAAGAGGAAGCT+GGG | + | chr8.4:71604505-71604524 | None:intergenic | 45.0% | |
| CCCTGTGACATCAATTGTGT+CGG | - | chr8.4:71604330-71604349 | MS.gene81039:CDS | 45.0% | |
| CCGACACAATTGATGTCACA+GGG | + | chr8.4:71604333-71604352 | None:intergenic | 45.0% | |
| CCTGTGACATCAATTGTGTC+GGG | - | chr8.4:71604331-71604350 | MS.gene81039:CDS | 45.0% | |
| CGTGTGACATCTTGAAGTTG+TGG | + | chr8.4:71604826-71604845 | None:intergenic | 45.0% | |
| CTCAAGTGAAGAGGAGGAAA+AGG | - | chr8.4:71605025-71605044 | MS.gene81039:intron | 45.0% | |
| CTGATTGTATAGCTGCCAGT+TGG | - | chr8.4:71605093-71605112 | MS.gene81039:intron | 45.0% | |
| CTTAATTTAGAGGGTGGGTG+AGG | + | chr8.4:71605868-71605887 | None:intergenic | 45.0% | |
| CTTGAGTTCGTGTTAGTGTC+GGG | - | chr8.4:71604355-71604374 | MS.gene81039:CDS | 45.0% | |
| GAAAACCGTTGGATCACGAT+CGG | + | chr8.4:71605951-71605970 | None:intergenic | 45.0% | |
| GATATGGGACTAAATCCCAC+TGG | + | chr8.4:71604228-71604247 | None:intergenic | 45.0% | |
| GGCACAGAAATGACTCCATT+AGG | - | chr8.4:71604795-71604814 | MS.gene81039:intron | 45.0% | |
| TAGTCCCATATCGGATAGGT+AGG | - | chr8.4:71604236-71604255 | MS.gene81039:CDS | 45.0% | |
| TCCGGTGTCCAACATGTATA+CGG | - | chr8.4:71604164-71604183 | MS.gene81039:intron | 45.0% | |
| ! | AGGGCTAGTAATGTGGTCAA+AGG | + | chr8.4:71605835-71605854 | None:intergenic | 45.0% |
| ! | CTTGACCTAAGAGTGTAGGT+TGG | - | chr8.4:71604070-71604089 | MS.gene81039:intron | 45.0% |
| ! | TTCAGGTTCAGCTTGCAAAG+TGG | + | chr8.4:71603306-71603325 | None:intergenic | 45.0% |
| !!! | CCGTACAAGCTGGTTTTGTA+AGG | - | chr8.4:71604297-71604316 | MS.gene81039:CDS | 45.0% |
| AATGGTCCTGACCTACTAGC+GGG | + | chr8.4:71604885-71604904 | None:intergenic | 50.0% | |
| AGCACTTATACTGGCGTGTC+CGG | - | chr8.4:71604146-71604165 | MS.gene81039:intron | 50.0% | |
| AGTGGTCTACCAGGTGTAGA+AGG | + | chr8.4:71603432-71603451 | None:intergenic | 50.0% | |
| ATCGTCCGATCGTGATCCAA+CGG | - | chr8.4:71605943-71605962 | MS.gene81039:CDS | 50.0% | |
| CAAAACCAGCTTGTACGGTG+AGG | + | chr8.4:71604295-71604314 | None:intergenic | 50.0% | |
| CAATGGTCCTGACCTACTAG+CGG | + | chr8.4:71604886-71604905 | None:intergenic | 50.0% | |
| CCCAGCTTCCTCTTTCTATC+TGG | - | chr8.4:71604502-71604521 | MS.gene81039:CDS | 50.0% | |
| CCCGACACAATTGATGTCAC+AGG | + | chr8.4:71604334-71604353 | None:intergenic | 50.0% | |
| CTAGAAGCTCCTTCTACACC+TGG | - | chr8.4:71603420-71603439 | MS.gene81039:intron | 50.0% | |
| CTTCTCATCGTCTTCCCAAC+TGG | + | chr8.4:71605111-71605130 | None:intergenic | 50.0% | |
| GCAGGCGATGAACTCTTGAA+GGG | + | chr8.4:71604849-71604868 | None:intergenic | 50.0% | |
| GCCAGATAGAAAGAGGAAGC+TGG | + | chr8.4:71604506-71604525 | None:intergenic | 50.0% | |
| TTGGAGCTCAAGTGAAGAGG+AGG | - | chr8.4:71605019-71605038 | MS.gene81039:intron | 50.0% | |
| ! | GAGGTTGAGGGCTAGTAATG+TGG | + | chr8.4:71605842-71605861 | None:intergenic | 50.0% |
| ! | TTGGTGGACATGAGATCCCA+TGG | + | chr8.4:71603791-71603810 | None:intergenic | 50.0% |
| !! | ACCTACTAGCGGGAGTGTTA+TGG | + | chr8.4:71604875-71604894 | None:intergenic | 50.0% |
| AACACTCCCGCTAGTAGGTC+AGG | - | chr8.4:71604876-71604895 | MS.gene81039:intron | 55.0% | |
| ATCAAACCGGCATCAGGTCG+AGG | + | chr8.4:71605296-71605315 | None:intergenic | 55.0% | |
| CGCAGGCGATGAACTCTTGA+AGG | + | chr8.4:71604850-71604869 | None:intergenic | 55.0% | |
| CGCTAGTAGGTCAGGACCAT+TGG | - | chr8.4:71604884-71604903 | MS.gene81039:intron | 55.0% | |
| GCCATAACACTCCCGCTAGT+AGG | - | chr8.4:71604871-71604890 | MS.gene81039:intron | 55.0% | |
| GTTGAACCTCGACCTGATGC+CGG | - | chr8.4:71605287-71605306 | MS.gene81039:intron | 55.0% | |
| TGGGTGAGGGTAGAGGTTGA+GGG | + | chr8.4:71605854-71605873 | None:intergenic | 55.0% | |
| GCACTCCTCACCGTACAAGC+TGG | - | chr8.4:71604287-71604306 | MS.gene81039:CDS | 60.0% | |
| GTGGGTGAGGGTAGAGGTTG+AGG | + | chr8.4:71605855-71605874 | None:intergenic | 60.0% | |
| TAGAGGGTGGGTGAGGGTAG+AGG | + | chr8.4:71605861-71605880 | None:intergenic | 60.0% | |
| !! | GCGGGAGTGTTATGGCGCGC+AGG | + | chr8.4:71604867-71604886 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 71603231 | 71606083 | 71603231 | ID=MS.gene81039 |
| chr8.4 | mRNA | 71603231 | 71606083 | 71603231 | ID=MS.gene81039.t1;Parent=MS.gene81039 |
| chr8.4 | exon | 71605486 | 71606083 | 71605486 | ID=MS.gene81039.t1.exon1;Parent=MS.gene81039.t1 |
| chr8.4 | CDS | 71605486 | 71606083 | 71605486 | ID=cds.MS.gene81039.t1;Parent=MS.gene81039.t1 |
| chr8.4 | exon | 71604167 | 71604668 | 71604167 | ID=MS.gene81039.t1.exon2;Parent=MS.gene81039.t1 |
| chr8.4 | CDS | 71604167 | 71604668 | 71604167 | ID=cds.MS.gene81039.t1;Parent=MS.gene81039.t1 |
| chr8.4 | exon | 71603710 | 71603791 | 71603710 | ID=MS.gene81039.t1.exon3;Parent=MS.gene81039.t1 |
| chr8.4 | CDS | 71603710 | 71603791 | 71603710 | ID=cds.MS.gene81039.t1;Parent=MS.gene81039.t1 |
| chr8.4 | exon | 71603231 | 71603281 | 71603231 | ID=MS.gene81039.t1.exon4;Parent=MS.gene81039.t1 |
| chr8.4 | CDS | 71603231 | 71603281 | 71603231 | ID=cds.MS.gene81039.t1;Parent=MS.gene81039.t1 |
| Gene Sequence |
| Protein sequence |
