Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051025.t1 | XP_003627447.1 | 94.2 | 394 | 19 | 2 | 1 | 394 | 1 | 390 | 1.40E-193 | 685.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051025.t1 | G7L969 | 94.2 | 394 | 19 | 2 | 1 | 394 | 1 | 390 | 1.0e-193 | 685.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051025 | MS.gene054662 | 0.823926 | 1.06E-53 | -1.69E-46 |
| MS.gene051025 | MS.gene057367 | 0.827579 | 1.45E-54 | -1.69E-46 |
| MS.gene051025 | MS.gene06093 | 0.802036 | 6.79E-49 | -1.69E-46 |
| MS.gene051025 | MS.gene066779 | 0.809465 | 1.87E-50 | -1.69E-46 |
| MS.gene051025 | MS.gene070324 | 0.804406 | 2.19E-49 | -1.69E-46 |
| MS.gene051025 | MS.gene071422 | 0.842102 | 3.17E-58 | -1.69E-46 |
| MS.gene051025 | MS.gene073059 | 0.841904 | 3.58E-58 | -1.69E-46 |
| MS.gene051025 | MS.gene073062 | 0.84876 | 4.99E-60 | -1.69E-46 |
| MS.gene051025 | MS.gene39911 | 0.814873 | 1.23E-51 | -1.69E-46 |
| MS.gene051025 | MS.gene49349 | 0.800423 | 1.45E-48 | -1.69E-46 |
| MS.gene051025 | MS.gene50576 | 0.806471 | 8.09E-50 | -1.69E-46 |
| MS.gene051025 | MS.gene55401 | 0.820777 | 5.73E-53 | -1.69E-46 |
| MS.gene051025 | MS.gene58835 | 0.803811 | 2.92E-49 | -1.69E-46 |
| MS.gene051025 | MS.gene72164 | 0.825964 | 3.52E-54 | -1.69E-46 |
| MS.gene051025 | MS.gene75761 | 0.833719 | 4.54E-56 | -1.69E-46 |
| MS.gene051025 | MS.gene75915 | 0.846447 | 2.16E-59 | -1.69E-46 |
| MS.gene051025 | MS.gene75918 | 0.847644 | 1.01E-59 | -1.69E-46 |
| MS.gene051025 | MS.gene78325 | 0.809575 | 1.77E-50 | -1.69E-46 |
| MS.gene051025 | MS.gene81039 | 0.825843 | 3.76E-54 | -1.69E-46 |
| MS.gene051025 | MS.gene91075 | 0.801485 | 8.81E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051025.t1 | MTR_8g023130 | 96.193 | 394 | 11 | 2 | 1 | 394 | 1 | 390 | 0.0 | 773 |
| MS.gene051025.t1 | MTR_8g079482 | 27.954 | 347 | 198 | 16 | 75 | 394 | 139 | 460 | 3.19e-13 | 71.6 |
| MS.gene051025.t1 | MTR_8g079482 | 27.954 | 347 | 198 | 16 | 75 | 394 | 49 | 370 | 6.82e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051025.t1 | AT1G53860 | 40.698 | 430 | 155 | 20 | 16 | 416 | 32 | 390 | 1.87e-72 | 234 |
| MS.gene051025.t1 | AT1G53860 | 43.132 | 364 | 126 | 18 | 64 | 416 | 29 | 322 | 5.51e-67 | 218 |
| MS.gene051025.t1 | AT2G02170 | 30.110 | 362 | 201 | 16 | 56 | 400 | 98 | 424 | 1.12e-20 | 94.4 |
| MS.gene051025.t1 | AT2G02170 | 30.110 | 362 | 201 | 16 | 56 | 400 | 98 | 424 | 1.12e-20 | 94.4 |
| MS.gene051025.t1 | AT2G02170 | 30.110 | 362 | 201 | 16 | 56 | 400 | 98 | 424 | 1.12e-20 | 94.4 |
| MS.gene051025.t1 | AT2G02170 | 30.110 | 362 | 201 | 16 | 56 | 400 | 98 | 424 | 1.12e-20 | 94.4 |
| MS.gene051025.t1 | AT2G02170 | 31.611 | 329 | 175 | 16 | 92 | 400 | 1 | 299 | 2.57e-20 | 92.0 |
| MS.gene051025.t1 | AT2G02170 | 31.611 | 329 | 175 | 16 | 92 | 400 | 1 | 299 | 2.57e-20 | 92.0 |
| MS.gene051025.t1 | AT1G67590 | 30.573 | 157 | 86 | 3 | 238 | 394 | 141 | 274 | 4.23e-12 | 66.6 |
| MS.gene051025.t1 | AT1G67590 | 30.573 | 157 | 86 | 3 | 238 | 394 | 141 | 274 | 9.78e-12 | 66.2 |
Find 67 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCTTCTGCTTTAGCATTT+TGG | 0.143930 | 8.3:+68872224 | None:intergenic |
| TACCTGAATTTCGGTAAAAT+TGG | 0.197863 | 8.3:+68873120 | None:intergenic |
| CAAACTCAGAGGTTTCTTTC+AGG | 0.200803 | 8.3:+68874469 | None:intergenic |
| TTAGAAGGAAAACTCTTTCT+TGG | 0.240297 | 8.3:+68874282 | None:intergenic |
| TCAAAGTTCTTCTTCAAGTT+TGG | 0.247781 | 8.3:-68874049 | MS.gene051025:CDS |
| CTCGAGCCACCCTCAATTCA+TGG | 0.263036 | 8.3:-68871618 | MS.gene051025:CDS |
| TCTTCACTTGAGCTCCAATT+TGG | 0.269164 | 8.3:+68872775 | None:intergenic |
| GCTGTTTCATCTTCAGAATC+TGG | 0.297830 | 8.3:-68874177 | MS.gene051025:CDS |
| ATGATTTGGTTGCGCCAAAT+TGG | 0.298089 | 8.3:-68872789 | MS.gene051025:CDS |
| TCTTCTTCTTCTAGCATTGT+TGG | 0.302752 | 8.3:-68874315 | MS.gene051025:CDS |
| AGAAAATAATAATTAATAAA+TGG | 0.310114 | 8.3:+68871592 | None:intergenic |
| TGGAACAACAAAGTATGATT+TGG | 0.316654 | 8.3:-68872803 | MS.gene051025:CDS |
| GGTTCTGAATACCTGAATTT+CGG | 0.330950 | 8.3:+68873111 | None:intergenic |
| CCAACAGACATAGTACTAAA+AGG | 0.331635 | 8.3:-68873982 | MS.gene051025:intron |
| TCAGCATCATCCCATTTAGA+AGG | 0.351555 | 8.3:+68874267 | None:intergenic |
| GGAACAAGACAATGTGATAA+TGG | 0.370159 | 8.3:-68874156 | MS.gene051025:CDS |
| TAATGGCTTTAAGCAGAAAA+TGG | 0.377630 | 8.3:-68874139 | MS.gene051025:CDS |
| TCTGCATTGGTGTTTGAAAC+TGG | 0.400700 | 8.3:+68874435 | None:intergenic |
| AGAAGAATAAGTGCTGTCTT+AGG | 0.401449 | 8.3:-68872663 | MS.gene051025:intron |
| CTTCTCATCGTCTTCCCAAC+TGG | 0.417797 | 8.3:+68872681 | None:intergenic |
| TTTGGAGGTTTATCCATGCT+TGG | 0.417920 | 8.3:+68872242 | None:intergenic |
| GAAGTTGTGGAACTTCCTAA+TGG | 0.426219 | 8.3:+68872979 | None:intergenic |
| AGTGGTCTACCAGGTGTAGA+AGG | 0.428314 | 8.3:+68874360 | None:intergenic |
| CTCAAGTGAAGAGGAGGAAA+AGG | 0.432830 | 8.3:-68872764 | MS.gene051025:CDS |
| TGCATTGCCGGATATATTGC+TGG | 0.442852 | 8.3:-68871648 | MS.gene051025:CDS |
| TGCTAGTAGGTCAGGACCAT+TGG | 0.447997 | 8.3:-68872905 | MS.gene051025:CDS |
| ACTACAATAGAATGCATTGC+CGG | 0.457306 | 8.3:-68871660 | MS.gene051025:intron |
| ACCTACTAGCAGGAGTGTTA+TGG | 0.458860 | 8.3:+68872917 | None:intergenic |
| GGCAGCTATACAATCAGAAT+CGG | 0.470179 | 8.3:+68872702 | None:intergenic |
| AAATGGTATCCATGAATTGA+GGG | 0.472814 | 8.3:+68871609 | None:intergenic |
| GGCACAGAAATGACTCCATT+AGG | 0.474794 | 8.3:-68872994 | MS.gene051025:CDS |
| TAAATGGTATCCATGAATTG+AGG | 0.483241 | 8.3:+68871608 | None:intergenic |
| AAGGAAAACTCTTTCTTGGA+AGG | 0.487386 | 8.3:+68874286 | None:intergenic |
| AACACTCCTGCTAGTAGGTC+AGG | 0.488893 | 8.3:-68872913 | MS.gene051025:CDS |
| TGATTGTATAGCTGCCAGTT+GGG | 0.489579 | 8.3:-68872695 | MS.gene051025:CDS |
| AGGAAATATCGAAAAGTTTG+AGG | 0.497964 | 8.3:-68872744 | MS.gene051025:CDS |
| TCAATGAAATCATCAACAAA+AGG | 0.501411 | 8.3:+68874510 | None:intergenic |
| GAAATAGCCAGCAATATATC+CGG | 0.519308 | 8.3:+68871641 | None:intergenic |
| AAGCTGAAAAGTGGTCTACC+AGG | 0.520352 | 8.3:+68874351 | None:intergenic |
| CTGATTGTATAGCTGCCAGT+TGG | 0.520802 | 8.3:-68872696 | MS.gene051025:CDS |
| TATTCAGAACCAACAAAAGA+AGG | 0.526385 | 8.3:-68873099 | MS.gene051025:CDS |
| TTTAGTACTATGTCTGTTGG+TGG | 0.529642 | 8.3:+68873985 | None:intergenic |
| GAAGAACTGAAGCTGAAAAG+TGG | 0.537400 | 8.3:+68874342 | None:intergenic |
| CTTTAAGCAGAAAATGGATG+AGG | 0.543055 | 8.3:-68874133 | MS.gene051025:CDS |
| AAGCTCTAGCACTGTTATTG+TGG | 0.548571 | 8.3:+68874025 | None:intergenic |
| GAGGTTAAACACAAAGATGT+TGG | 0.548887 | 8.3:-68873015 | MS.gene051025:CDS |
| CTAGAAGCTCCTTCTACACC+TGG | 0.550547 | 8.3:-68874369 | MS.gene051025:CDS |
| GCAGGCGATGAACTCTTGAA+TGG | 0.565189 | 8.3:+68872943 | None:intergenic |
| AACAGTGCTAGAGCTTTCCA+TGG | 0.566797 | 8.3:-68874018 | MS.gene051025:CDS |
| GCAGGAGTGTTATGGCGCGC+AGG | 0.574536 | 8.3:+68872925 | None:intergenic |
| AATGGTCCTGACCTACTAGC+AGG | 0.581765 | 8.3:+68872907 | None:intergenic |
| TTATGTAACATCGATAGCAA+TGG | 0.595110 | 8.3:-68872880 | MS.gene051025:CDS |
| GCCATAACACTCCTGCTAGT+AGG | 0.598039 | 8.3:-68872918 | MS.gene051025:CDS |
| TTTAAGCAGAAAATGGATGA+GGG | 0.600087 | 8.3:-68874132 | MS.gene051025:CDS |
| AAAATGCTAAAGCAGAAGCC+AGG | 0.601345 | 8.3:-68872222 | MS.gene051025:CDS |
| TTGGAGCTCAAGTGAAGAGG+AGG | 0.612723 | 8.3:-68872770 | MS.gene051025:CDS |
| AAAGTGTTGCTATTATGAGC+TGG | 0.619013 | 8.3:+68874210 | None:intergenic |
| TTCAGGTTCAGCTTGCAAAG+TGG | 0.619399 | 8.3:+68874486 | None:intergenic |
| TTGGTGGACATGAGATCCCA+TGG | 0.620137 | 8.3:+68874001 | None:intergenic |
| TCGATGTTACATAATGCCAA+TGG | 0.625002 | 8.3:+68872889 | None:intergenic |
| AAATTGGAGCTCAAGTGAAG+AGG | 0.625563 | 8.3:-68872773 | MS.gene051025:CDS |
| CATGAATTGAGGGTGGCTCG+AGG | 0.660421 | 8.3:+68871619 | None:intergenic |
| CGTGTGACATCTTGAAGTTG+TGG | 0.666558 | 8.3:+68872966 | None:intergenic |
| ACAGTGCTAGAGCTTTCCAT+GGG | 0.685719 | 8.3:-68874017 | MS.gene051025:CDS |
| TGGTATCCATGAATTGAGGG+TGG | 0.689067 | 8.3:+68871612 | None:intergenic |
| TAAAGACTTGACAAACTCAG+AGG | 0.691687 | 8.3:+68874458 | None:intergenic |
| TTACACAGAAGTGATTCATG+AGG | 0.693684 | 8.3:-68873034 | MS.gene051025:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATAATAATAAAAAGTT+TGG | + | chr8.3:68872324-68872343 | None:intergenic | 10.0% |
| !! | TAACAATAATAAACAATCTA+TGG | + | chr8.3:68874142-68874161 | None:intergenic | 15.0% |
| !!! | AATTTTATTAATTCAACAAC+TGG | - | chr8.3:68872984-68873003 | MS.gene051025:CDS | 15.0% |
| !!! | CGATTAAATTTTTAAAACAT+TGG | + | chr8.3:68873542-68873561 | None:intergenic | 15.0% |
| !!! | GTTGAAAATATCTTTTAATT+AGG | + | chr8.3:68873805-68873824 | None:intergenic | 15.0% |
| !! | AACTTTATGAGAAATAGATT+TGG | + | chr8.3:68873992-68874011 | None:intergenic | 20.0% |
| !! | ATTTAATCGAAAAGTTCAAT+TGG | - | chr8.3:68873553-68873572 | MS.gene051025:intron | 20.0% |
| !! | TGTTAATGATAGTTTACTAA+TGG | - | chr8.3:68874157-68874176 | MS.gene051025:CDS | 20.0% |
| !!! | AATCTATTTCTCATAAAGTT+TGG | - | chr8.3:68873992-68874011 | MS.gene051025:CDS | 20.0% |
| !!! | ACATTATTGATATTTTCAAG+TGG | + | chr8.3:68874059-68874078 | None:intergenic | 20.0% |
| !!! | CAATGAAAAAGTTGAAATTT+TGG | + | chr8.3:68872225-68872244 | None:intergenic | 20.0% |
| !!! | CATTTTTCTAAACTTCAATT+TGG | - | chr8.3:68873339-68873358 | MS.gene051025:intron | 20.0% |
| !!! | TTTTAAAACATTGGTTTGTA+AGG | + | chr8.3:68873533-68873552 | None:intergenic | 20.0% |
| ! | AGTACAGGAAAATTATACAT+AGG | - | chr8.3:68873778-68873797 | MS.gene051025:intron | 25.0% |
| ! | ATTGTAATTTGAATTGATGC+AGG | - | chr8.3:68873874-68873893 | MS.gene051025:intron | 25.0% |
| ! | TCAATGAAATCATCAACAAA+AGG | + | chr8.3:68871655-68871674 | None:intergenic | 25.0% |
| ! | TGTATAATGTACACTGTATA+TGG | + | chr8.3:68874441-68874460 | None:intergenic | 25.0% |
| !! | AAAGAGTTTTCCTTCTAAAT+GGG | - | chr8.3:68871885-68871904 | MS.gene051025:intron | 25.0% |
| !! | AATAAGAATCCTTCTTTTGT+TGG | + | chr8.3:68873075-68873094 | None:intergenic | 25.0% |
| !! | ACGATCCATATTTAATTTAG+AGG | + | chr8.3:68874262-68874281 | None:intergenic | 25.0% |
| !! | CGATCCATATTTAATTTAGA+GGG | + | chr8.3:68874261-68874280 | None:intergenic | 25.0% |
| !! | TGCATTCATCTTATTTGAAT+TGG | - | chr8.3:68873841-68873860 | MS.gene051025:intron | 25.0% |
| !! | TTTTGCAAATTATTACCAGT+GGG | - | chr8.3:68872583-68872602 | MS.gene051025:intron | 25.0% |
| !!! | AAAGTTTGGTTAGTTTACAA+TGG | - | chr8.3:68874006-68874025 | MS.gene051025:CDS | 25.0% |
| !!! | CTTTACTTAGGTTATTTTAG+CGG | - | chr8.3:68873597-68873616 | MS.gene051025:intron | 25.0% |
| !!! | TGATATTTTCAAGTGGAATT+TGG | + | chr8.3:68874052-68874071 | None:intergenic | 25.0% |
| AAATGGTATCCATGAATTGA+GGG | + | chr8.3:68874556-68874575 | None:intergenic | 30.0% | |
| AGATTTATGTGTAATGCACA+TGG | - | chr8.3:68874372-68874391 | MS.gene051025:CDS | 30.0% | |
| AGGAAATATCGAAAAGTTTG+AGG | - | chr8.3:68873418-68873437 | MS.gene051025:intron | 30.0% | |
| ATTAGCCCATGAATGAAAAT+TGG | - | chr8.3:68872845-68872864 | MS.gene051025:CDS | 30.0% | |
| CTTGAGTAGAGTTTATAAAG+AGG | - | chr8.3:68872635-68872654 | MS.gene051025:intron | 30.0% | |
| GAACATGTATAGCAAAAACA+AGG | - | chr8.3:68871606-68871625 | MS.gene051025:CDS | 30.0% | |
| GATTTATGTGTAATGCACAT+GGG | - | chr8.3:68874373-68874392 | MS.gene051025:CDS | 30.0% | |
| GTTAAAACCTTGTCATTAGA+TGG | + | chr8.3:68872901-68872920 | None:intergenic | 30.0% | |
| TAAATGGTATCCATGAATTG+AGG | + | chr8.3:68874557-68874576 | None:intergenic | 30.0% | |
| TAACCTAAGTAAAGAAAGTG+TGG | + | chr8.3:68873591-68873610 | None:intergenic | 30.0% | |
| TACCTGAATTTCGGTAAAAT+TGG | + | chr8.3:68873045-68873064 | None:intergenic | 30.0% | |
| TATTCAGAACCAACAAAAGA+AGG | - | chr8.3:68873063-68873082 | MS.gene051025:CDS | 30.0% | |
| TGGAACAACAAAGTATGATT+TGG | - | chr8.3:68873359-68873378 | MS.gene051025:intron | 30.0% | |
| TTAAAAATCAAACCTGCATC+AGG | + | chr8.3:68873675-68873694 | None:intergenic | 30.0% | |
| TTAGAAGGAAAACTCTTTCT+TGG | + | chr8.3:68871883-68871902 | None:intergenic | 30.0% | |
| TTAGTATCATTGTTAGTGTC+AGG | - | chr8.3:68872821-68872840 | MS.gene051025:CDS | 30.0% | |
| TTATGTAACATCGATAGCAA+TGG | - | chr8.3:68873282-68873301 | MS.gene051025:intron | 30.0% | |
| TTTAAGCAGAAAATGGATGA+GGG | - | chr8.3:68872030-68872049 | MS.gene051025:intron | 30.0% | |
| ! | CCATATTTAATTTAGAGGGT+GGG | + | chr8.3:68874257-68874276 | None:intergenic | 30.0% |
| ! | CTCTTCCAATTTTCATTCAT+GGG | + | chr8.3:68872853-68872872 | None:intergenic | 30.0% |
| ! | GAAAGAGTTTTCCTTCTAAA+TGG | - | chr8.3:68871884-68871903 | MS.gene051025:intron | 30.0% |
| ! | GTTTTGCAAATTATTACCAG+TGG | - | chr8.3:68872582-68872601 | MS.gene051025:intron | 30.0% |
| ! | TCAAAGTTCTTCTTCAAGTT+TGG | - | chr8.3:68872113-68872132 | MS.gene051025:intron | 30.0% |
| ! | TCCATATTTAATTTAGAGGG+TGG | + | chr8.3:68874258-68874277 | None:intergenic | 30.0% |
| ! | TCTCTTCCAATTTTCATTCA+TGG | + | chr8.3:68872854-68872873 | None:intergenic | 30.0% |
| !! | TAATGGCTTTAAGCAGAAAA+TGG | - | chr8.3:68872023-68872042 | MS.gene051025:intron | 30.0% |
| !!! | ATTTTCAAGTGGAATTTGGT+GGG | + | chr8.3:68874048-68874067 | None:intergenic | 30.0% |
| !!! | TATTTTCAAGTGGAATTTGG+TGG | + | chr8.3:68874049-68874068 | None:intergenic | 30.0% |
| AAGAAGCAAAAATCCAAGCA+TGG | - | chr8.3:68873907-68873926 | MS.gene051025:intron | 35.0% | |
| AAGGAAAACTCTTTCTTGGA+AGG | + | chr8.3:68871879-68871898 | None:intergenic | 35.0% | |
| AATGGGATGATGCTGAAAAA+TGG | - | chr8.3:68871902-68871921 | MS.gene051025:intron | 35.0% | |
| ACTACAATAGAATGCATTGC+CGG | - | chr8.3:68874502-68874521 | MS.gene051025:CDS | 35.0% | |
| CAGACATAGTACTAAAAGGT+AGG | - | chr8.3:68872184-68872203 | MS.gene051025:intron | 35.0% | |
| CCAACAGACATAGTACTAAA+AGG | - | chr8.3:68872180-68872199 | MS.gene051025:intron | 35.0% | |
| CCCACCCTCTAAATTAAATA+TGG | - | chr8.3:68874254-68874273 | MS.gene051025:CDS | 35.0% | |
| CCTAAAGTATGTAGAATCCA+AGG | - | chr8.3:68874415-68874434 | MS.gene051025:CDS | 35.0% | |
| CCTTGGATTCTACATACTTT+AGG | + | chr8.3:68874418-68874437 | None:intergenic | 35.0% | |
| CTGAAGTAGTAAAGAAGGTA+AGG | + | chr8.3:68873752-68873771 | None:intergenic | 35.0% | |
| CTTTAAGCAGAAAATGGATG+AGG | - | chr8.3:68872029-68872048 | MS.gene051025:intron | 35.0% | |
| GAAAGCTGAAGTAGTAAAGA+AGG | + | chr8.3:68873757-68873776 | None:intergenic | 35.0% | |
| GAAATAGCCAGCAATATATC+CGG | + | chr8.3:68874524-68874543 | None:intergenic | 35.0% | |
| GAACCACACTTTCTTTACTT+AGG | - | chr8.3:68873585-68873604 | MS.gene051025:intron | 35.0% | |
| GAATTGCTGAATTTACACCA+TGG | + | chr8.3:68874315-68874334 | None:intergenic | 35.0% | |
| GAGGTTAAACACAAAGATGT+TGG | - | chr8.3:68873147-68873166 | MS.gene051025:intron | 35.0% | |
| GAGTAGAGTTTATAAAGAGG+AGG | - | chr8.3:68872638-68872657 | MS.gene051025:intron | 35.0% | |
| GAGTTATGTAGCACTTATAC+TGG | - | chr8.3:68872510-68872529 | MS.gene051025:intron | 35.0% | |
| GCTACATAACTCAGAATACA+AGG | + | chr8.3:68872502-68872521 | None:intergenic | 35.0% | |
| GGAACAAGACAATGTGATAA+TGG | - | chr8.3:68872006-68872025 | MS.gene051025:intron | 35.0% | |
| TAAAGACTTGACAAACTCAG+AGG | + | chr8.3:68871707-68871726 | None:intergenic | 35.0% | |
| TCGATGTTACATAATGCCAA+TGG | + | chr8.3:68873276-68873295 | None:intergenic | 35.0% | |
| TCTTCTTCTTCTAGCATTGT+TGG | - | chr8.3:68871847-68871866 | MS.gene051025:intron | 35.0% | |
| TGTCAATTCATCGACGAAAA+TGG | + | chr8.3:68873729-68873748 | None:intergenic | 35.0% | |
| TTACACAGAAGTGATTCATG+AGG | - | chr8.3:68873128-68873147 | MS.gene051025:CDS | 35.0% | |
| TTTAGTACTATGTCTGTTGG+TGG | + | chr8.3:68872180-68872199 | None:intergenic | 35.0% | |
| ! | AGAAGAATAAGTGCTGTCTT+AGG | - | chr8.3:68873499-68873518 | MS.gene051025:intron | 35.0% |
| ! | AGCCAATTTTACCGAAATTC+AGG | - | chr8.3:68873040-68873059 | MS.gene051025:CDS | 35.0% |
| ! | AGTAAAGAAAGTGTGGTTCA+CGG | + | chr8.3:68873584-68873603 | None:intergenic | 35.0% |
| ! | CCTTTTAGTACTATGTCTGT+TGG | + | chr8.3:68872183-68872202 | None:intergenic | 35.0% |
| !! | AAAGTGTTGCTATTATGAGC+TGG | + | chr8.3:68871955-68871974 | None:intergenic | 35.0% |
| !! | AGGGTTTTTCAGAGAAATCA+AGG | - | chr8.3:68872049-68872068 | MS.gene051025:intron | 35.0% |
| !! | GGGTTTTTCAGAGAAATCAA+GGG | - | chr8.3:68872050-68872069 | MS.gene051025:intron | 35.0% |
| !! | GGTTCTGAATACCTGAATTT+CGG | + | chr8.3:68873054-68873073 | None:intergenic | 35.0% |
| AAAATGCTAAAGCAGAAGCC+AGG | - | chr8.3:68873940-68873959 | MS.gene051025:intron | 40.0% | |
| AAATTGGAGCTCAAGTGAAG+AGG | - | chr8.3:68873389-68873408 | MS.gene051025:intron | 40.0% | |
| AAGCTGCTTGGACTGTTTAT+AGG | - | chr8.3:68874345-68874364 | MS.gene051025:CDS | 40.0% | |
| ACACTCTTAGGTCAAGTCAA+TGG | + | chr8.3:68872439-68872458 | None:intergenic | 40.0% | |
| AGAATCCTACCTATCCGATA+TGG | + | chr8.3:68872617-68872636 | None:intergenic | 40.0% | |
| AGCAGTCACGATAATAGTTG+CGG | - | chr8.3:68872922-68872941 | MS.gene051025:CDS | 40.0% | |
| AGGTCTAGTAATGTGGTCAA+AGG | + | chr8.3:68874219-68874238 | None:intergenic | 40.0% | |
| AGTGGGATTTAGTCCCATAT+CGG | - | chr8.3:68872600-68872619 | MS.gene051025:intron | 40.0% | |
| ATCGTCTGATCGTGATCTAA+CGG | - | chr8.3:68874277-68874296 | MS.gene051025:CDS | 40.0% | |
| ATGTACACTGTATATGGCCT+TGG | + | chr8.3:68874435-68874454 | None:intergenic | 40.0% | |
| CAAACTCAGAGGTTTCTTTC+AGG | + | chr8.3:68871696-68871715 | None:intergenic | 40.0% | |
| CACTCTTAGGTCAAGTCAAT+GGG | + | chr8.3:68872438-68872457 | None:intergenic | 40.0% | |
| CCTTACAAAACCAGCTTGTA+CGG | + | chr8.3:68872673-68872692 | None:intergenic | 40.0% | |
| GAAGAACTGAAGCTGAAAAG+TGG | + | chr8.3:68871823-68871842 | None:intergenic | 40.0% | |
| GAAGTTGTGGAACTTCCTAA+TGG | + | chr8.3:68873186-68873205 | None:intergenic | 40.0% | |
| GAATCCTACCTATCCGATAT+GGG | + | chr8.3:68872616-68872635 | None:intergenic | 40.0% | |
| GATTTAGTCCCATATCGGAT+AGG | - | chr8.3:68872605-68872624 | MS.gene051025:intron | 40.0% | |
| GGCAGCTATACAATCAGAAT+CGG | + | chr8.3:68873463-68873482 | None:intergenic | 40.0% | |
| TATCTGGCCATCTAATGACA+AGG | - | chr8.3:68872891-68872910 | MS.gene051025:CDS | 40.0% | |
| TCAGCATCATCCCATTTAGA+AGG | + | chr8.3:68871898-68871917 | None:intergenic | 40.0% | |
| TCTTCACTTGAGCTCCAATT+TGG | + | chr8.3:68873390-68873409 | None:intergenic | 40.0% | |
| TCTTGAGTTCGTGTTAGTGT+CGG | - | chr8.3:68872727-68872746 | MS.gene051025:CDS | 40.0% | |
| TGATTGTATAGCTGCCAGTT+GGG | - | chr8.3:68873467-68873486 | MS.gene051025:intron | 40.0% | |
| TGTGACAACCGTATACATGT+TGG | + | chr8.3:68872548-68872567 | None:intergenic | 40.0% | |
| TTAATTTAGAGGGTGGGTGA+GGG | + | chr8.3:68874251-68874270 | None:intergenic | 40.0% | |
| TTAGATGGCCAGATAGAAAG+AGG | + | chr8.3:68872886-68872905 | None:intergenic | 40.0% | |
| TTCAACCAACCTACACTCTT+AGG | + | chr8.3:68872451-68872470 | None:intergenic | 40.0% | |
| TTTGGAGGTTTATCCATGCT+TGG | + | chr8.3:68873923-68873942 | None:intergenic | 40.0% | |
| ! | AACGGTTTTCGATGTAACCA+TGG | - | chr8.3:68874295-68874314 | MS.gene051025:CDS | 40.0% |
| ! | AAGCTCTAGCACTGTTATTG+TGG | + | chr8.3:68872140-68872159 | None:intergenic | 40.0% |
| ! | CTACTTCAGCTTTCAAGTAC+AGG | - | chr8.3:68873763-68873782 | MS.gene051025:intron | 40.0% |
| ! | CTTCTGCTTTAGCATTTTGG+AGG | + | chr8.3:68873938-68873957 | None:intergenic | 40.0% |
| ! | GAGTCTTCTGTTTTCTGCAT+TGG | + | chr8.3:68871743-68871762 | None:intergenic | 40.0% |
| ! | GCTGTTTCATCTTCAGAATC+TGG | - | chr8.3:68871985-68872004 | MS.gene051025:intron | 40.0% |
| ! | TCTGCATTGGTGTTTGAAAC+TGG | + | chr8.3:68871730-68871749 | None:intergenic | 40.0% |
| ! | TGGCTTCTGCTTTAGCATTT+TGG | + | chr8.3:68873941-68873960 | None:intergenic | 40.0% |
| ! | TTGACTTGACCTAAGAGTGT+AGG | - | chr8.3:68872439-68872458 | MS.gene051025:intron | 40.0% |
| ! | TTTAATTTAGAGGGTGGGTG+AGG | + | chr8.3:68874252-68874271 | None:intergenic | 40.0% |
| !! | ATGATTTGGTTGCGCCAAAT+TGG | - | chr8.3:68873373-68873392 | MS.gene051025:intron | 40.0% |
| !!! | TACCTCAAGCTTTTTTGACC+TGG | + | chr8.3:68873961-68873980 | None:intergenic | 40.0% |
| AACAGTGCTAGAGCTTTCCA+TGG | - | chr8.3:68872144-68872163 | MS.gene051025:intron | 45.0% | |
| AAGCTGAAAAGTGGTCTACC+AGG | + | chr8.3:68871814-68871833 | None:intergenic | 45.0% | |
| ACAGTGCTAGAGCTTTCCAT+GGG | - | chr8.3:68872145-68872164 | MS.gene051025:intron | 45.0% | |
| ACCGTATACATGTTGGACAC+CGG | + | chr8.3:68872541-68872560 | None:intergenic | 45.0% | |
| AGCCAGGTCAAAAAAGCTTG+AGG | - | chr8.3:68873956-68873975 | MS.gene051025:intron | 45.0% | |
| CCAGATAGAAAGAGGAAGCT+GGG | + | chr8.3:68872878-68872897 | None:intergenic | 45.0% | |
| CCCTGTGACATCAATTGTGT+CGG | - | chr8.3:68872703-68872722 | MS.gene051025:CDS | 45.0% | |
| CCGACACAATTGATGTCACA+GGG | + | chr8.3:68872706-68872725 | None:intergenic | 45.0% | |
| CCTGTGACATCAATTGTGTC+GGG | - | chr8.3:68872704-68872723 | MS.gene051025:CDS | 45.0% | |
| CGTGTGACATCTTGAAGTTG+TGG | + | chr8.3:68873199-68873218 | None:intergenic | 45.0% | |
| CTCAAGTGAAGAGGAGGAAA+AGG | - | chr8.3:68873398-68873417 | MS.gene051025:intron | 45.0% | |
| CTGATTGTATAGCTGCCAGT+TGG | - | chr8.3:68873466-68873485 | MS.gene051025:intron | 45.0% | |
| CTGCTTGGACTGTTTATAGG+TGG | - | chr8.3:68874348-68874367 | MS.gene051025:CDS | 45.0% | |
| CTTGAGTTCGTGTTAGTGTC+GGG | - | chr8.3:68872728-68872747 | MS.gene051025:CDS | 45.0% | |
| GAGGTTGAGGTCTAGTAATG+TGG | + | chr8.3:68874226-68874245 | None:intergenic | 45.0% | |
| GATATGGGACTAAATCCCAC+TGG | + | chr8.3:68872601-68872620 | None:intergenic | 45.0% | |
| GGCACAGAAATGACTCCATT+AGG | - | chr8.3:68873168-68873187 | MS.gene051025:intron | 45.0% | |
| GTGTAATGCACATGGGTCAT+GGG | - | chr8.3:68874380-68874399 | MS.gene051025:CDS | 45.0% | |
| TAGTCCCATATCGGATAGGT+AGG | - | chr8.3:68872609-68872628 | MS.gene051025:intron | 45.0% | |
| TCCGGTGTCCAACATGTATA+CGG | - | chr8.3:68872537-68872556 | MS.gene051025:intron | 45.0% | |
| TGCATTGCCGGATATATTGC+TGG | - | chr8.3:68874514-68874533 | MS.gene051025:CDS | 45.0% | |
| TGGTATCCATGAATTGAGGG+TGG | + | chr8.3:68874553-68874572 | None:intergenic | 45.0% | |
| TGTGTAATGCACATGGGTCA+TGG | - | chr8.3:68874379-68874398 | MS.gene051025:CDS | 45.0% | |
| ! | CAAGTGGAATTTGGTGGGAT+GGG | + | chr8.3:68874043-68874062 | None:intergenic | 45.0% |
| ! | CTTGACCTAAGAGTGTAGGT+TGG | - | chr8.3:68872443-68872462 | MS.gene051025:intron | 45.0% |
| ! | TCAAGTGGAATTTGGTGGGA+TGG | + | chr8.3:68874044-68874063 | None:intergenic | 45.0% |
| ! | TTCAGGTTCAGCTTGCAAAG+TGG | + | chr8.3:68871679-68871698 | None:intergenic | 45.0% |
| !! | ACCTACTAGCAGGAGTGTTA+TGG | + | chr8.3:68873248-68873267 | None:intergenic | 45.0% |
| !!! | CCGTACAAGCTGGTTTTGTA+AGG | - | chr8.3:68872670-68872689 | MS.gene051025:CDS | 45.0% |
| AACACTCCTGCTAGTAGGTC+AGG | - | chr8.3:68873249-68873268 | MS.gene051025:intron | 50.0% | |
| AATGGTCCTGACCTACTAGC+AGG | + | chr8.3:68873258-68873277 | None:intergenic | 50.0% | |
| AGCACTTATACTGGCGTGTC+CGG | - | chr8.3:68872519-68872538 | MS.gene051025:intron | 50.0% | |
| AGTGGTCTACCAGGTGTAGA+AGG | + | chr8.3:68871805-68871824 | None:intergenic | 50.0% | |
| ATCAAACCTGCATCAGGTCG+AGG | + | chr8.3:68873669-68873688 | None:intergenic | 50.0% | |
| CAAAACCAGCTTGTACGGTG+AGG | + | chr8.3:68872668-68872687 | None:intergenic | 50.0% | |
| CCCAGCTTCCTCTTTCTATC+TGG | - | chr8.3:68872875-68872894 | MS.gene051025:CDS | 50.0% | |
| CCCGACACAATTGATGTCAC+AGG | + | chr8.3:68872707-68872726 | None:intergenic | 50.0% | |
| CTAGAAGCTCCTTCTACACC+TGG | - | chr8.3:68871793-68871812 | MS.gene051025:intron | 50.0% | |
| CTTCTCATCGTCTTCCCAAC+TGG | + | chr8.3:68873484-68873503 | None:intergenic | 50.0% | |
| GCAGGCGATGAACTCTTGAA+TGG | + | chr8.3:68873222-68873241 | None:intergenic | 50.0% | |
| GCCAGATAGAAAGAGGAAGC+TGG | + | chr8.3:68872879-68872898 | None:intergenic | 50.0% | |
| GCCATAACACTCCTGCTAGT+AGG | - | chr8.3:68873244-68873263 | MS.gene051025:intron | 50.0% | |
| TCACTCTTTCGCAAGCTGCT+TGG | - | chr8.3:68874333-68874352 | MS.gene051025:CDS | 50.0% | |
| TGCTAGTAGGTCAGGACCAT+TGG | - | chr8.3:68873257-68873276 | MS.gene051025:intron | 50.0% | |
| TTGGAGCTCAAGTGAAGAGG+AGG | - | chr8.3:68873392-68873411 | MS.gene051025:intron | 50.0% | |
| ! | TTGGTGGACATGAGATCCCA+TGG | + | chr8.3:68872164-68872183 | None:intergenic | 50.0% |
| CATGAATTGAGGGTGGCTCG+AGG | + | chr8.3:68874546-68874565 | None:intergenic | 55.0% | |
| CTCGAGCCACCCTCAATTCA+TGG | - | chr8.3:68874544-68874563 | MS.gene051025:CDS | 55.0% | |
| GTTGAACCTCGACCTGATGC+AGG | - | chr8.3:68873660-68873679 | MS.gene051025:intron | 55.0% | |
| GCACTCCTCACCGTACAAGC+TGG | - | chr8.3:68872660-68872679 | MS.gene051025:intron | 60.0% | |
| GTGGGTGAGGGTAGAGGTTG+AGG | + | chr8.3:68874239-68874258 | None:intergenic | 60.0% | |
| TAGAGGGTGGGTGAGGGTAG+AGG | + | chr8.3:68874245-68874264 | None:intergenic | 60.0% | |
| !! | GCAGGAGTGTTATGGCGCGC+AGG | + | chr8.3:68873240-68873259 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 68871604 | 68874580 | 68871604 | ID=MS.gene051025 |
| chr8.3 | mRNA | 68871604 | 68874580 | 68871604 | ID=MS.gene051025.t1;Parent=MS.gene051025 |
| chr8.3 | exon | 68873983 | 68874580 | 68873983 | ID=MS.gene051025.t1.exon1;Parent=MS.gene051025.t1 |
| chr8.3 | CDS | 68873983 | 68874580 | 68873983 | ID=cds.MS.gene051025.t1;Parent=MS.gene051025.t1 |
| chr8.3 | exon | 68872664 | 68873165 | 68872664 | ID=MS.gene051025.t1.exon2;Parent=MS.gene051025.t1 |
| chr8.3 | CDS | 68872664 | 68873165 | 68872664 | ID=cds.MS.gene051025.t1;Parent=MS.gene051025.t1 |
| chr8.3 | exon | 68872207 | 68872288 | 68872207 | ID=MS.gene051025.t1.exon3;Parent=MS.gene051025.t1 |
| chr8.3 | CDS | 68872207 | 68872288 | 68872207 | ID=cds.MS.gene051025.t1;Parent=MS.gene051025.t1 |
| chr8.3 | exon | 68871604 | 68871672 | 68871604 | ID=MS.gene051025.t1.exon4;Parent=MS.gene051025.t1 |
| chr8.3 | CDS | 68871604 | 68871672 | 68871604 | ID=cds.MS.gene051025.t1;Parent=MS.gene051025.t1 |
| Gene Sequence |
| Protein sequence |
