Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81052.t1 | XP_003627474.1 | 99.1 | 456 | 4 | 0 | 1 | 456 | 87 | 542 | 8.80E-266 | 925.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81052.t1 | Q9FK30 | 68.3 | 467 | 131 | 7 | 1 | 456 | 106 | 566 | 1.2e-183 | 644.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81052.t1 | G7L9X3 | 99.1 | 456 | 4 | 0 | 1 | 456 | 87 | 542 | 6.3e-266 | 925.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene051007 | MS.gene81052 | PPI |
MS.gene25028 | MS.gene81052 | PPI |
MS.gene08466 | MS.gene81052 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81052.t1 | MTR_8g023490 | 99.123 | 456 | 4 | 0 | 1 | 456 | 87 | 542 | 0.0 | 944 |
MS.gene81052.t1 | MTR_8g023490 | 99.246 | 398 | 3 | 0 | 1 | 398 | 87 | 484 | 0.0 | 825 |
MS.gene81052.t1 | MTR_2g006810 | 75.652 | 115 | 24 | 2 | 165 | 278 | 502 | 613 | 4.68e-44 | 163 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81052.t1 | AT1G17270 | 67.171 | 463 | 141 | 6 | 1 | 456 | 106 | 564 | 0.0 | 648 |
MS.gene81052.t1 | AT1G17270 | 67.171 | 463 | 141 | 6 | 1 | 456 | 106 | 564 | 0.0 | 648 |
MS.gene81052.t1 | AT5G50420 | 68.094 | 467 | 132 | 7 | 1 | 456 | 106 | 566 | 0.0 | 638 |
MS.gene81052.t1 | AT1G53770 | 65.584 | 462 | 143 | 5 | 1 | 456 | 112 | 563 | 0.0 | 634 |
MS.gene81052.t1 | AT1G53770 | 60.400 | 500 | 144 | 6 | 1 | 456 | 112 | 601 | 0.0 | 612 |
Find 99 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATCATATTAATAAATGTTT+AGG | 0.213341 | 8.4:-71432606 | MS.gene81052:CDS |
TTAGTTGCTATTTGTGTTTC+CGG | 0.216242 | 8.4:-71432750 | MS.gene81052:CDS |
TTTGCCTCAACCTTGTTATT+TGG | 0.238205 | 8.4:-71432499 | MS.gene81052:CDS |
ATTGATCCTGAATTCAATTT+CGG | 0.284521 | 8.4:-71432876 | MS.gene81052:CDS |
GGCGATTCTGAACAGGGTTT+TGG | 0.289374 | 8.4:-71432679 | MS.gene81052:CDS |
GAAGTTGGATGGGTTGGGTT+TGG | 0.289769 | 8.4:-71432460 | MS.gene81052:CDS |
ATCATATTAATAAATGTTTA+GGG | 0.291964 | 8.4:-71432605 | MS.gene81052:CDS |
AAGTTGGATGGGTTGGGTTT+GGG | 0.298746 | 8.4:-71432459 | MS.gene81052:CDS |
TATTGAATGGAATCCTAAAA+AGG | 0.306443 | 8.4:-71432781 | MS.gene81052:CDS |
GAATTTCCGAAATTGAATTC+AGG | 0.320671 | 8.4:+71432870 | None:intergenic |
TCTTCAATTAGCTTAGGGTT+AGG | 0.344093 | 8.4:+71432984 | None:intergenic |
GAGGTAAATGGCGCGTAATT+CGG | 0.355551 | 8.4:+71433067 | None:intergenic |
TGAGTAAACCTAAGGCTGTT+TGG | 0.356001 | 8.4:-71432434 | MS.gene81052:CDS |
GAAAACTGTTCAGGATGTTA+TGG | 0.370308 | 8.4:-71432382 | MS.gene81052:CDS |
GAGTAAACCTAAGGCTGTTT+GGG | 0.376187 | 8.4:-71432433 | MS.gene81052:CDS |
CTTCAATTAGCTTAGGGTTA+GGG | 0.381882 | 8.4:+71432985 | None:intergenic |
CACGCTAGACATGGCACATA+TGG | 0.383655 | 8.4:+71430144 | None:intergenic |
CCATGTCTAGCGTGTTCATT+GGG | 0.389338 | 8.4:-71430135 | MS.gene81052:CDS |
GCTGAGCAGTAAGCAAAATA+AGG | 0.389924 | 8.4:+71432229 | None:intergenic |
TTCTTATGATGATGATGTTA+TGG | 0.392013 | 8.4:-71432352 | MS.gene81052:CDS |
TTGAAGAAGTTGGATGGGTT+GGG | 0.392285 | 8.4:-71432465 | MS.gene81052:CDS |
CGATTTATTCAGACATTCCT+TGG | 0.392434 | 8.4:-71432207 | MS.gene81052:CDS |
GAAATTCAAATTTCAATGTT+GGG | 0.393322 | 8.4:-71432854 | MS.gene81052:CDS |
TCATCCTCCCAAACAGCCTT+AGG | 0.396707 | 8.4:+71432426 | None:intergenic |
TCCAAAGAAGAAAACTGTTC+AGG | 0.400163 | 8.4:-71432391 | MS.gene81052:CDS |
TTCAGATCTTCAATTAGCTT+AGG | 0.405765 | 8.4:+71432978 | None:intergenic |
GGAAATTCAAATTTCAATGT+TGG | 0.407138 | 8.4:-71432855 | MS.gene81052:CDS |
AGTCTGTTCCACTTGTAATT+CGG | 0.409574 | 8.4:-71431482 | MS.gene81052:CDS |
GTAAGCAAAATAAGGCGATT+AGG | 0.416760 | 8.4:+71432237 | None:intergenic |
GTTGAAGAAGTTGGATGGGT+TGG | 0.422746 | 8.4:-71432466 | MS.gene81052:CDS |
CTGTTGAATCCACATAGAAC+AGG | 0.430746 | 8.4:-71432906 | MS.gene81052:CDS |
TCAGATCTTCAATTAGCTTA+GGG | 0.433199 | 8.4:+71432979 | None:intergenic |
TGATAATCAACTTTAGAACT+TGG | 0.433498 | 8.4:+71432651 | None:intergenic |
AATGGGATGCTTTGTTGTAC+AGG | 0.436207 | 8.4:-71431437 | MS.gene81052:CDS |
TTGTTGGCGTAAGAGGTAAA+TGG | 0.438432 | 8.4:+71433055 | None:intergenic |
CAATCTGCTGCTTGAGGGAT+GGG | 0.440779 | 8.4:+71431612 | None:intergenic |
AGCGTGTTCATTGGGGCACC+TGG | 0.448301 | 8.4:-71430127 | MS.gene81052:CDS |
GATGCAGCTGAAAGTGAAAC+TGG | 0.457579 | 8.4:-71431537 | MS.gene81052:CDS |
GTTGTTGTTGTTGGCGTAAG+AGG | 0.459424 | 8.4:+71433048 | None:intergenic |
TTGAGAGACGTTGTTGTTGT+TGG | 0.460441 | 8.4:+71433039 | None:intergenic |
GCCATGTCTAGCGTGTTCAT+TGG | 0.460806 | 8.4:-71430136 | MS.gene81052:CDS |
ATCCGTAGAAAGATATATGA+TGG | 0.464180 | 8.4:+71431557 | None:intergenic |
TTGTACAGGCATCATATTGA+GGG | 0.469353 | 8.4:-71431423 | MS.gene81052:CDS |
GCATGAATGGGTTATGCAAC+CGG | 0.476154 | 8.4:-71432298 | MS.gene81052:CDS |
TGGTGAGAGGTTGAAGAAGT+TGG | 0.481349 | 8.4:-71432475 | MS.gene81052:CDS |
CCTCAACCTTGTTATTTGGA+TGG | 0.483341 | 8.4:-71432495 | MS.gene81052:CDS |
CTTGCGGCTGAGAAAGGACT+GGG | 0.485227 | 8.4:-71430083 | MS.gene81052:CDS |
ATGCTGAAGTGGAGCATGAA+TGG | 0.486444 | 8.4:-71432311 | MS.gene81052:CDS |
CAAGATGTCTTCAGTGAAAG+TGG | 0.493024 | 8.4:+71430102 | None:intergenic |
ACTGAAGGTGGAAGCTATGT+TGG | 0.493826 | 8.4:-71430173 | MS.gene81052:intron |
CACTTGTAATTCGGCCAGCT+CGG | 0.495746 | 8.4:-71431473 | MS.gene81052:CDS |
CAAAGAGGAAAACTATTGAA+TGG | 0.498658 | 8.4:-71432794 | MS.gene81052:CDS |
GTCTTGCAGTGATGAGCAAT+CGG | 0.502179 | 8.4:+71432270 | None:intergenic |
AGACATCTTGCGGCTGAGAA+AGG | 0.504340 | 8.4:-71430089 | MS.gene81052:CDS |
ATTACATTCCCTGTTCTATG+TGG | 0.511766 | 8.4:+71432897 | None:intergenic |
CAGTCACTGATTGTGCTGAA+TGG | 0.512195 | 8.4:-71431507 | MS.gene81052:CDS |
TGCTGAAGTGGAGCATGAAT+GGG | 0.512626 | 8.4:-71432310 | MS.gene81052:CDS |
TTGATCAGAGTTTGTCAAAG+AGG | 0.522693 | 8.4:-71432809 | MS.gene81052:CDS |
CAAATGGTTCGACATTTGAC+CGG | 0.524476 | 8.4:+71432731 | None:intergenic |
TTATTCAGACATTCCTTGGA+AGG | 0.535294 | 8.4:-71432203 | MS.gene81052:CDS |
AAGATGCAATCTGCTGCTTG+AGG | 0.535947 | 8.4:+71431606 | None:intergenic |
GCAATCTGCTGCTTGAGGGA+TGG | 0.535959 | 8.4:+71431611 | None:intergenic |
AGATGCAATCTGCTGCTTGA+GGG | 0.537297 | 8.4:+71431607 | None:intergenic |
TTTCGCGGCGATTCTGAACA+GGG | 0.537645 | 8.4:-71432685 | MS.gene81052:CDS |
AGCAGCAGATTGCATCTTGA+GGG | 0.538084 | 8.4:-71431601 | MS.gene81052:CDS |
TCATATTGAGGGAGATTCAC+AGG | 0.543571 | 8.4:-71431412 | MS.gene81052:intron |
CAATATTCGGTTCTTCACCT+TGG | 0.544512 | 8.4:+71430029 | None:intergenic |
GTTGTACAGGCATCATATTG+AGG | 0.546833 | 8.4:-71431424 | MS.gene81052:CDS |
TAAGGCTGTTTGGGAGGATG+AGG | 0.546866 | 8.4:-71432424 | MS.gene81052:CDS |
ACCCATCATATATCTTTCTA+CGG | 0.548743 | 8.4:-71431559 | MS.gene81052:CDS |
GATGATGATGTTATGGCGAT+TGG | 0.552086 | 8.4:-71432345 | MS.gene81052:CDS |
TCTTGCGGCTGAGAAAGGAC+TGG | 0.552823 | 8.4:-71430084 | MS.gene81052:CDS |
CATGAATGGGTTATGCAACC+GGG | 0.566495 | 8.4:-71432297 | MS.gene81052:CDS |
CTGATCGGAAGAGTTGAAAA+CGG | 0.566837 | 8.4:+71433016 | None:intergenic |
AAGCAATGAAGTTCCTTCCA+AGG | 0.569377 | 8.4:+71432190 | None:intergenic |
GCATCTTGAGGGTGATTGAG+AGG | 0.569675 | 8.4:-71431590 | MS.gene81052:CDS |
TGATGAGCAATCGGTCCACC+CGG | 0.569754 | 8.4:+71432279 | None:intergenic |
GAGAGGTTGAAGAAGTTGGA+TGG | 0.570927 | 8.4:-71432471 | MS.gene81052:CDS |
CTCTCACCATCCAAATAACA+AGG | 0.576142 | 8.4:+71432489 | None:intergenic |
CCCAATGAACACGCTAGACA+TGG | 0.579689 | 8.4:+71430135 | None:intergenic |
AAGCAGCAGATTGCATCTTG+AGG | 0.583857 | 8.4:-71431602 | MS.gene81052:CDS |
AGAGGTTGAAGAAGTTGGAT+GGG | 0.586242 | 8.4:-71432470 | MS.gene81052:CDS |
TTTGGGTATGAGTAAACCTA+AGG | 0.587132 | 8.4:-71432442 | MS.gene81052:CDS |
CTTGTTATTTGGATGGTGAG+AGG | 0.598699 | 8.4:-71432488 | MS.gene81052:CDS |
CCATCCAAATAACAAGGTTG+AGG | 0.599350 | 8.4:+71432495 | None:intergenic |
TCTTCAGTGAAAGTGGAACC+AGG | 0.609539 | 8.4:+71430109 | None:intergenic |
TAAACCTAAGGCTGTTTGGG+AGG | 0.614046 | 8.4:-71432430 | MS.gene81052:CDS |
CATCTTGAGGGTGATTGAGA+GGG | 0.616500 | 8.4:-71431589 | MS.gene81052:CDS |
TCCGTAGAAAGATATATGAT+GGG | 0.622070 | 8.4:+71431558 | None:intergenic |
CTTTCACTGAAGACATCTTG+CGG | 0.622202 | 8.4:-71430099 | MS.gene81052:CDS |
CGAGCTGGCCGAATTACAAG+TGG | 0.629533 | 8.4:+71431474 | None:intergenic |
AATCTGCTGCTTGAGGGATG+GGG | 0.632784 | 8.4:+71431613 | None:intergenic |
TGTGATGAGTATCTTTGCCA+AGG | 0.635336 | 8.4:-71430046 | MS.gene81052:CDS |
CATGTCTAGCGTGTTCATTG+GGG | 0.682670 | 8.4:-71430134 | MS.gene81052:CDS |
TGTTGAATCCACATAGAACA+GGG | 0.688035 | 8.4:-71432905 | MS.gene81052:CDS |
TGAAGAACCGAATATTGTAG+CGG | 0.689587 | 8.4:-71430023 | MS.gene81052:CDS |
GAATGGGTTATGCAACCGGG+TGG | 0.697233 | 8.4:-71432294 | MS.gene81052:CDS |
TTTGGGAGGATGAGGATACG+AGG | 0.712720 | 8.4:-71432416 | MS.gene81052:CDS |
TTGCGGCTGAGAAAGGACTG+GGG | 0.724371 | 8.4:-71430082 | MS.gene81052:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACAATAAATTGTTTAAAAAT+TGG | + | chr8.4:71432820-71432839 | None:intergenic | 10.0% |
!! | ATCATATTAATAAATGTTTA+GGG | - | chr8.4:71430484-71430503 | MS.gene81052:intron | 10.0% |
!! | GATCATATTAATAAATGTTT+AGG | - | chr8.4:71430483-71430502 | MS.gene81052:intron | 15.0% |
!! | TTAATTTCTCATAAGATTAT+GGG | - | chr8.4:71430982-71431001 | MS.gene81052:intron | 15.0% |
!!! | ACTAAAAATTTATCCTTTTT+AGG | + | chr8.4:71430324-71430343 | None:intergenic | 15.0% |
!!! | TTTAATTTCTCATAAGATTA+TGG | - | chr8.4:71430981-71431000 | MS.gene81052:intron | 15.0% |
!! | ATTTACAAATGAAAGTTTCA+TGG | - | chr8.4:71431797-71431816 | MS.gene81052:intron | 20.0% |
!! | GAAATTCAAATTTCAATGTT+GGG | - | chr8.4:71430235-71430254 | MS.gene81052:intron | 20.0% |
!! | TAATTTCTCATAAGATTATG+GGG | - | chr8.4:71430983-71431002 | MS.gene81052:intron | 20.0% |
!! | TACTCTCTTTCAATTTATTT+CGG | - | chr8.4:71432868-71432887 | MS.gene81052:CDS | 20.0% |
!! | TTTACAAATGAAAGTTTCAT+GGG | - | chr8.4:71431798-71431817 | MS.gene81052:intron | 20.0% |
!! | TTTCATAGTGGTTTAAAAAT+TGG | + | chr8.4:71432788-71432807 | None:intergenic | 20.0% |
!!! | AATCAGTATTTTGTAAATAC+AGG | + | chr8.4:71431892-71431911 | None:intergenic | 20.0% |
!!! | TTTTATAACATTTTACTGTC+AGG | - | chr8.4:71432145-71432164 | MS.gene81052:intron | 20.0% |
! | AAAAGTTATGCATGCATATA+AGG | - | chr8.4:71431336-71431355 | MS.gene81052:intron | 25.0% |
! | ACTAAGCTTCAAACTTAAAA+GGG | + | chr8.4:71432092-71432111 | None:intergenic | 25.0% |
! | ATATCAAACCAAATTTGACA+GGG | + | chr8.4:71432591-71432610 | None:intergenic | 25.0% |
! | ATTGATCCTGAATTCAATTT+CGG | - | chr8.4:71430213-71430232 | MS.gene81052:intron | 25.0% |
! | GAATTTATTGTTGTAAGTTC+TGG | - | chr8.4:71432032-71432051 | MS.gene81052:intron | 25.0% |
! | GGAAATTCAAATTTCAATGT+TGG | - | chr8.4:71430234-71430253 | MS.gene81052:intron | 25.0% |
! | TAAACCAGAAAAAGGAATAA+AGG | + | chr8.4:71430965-71430984 | None:intergenic | 25.0% |
! | TACTAAGCTTCAAACTTAAA+AGG | + | chr8.4:71432093-71432112 | None:intergenic | 25.0% |
! | TATGAGCCTACAAAAAAAAT+CGG | + | chr8.4:71432624-71432643 | None:intergenic | 25.0% |
! | TATTGAATGGAATCCTAAAA+AGG | - | chr8.4:71430308-71430327 | MS.gene81052:intron | 25.0% |
! | TGAGAAATTAAACCAGAAAA+AGG | + | chr8.4:71430973-71430992 | None:intergenic | 25.0% |
!! | GAATTTTCGAATGTTAAGAA+GGG | - | chr8.4:71430531-71430550 | MS.gene81052:intron | 25.0% |
!! | GCTTTTCTAAACAAATCAAA+TGG | + | chr8.4:71430377-71430396 | None:intergenic | 25.0% |
!! | TAGCAAATTTGAAATCAAAG+CGG | - | chr8.4:71431133-71431152 | MS.gene81052:intron | 25.0% |
!! | TATGAATATTTTCACACTGA+AGG | - | chr8.4:71432901-71432920 | MS.gene81052:CDS | 25.0% |
!! | TGAATTTTCGAATGTTAAGA+AGG | - | chr8.4:71430530-71430549 | MS.gene81052:intron | 25.0% |
!! | TTAAACTTAAATAGAGTACC+TGG | - | chr8.4:71431736-71431755 | MS.gene81052:intron | 25.0% |
!! | TTCTTATGATGATGATGTTA+TGG | - | chr8.4:71430737-71430756 | MS.gene81052:intron | 25.0% |
!!! | AAGTTGATAACTTTGTTAGT+CGG | + | chr8.4:71432496-71432515 | None:intergenic | 25.0% |
!!! | AGTTGTTTTGTTTCATTTCA+TGG | - | chr8.4:71431286-71431305 | MS.gene81052:intron | 25.0% |
!!! | GTGTTTACAAGTTGTTATTT+TGG | + | chr8.4:71432474-71432493 | None:intergenic | 25.0% |
!!! | TGATAATCAACTTTAGAACT+TGG | + | chr8.4:71430441-71430460 | None:intergenic | 25.0% |
AATAAATTCAAGCGAAAACC+AGG | + | chr8.4:71432021-71432040 | None:intergenic | 30.0% | |
AATGGATAAGTAAGCCAATA+TGG | + | chr8.4:71431416-71431435 | None:intergenic | 30.0% | |
ACCCATCATATATCTTTCTA+CGG | - | chr8.4:71431530-71431549 | MS.gene81052:CDS | 30.0% | |
AGATACTTAAACTTATTCCC+AGG | + | chr8.4:71432257-71432276 | None:intergenic | 30.0% | |
AGTCAACAACTCAAAATCTT+TGG | + | chr8.4:71431171-71431190 | None:intergenic | 30.0% | |
ATAAATTCAAGCGAAAACCA+GGG | + | chr8.4:71432020-71432039 | None:intergenic | 30.0% | |
ATCCGTAGAAAGATATATGA+TGG | + | chr8.4:71431535-71431554 | None:intergenic | 30.0% | |
CAAAGAGGAAAACTATTGAA+TGG | - | chr8.4:71430295-71430314 | MS.gene81052:intron | 30.0% | |
CATATCAAACCAAATTTGAC+AGG | + | chr8.4:71432592-71432611 | None:intergenic | 30.0% | |
CATTACTGCAAACATGAAAA+TGG | + | chr8.4:71431434-71431453 | None:intergenic | 30.0% | |
GAATTCATTGTGTCTATTCT+AGG | - | chr8.4:71431857-71431876 | MS.gene81052:intron | 30.0% | |
GAATTTCCGAAATTGAATTC+AGG | + | chr8.4:71430222-71430241 | None:intergenic | 30.0% | |
GCACATGAAAAAAATAAGCA+AGG | + | chr8.4:71431715-71431734 | None:intergenic | 30.0% | |
GTAAGTTAGTAGAAGTTAGT+TGG | + | chr8.4:71432520-71432539 | None:intergenic | 30.0% | |
GTAATCCTAATGATCAGATA+TGG | + | chr8.4:71431776-71431795 | None:intergenic | 30.0% | |
GTCTTTAAATATCCCTTGAA+TGG | + | chr8.4:71432441-71432460 | None:intergenic | 30.0% | |
TCCGTAGAAAGATATATGAT+GGG | + | chr8.4:71431534-71431553 | None:intergenic | 30.0% | |
TGTGCAAAAAATTTCAGAGA+GGG | + | chr8.4:71432742-71432761 | None:intergenic | 30.0% | |
TTAATCTAACGCATAGATTC+AGG | + | chr8.4:71431055-71431074 | None:intergenic | 30.0% | |
TTTGTAAATTGTGACAGAAG+AGG | + | chr8.4:71431949-71431968 | None:intergenic | 30.0% | |
! | AACATTTTACTGTCAGGAAA+AGG | - | chr8.4:71432151-71432170 | MS.gene81052:intron | 30.0% |
! | ACTACCTTTATTCCTTTTTC+TGG | - | chr8.4:71430958-71430977 | MS.gene81052:intron | 30.0% |
! | ACTTCATTGCTTTGCATTTT+CGG | - | chr8.4:71430910-71430929 | MS.gene81052:intron | 30.0% |
! | TCAGATCTTCAATTAGCTTA+GGG | + | chr8.4:71430113-71430132 | None:intergenic | 30.0% |
! | TCATTTTCCGCTACAATATT+CGG | + | chr8.4:71433076-71433095 | None:intergenic | 30.0% |
! | TGCTATTAAAGCTGATTCAA+CGG | + | chr8.4:71431118-71431137 | None:intergenic | 30.0% |
! | TTCAGATCTTCAATTAGCTT+AGG | + | chr8.4:71430114-71430133 | None:intergenic | 30.0% |
! | TTTTGTAGGCTCATAATGAA+AGG | - | chr8.4:71432629-71432648 | MS.gene81052:CDS | 30.0% |
!! | AGAAAAGCATATGTTTTTCG+CGG | - | chr8.4:71430389-71430408 | MS.gene81052:intron | 30.0% |
!! | CTGTCAAATTTGGTTTGATA+TGG | - | chr8.4:71432590-71432609 | MS.gene81052:CDS | 30.0% |
!! | TTAGTTGCTATTTGTGTTTC+CGG | - | chr8.4:71430339-71430358 | MS.gene81052:intron | 30.0% |
!!! | TAGTCACCGATTTTTTTTGT+AGG | - | chr8.4:71432615-71432634 | MS.gene81052:CDS | 30.0% |
!!! | TGATGTTTTTTATGCTGAAG+TGG | - | chr8.4:71430767-71430786 | MS.gene81052:intron | 30.0% |
AAATATCCCTTGAATGGTAG+AGG | + | chr8.4:71432435-71432454 | None:intergenic | 35.0% | |
AAGTAAGCCAATATGGTAGA+GGG | + | chr8.4:71431409-71431428 | None:intergenic | 35.0% | |
AATATCCCTTGAATGGTAGA+GGG | + | chr8.4:71432434-71432453 | None:intergenic | 35.0% | |
AATTTGACAGGGATTCTGTA+AGG | + | chr8.4:71432580-71432599 | None:intergenic | 35.0% | |
ACCATCCATATCTGATCATT+AGG | - | chr8.4:71431768-71431787 | MS.gene81052:intron | 35.0% | |
AGAGAATTATCTAGCGTGAA+AGG | + | chr8.4:71432380-71432399 | None:intergenic | 35.0% | |
AGTCTGTTCCACTTGTAATT+CGG | - | chr8.4:71431607-71431626 | MS.gene81052:CDS | 35.0% | |
ATTACATTCCCTGTTCTATG+TGG | + | chr8.4:71430195-71430214 | None:intergenic | 35.0% | |
CAAAAAATTTCAGAGAGGGA+AGG | + | chr8.4:71432738-71432757 | None:intergenic | 35.0% | |
CGATTTATTCAGACATTCCT+TGG | - | chr8.4:71430882-71430901 | MS.gene81052:intron | 35.0% | |
CTGTGCAAAAAATTTCAGAG+AGG | + | chr8.4:71432743-71432762 | None:intergenic | 35.0% | |
CTTGCATATGTAGTCAAGAT+CGG | - | chr8.4:71431085-71431104 | MS.gene81052:intron | 35.0% | |
CTTTGTGTAATTCCCCAAAA+CGG | - | chr8.4:71432290-71432309 | MS.gene81052:CDS | 35.0% | |
GAAAACTGTTCAGGATGTTA+TGG | - | chr8.4:71430707-71430726 | MS.gene81052:intron | 35.0% | |
GTAAGCAAAATAAGGCGATT+AGG | + | chr8.4:71430855-71430874 | None:intergenic | 35.0% | |
GTTGGCACTTCATTCAAATT+CGG | + | chr8.4:71431227-71431246 | None:intergenic | 35.0% | |
TAAATTCAAGCGAAAACCAG+GGG | + | chr8.4:71432019-71432038 | None:intergenic | 35.0% | |
TAAGTAAGCCAATATGGTAG+AGG | + | chr8.4:71431410-71431429 | None:intergenic | 35.0% | |
TACAGAATCCCTGTCAAATT+TGG | - | chr8.4:71432580-71432599 | MS.gene81052:CDS | 35.0% | |
TCCAAAGAAGAAAACTGTTC+AGG | - | chr8.4:71430698-71430717 | MS.gene81052:intron | 35.0% | |
TCCTAATGATCAGATATGGA+TGG | + | chr8.4:71431772-71431791 | None:intergenic | 35.0% | |
TCGGAATTCAGCAGAAAAAT+GGG | - | chr8.4:71431635-71431654 | MS.gene81052:CDS | 35.0% | |
TGAAAGTTTCATGGGTAACT+TGG | - | chr8.4:71431806-71431825 | MS.gene81052:intron | 35.0% | |
TGAAGAACCGAATATTGTAG+CGG | - | chr8.4:71433066-71433085 | MS.gene81052:CDS | 35.0% | |
TGTTGAATCCACATAGAACA+GGG | - | chr8.4:71430184-71430203 | MS.gene81052:intron | 35.0% | |
TTATTCAGACATTCCTTGGA+AGG | - | chr8.4:71430886-71430905 | MS.gene81052:intron | 35.0% | |
TTGATCAGAGTTTGTCAAAG+AGG | - | chr8.4:71430280-71430299 | MS.gene81052:intron | 35.0% | |
TTGTACAGGCATCATATTGA+GGG | - | chr8.4:71431666-71431685 | MS.gene81052:intron | 35.0% | |
TTTGGGTATGAGTAAACCTA+AGG | - | chr8.4:71430647-71430666 | MS.gene81052:intron | 35.0% | |
TTTGTGTAATTCCCCAAAAC+GGG | - | chr8.4:71432291-71432310 | MS.gene81052:CDS | 35.0% | |
! | AACTTAAAAGGGCCTTTTCA+AGG | + | chr8.4:71432081-71432100 | None:intergenic | 35.0% |
! | AAGGAAACTTTAAGAGCTGT+AGG | - | chr8.4:71432170-71432189 | MS.gene81052:CDS | 35.0% |
! | ACTCAATTCTATCCCGTTTT+GGG | + | chr8.4:71432306-71432325 | None:intergenic | 35.0% |
! | ACTTAAAAGGGCCTTTTCAA+GGG | + | chr8.4:71432080-71432099 | None:intergenic | 35.0% |
! | CTTCAATTAGCTTAGGGTTA+GGG | + | chr8.4:71430107-71430126 | None:intergenic | 35.0% |
! | GAATATTTTCACACTGAAGG+TGG | - | chr8.4:71432904-71432923 | MS.gene81052:CDS | 35.0% |
! | GGAAACAAGTTGAATACCAT+AGG | + | chr8.4:71432197-71432216 | None:intergenic | 35.0% |
! | TACTCAATTCTATCCCGTTT+TGG | + | chr8.4:71432307-71432326 | None:intergenic | 35.0% |
! | TCCTGAACAGTTTTCTTCTT+TGG | + | chr8.4:71430702-71430721 | None:intergenic | 35.0% |
! | TCTTCAATTAGCTTAGGGTT+AGG | + | chr8.4:71430108-71430127 | None:intergenic | 35.0% |
! | TCTTTTTCCCTCTACCATAT+TGG | - | chr8.4:71431399-71431418 | MS.gene81052:intron | 35.0% |
! | TTTTCATGGCTCATGAGTTA+TGG | - | chr8.4:71431251-71431270 | MS.gene81052:intron | 35.0% |
!! | AAAGAGAGCACTAAAATTGC+AGG | + | chr8.4:71431384-71431403 | None:intergenic | 35.0% |
!! | TTTGCCTCAACCTTGTTATT+TGG | - | chr8.4:71430590-71430609 | MS.gene81052:intron | 35.0% |
!!! | GACACGGTTTTTTGAAATTC+TGG | - | chr8.4:71430934-71430953 | MS.gene81052:intron | 35.0% |
!!! | GCGTAGAATTTTTTACTGCA+CGG | - | chr8.4:71431199-71431218 | MS.gene81052:intron | 35.0% |
!!! | GTTAGGGTTTTGATTCTGAT+CGG | + | chr8.4:71430091-71430110 | None:intergenic | 35.0% |
AAACCACTATGAAAGCTGAC+TGG | - | chr8.4:71432794-71432813 | MS.gene81052:CDS | 40.0% | |
AAGCAATGAAGTTCCTTCCA+AGG | + | chr8.4:71430902-71430921 | None:intergenic | 40.0% | |
AGAGGTTGAAGAAGTTGGAT+GGG | - | chr8.4:71430619-71430638 | MS.gene81052:intron | 40.0% | |
AGATGATAACCTTCCACACA+AGG | - | chr8.4:71432334-71432353 | MS.gene81052:CDS | 40.0% | |
ATATCCCTTGAATGGTAGAG+GGG | + | chr8.4:71432433-71432452 | None:intergenic | 40.0% | |
ATGAGCCATGAAAATGCAGT+TGG | + | chr8.4:71431245-71431264 | None:intergenic | 40.0% | |
CAAATGGTTCGACATTTGAC+CGG | + | chr8.4:71430361-71430380 | None:intergenic | 40.0% | |
CAAGATGTCTTCAGTGAAAG+TGG | + | chr8.4:71432990-71433009 | None:intergenic | 40.0% | |
CAATATTCGGTTCTTCACCT+TGG | + | chr8.4:71433063-71433082 | None:intergenic | 40.0% | |
CAGATATGGATGGTGAACTA+AGG | + | chr8.4:71431762-71431781 | None:intergenic | 40.0% | |
CCATCCAAATAACAAGGTTG+AGG | + | chr8.4:71430597-71430616 | None:intergenic | 40.0% | |
CTCGGAATTCAGCAGAAAAA+TGG | - | chr8.4:71431634-71431653 | MS.gene81052:CDS | 40.0% | |
CTCTCACCATCCAAATAACA+AGG | + | chr8.4:71430603-71430622 | None:intergenic | 40.0% | |
CTGATCGGAAGAGTTGAAAA+CGG | + | chr8.4:71430076-71430095 | None:intergenic | 40.0% | |
CTGTTGAATCCACATAGAAC+AGG | - | chr8.4:71430183-71430202 | MS.gene81052:intron | 40.0% | |
CTTTCACTGAAGACATCTTG+CGG | - | chr8.4:71432990-71433009 | MS.gene81052:CDS | 40.0% | |
GAGTAAACCTAAGGCTGTTT+GGG | - | chr8.4:71430656-71430675 | MS.gene81052:intron | 40.0% | |
GCTGAGCAGTAAGCAAAATA+AGG | + | chr8.4:71430863-71430882 | None:intergenic | 40.0% | |
GTTGTACAGGCATCATATTG+AGG | - | chr8.4:71431665-71431684 | MS.gene81052:intron | 40.0% | |
TCATATTGAGGGAGATTCAC+AGG | - | chr8.4:71431677-71431696 | MS.gene81052:intron | 40.0% | |
TGAGTAAACCTAAGGCTGTT+TGG | - | chr8.4:71430655-71430674 | MS.gene81052:intron | 40.0% | |
TGCAAGGCTTAGACAACTAA+AGG | + | chr8.4:71432218-71432237 | None:intergenic | 40.0% | |
TGTGATGAGTATCTTTGCCA+AGG | - | chr8.4:71433043-71433062 | MS.gene81052:CDS | 40.0% | |
TTGTTGGCGTAAGAGGTAAA+TGG | + | chr8.4:71430037-71430056 | None:intergenic | 40.0% | |
TTTAAGAGCTGTAGGTCCTA+TGG | - | chr8.4:71432178-71432197 | MS.gene81052:CDS | 40.0% | |
! | AAGTGCCAACTGCATTTTCA+TGG | - | chr8.4:71431237-71431256 | MS.gene81052:intron | 40.0% |
! | AATGGGATGCTTTGTTGTAC+AGG | - | chr8.4:71431652-71431671 | MS.gene81052:intron | 40.0% |
! | CTCAATTCTATCCCGTTTTG+GGG | + | chr8.4:71432305-71432324 | None:intergenic | 40.0% |
! | GATGATGATGTTATGGCGAT+TGG | - | chr8.4:71430744-71430763 | MS.gene81052:intron | 40.0% |
! | TTGAAGAAGTTGGATGGGTT+GGG | - | chr8.4:71430624-71430643 | MS.gene81052:intron | 40.0% |
! | TTGAGAGACGTTGTTGTTGT+TGG | + | chr8.4:71430053-71430072 | None:intergenic | 40.0% |
!! | CCTCAACCTTGTTATTTGGA+TGG | - | chr8.4:71430594-71430613 | MS.gene81052:intron | 40.0% |
!! | CTTAAAAGGGCCTTTTCAAG+GGG | + | chr8.4:71432079-71432098 | None:intergenic | 40.0% |
!! | CTTGTTATTTGGATGGTGAG+AGG | - | chr8.4:71430601-71430620 | MS.gene81052:intron | 40.0% |
AAGCAGCAGATTGCATCTTG+AGG | - | chr8.4:71431487-71431506 | MS.gene81052:CDS | 45.0% | |
ACTGAAGGTGGAAGCTATGT+TGG | - | chr8.4:71432916-71432935 | MS.gene81052:CDS | 45.0% | |
AGCAGCAGATTGCATCTTGA+GGG | - | chr8.4:71431488-71431507 | MS.gene81052:CDS | 45.0% | |
ATCTTCCCCTCTACCATTCA+AGG | - | chr8.4:71432425-71432444 | MS.gene81052:CDS | 45.0% | |
ATGCTGAAGTGGAGCATGAA+TGG | - | chr8.4:71430778-71430797 | MS.gene81052:intron | 45.0% | |
CATCTTGAGGGTGATTGAGA+GGG | - | chr8.4:71431500-71431519 | MS.gene81052:CDS | 45.0% | |
CATGTCTAGCGTGTTCATTG+GGG | - | chr8.4:71432955-71432974 | MS.gene81052:CDS | 45.0% | |
CCATGTCTAGCGTGTTCATT+GGG | - | chr8.4:71432954-71432973 | MS.gene81052:CDS | 45.0% | |
GAGAGGTTGAAGAAGTTGGA+TGG | - | chr8.4:71430618-71430637 | MS.gene81052:intron | 45.0% | |
GAGGTAAATGGCGCGTAATT+CGG | + | chr8.4:71430025-71430044 | None:intergenic | 45.0% | |
GATGCAGCTGAAAGTGAAAC+TGG | - | chr8.4:71431552-71431571 | MS.gene81052:CDS | 45.0% | |
GTCTTGCAGTGATGAGCAAT+CGG | + | chr8.4:71430822-71430841 | None:intergenic | 45.0% | |
GTTGAAGAAGTTGGATGGGT+TGG | - | chr8.4:71430623-71430642 | MS.gene81052:intron | 45.0% | |
TAAACCTAAGGCTGTTTGGG+AGG | - | chr8.4:71430659-71430678 | MS.gene81052:intron | 45.0% | |
TAGTTGTCTAAGCCTTGCAG+CGG | - | chr8.4:71432219-71432238 | MS.gene81052:CDS | 45.0% | |
TCTTCAGTGAAAGTGGAACC+AGG | + | chr8.4:71432983-71433002 | None:intergenic | 45.0% | |
TCTTCCCCTCTACCATTCAA+GGG | - | chr8.4:71432426-71432445 | MS.gene81052:CDS | 45.0% | |
TGCTGAAGTGGAGCATGAAT+GGG | - | chr8.4:71430779-71430798 | MS.gene81052:intron | 45.0% | |
TGGTGAGAGGTTGAAGAAGT+TGG | - | chr8.4:71430614-71430633 | MS.gene81052:intron | 45.0% | |
! | AAGATGCAATCTGCTGCTTG+AGG | + | chr8.4:71431486-71431505 | None:intergenic | 45.0% |
! | AGATGCAATCTGCTGCTTGA+GGG | + | chr8.4:71431485-71431504 | None:intergenic | 45.0% |
! | CAGTCACTGATTGTGCTGAA+TGG | - | chr8.4:71431582-71431601 | MS.gene81052:CDS | 45.0% |
! | GCTTTGCATTTTCGGAGACA+CGG | - | chr8.4:71430918-71430937 | MS.gene81052:intron | 45.0% |
! | GTTGTTGTTGTTGGCGTAAG+AGG | + | chr8.4:71430044-71430063 | None:intergenic | 45.0% |
! | TTTTCTGCTGAATTCCGAGC+TGG | + | chr8.4:71431633-71431652 | None:intergenic | 45.0% |
!! | AAGTTGGATGGGTTGGGTTT+GGG | - | chr8.4:71430630-71430649 | MS.gene81052:intron | 45.0% |
!! | ACAACTGTTGATAATGCCCC+TGG | - | chr8.4:71432000-71432019 | MS.gene81052:intron | 45.0% |
!! | CATGAATGGGTTATGCAACC+GGG | - | chr8.4:71430792-71430811 | MS.gene81052:intron | 45.0% |
!! | CCTTTTCAAGGGGAAAAAGG+GGG | + | chr8.4:71432069-71432088 | None:intergenic | 45.0% |
!! | GCATGAATGGGTTATGCAAC+CGG | - | chr8.4:71430791-71430810 | MS.gene81052:intron | 45.0% |
!! | GCCTTTTCAAGGGGAAAAAG+GGG | + | chr8.4:71432070-71432089 | None:intergenic | 45.0% |
!! | GGCCTTTTCAAGGGGAAAAA+GGG | + | chr8.4:71432071-71432090 | None:intergenic | 45.0% |
!! | TGAAAGGAGAGTGCTCCTTT+GGG | + | chr8.4:71432364-71432383 | None:intergenic | 45.0% |
AAGCTTGTGACCTTGCGCTA+AGG | - | chr8.4:71431921-71431940 | MS.gene81052:intron | 50.0% | |
AGACATCTTGCGGCTGAGAA+AGG | - | chr8.4:71433000-71433019 | MS.gene81052:CDS | 50.0% | |
AGTTGTCTAAGCCTTGCAGC+GGG | - | chr8.4:71432220-71432239 | MS.gene81052:CDS | 50.0% | |
ATGGATGGTGAACTAAGGCC+AGG | + | chr8.4:71431757-71431776 | None:intergenic | 50.0% | |
CACGCTAGACATGGCACATA+TGG | + | chr8.4:71432948-71432967 | None:intergenic | 50.0% | |
CACTTGTAATTCGGCCAGCT+CGG | - | chr8.4:71431616-71431635 | MS.gene81052:CDS | 50.0% | |
CCCAATGAACACGCTAGACA+TGG | + | chr8.4:71432957-71432976 | None:intergenic | 50.0% | |
GCATCTTGAGGGTGATTGAG+AGG | - | chr8.4:71431499-71431518 | MS.gene81052:CDS | 50.0% | |
GCCATGTCTAGCGTGTTCAT+TGG | - | chr8.4:71432953-71432972 | MS.gene81052:CDS | 50.0% | |
GGGATGGGGAAAAAGCAACT+TGG | + | chr8.4:71431465-71431484 | None:intergenic | 50.0% | |
TAAGGCTGTTTGGGAGGATG+AGG | - | chr8.4:71430665-71430684 | MS.gene81052:intron | 50.0% | |
TCATCCTCCCAAACAGCCTT+AGG | + | chr8.4:71430666-71430685 | None:intergenic | 50.0% | |
TGGCCAGTCAGCTTTCATAG+TGG | + | chr8.4:71432800-71432819 | None:intergenic | 50.0% | |
TTTCGCGGCGATTCTGAACA+GGG | - | chr8.4:71430404-71430423 | MS.gene81052:intron | 50.0% | |
TTTGGGAGGATGAGGATACG+AGG | - | chr8.4:71430673-71430692 | MS.gene81052:intron | 50.0% | |
! | AATCTGCTGCTTGAGGGATG+GGG | + | chr8.4:71431479-71431498 | None:intergenic | 50.0% |
! | CAATCTGCTGCTTGAGGGAT+GGG | + | chr8.4:71431480-71431499 | None:intergenic | 50.0% |
! | CCCCCTTTTTCCCCTTGAAA+AGG | - | chr8.4:71432066-71432085 | MS.gene81052:intron | 50.0% |
! | GGCGATTCTGAACAGGGTTT+TGG | - | chr8.4:71430410-71430429 | MS.gene81052:intron | 50.0% |
! | TTTTCGCGGCGATTCTGAAC+AGG | - | chr8.4:71430403-71430422 | MS.gene81052:intron | 50.0% |
!! | GAAAGGAGAGTGCTCCTTTG+GGG | + | chr8.4:71432363-71432382 | None:intergenic | 50.0% |
!! | GAAGTTGGATGGGTTGGGTT+TGG | - | chr8.4:71430629-71430648 | MS.gene81052:intron | 50.0% |
!! | GGGCCTTTTCAAGGGGAAAA+AGG | + | chr8.4:71432072-71432091 | None:intergenic | 50.0% |
!! | GTGAAAGGAGAGTGCTCCTT+TGG | + | chr8.4:71432365-71432384 | None:intergenic | 50.0% |
AGAAGAGGAGCCTTAGCGCA+AGG | + | chr8.4:71431934-71431953 | None:intergenic | 55.0% | |
CGAGCTGGCCGAATTACAAG+TGG | + | chr8.4:71431618-71431637 | None:intergenic | 55.0% | |
CTTGCGGCTGAGAAAGGACT+GGG | - | chr8.4:71433006-71433025 | MS.gene81052:CDS | 55.0% | |
TCCACACAAGGCTACCCCAA+AGG | - | chr8.4:71432346-71432365 | MS.gene81052:CDS | 55.0% | |
TCTAAGCCTTGCAGCGGGAT+TGG | - | chr8.4:71432225-71432244 | MS.gene81052:CDS | 55.0% | |
TCTTGCGGCTGAGAAAGGAC+TGG | - | chr8.4:71433005-71433024 | MS.gene81052:CDS | 55.0% | |
TGATGAGCAATCGGTCCACC+CGG | + | chr8.4:71430813-71430832 | None:intergenic | 55.0% | |
TTGCGGCTGAGAAAGGACTG+GGG | - | chr8.4:71433007-71433026 | MS.gene81052:CDS | 55.0% | |
! | GCAATCTGCTGCTTGAGGGA+TGG | + | chr8.4:71431481-71431500 | None:intergenic | 55.0% |
!! | GAATGGGTTATGCAACCGGG+TGG | - | chr8.4:71430795-71430814 | MS.gene81052:intron | 55.0% |
!! | TCCTTTGGGGTAGCCTTGTG+TGG | + | chr8.4:71432350-71432369 | None:intergenic | 55.0% |
!! | TTGGGGTAGCCTTGTGTGGA+AGG | + | chr8.4:71432346-71432365 | None:intergenic | 55.0% |
CTGAAGCCAATCCCGCTGCA+AGG | + | chr8.4:71432234-71432253 | None:intergenic | 60.0% | |
! | AGCGTGTTCATTGGGGCACC+TGG | - | chr8.4:71432962-71432981 | MS.gene81052:CDS | 60.0% |
!! | AGCGGGATTGGCTTCAGCCT+GGG | - | chr8.4:71432237-71432256 | MS.gene81052:CDS | 60.0% |
!! | CAGCGGGATTGGCTTCAGCC+TGG | - | chr8.4:71432236-71432255 | MS.gene81052:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 71430012 | 71433099 | 71430012 | ID=MS.gene81052 |
chr8.4 | mRNA | 71430012 | 71433099 | 71430012 | ID=MS.gene81052.t1;Parent=MS.gene81052 |
chr8.4 | exon | 71432156 | 71433099 | 71432156 | ID=MS.gene81052.t1.exon1;Parent=MS.gene81052.t1 |
chr8.4 | CDS | 71432156 | 71433099 | 71432156 | ID=cds.MS.gene81052.t1;Parent=MS.gene81052.t1 |
chr8.4 | exon | 71431413 | 71431662 | 71431413 | ID=MS.gene81052.t1.exon2;Parent=MS.gene81052.t1 |
chr8.4 | CDS | 71431413 | 71431662 | 71431413 | ID=cds.MS.gene81052.t1;Parent=MS.gene81052.t1 |
chr8.4 | exon | 71430012 | 71430188 | 71430012 | ID=MS.gene81052.t1.exon3;Parent=MS.gene81052.t1 |
chr8.4 | CDS | 71430012 | 71430188 | 71430012 | ID=cds.MS.gene81052.t1;Parent=MS.gene81052.t1 |
Gene Sequence |
Protein sequence |