AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81052


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81052.t1 MTR_8g023490 99.123 456 4 0 1 456 87 542 0.0 944
MS.gene81052.t1 MTR_8g023490 99.246 398 3 0 1 398 87 484 0.0 825
MS.gene81052.t1 MTR_2g006810 75.652 115 24 2 165 278 502 613 4.68e-44 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81052.t1 AT1G17270 67.171 463 141 6 1 456 106 564 0.0 648
MS.gene81052.t1 AT1G17270 67.171 463 141 6 1 456 106 564 0.0 648
MS.gene81052.t1 AT5G50420 68.094 467 132 7 1 456 106 566 0.0 638
MS.gene81052.t1 AT1G53770 65.584 462 143 5 1 456 112 563 0.0 634
MS.gene81052.t1 AT1G53770 60.400 500 144 6 1 456 112 601 0.0 612

Find 99 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCATATTAATAAATGTTT+AGG 0.213341 8.4:-71432606 MS.gene81052:CDS
TTAGTTGCTATTTGTGTTTC+CGG 0.216242 8.4:-71432750 MS.gene81052:CDS
TTTGCCTCAACCTTGTTATT+TGG 0.238205 8.4:-71432499 MS.gene81052:CDS
ATTGATCCTGAATTCAATTT+CGG 0.284521 8.4:-71432876 MS.gene81052:CDS
GGCGATTCTGAACAGGGTTT+TGG 0.289374 8.4:-71432679 MS.gene81052:CDS
GAAGTTGGATGGGTTGGGTT+TGG 0.289769 8.4:-71432460 MS.gene81052:CDS
ATCATATTAATAAATGTTTA+GGG 0.291964 8.4:-71432605 MS.gene81052:CDS
AAGTTGGATGGGTTGGGTTT+GGG 0.298746 8.4:-71432459 MS.gene81052:CDS
TATTGAATGGAATCCTAAAA+AGG 0.306443 8.4:-71432781 MS.gene81052:CDS
GAATTTCCGAAATTGAATTC+AGG 0.320671 8.4:+71432870 None:intergenic
TCTTCAATTAGCTTAGGGTT+AGG 0.344093 8.4:+71432984 None:intergenic
GAGGTAAATGGCGCGTAATT+CGG 0.355551 8.4:+71433067 None:intergenic
TGAGTAAACCTAAGGCTGTT+TGG 0.356001 8.4:-71432434 MS.gene81052:CDS
GAAAACTGTTCAGGATGTTA+TGG 0.370308 8.4:-71432382 MS.gene81052:CDS
GAGTAAACCTAAGGCTGTTT+GGG 0.376187 8.4:-71432433 MS.gene81052:CDS
CTTCAATTAGCTTAGGGTTA+GGG 0.381882 8.4:+71432985 None:intergenic
CACGCTAGACATGGCACATA+TGG 0.383655 8.4:+71430144 None:intergenic
CCATGTCTAGCGTGTTCATT+GGG 0.389338 8.4:-71430135 MS.gene81052:CDS
GCTGAGCAGTAAGCAAAATA+AGG 0.389924 8.4:+71432229 None:intergenic
TTCTTATGATGATGATGTTA+TGG 0.392013 8.4:-71432352 MS.gene81052:CDS
TTGAAGAAGTTGGATGGGTT+GGG 0.392285 8.4:-71432465 MS.gene81052:CDS
CGATTTATTCAGACATTCCT+TGG 0.392434 8.4:-71432207 MS.gene81052:CDS
GAAATTCAAATTTCAATGTT+GGG 0.393322 8.4:-71432854 MS.gene81052:CDS
TCATCCTCCCAAACAGCCTT+AGG 0.396707 8.4:+71432426 None:intergenic
TCCAAAGAAGAAAACTGTTC+AGG 0.400163 8.4:-71432391 MS.gene81052:CDS
TTCAGATCTTCAATTAGCTT+AGG 0.405765 8.4:+71432978 None:intergenic
GGAAATTCAAATTTCAATGT+TGG 0.407138 8.4:-71432855 MS.gene81052:CDS
AGTCTGTTCCACTTGTAATT+CGG 0.409574 8.4:-71431482 MS.gene81052:CDS
GTAAGCAAAATAAGGCGATT+AGG 0.416760 8.4:+71432237 None:intergenic
GTTGAAGAAGTTGGATGGGT+TGG 0.422746 8.4:-71432466 MS.gene81052:CDS
CTGTTGAATCCACATAGAAC+AGG 0.430746 8.4:-71432906 MS.gene81052:CDS
TCAGATCTTCAATTAGCTTA+GGG 0.433199 8.4:+71432979 None:intergenic
TGATAATCAACTTTAGAACT+TGG 0.433498 8.4:+71432651 None:intergenic
AATGGGATGCTTTGTTGTAC+AGG 0.436207 8.4:-71431437 MS.gene81052:CDS
TTGTTGGCGTAAGAGGTAAA+TGG 0.438432 8.4:+71433055 None:intergenic
CAATCTGCTGCTTGAGGGAT+GGG 0.440779 8.4:+71431612 None:intergenic
AGCGTGTTCATTGGGGCACC+TGG 0.448301 8.4:-71430127 MS.gene81052:CDS
GATGCAGCTGAAAGTGAAAC+TGG 0.457579 8.4:-71431537 MS.gene81052:CDS
GTTGTTGTTGTTGGCGTAAG+AGG 0.459424 8.4:+71433048 None:intergenic
TTGAGAGACGTTGTTGTTGT+TGG 0.460441 8.4:+71433039 None:intergenic
GCCATGTCTAGCGTGTTCAT+TGG 0.460806 8.4:-71430136 MS.gene81052:CDS
ATCCGTAGAAAGATATATGA+TGG 0.464180 8.4:+71431557 None:intergenic
TTGTACAGGCATCATATTGA+GGG 0.469353 8.4:-71431423 MS.gene81052:CDS
GCATGAATGGGTTATGCAAC+CGG 0.476154 8.4:-71432298 MS.gene81052:CDS
TGGTGAGAGGTTGAAGAAGT+TGG 0.481349 8.4:-71432475 MS.gene81052:CDS
CCTCAACCTTGTTATTTGGA+TGG 0.483341 8.4:-71432495 MS.gene81052:CDS
CTTGCGGCTGAGAAAGGACT+GGG 0.485227 8.4:-71430083 MS.gene81052:CDS
ATGCTGAAGTGGAGCATGAA+TGG 0.486444 8.4:-71432311 MS.gene81052:CDS
CAAGATGTCTTCAGTGAAAG+TGG 0.493024 8.4:+71430102 None:intergenic
ACTGAAGGTGGAAGCTATGT+TGG 0.493826 8.4:-71430173 MS.gene81052:intron
CACTTGTAATTCGGCCAGCT+CGG 0.495746 8.4:-71431473 MS.gene81052:CDS
CAAAGAGGAAAACTATTGAA+TGG 0.498658 8.4:-71432794 MS.gene81052:CDS
GTCTTGCAGTGATGAGCAAT+CGG 0.502179 8.4:+71432270 None:intergenic
AGACATCTTGCGGCTGAGAA+AGG 0.504340 8.4:-71430089 MS.gene81052:CDS
ATTACATTCCCTGTTCTATG+TGG 0.511766 8.4:+71432897 None:intergenic
CAGTCACTGATTGTGCTGAA+TGG 0.512195 8.4:-71431507 MS.gene81052:CDS
TGCTGAAGTGGAGCATGAAT+GGG 0.512626 8.4:-71432310 MS.gene81052:CDS
TTGATCAGAGTTTGTCAAAG+AGG 0.522693 8.4:-71432809 MS.gene81052:CDS
CAAATGGTTCGACATTTGAC+CGG 0.524476 8.4:+71432731 None:intergenic
TTATTCAGACATTCCTTGGA+AGG 0.535294 8.4:-71432203 MS.gene81052:CDS
AAGATGCAATCTGCTGCTTG+AGG 0.535947 8.4:+71431606 None:intergenic
GCAATCTGCTGCTTGAGGGA+TGG 0.535959 8.4:+71431611 None:intergenic
AGATGCAATCTGCTGCTTGA+GGG 0.537297 8.4:+71431607 None:intergenic
TTTCGCGGCGATTCTGAACA+GGG 0.537645 8.4:-71432685 MS.gene81052:CDS
AGCAGCAGATTGCATCTTGA+GGG 0.538084 8.4:-71431601 MS.gene81052:CDS
TCATATTGAGGGAGATTCAC+AGG 0.543571 8.4:-71431412 MS.gene81052:intron
CAATATTCGGTTCTTCACCT+TGG 0.544512 8.4:+71430029 None:intergenic
GTTGTACAGGCATCATATTG+AGG 0.546833 8.4:-71431424 MS.gene81052:CDS
TAAGGCTGTTTGGGAGGATG+AGG 0.546866 8.4:-71432424 MS.gene81052:CDS
ACCCATCATATATCTTTCTA+CGG 0.548743 8.4:-71431559 MS.gene81052:CDS
GATGATGATGTTATGGCGAT+TGG 0.552086 8.4:-71432345 MS.gene81052:CDS
TCTTGCGGCTGAGAAAGGAC+TGG 0.552823 8.4:-71430084 MS.gene81052:CDS
CATGAATGGGTTATGCAACC+GGG 0.566495 8.4:-71432297 MS.gene81052:CDS
CTGATCGGAAGAGTTGAAAA+CGG 0.566837 8.4:+71433016 None:intergenic
AAGCAATGAAGTTCCTTCCA+AGG 0.569377 8.4:+71432190 None:intergenic
GCATCTTGAGGGTGATTGAG+AGG 0.569675 8.4:-71431590 MS.gene81052:CDS
TGATGAGCAATCGGTCCACC+CGG 0.569754 8.4:+71432279 None:intergenic
GAGAGGTTGAAGAAGTTGGA+TGG 0.570927 8.4:-71432471 MS.gene81052:CDS
CTCTCACCATCCAAATAACA+AGG 0.576142 8.4:+71432489 None:intergenic
CCCAATGAACACGCTAGACA+TGG 0.579689 8.4:+71430135 None:intergenic
AAGCAGCAGATTGCATCTTG+AGG 0.583857 8.4:-71431602 MS.gene81052:CDS
AGAGGTTGAAGAAGTTGGAT+GGG 0.586242 8.4:-71432470 MS.gene81052:CDS
TTTGGGTATGAGTAAACCTA+AGG 0.587132 8.4:-71432442 MS.gene81052:CDS
CTTGTTATTTGGATGGTGAG+AGG 0.598699 8.4:-71432488 MS.gene81052:CDS
CCATCCAAATAACAAGGTTG+AGG 0.599350 8.4:+71432495 None:intergenic
TCTTCAGTGAAAGTGGAACC+AGG 0.609539 8.4:+71430109 None:intergenic
TAAACCTAAGGCTGTTTGGG+AGG 0.614046 8.4:-71432430 MS.gene81052:CDS
CATCTTGAGGGTGATTGAGA+GGG 0.616500 8.4:-71431589 MS.gene81052:CDS
TCCGTAGAAAGATATATGAT+GGG 0.622070 8.4:+71431558 None:intergenic
CTTTCACTGAAGACATCTTG+CGG 0.622202 8.4:-71430099 MS.gene81052:CDS
CGAGCTGGCCGAATTACAAG+TGG 0.629533 8.4:+71431474 None:intergenic
AATCTGCTGCTTGAGGGATG+GGG 0.632784 8.4:+71431613 None:intergenic
TGTGATGAGTATCTTTGCCA+AGG 0.635336 8.4:-71430046 MS.gene81052:CDS
CATGTCTAGCGTGTTCATTG+GGG 0.682670 8.4:-71430134 MS.gene81052:CDS
TGTTGAATCCACATAGAACA+GGG 0.688035 8.4:-71432905 MS.gene81052:CDS
TGAAGAACCGAATATTGTAG+CGG 0.689587 8.4:-71430023 MS.gene81052:CDS
GAATGGGTTATGCAACCGGG+TGG 0.697233 8.4:-71432294 MS.gene81052:CDS
TTTGGGAGGATGAGGATACG+AGG 0.712720 8.4:-71432416 MS.gene81052:CDS
TTGCGGCTGAGAAAGGACTG+GGG 0.724371 8.4:-71430082 MS.gene81052:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAAATTGTTTAAAAAT+TGG + chr8.4:71432820-71432839 None:intergenic 10.0%
!! ATCATATTAATAAATGTTTA+GGG - chr8.4:71430484-71430503 MS.gene81052:intron 10.0%
!! GATCATATTAATAAATGTTT+AGG - chr8.4:71430483-71430502 MS.gene81052:intron 15.0%
!! TTAATTTCTCATAAGATTAT+GGG - chr8.4:71430982-71431001 MS.gene81052:intron 15.0%
!!! ACTAAAAATTTATCCTTTTT+AGG + chr8.4:71430324-71430343 None:intergenic 15.0%
!!! TTTAATTTCTCATAAGATTA+TGG - chr8.4:71430981-71431000 MS.gene81052:intron 15.0%
!! ATTTACAAATGAAAGTTTCA+TGG - chr8.4:71431797-71431816 MS.gene81052:intron 20.0%
!! GAAATTCAAATTTCAATGTT+GGG - chr8.4:71430235-71430254 MS.gene81052:intron 20.0%
!! TAATTTCTCATAAGATTATG+GGG - chr8.4:71430983-71431002 MS.gene81052:intron 20.0%
!! TACTCTCTTTCAATTTATTT+CGG - chr8.4:71432868-71432887 MS.gene81052:CDS 20.0%
!! TTTACAAATGAAAGTTTCAT+GGG - chr8.4:71431798-71431817 MS.gene81052:intron 20.0%
!! TTTCATAGTGGTTTAAAAAT+TGG + chr8.4:71432788-71432807 None:intergenic 20.0%
!!! AATCAGTATTTTGTAAATAC+AGG + chr8.4:71431892-71431911 None:intergenic 20.0%
!!! TTTTATAACATTTTACTGTC+AGG - chr8.4:71432145-71432164 MS.gene81052:intron 20.0%
! AAAAGTTATGCATGCATATA+AGG - chr8.4:71431336-71431355 MS.gene81052:intron 25.0%
! ACTAAGCTTCAAACTTAAAA+GGG + chr8.4:71432092-71432111 None:intergenic 25.0%
! ATATCAAACCAAATTTGACA+GGG + chr8.4:71432591-71432610 None:intergenic 25.0%
! ATTGATCCTGAATTCAATTT+CGG - chr8.4:71430213-71430232 MS.gene81052:intron 25.0%
! GAATTTATTGTTGTAAGTTC+TGG - chr8.4:71432032-71432051 MS.gene81052:intron 25.0%
! GGAAATTCAAATTTCAATGT+TGG - chr8.4:71430234-71430253 MS.gene81052:intron 25.0%
! TAAACCAGAAAAAGGAATAA+AGG + chr8.4:71430965-71430984 None:intergenic 25.0%
! TACTAAGCTTCAAACTTAAA+AGG + chr8.4:71432093-71432112 None:intergenic 25.0%
! TATGAGCCTACAAAAAAAAT+CGG + chr8.4:71432624-71432643 None:intergenic 25.0%
! TATTGAATGGAATCCTAAAA+AGG - chr8.4:71430308-71430327 MS.gene81052:intron 25.0%
! TGAGAAATTAAACCAGAAAA+AGG + chr8.4:71430973-71430992 None:intergenic 25.0%
!! GAATTTTCGAATGTTAAGAA+GGG - chr8.4:71430531-71430550 MS.gene81052:intron 25.0%
!! GCTTTTCTAAACAAATCAAA+TGG + chr8.4:71430377-71430396 None:intergenic 25.0%
!! TAGCAAATTTGAAATCAAAG+CGG - chr8.4:71431133-71431152 MS.gene81052:intron 25.0%
!! TATGAATATTTTCACACTGA+AGG - chr8.4:71432901-71432920 MS.gene81052:CDS 25.0%
!! TGAATTTTCGAATGTTAAGA+AGG - chr8.4:71430530-71430549 MS.gene81052:intron 25.0%
!! TTAAACTTAAATAGAGTACC+TGG - chr8.4:71431736-71431755 MS.gene81052:intron 25.0%
!! TTCTTATGATGATGATGTTA+TGG - chr8.4:71430737-71430756 MS.gene81052:intron 25.0%
!!! AAGTTGATAACTTTGTTAGT+CGG + chr8.4:71432496-71432515 None:intergenic 25.0%
!!! AGTTGTTTTGTTTCATTTCA+TGG - chr8.4:71431286-71431305 MS.gene81052:intron 25.0%
!!! GTGTTTACAAGTTGTTATTT+TGG + chr8.4:71432474-71432493 None:intergenic 25.0%
!!! TGATAATCAACTTTAGAACT+TGG + chr8.4:71430441-71430460 None:intergenic 25.0%
AATAAATTCAAGCGAAAACC+AGG + chr8.4:71432021-71432040 None:intergenic 30.0%
AATGGATAAGTAAGCCAATA+TGG + chr8.4:71431416-71431435 None:intergenic 30.0%
ACCCATCATATATCTTTCTA+CGG - chr8.4:71431530-71431549 MS.gene81052:CDS 30.0%
AGATACTTAAACTTATTCCC+AGG + chr8.4:71432257-71432276 None:intergenic 30.0%
AGTCAACAACTCAAAATCTT+TGG + chr8.4:71431171-71431190 None:intergenic 30.0%
ATAAATTCAAGCGAAAACCA+GGG + chr8.4:71432020-71432039 None:intergenic 30.0%
ATCCGTAGAAAGATATATGA+TGG + chr8.4:71431535-71431554 None:intergenic 30.0%
CAAAGAGGAAAACTATTGAA+TGG - chr8.4:71430295-71430314 MS.gene81052:intron 30.0%
CATATCAAACCAAATTTGAC+AGG + chr8.4:71432592-71432611 None:intergenic 30.0%
CATTACTGCAAACATGAAAA+TGG + chr8.4:71431434-71431453 None:intergenic 30.0%
GAATTCATTGTGTCTATTCT+AGG - chr8.4:71431857-71431876 MS.gene81052:intron 30.0%
GAATTTCCGAAATTGAATTC+AGG + chr8.4:71430222-71430241 None:intergenic 30.0%
GCACATGAAAAAAATAAGCA+AGG + chr8.4:71431715-71431734 None:intergenic 30.0%
GTAAGTTAGTAGAAGTTAGT+TGG + chr8.4:71432520-71432539 None:intergenic 30.0%
GTAATCCTAATGATCAGATA+TGG + chr8.4:71431776-71431795 None:intergenic 30.0%
GTCTTTAAATATCCCTTGAA+TGG + chr8.4:71432441-71432460 None:intergenic 30.0%
TCCGTAGAAAGATATATGAT+GGG + chr8.4:71431534-71431553 None:intergenic 30.0%
TGTGCAAAAAATTTCAGAGA+GGG + chr8.4:71432742-71432761 None:intergenic 30.0%
TTAATCTAACGCATAGATTC+AGG + chr8.4:71431055-71431074 None:intergenic 30.0%
TTTGTAAATTGTGACAGAAG+AGG + chr8.4:71431949-71431968 None:intergenic 30.0%
! AACATTTTACTGTCAGGAAA+AGG - chr8.4:71432151-71432170 MS.gene81052:intron 30.0%
! ACTACCTTTATTCCTTTTTC+TGG - chr8.4:71430958-71430977 MS.gene81052:intron 30.0%
! ACTTCATTGCTTTGCATTTT+CGG - chr8.4:71430910-71430929 MS.gene81052:intron 30.0%
! TCAGATCTTCAATTAGCTTA+GGG + chr8.4:71430113-71430132 None:intergenic 30.0%
! TCATTTTCCGCTACAATATT+CGG + chr8.4:71433076-71433095 None:intergenic 30.0%
! TGCTATTAAAGCTGATTCAA+CGG + chr8.4:71431118-71431137 None:intergenic 30.0%
! TTCAGATCTTCAATTAGCTT+AGG + chr8.4:71430114-71430133 None:intergenic 30.0%
! TTTTGTAGGCTCATAATGAA+AGG - chr8.4:71432629-71432648 MS.gene81052:CDS 30.0%
!! AGAAAAGCATATGTTTTTCG+CGG - chr8.4:71430389-71430408 MS.gene81052:intron 30.0%
!! CTGTCAAATTTGGTTTGATA+TGG - chr8.4:71432590-71432609 MS.gene81052:CDS 30.0%
!! TTAGTTGCTATTTGTGTTTC+CGG - chr8.4:71430339-71430358 MS.gene81052:intron 30.0%
!!! TAGTCACCGATTTTTTTTGT+AGG - chr8.4:71432615-71432634 MS.gene81052:CDS 30.0%
!!! TGATGTTTTTTATGCTGAAG+TGG - chr8.4:71430767-71430786 MS.gene81052:intron 30.0%
AAATATCCCTTGAATGGTAG+AGG + chr8.4:71432435-71432454 None:intergenic 35.0%
AAGTAAGCCAATATGGTAGA+GGG + chr8.4:71431409-71431428 None:intergenic 35.0%
AATATCCCTTGAATGGTAGA+GGG + chr8.4:71432434-71432453 None:intergenic 35.0%
AATTTGACAGGGATTCTGTA+AGG + chr8.4:71432580-71432599 None:intergenic 35.0%
ACCATCCATATCTGATCATT+AGG - chr8.4:71431768-71431787 MS.gene81052:intron 35.0%
AGAGAATTATCTAGCGTGAA+AGG + chr8.4:71432380-71432399 None:intergenic 35.0%
AGTCTGTTCCACTTGTAATT+CGG - chr8.4:71431607-71431626 MS.gene81052:CDS 35.0%
ATTACATTCCCTGTTCTATG+TGG + chr8.4:71430195-71430214 None:intergenic 35.0%
CAAAAAATTTCAGAGAGGGA+AGG + chr8.4:71432738-71432757 None:intergenic 35.0%
CGATTTATTCAGACATTCCT+TGG - chr8.4:71430882-71430901 MS.gene81052:intron 35.0%
CTGTGCAAAAAATTTCAGAG+AGG + chr8.4:71432743-71432762 None:intergenic 35.0%
CTTGCATATGTAGTCAAGAT+CGG - chr8.4:71431085-71431104 MS.gene81052:intron 35.0%
CTTTGTGTAATTCCCCAAAA+CGG - chr8.4:71432290-71432309 MS.gene81052:CDS 35.0%
GAAAACTGTTCAGGATGTTA+TGG - chr8.4:71430707-71430726 MS.gene81052:intron 35.0%
GTAAGCAAAATAAGGCGATT+AGG + chr8.4:71430855-71430874 None:intergenic 35.0%
GTTGGCACTTCATTCAAATT+CGG + chr8.4:71431227-71431246 None:intergenic 35.0%
TAAATTCAAGCGAAAACCAG+GGG + chr8.4:71432019-71432038 None:intergenic 35.0%
TAAGTAAGCCAATATGGTAG+AGG + chr8.4:71431410-71431429 None:intergenic 35.0%
TACAGAATCCCTGTCAAATT+TGG - chr8.4:71432580-71432599 MS.gene81052:CDS 35.0%
TCCAAAGAAGAAAACTGTTC+AGG - chr8.4:71430698-71430717 MS.gene81052:intron 35.0%
TCCTAATGATCAGATATGGA+TGG + chr8.4:71431772-71431791 None:intergenic 35.0%
TCGGAATTCAGCAGAAAAAT+GGG - chr8.4:71431635-71431654 MS.gene81052:CDS 35.0%
TGAAAGTTTCATGGGTAACT+TGG - chr8.4:71431806-71431825 MS.gene81052:intron 35.0%
TGAAGAACCGAATATTGTAG+CGG - chr8.4:71433066-71433085 MS.gene81052:CDS 35.0%
TGTTGAATCCACATAGAACA+GGG - chr8.4:71430184-71430203 MS.gene81052:intron 35.0%
TTATTCAGACATTCCTTGGA+AGG - chr8.4:71430886-71430905 MS.gene81052:intron 35.0%
TTGATCAGAGTTTGTCAAAG+AGG - chr8.4:71430280-71430299 MS.gene81052:intron 35.0%
TTGTACAGGCATCATATTGA+GGG - chr8.4:71431666-71431685 MS.gene81052:intron 35.0%
TTTGGGTATGAGTAAACCTA+AGG - chr8.4:71430647-71430666 MS.gene81052:intron 35.0%
TTTGTGTAATTCCCCAAAAC+GGG - chr8.4:71432291-71432310 MS.gene81052:CDS 35.0%
! AACTTAAAAGGGCCTTTTCA+AGG + chr8.4:71432081-71432100 None:intergenic 35.0%
! AAGGAAACTTTAAGAGCTGT+AGG - chr8.4:71432170-71432189 MS.gene81052:CDS 35.0%
! ACTCAATTCTATCCCGTTTT+GGG + chr8.4:71432306-71432325 None:intergenic 35.0%
! ACTTAAAAGGGCCTTTTCAA+GGG + chr8.4:71432080-71432099 None:intergenic 35.0%
! CTTCAATTAGCTTAGGGTTA+GGG + chr8.4:71430107-71430126 None:intergenic 35.0%
! GAATATTTTCACACTGAAGG+TGG - chr8.4:71432904-71432923 MS.gene81052:CDS 35.0%
! GGAAACAAGTTGAATACCAT+AGG + chr8.4:71432197-71432216 None:intergenic 35.0%
! TACTCAATTCTATCCCGTTT+TGG + chr8.4:71432307-71432326 None:intergenic 35.0%
! TCCTGAACAGTTTTCTTCTT+TGG + chr8.4:71430702-71430721 None:intergenic 35.0%
! TCTTCAATTAGCTTAGGGTT+AGG + chr8.4:71430108-71430127 None:intergenic 35.0%
! TCTTTTTCCCTCTACCATAT+TGG - chr8.4:71431399-71431418 MS.gene81052:intron 35.0%
! TTTTCATGGCTCATGAGTTA+TGG - chr8.4:71431251-71431270 MS.gene81052:intron 35.0%
!! AAAGAGAGCACTAAAATTGC+AGG + chr8.4:71431384-71431403 None:intergenic 35.0%
!! TTTGCCTCAACCTTGTTATT+TGG - chr8.4:71430590-71430609 MS.gene81052:intron 35.0%
!!! GACACGGTTTTTTGAAATTC+TGG - chr8.4:71430934-71430953 MS.gene81052:intron 35.0%
!!! GCGTAGAATTTTTTACTGCA+CGG - chr8.4:71431199-71431218 MS.gene81052:intron 35.0%
!!! GTTAGGGTTTTGATTCTGAT+CGG + chr8.4:71430091-71430110 None:intergenic 35.0%
AAACCACTATGAAAGCTGAC+TGG - chr8.4:71432794-71432813 MS.gene81052:CDS 40.0%
AAGCAATGAAGTTCCTTCCA+AGG + chr8.4:71430902-71430921 None:intergenic 40.0%
AGAGGTTGAAGAAGTTGGAT+GGG - chr8.4:71430619-71430638 MS.gene81052:intron 40.0%
AGATGATAACCTTCCACACA+AGG - chr8.4:71432334-71432353 MS.gene81052:CDS 40.0%
ATATCCCTTGAATGGTAGAG+GGG + chr8.4:71432433-71432452 None:intergenic 40.0%
ATGAGCCATGAAAATGCAGT+TGG + chr8.4:71431245-71431264 None:intergenic 40.0%
CAAATGGTTCGACATTTGAC+CGG + chr8.4:71430361-71430380 None:intergenic 40.0%
CAAGATGTCTTCAGTGAAAG+TGG + chr8.4:71432990-71433009 None:intergenic 40.0%
CAATATTCGGTTCTTCACCT+TGG + chr8.4:71433063-71433082 None:intergenic 40.0%
CAGATATGGATGGTGAACTA+AGG + chr8.4:71431762-71431781 None:intergenic 40.0%
CCATCCAAATAACAAGGTTG+AGG + chr8.4:71430597-71430616 None:intergenic 40.0%
CTCGGAATTCAGCAGAAAAA+TGG - chr8.4:71431634-71431653 MS.gene81052:CDS 40.0%
CTCTCACCATCCAAATAACA+AGG + chr8.4:71430603-71430622 None:intergenic 40.0%
CTGATCGGAAGAGTTGAAAA+CGG + chr8.4:71430076-71430095 None:intergenic 40.0%
CTGTTGAATCCACATAGAAC+AGG - chr8.4:71430183-71430202 MS.gene81052:intron 40.0%
CTTTCACTGAAGACATCTTG+CGG - chr8.4:71432990-71433009 MS.gene81052:CDS 40.0%
GAGTAAACCTAAGGCTGTTT+GGG - chr8.4:71430656-71430675 MS.gene81052:intron 40.0%
GCTGAGCAGTAAGCAAAATA+AGG + chr8.4:71430863-71430882 None:intergenic 40.0%
GTTGTACAGGCATCATATTG+AGG - chr8.4:71431665-71431684 MS.gene81052:intron 40.0%
TCATATTGAGGGAGATTCAC+AGG - chr8.4:71431677-71431696 MS.gene81052:intron 40.0%
TGAGTAAACCTAAGGCTGTT+TGG - chr8.4:71430655-71430674 MS.gene81052:intron 40.0%
TGCAAGGCTTAGACAACTAA+AGG + chr8.4:71432218-71432237 None:intergenic 40.0%
TGTGATGAGTATCTTTGCCA+AGG - chr8.4:71433043-71433062 MS.gene81052:CDS 40.0%
TTGTTGGCGTAAGAGGTAAA+TGG + chr8.4:71430037-71430056 None:intergenic 40.0%
TTTAAGAGCTGTAGGTCCTA+TGG - chr8.4:71432178-71432197 MS.gene81052:CDS 40.0%
! AAGTGCCAACTGCATTTTCA+TGG - chr8.4:71431237-71431256 MS.gene81052:intron 40.0%
! AATGGGATGCTTTGTTGTAC+AGG - chr8.4:71431652-71431671 MS.gene81052:intron 40.0%
! CTCAATTCTATCCCGTTTTG+GGG + chr8.4:71432305-71432324 None:intergenic 40.0%
! GATGATGATGTTATGGCGAT+TGG - chr8.4:71430744-71430763 MS.gene81052:intron 40.0%
! TTGAAGAAGTTGGATGGGTT+GGG - chr8.4:71430624-71430643 MS.gene81052:intron 40.0%
! TTGAGAGACGTTGTTGTTGT+TGG + chr8.4:71430053-71430072 None:intergenic 40.0%
!! CCTCAACCTTGTTATTTGGA+TGG - chr8.4:71430594-71430613 MS.gene81052:intron 40.0%
!! CTTAAAAGGGCCTTTTCAAG+GGG + chr8.4:71432079-71432098 None:intergenic 40.0%
!! CTTGTTATTTGGATGGTGAG+AGG - chr8.4:71430601-71430620 MS.gene81052:intron 40.0%
AAGCAGCAGATTGCATCTTG+AGG - chr8.4:71431487-71431506 MS.gene81052:CDS 45.0%
ACTGAAGGTGGAAGCTATGT+TGG - chr8.4:71432916-71432935 MS.gene81052:CDS 45.0%
AGCAGCAGATTGCATCTTGA+GGG - chr8.4:71431488-71431507 MS.gene81052:CDS 45.0%
ATCTTCCCCTCTACCATTCA+AGG - chr8.4:71432425-71432444 MS.gene81052:CDS 45.0%
ATGCTGAAGTGGAGCATGAA+TGG - chr8.4:71430778-71430797 MS.gene81052:intron 45.0%
CATCTTGAGGGTGATTGAGA+GGG - chr8.4:71431500-71431519 MS.gene81052:CDS 45.0%
CATGTCTAGCGTGTTCATTG+GGG - chr8.4:71432955-71432974 MS.gene81052:CDS 45.0%
CCATGTCTAGCGTGTTCATT+GGG - chr8.4:71432954-71432973 MS.gene81052:CDS 45.0%
GAGAGGTTGAAGAAGTTGGA+TGG - chr8.4:71430618-71430637 MS.gene81052:intron 45.0%
GAGGTAAATGGCGCGTAATT+CGG + chr8.4:71430025-71430044 None:intergenic 45.0%
GATGCAGCTGAAAGTGAAAC+TGG - chr8.4:71431552-71431571 MS.gene81052:CDS 45.0%
GTCTTGCAGTGATGAGCAAT+CGG + chr8.4:71430822-71430841 None:intergenic 45.0%
GTTGAAGAAGTTGGATGGGT+TGG - chr8.4:71430623-71430642 MS.gene81052:intron 45.0%
TAAACCTAAGGCTGTTTGGG+AGG - chr8.4:71430659-71430678 MS.gene81052:intron 45.0%
TAGTTGTCTAAGCCTTGCAG+CGG - chr8.4:71432219-71432238 MS.gene81052:CDS 45.0%
TCTTCAGTGAAAGTGGAACC+AGG + chr8.4:71432983-71433002 None:intergenic 45.0%
TCTTCCCCTCTACCATTCAA+GGG - chr8.4:71432426-71432445 MS.gene81052:CDS 45.0%
TGCTGAAGTGGAGCATGAAT+GGG - chr8.4:71430779-71430798 MS.gene81052:intron 45.0%
TGGTGAGAGGTTGAAGAAGT+TGG - chr8.4:71430614-71430633 MS.gene81052:intron 45.0%
! AAGATGCAATCTGCTGCTTG+AGG + chr8.4:71431486-71431505 None:intergenic 45.0%
! AGATGCAATCTGCTGCTTGA+GGG + chr8.4:71431485-71431504 None:intergenic 45.0%
! CAGTCACTGATTGTGCTGAA+TGG - chr8.4:71431582-71431601 MS.gene81052:CDS 45.0%
! GCTTTGCATTTTCGGAGACA+CGG - chr8.4:71430918-71430937 MS.gene81052:intron 45.0%
! GTTGTTGTTGTTGGCGTAAG+AGG + chr8.4:71430044-71430063 None:intergenic 45.0%
! TTTTCTGCTGAATTCCGAGC+TGG + chr8.4:71431633-71431652 None:intergenic 45.0%
!! AAGTTGGATGGGTTGGGTTT+GGG - chr8.4:71430630-71430649 MS.gene81052:intron 45.0%
!! ACAACTGTTGATAATGCCCC+TGG - chr8.4:71432000-71432019 MS.gene81052:intron 45.0%
!! CATGAATGGGTTATGCAACC+GGG - chr8.4:71430792-71430811 MS.gene81052:intron 45.0%
!! CCTTTTCAAGGGGAAAAAGG+GGG + chr8.4:71432069-71432088 None:intergenic 45.0%
!! GCATGAATGGGTTATGCAAC+CGG - chr8.4:71430791-71430810 MS.gene81052:intron 45.0%
!! GCCTTTTCAAGGGGAAAAAG+GGG + chr8.4:71432070-71432089 None:intergenic 45.0%
!! GGCCTTTTCAAGGGGAAAAA+GGG + chr8.4:71432071-71432090 None:intergenic 45.0%
!! TGAAAGGAGAGTGCTCCTTT+GGG + chr8.4:71432364-71432383 None:intergenic 45.0%
AAGCTTGTGACCTTGCGCTA+AGG - chr8.4:71431921-71431940 MS.gene81052:intron 50.0%
AGACATCTTGCGGCTGAGAA+AGG - chr8.4:71433000-71433019 MS.gene81052:CDS 50.0%
AGTTGTCTAAGCCTTGCAGC+GGG - chr8.4:71432220-71432239 MS.gene81052:CDS 50.0%
ATGGATGGTGAACTAAGGCC+AGG + chr8.4:71431757-71431776 None:intergenic 50.0%
CACGCTAGACATGGCACATA+TGG + chr8.4:71432948-71432967 None:intergenic 50.0%
CACTTGTAATTCGGCCAGCT+CGG - chr8.4:71431616-71431635 MS.gene81052:CDS 50.0%
CCCAATGAACACGCTAGACA+TGG + chr8.4:71432957-71432976 None:intergenic 50.0%
GCATCTTGAGGGTGATTGAG+AGG - chr8.4:71431499-71431518 MS.gene81052:CDS 50.0%
GCCATGTCTAGCGTGTTCAT+TGG - chr8.4:71432953-71432972 MS.gene81052:CDS 50.0%
GGGATGGGGAAAAAGCAACT+TGG + chr8.4:71431465-71431484 None:intergenic 50.0%
TAAGGCTGTTTGGGAGGATG+AGG - chr8.4:71430665-71430684 MS.gene81052:intron 50.0%
TCATCCTCCCAAACAGCCTT+AGG + chr8.4:71430666-71430685 None:intergenic 50.0%
TGGCCAGTCAGCTTTCATAG+TGG + chr8.4:71432800-71432819 None:intergenic 50.0%
TTTCGCGGCGATTCTGAACA+GGG - chr8.4:71430404-71430423 MS.gene81052:intron 50.0%
TTTGGGAGGATGAGGATACG+AGG - chr8.4:71430673-71430692 MS.gene81052:intron 50.0%
! AATCTGCTGCTTGAGGGATG+GGG + chr8.4:71431479-71431498 None:intergenic 50.0%
! CAATCTGCTGCTTGAGGGAT+GGG + chr8.4:71431480-71431499 None:intergenic 50.0%
! CCCCCTTTTTCCCCTTGAAA+AGG - chr8.4:71432066-71432085 MS.gene81052:intron 50.0%
! GGCGATTCTGAACAGGGTTT+TGG - chr8.4:71430410-71430429 MS.gene81052:intron 50.0%
! TTTTCGCGGCGATTCTGAAC+AGG - chr8.4:71430403-71430422 MS.gene81052:intron 50.0%
!! GAAAGGAGAGTGCTCCTTTG+GGG + chr8.4:71432363-71432382 None:intergenic 50.0%
!! GAAGTTGGATGGGTTGGGTT+TGG - chr8.4:71430629-71430648 MS.gene81052:intron 50.0%
!! GGGCCTTTTCAAGGGGAAAA+AGG + chr8.4:71432072-71432091 None:intergenic 50.0%
!! GTGAAAGGAGAGTGCTCCTT+TGG + chr8.4:71432365-71432384 None:intergenic 50.0%
AGAAGAGGAGCCTTAGCGCA+AGG + chr8.4:71431934-71431953 None:intergenic 55.0%
CGAGCTGGCCGAATTACAAG+TGG + chr8.4:71431618-71431637 None:intergenic 55.0%
CTTGCGGCTGAGAAAGGACT+GGG - chr8.4:71433006-71433025 MS.gene81052:CDS 55.0%
TCCACACAAGGCTACCCCAA+AGG - chr8.4:71432346-71432365 MS.gene81052:CDS 55.0%
TCTAAGCCTTGCAGCGGGAT+TGG - chr8.4:71432225-71432244 MS.gene81052:CDS 55.0%
TCTTGCGGCTGAGAAAGGAC+TGG - chr8.4:71433005-71433024 MS.gene81052:CDS 55.0%
TGATGAGCAATCGGTCCACC+CGG + chr8.4:71430813-71430832 None:intergenic 55.0%
TTGCGGCTGAGAAAGGACTG+GGG - chr8.4:71433007-71433026 MS.gene81052:CDS 55.0%
! GCAATCTGCTGCTTGAGGGA+TGG + chr8.4:71431481-71431500 None:intergenic 55.0%
!! GAATGGGTTATGCAACCGGG+TGG - chr8.4:71430795-71430814 MS.gene81052:intron 55.0%
!! TCCTTTGGGGTAGCCTTGTG+TGG + chr8.4:71432350-71432369 None:intergenic 55.0%
!! TTGGGGTAGCCTTGTGTGGA+AGG + chr8.4:71432346-71432365 None:intergenic 55.0%
CTGAAGCCAATCCCGCTGCA+AGG + chr8.4:71432234-71432253 None:intergenic 60.0%
! AGCGTGTTCATTGGGGCACC+TGG - chr8.4:71432962-71432981 MS.gene81052:CDS 60.0%
!! AGCGGGATTGGCTTCAGCCT+GGG - chr8.4:71432237-71432256 MS.gene81052:CDS 60.0%
!! CAGCGGGATTGGCTTCAGCC+TGG - chr8.4:71432236-71432255 MS.gene81052:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 71430012 71433099 71430012 ID=MS.gene81052
chr8.4 mRNA 71430012 71433099 71430012 ID=MS.gene81052.t1;Parent=MS.gene81052
chr8.4 exon 71432156 71433099 71432156 ID=MS.gene81052.t1.exon1;Parent=MS.gene81052.t1
chr8.4 CDS 71432156 71433099 71432156 ID=cds.MS.gene81052.t1;Parent=MS.gene81052.t1
chr8.4 exon 71431413 71431662 71431413 ID=MS.gene81052.t1.exon2;Parent=MS.gene81052.t1
chr8.4 CDS 71431413 71431662 71431413 ID=cds.MS.gene81052.t1;Parent=MS.gene81052.t1
chr8.4 exon 71430012 71430188 71430012 ID=MS.gene81052.t1.exon3;Parent=MS.gene81052.t1
chr8.4 CDS 71430012 71430188 71430012 ID=cds.MS.gene81052.t1;Parent=MS.gene81052.t1
Gene Sequence

>MS.gene81052

ATGAAAGAATCCGAATTACGCGCCATTTACCTCTTACGCCAACAACAACAACGTCTCTCAACCGTTTTCAACTCTTCCGATCAGAATCAAAACCCTAACCCTAAGCTAATTGAAGATCTGAAATCTGCATTATTCAAACAGATTTCAATAAACAATGAAATTCAGCAGATTCTGTTGAATCCACATAGAACAGGGAATGTAATTGATCCTGAATTCAATTTCGGAAATTCAAATTTCAATGTTGGGAATTACGATAGATGTAGAACTGTTGATCAGAGTTTGTCAAAGAGGAAAACTATTGAATGGAATCCTAAAAAGGATAAATTTTTAGTTGCTATTTGTGTTTCCGGTCAAATGTCGAACCATTTGATTTGTTTAGAAAAGCATATGTTTTTCGCGGCGATTCTGAACAGGGTTTTGGTGATTCCAAGTTCTAAAGTTGATTATCAGTATGATAGAGTTGTTGATATTGATCATATTAATAAATGTTTAGGGAAAAAAGTTGTGATGTCTTTTGATGAATTTTCGAATGTTAAGAAGGGTCATTTGCATATTGATAAGTTTCTTTGTTATTTTGCTTTGCCTCAACCTTGTTATTTGGATGGTGAGAGGTTGAAGAAGTTGGATGGGTTGGGTTTGGGTATGAGTAAACCTAAGGCTGTTTGGGAGGATGAGGATACGAGGAATCCAAAGAAGAAAACTGTTCAGGATGTTATGGATAAGTTTTCTTATGATGATGATGTTATGGCGATTGGTGATGTTTTTTATGCTGAAGTGGAGCATGAATGGGTTATGCAACCGGGTGGACCGATTGCTCATCACTGCAAGACTTTGATTGAACCTAATCGCCTTATTTTGCTTACTGCTCAGCGATTTATTCAGACATTCCTTGGAAGGAACTTCATTGCTTTGCATTTTCGGAGACACGGTTTTTTGAAATTCTGGTACTACCTTTATTCCTTTTTCTGGTTTAATTTCTCATAAGATTATGGGGTGTATATACTGATGACATGAGTCTGATGTGTTAGAGTATACTATTGCCTGAATCTATGCGTTAGATTAATCAGATATTTCTTGCATATGTAGTCAAGATCGGCTTTGATCCGTTGAATCAGCTTTAATAGCAAATTTGAAATCAAAGCGGTTCGAACTTGATCCAAAGATTTTGAGTTGTTGACTGCATGAATGCGTAGAATTTTTTACTGCACGGATCCGAATTTGAATGAAGTGCCAACTGCATTTTCATGGCTCATGAGTTATGGCTATTCATTTTTAGTTGTTTTGTTTCATTTCATGGTTAACATGATCTGCTTGAAATAATGTAAAAAGTTATGCATGCATATAAGGCTTTTAGTTGATGAGAAACTATCCTGCAATTTTAGTGCTCTCTTTTTCCCTCTACCATATTGGCTTACTTATCCATTTTCATGTTTGCAGTAATGCTAAAAAACCAAGTTGCTTTTTCCCCATCCCTCAAGCAGCAGATTGCATCTTGAGGGTGATTGAGAGGGCTGATGCACCCATCATATATCTTTCTACGGATGCAGCTGAAAGTGAAACTGGTCTACTTCAGTCACTGATTGTGCTGAATGGCAAGTCTGTTCCACTTGTAATTCGGCCAGCTCGGAATTCAGCAGAAAAATGGGATGCTTTGTTGTACAGGCATCATATTGAGGGAGATTCACAGGTGAGATGACTGTCCTTGCTTATTTTTTTCATGTGCTTTAAACTTAAATAGAGTACCTGGCCTTAGTTCACCATCCATATCTGATCATTAGGATTACAATTTACAAATGAAAGTTTCATGGGTAACTTGGTACTTTAAAGATAGAGTAGAGAAGCGTCGAATTCATTGTGTCTATTCTAGGTAGTCTTATCCTGTATTTACAAAATACTGATTTCATGACTCAAGCTTGTGACCTTGCGCTAAGGCTCCTCTTCTGTCACAATTTACAAAACATGCAAAAGACTAACACTGTCAAGAAGACACAACTGTTGATAATGCCCCTGGTTTTCGCTTGAATTTATTGTTGTAAGTTCTGGAAAGATTTGTGCCCCCTTTTTCCCCTTGAAAAGGCCCTTTTAAGTTTGAAGCTTAGTAAATGAAATCTTATCGTTCTCATTTTGTCACACTTTTATAACATTTTACTGTCAGGAAAAGGAAACTTTAAGAGCTGTAGGTCCTATGGTATTCAACTTGTTTCCTTTAGTTGTCTAAGCCTTGCAGCGGGATTGGCTTCAGCCTGGGAATAAGTTTAAGTATCTGTTATGAACATTTCTTTGTGTAATTCCCCAAAACGGGATAGAATTGAGTAACAATGAAGATGATAACCTTCCACACAAGGCTACCCCAAAGGAGCACTCTCCTTTCACGCTAGATAATTCTCTAGTGACAATTTAATTATTCAAAGCTATCTTCCCCTCTACCATTCAAGGGATATTTAAAGACTTAAGAATAACCAAAATAACAACTTGTAAACACCGACTAACAAAGTTATCAACTTACCAACTAACTTCTACTAACTTACTAACTCTTAACTACTCTAACTATCAAATACTCTAAATCCTTACAGAATCCCTGTCAAATTTGGTTTGATATGGCGTAGTCACCGATTTTTTTTGTAGGCTCATAATGAAAGGATAATGCTTATATTGAACTAAAAACAATTAAACACTTGTGTATGAACTTATAATTGTATAAGTATCTACTACTCTAATTTGCACCTTCCCTCTCTGAAATTTTTTGCACAGAGAATGCATGAGAGCTAATTGTCCAATTTTTAAACCACTATGAAAGCTGACTGGCCAATTTTTAAACAATTTATTGTTATTTCGTGAAAAACGAAACAACAAAGCTACTCTCTTTCAATTTATTTCGGTGATGTTCATTATGAATATTTTCACACTGAAGGTGGAAGCTATGTTGGACAAGACCATATGTGCCATGTCTAGCGTGTTCATTGGGGCACCTGGTTCCACTTTCACTGAAGACATCTTGCGGCTGAGAAAGGACTGGGGATCAGCATCGTTGTGTGATGAGTATCTTTGCCAAGGTGAAGAACCGAATATTGTAGCGGAAAATGAATGA

Protein sequence

>MS.gene81052.t1

MKESELRAIYLLRQQQQRLSTVFNSSDQNQNPNPKLIEDLKSALFKQISINNEIQQILLNPHRTGNVIDPEFNFGNSNFNVGNYDRCRTVDQSLSKRKTIEWNPKKDKFLVAICVSGQMSNHLICLEKHMFFAAILNRVLVIPSSKVDYQYDRVVDIDHINKCLGKKVVMSFDEFSNVKKGHLHIDKFLCYFALPQPCYLDGERLKKLDGLGLGMSKPKAVWEDEDTRNPKKKTVQDVMDKFSYDDDVMAIGDVFYAEVEHEWVMQPGGPIAHHCKTLIEPNRLILLTAQRFIQTFLGRNFIALHFRRHGFLKFCNAKKPSCFFPIPQAADCILRVIERADAPIIYLSTDAAESETGLLQSLIVLNGKSVPLVIRPARNSAEKWDALLYRHHIEGDSQVEAMLDKTICAMSSVFIGAPGSTFTEDILRLRKDWGSASLCDEYLCQGEEPNIVAENE