Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81064.t1 | XP_013444504.1 | 94.7 | 247 | 13 | 0 | 3 | 249 | 83 | 329 | 4.20E-137 | 497.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81064.t1 | O74507 | 23.9 | 255 | 162 | 10 | 4 | 235 | 80 | 325 | 3.2e-08 | 60.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81064.t1 | G7ZZ33 | 94.7 | 247 | 13 | 0 | 3 | 249 | 83 | 329 | 3.0e-137 | 497.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050991 | MS.gene81064 | 0.900266 | 8.70E-78 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81064.t1 | MTR_8g023760 | 94.737 | 247 | 13 | 0 | 3 | 249 | 83 | 329 | 6.90e-175 | 484 |
| MS.gene81064.t1 | MTR_7g117475 | 69.412 | 255 | 61 | 4 | 3 | 249 | 69 | 314 | 5.07e-128 | 365 |
| MS.gene81064.t1 | MTR_8g107030 | 31.034 | 203 | 103 | 9 | 57 | 239 | 87 | 272 | 1.98e-12 | 66.2 |
| MS.gene81064.t1 | MTR_8g107030 | 31.034 | 203 | 103 | 9 | 57 | 239 | 118 | 303 | 2.87e-12 | 65.9 |
| MS.gene81064.t1 | MTR_8g107030 | 30.601 | 183 | 101 | 8 | 57 | 230 | 87 | 252 | 9.90e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81064.t1 | AT2G46890 | 71.255 | 247 | 71 | 0 | 3 | 249 | 76 | 322 | 8.21e-136 | 385 |
| MS.gene81064.t1 | AT1G18180 | 32.394 | 213 | 119 | 8 | 30 | 234 | 61 | 256 | 1.37e-13 | 69.3 |
| MS.gene81064.t1 | AT1G18180 | 32.394 | 213 | 119 | 8 | 30 | 234 | 61 | 256 | 1.53e-13 | 69.3 |
| MS.gene81064.t1 | AT1G73650 | 32.547 | 212 | 120 | 8 | 30 | 234 | 61 | 256 | 2.78e-11 | 62.8 |
| MS.gene81064.t1 | AT1G73650 | 32.547 | 212 | 120 | 8 | 30 | 234 | 61 | 256 | 2.80e-11 | 62.8 |
| MS.gene81064.t1 | AT1G73650 | 32.547 | 212 | 120 | 8 | 30 | 234 | 61 | 256 | 2.91e-11 | 62.8 |
Find 61 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACATGGATGGACCTTTAT+TGG | 0.173583 | 8.4:-71293201 | MS.gene81064:CDS |
| ATTACTTTAGACGTGAAAAT+TGG | 0.244208 | 8.4:-71295073 | MS.gene81064:CDS |
| CAACAAGCCTTTGAGTATCT+TGG | 0.301287 | 8.4:-71293442 | MS.gene81064:CDS |
| GCCATTGTTGTTTGTTTAAG+TGG | 0.340682 | 8.4:-71293411 | MS.gene81064:CDS |
| GACGCTGTGGTGGTGGGGAC+TGG | 0.351750 | 8.4:-71293244 | MS.gene81064:CDS |
| ACAGGGATCACTGTCCAATA+TGG | 0.356410 | 8.4:+71295203 | None:intergenic |
| GTGTCAAGTACAGGGATTAC+AGG | 0.360789 | 8.4:+71293309 | None:intergenic |
| ATGGACCTTTATTGGAGCTT+TGG | 0.373438 | 8.4:-71293193 | MS.gene81064:CDS |
| TGCTGTTTATGTCTCTCAGC+AGG | 0.384130 | 8.4:-71294970 | MS.gene81064:intron |
| ATTAACCAAAGCTCCAATAA+AGG | 0.385986 | 8.4:+71293188 | None:intergenic |
| TGCAGATGATTGATCCATAT+TGG | 0.392989 | 8.4:-71295217 | MS.gene81064:CDS |
| CTTTGGCTCAATATGATTTG+TGG | 0.396285 | 8.4:-71295151 | MS.gene81064:CDS |
| ACAAAGTGCACAACATATAA+AGG | 0.399002 | 8.4:+71293465 | None:intergenic |
| TTACTATGCAACACACCCTT+TGG | 0.420431 | 8.4:-71295168 | MS.gene81064:CDS |
| ACTGAGATGAGTCAACAATA+TGG | 0.420703 | 8.4:-71295020 | MS.gene81064:CDS |
| TTTGAGTATCTTGGACTTGG+TGG | 0.426220 | 8.4:-71293433 | MS.gene81064:CDS |
| TTGGTGAGACGCTGTGGTGG+TGG | 0.429994 | 8.4:-71293251 | MS.gene81064:CDS |
| TAGACGTGAAAATTGGCAAT+GGG | 0.432505 | 8.4:-71295066 | MS.gene81064:CDS |
| GCCTTTGAGTATCTTGGACT+TGG | 0.442227 | 8.4:-71293436 | MS.gene81064:CDS |
| GGGGACTGGTTGTGTTTGCA+TGG | 0.461450 | 8.4:-71293230 | MS.gene81064:CDS |
| TGGTGAGACGCTGTGGTGGT+GGG | 0.471699 | 8.4:-71293250 | MS.gene81064:CDS |
| AGCGTCTCACCAAAGTAATT+CGG | 0.476940 | 8.4:+71293261 | None:intergenic |
| AGCCGGCGTCCGAATTACTT+TGG | 0.477007 | 8.4:-71293270 | MS.gene81064:CDS |
| AGCTTATGTGACTAGGCTTG+TGG | 0.481619 | 8.4:-71293154 | MS.gene81064:CDS |
| CTGTACTTGACACTGGCCTA+TGG | 0.484981 | 8.4:-71293299 | MS.gene81064:CDS |
| TAGTAATGAACAAGCATCAC+AGG | 0.485910 | 8.4:+71295185 | None:intergenic |
| AACAACAAGTTCAAAGAGCT+TGG | 0.488952 | 8.4:-71293336 | MS.gene81064:CDS |
| CAACTTCAGCGTGGATACCT+TGG | 0.496899 | 8.4:-71293074 | MS.gene81064:CDS |
| TGTGTTTAGCTTATGTGACT+AGG | 0.502231 | 8.4:-71293161 | MS.gene81064:CDS |
| CATAGGCCAGTGTCAAGTAC+AGG | 0.512081 | 8.4:+71293300 | None:intergenic |
| CACAAATCATATTGAGCCAA+AGG | 0.525947 | 8.4:+71295152 | None:intergenic |
| CATGGAACCTTGGACATGGA+TGG | 0.532497 | 8.4:-71293212 | MS.gene81064:CDS |
| GTTGTGTTTGCATGGAACCT+TGG | 0.534053 | 8.4:-71293222 | MS.gene81064:CDS |
| AATGGGGTGCTAGAGAAGAT+TGG | 0.536653 | 8.4:-71295049 | MS.gene81064:CDS |
| GGTGAGACGCTGTGGTGGTG+GGG | 0.545609 | 8.4:-71293249 | MS.gene81064:CDS |
| AATATGGAAAACATTGGTGG+TGG | 0.549525 | 8.4:-71295004 | MS.gene81064:CDS |
| AACAATATGGAAAACATTGG+TGG | 0.551861 | 8.4:-71295007 | MS.gene81064:CDS |
| ACAAATCATATTGAGCCAAA+GGG | 0.557331 | 8.4:+71295153 | None:intergenic |
| AGTGCACAACATATAAAGGA+AGG | 0.575974 | 8.4:+71293469 | None:intergenic |
| GAAGGAAATGACTTAAACCA+AGG | 0.582801 | 8.4:+71293057 | None:intergenic |
| CTGGCCTATGGTATTACAGC+CGG | 0.588511 | 8.4:-71293287 | MS.gene81064:CDS |
| TGGCTCAATATGATTTGTGG+AGG | 0.590226 | 8.4:-71295148 | MS.gene81064:CDS |
| GTAATCCCTGTACTTGACAC+TGG | 0.592824 | 8.4:-71293306 | MS.gene81064:CDS |
| ATATGGAAAACATTGGTGGT+GGG | 0.596512 | 8.4:-71295003 | MS.gene81064:CDS |
| GTCAACAATATGGAAAACAT+TGG | 0.610761 | 8.4:-71295010 | MS.gene81064:CDS |
| ACCAAGTCCAAGATACTCAA+AGG | 0.615189 | 8.4:+71293435 | None:intergenic |
| TTTGCATGGAACCTTGGACA+TGG | 0.616196 | 8.4:-71293216 | MS.gene81064:CDS |
| TTAGACGTGAAAATTGGCAA+TGG | 0.620026 | 8.4:-71295067 | MS.gene81064:CDS |
| TAAAGGTCCATCCATGTCCA+AGG | 0.620673 | 8.4:+71293205 | None:intergenic |
| GCCACTTAAACAAACAACAA+TGG | 0.625714 | 8.4:+71293410 | None:intergenic |
| ATAGGCCAGTGTCAAGTACA+GGG | 0.634937 | 8.4:+71293301 | None:intergenic |
| CACCAAAGTAATTCGGACGC+CGG | 0.635129 | 8.4:+71293268 | None:intergenic |
| GTGCACAACATATAAAGGAA+GGG | 0.637619 | 8.4:+71293470 | None:intergenic |
| ATTACTTTGGTGAGACGCTG+TGG | 0.656576 | 8.4:-71293257 | MS.gene81064:CDS |
| TTATGTGACTAGGCTTGTGG+AGG | 0.657735 | 8.4:-71293151 | MS.gene81064:CDS |
| AGTAATGAACAAGCATCACA+GGG | 0.679888 | 8.4:+71295186 | None:intergenic |
| AGACGTGAAAATTGGCAATG+GGG | 0.680331 | 8.4:-71295065 | MS.gene81064:CDS |
| GACGCCGGCTGTAATACCAT+AGG | 0.684582 | 8.4:+71293283 | None:intergenic |
| ACTTTGGTGAGACGCTGTGG+TGG | 0.689623 | 8.4:-71293254 | MS.gene81064:CDS |
| ATCAGAAGACAACTTCAGCG+TGG | 0.695728 | 8.4:-71293083 | MS.gene81064:CDS |
| AGTCACATAAGCTAAACACA+AGG | 0.719129 | 8.4:+71293164 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATATCATTGTGTT+TGG | - | chr8.4:71294438-71294457 | MS.gene81064:intron | 15.0% |
| !!! | ACTTTTTTCTAACAATTAAA+TGG | - | chr8.4:71294345-71294364 | MS.gene81064:intron | 15.0% |
| !!! | ATTGAAATTTTACGATTTTA+GGG | - | chr8.4:71293606-71293625 | MS.gene81064:intron | 15.0% |
| !!! | ATTTTTTTTATAGATATGAC+TGG | + | chr8.4:71293963-71293982 | None:intergenic | 15.0% |
| !!! | CAATGATATTAATTTTATCA+AGG | + | chr8.4:71294434-71294453 | None:intergenic | 15.0% |
| !!! | TGTTAGTTATTTCTATTTTT+CGG | - | chr8.4:71293728-71293747 | MS.gene81064:intron | 15.0% |
| !! | AAAATAAGTGAATAATGTCT+GGG | - | chr8.4:71293544-71293563 | MS.gene81064:intron | 20.0% |
| !! | AAATATAGAAGATTAAGAGA+TGG | + | chr8.4:71294531-71294550 | None:intergenic | 20.0% |
| !! | TTGAATTATATATAATTCGG+AGG | - | chr8.4:71293635-71293654 | MS.gene81064:intron | 20.0% |
| !!! | ATTAACATTTTGCAATTTCA+AGG | + | chr8.4:71293452-71293471 | None:intergenic | 20.0% |
| !!! | GATTGAAATTTTACGATTTT+AGG | - | chr8.4:71293605-71293624 | MS.gene81064:intron | 20.0% |
| !!! | GTCTATTTTTATTATTAGTC+AGG | + | chr8.4:71294216-71294235 | None:intergenic | 20.0% |
| !!! | TGTCTATTTGGTTTAATTTT+TGG | - | chr8.4:71293347-71293366 | MS.gene81064:CDS | 20.0% |
| !!! | TTCTTAATTTTAACATCTGA+AGG | + | chr8.4:71295214-71295233 | None:intergenic | 20.0% |
| !!! | TTGCTTATATTTTATATCAG+AGG | + | chr8.4:71293826-71293845 | None:intergenic | 20.0% |
| !!! | TTTGGAGTAAATAATCAATT+TGG | - | chr8.4:71293365-71293384 | MS.gene81064:CDS | 20.0% |
| ! | AAAGATGTTTGAACGATTAA+CGG | + | chr8.4:71294093-71294112 | None:intergenic | 25.0% |
| ! | AATAATTGGCACATTCTTAA+AGG | + | chr8.4:71293767-71293786 | None:intergenic | 25.0% |
| ! | ATCTATATTTCCTTTGTGTT+AGG | - | chr8.4:71294574-71294593 | MS.gene81064:intron | 25.0% |
| ! | ATTACTTTAGACGTGAAAAT+TGG | - | chr8.4:71293177-71293196 | MS.gene81064:CDS | 25.0% |
| ! | GAAAATAAGTGAATAATGTC+TGG | - | chr8.4:71293543-71293562 | MS.gene81064:intron | 25.0% |
| ! | TCAAAAAAAATTGTCATGTG+CGG | + | chr8.4:71293793-71293812 | None:intergenic | 25.0% |
| ! | TGATATCAGATTATGAAAGA+GGG | - | chr8.4:71293574-71293593 | MS.gene81064:intron | 25.0% |
| ! | TGTTTGATGAATTGTCTATT+TGG | - | chr8.4:71293335-71293354 | MS.gene81064:CDS | 25.0% |
| ! | TTGATATCAGATTATGAAAG+AGG | - | chr8.4:71293573-71293592 | MS.gene81064:intron | 25.0% |
| !! | TGCTTATATTTTGTAACTGA+GGG | - | chr8.4:71293909-71293928 | MS.gene81064:intron | 25.0% |
| !! | TTGCTTATATTTTGTAACTG+AGG | - | chr8.4:71293908-71293927 | MS.gene81064:intron | 25.0% |
| AACAATATGGAAAACATTGG+TGG | - | chr8.4:71293243-71293262 | MS.gene81064:CDS | 30.0% | |
| AATCAAATCCTTTCCTTTGT+TGG | - | chr8.4:71293469-71293488 | MS.gene81064:CDS | 30.0% | |
| AATTGCAATGGAAATCAACA+CGG | - | chr8.4:71294669-71294688 | MS.gene81064:intron | 30.0% | |
| ACAAAGTGCACAACATATAA+AGG | + | chr8.4:71294788-71294807 | None:intergenic | 30.0% | |
| ACAAATCATATTGAGCCAAA+GGG | + | chr8.4:71293100-71293119 | None:intergenic | 30.0% | |
| AGAGTGAATTTGAATTGCAA+TGG | - | chr8.4:71294657-71294676 | MS.gene81064:intron | 30.0% | |
| ATTAACCAAAGCTCCAATAA+AGG | + | chr8.4:71295065-71295084 | None:intergenic | 30.0% | |
| CAATTCATCAAACATGTTCA+AGG | + | chr8.4:71293329-71293348 | None:intergenic | 30.0% | |
| GATACAGTTCTACAATTTCA+GGG | + | chr8.4:71293392-71293411 | None:intergenic | 30.0% | |
| GTCAACAATATGGAAAACAT+TGG | - | chr8.4:71293240-71293259 | MS.gene81064:CDS | 30.0% | |
| TGATACAGTTCTACAATTTC+AGG | + | chr8.4:71293393-71293412 | None:intergenic | 30.0% | |
| TGGCGATAAAAACATTTCAT+AGG | - | chr8.4:71294037-71294056 | MS.gene81064:intron | 30.0% | |
| ! | AGATTGTGATTTTGTTGAGT+TGG | - | chr8.4:71293129-71293148 | MS.gene81064:CDS | 30.0% |
| ! | GATTGTGATTTTGTTGAGTT+GGG | - | chr8.4:71293130-71293149 | MS.gene81064:CDS | 30.0% |
| ! | TATTTTGTGAGTTGTTAGTC+AGG | - | chr8.4:71294634-71294653 | MS.gene81064:intron | 30.0% |
| ! | TGTGAAGAATTGATTTCTGT+AGG | - | chr8.4:71294377-71294396 | MS.gene81064:intron | 30.0% |
| ! | TTTTCAATGCACAAATGACA+AGG | + | chr8.4:71294717-71294736 | None:intergenic | 30.0% |
| !! | TGACATTAAGTTGGTATTGT+CGG | - | chr8.4:71293510-71293529 | MS.gene81064:intron | 30.0% |
| !! | TTTGTGCAGATGTTTTTGAT+TGG | - | chr8.4:71294752-71294771 | MS.gene81064:intron | 30.0% |
| !!! | ATTTCTATTTTTCGGTGTTG+AGG | - | chr8.4:71293736-71293755 | MS.gene81064:intron | 30.0% |
| !!! | TTTCTATTTTTCGGTGTTGA+GGG | - | chr8.4:71293737-71293756 | MS.gene81064:intron | 30.0% |
| AAATAACAGGCCTAACACAA+AGG | + | chr8.4:71294587-71294606 | None:intergenic | 35.0% | |
| AACAACAAGTTCAAAGAGCT+TGG | - | chr8.4:71294914-71294933 | MS.gene81064:intron | 35.0% | |
| AATATGGAAAACATTGGTGG+TGG | - | chr8.4:71293246-71293265 | MS.gene81064:CDS | 35.0% | |
| ACGTGTGTGAAATTTGAACT+TGG | + | chr8.4:71294241-71294260 | None:intergenic | 35.0% | |
| ACTGAGATGAGTCAACAATA+TGG | - | chr8.4:71293230-71293249 | MS.gene81064:CDS | 35.0% | |
| AGTAATGAACAAGCATCACA+GGG | + | chr8.4:71293067-71293086 | None:intergenic | 35.0% | |
| AGTCACATAAGCTAAACACA+AGG | + | chr8.4:71295089-71295108 | None:intergenic | 35.0% | |
| AGTGCACAACATATAAAGGA+AGG | + | chr8.4:71294784-71294803 | None:intergenic | 35.0% | |
| CACAAATCATATTGAGCCAA+AGG | + | chr8.4:71293101-71293120 | None:intergenic | 35.0% | |
| CTTGTCTCACTGAAATTTGA+TGG | - | chr8.4:71294017-71294036 | MS.gene81064:intron | 35.0% | |
| GAAGGAAATGACTTAAACCA+AGG | + | chr8.4:71295196-71295215 | None:intergenic | 35.0% | |
| GCCACTTAAACAAACAACAA+TGG | + | chr8.4:71294843-71294862 | None:intergenic | 35.0% | |
| GGACTAAAGTGACATTAAGT+TGG | - | chr8.4:71293501-71293520 | MS.gene81064:intron | 35.0% | |
| GTGCACAACATATAAAGGAA+GGG | + | chr8.4:71294783-71294802 | None:intergenic | 35.0% | |
| TAGAATGTAACCACATGTGT+TGG | + | chr8.4:71293707-71293726 | None:intergenic | 35.0% | |
| TAGACGTGAAAATTGGCAAT+GGG | - | chr8.4:71293184-71293203 | MS.gene81064:CDS | 35.0% | |
| TAGTAATGAACAAGCATCAC+AGG | + | chr8.4:71293068-71293087 | None:intergenic | 35.0% | |
| TGATTCCGCTGAAAAATAAC+AGG | + | chr8.4:71294600-71294619 | None:intergenic | 35.0% | |
| TGCAATTTCAAGGATCACTT+TGG | + | chr8.4:71293442-71293461 | None:intergenic | 35.0% | |
| TGCAGATGATTGATCCATAT+TGG | - | chr8.4:71293033-71293052 | MS.gene81064:CDS | 35.0% | |
| TTAGACGTGAAAATTGGCAA+TGG | - | chr8.4:71293183-71293202 | MS.gene81064:CDS | 35.0% | |
| ! | ATATGGAAAACATTGGTGGT+GGG | - | chr8.4:71293247-71293266 | MS.gene81064:CDS | 35.0% |
| ! | CTTTGGCTCAATATGATTTG+TGG | - | chr8.4:71293099-71293118 | MS.gene81064:CDS | 35.0% |
| ! | TGTGTTTAGCTTATGTGACT+AGG | - | chr8.4:71295089-71295108 | MS.gene81064:CDS | 35.0% |
| !! | GCCATTGTTGTTTGTTTAAG+TGG | - | chr8.4:71294839-71294858 | MS.gene81064:intron | 35.0% |
| !! | GGAATTTCTAGTTTCAGCTA+TGG | - | chr8.4:71294459-71294478 | MS.gene81064:intron | 35.0% |
| !! | TGTTGTGTTAGCGTTGTTTT+TGG | - | chr8.4:71294268-71294287 | MS.gene81064:intron | 35.0% |
| !!! | TGATTTTGTTGAGTTGGGTT+TGG | - | chr8.4:71293135-71293154 | MS.gene81064:CDS | 35.0% |
| !!! | TTAGGCCTGTTATTTTTCAG+CGG | - | chr8.4:71294592-71294611 | MS.gene81064:intron | 35.0% |
| !!! | TTCTATTTTTCGGTGTTGAG+GGG | - | chr8.4:71293738-71293757 | MS.gene81064:intron | 35.0% |
| ACCAAGTCCAAGATACTCAA+AGG | + | chr8.4:71294818-71294837 | None:intergenic | 40.0% | |
| AGACGTGAAAATTGGCAATG+GGG | - | chr8.4:71293185-71293204 | MS.gene81064:CDS | 40.0% | |
| AGCGTCTCACCAAAGTAATT+CGG | + | chr8.4:71294992-71295011 | None:intergenic | 40.0% | |
| ATGGACCTTTATTGGAGCTT+TGG | - | chr8.4:71295057-71295076 | MS.gene81064:CDS | 40.0% | |
| CAAATCCTTTCCTTTGTTGG+TGG | - | chr8.4:71293472-71293491 | MS.gene81064:CDS | 40.0% | |
| CAACAAGCCTTTGAGTATCT+TGG | - | chr8.4:71294808-71294827 | MS.gene81064:intron | 40.0% | |
| GTCATGTGCGGACAAATAAT+TGG | + | chr8.4:71293781-71293800 | None:intergenic | 40.0% | |
| TAGTGGGATCTGACATGTTA+CGG | - | chr8.4:71293672-71293691 | MS.gene81064:intron | 40.0% | |
| TATCACCACCAACAAAGGAA+AGG | + | chr8.4:71293480-71293499 | None:intergenic | 40.0% | |
| TTACTATGCAACACACCCTT+TGG | - | chr8.4:71293082-71293101 | MS.gene81064:CDS | 40.0% | |
| TTTGAGTATCTTGGACTTGG+TGG | - | chr8.4:71294817-71294836 | MS.gene81064:intron | 40.0% | |
| ! | TGGCTCAATATGATTTGTGG+AGG | - | chr8.4:71293102-71293121 | MS.gene81064:CDS | 40.0% |
| !! | TTCCTTTGTTGGTGGTGATA+TGG | - | chr8.4:71293480-71293499 | MS.gene81064:CDS | 40.0% |
| ACAGGGATCACTGTCCAATA+TGG | + | chr8.4:71293050-71293069 | None:intergenic | 45.0% | |
| ACATGTCAGATCCCACTAAG+CGG | + | chr8.4:71293670-71293689 | None:intergenic | 45.0% | |
| AGCTTATGTGACTAGGCTTG+TGG | - | chr8.4:71295096-71295115 | MS.gene81064:CDS | 45.0% | |
| ATAGGCCAGTGTCAAGTACA+GGG | + | chr8.4:71294952-71294971 | None:intergenic | 45.0% | |
| ATCAGAAGACAACTTCAGCG+TGG | - | chr8.4:71295167-71295186 | MS.gene81064:CDS | 45.0% | |
| ATTACTTTGGTGAGACGCTG+TGG | - | chr8.4:71294993-71295012 | MS.gene81064:CDS | 45.0% | |
| GCCTTTGAGTATCTTGGACT+TGG | - | chr8.4:71294814-71294833 | MS.gene81064:intron | 45.0% | |
| GGACATGGATGGACCTTTAT+TGG | - | chr8.4:71295049-71295068 | MS.gene81064:CDS | 45.0% | |
| GTAATCCCTGTACTTGACAC+TGG | - | chr8.4:71294944-71294963 | MS.gene81064:intron | 45.0% | |
| GTCCATATCACCACCAACAA+AGG | + | chr8.4:71293485-71293504 | None:intergenic | 45.0% | |
| GTGTCAAGTACAGGGATTAC+AGG | + | chr8.4:71294944-71294963 | None:intergenic | 45.0% | |
| GTTGTGTTTGCATGGAACCT+TGG | - | chr8.4:71295028-71295047 | MS.gene81064:CDS | 45.0% | |
| GTTTATGTCTCTCAGCAGGT+TGG | - | chr8.4:71293284-71293303 | MS.gene81064:CDS | 45.0% | |
| TAAAGGTCCATCCATGTCCA+AGG | + | chr8.4:71295048-71295067 | None:intergenic | 45.0% | |
| TTATGTGACTAGGCTTGTGG+AGG | - | chr8.4:71295099-71295118 | MS.gene81064:CDS | 45.0% | |
| TTTGCATGGAACCTTGGACA+TGG | - | chr8.4:71295034-71295053 | MS.gene81064:CDS | 45.0% | |
| ! | AATGGGGTGCTAGAGAAGAT+TGG | - | chr8.4:71293201-71293220 | MS.gene81064:CDS | 45.0% |
| ! | GTAACCACATGTGTTGGTGT+TGG | + | chr8.4:71293701-71293720 | None:intergenic | 45.0% |
| ! | TGCTGTTTATGTCTCTCAGC+AGG | - | chr8.4:71293280-71293299 | MS.gene81064:CDS | 45.0% |
| !!! | TCTCTCAGCAGGTTGGTTTT+TGG | - | chr8.4:71293291-71293310 | MS.gene81064:CDS | 45.0% |
| !!! | ATTTTGAATTATATATAATT+CGG | - | chr8.4:71293632-71293651 | MS.gene81064:intron | 5.0% |
| AGGACTAAGTTCCCGCTTAG+TGG | - | chr8.4:71293655-71293674 | MS.gene81064:intron | 50.0% | |
| CAACTTCAGCGTGGATACCT+TGG | - | chr8.4:71295176-71295195 | MS.gene81064:CDS | 50.0% | |
| CACCAAAGTAATTCGGACGC+CGG | + | chr8.4:71294985-71295004 | None:intergenic | 50.0% | |
| CATAGGCCAGTGTCAAGTAC+AGG | + | chr8.4:71294953-71294972 | None:intergenic | 50.0% | |
| CATGGAACCTTGGACATGGA+TGG | - | chr8.4:71295038-71295057 | MS.gene81064:CDS | 50.0% | |
| CATGTCAGATCCCACTAAGC+GGG | + | chr8.4:71293669-71293688 | None:intergenic | 50.0% | |
| CTGGCCTATGGTATTACAGC+CGG | - | chr8.4:71294963-71294982 | MS.gene81064:intron | 50.0% | |
| GGACTAAGTTCCCGCTTAGT+GGG | - | chr8.4:71293656-71293675 | MS.gene81064:intron | 50.0% | |
| GTGTCCAACACCAACACATG+TGG | - | chr8.4:71293694-71293713 | MS.gene81064:intron | 50.0% | |
| ! | CTGTACTTGACACTGGCCTA+TGG | - | chr8.4:71294951-71294970 | MS.gene81064:intron | 50.0% |
| ACTTTGGTGAGACGCTGTGG+TGG | - | chr8.4:71294996-71295015 | MS.gene81064:CDS | 55.0% | |
| AGCCGGCGTCCGAATTACTT+TGG | - | chr8.4:71294980-71294999 | MS.gene81064:CDS | 55.0% | |
| ! | GACGCCGGCTGTAATACCAT+AGG | + | chr8.4:71294970-71294989 | None:intergenic | 55.0% |
| !! | GGGGACTGGTTGTGTTTGCA+TGG | - | chr8.4:71295020-71295039 | MS.gene81064:CDS | 55.0% |
| TGGTGAGACGCTGTGGTGGT+GGG | - | chr8.4:71295000-71295019 | MS.gene81064:CDS | 60.0% | |
| TTGGTGAGACGCTGTGGTGG+TGG | - | chr8.4:71294999-71295018 | MS.gene81064:CDS | 60.0% | |
| ! | GGTGAGACGCTGTGGTGGTG+GGG | - | chr8.4:71295001-71295020 | MS.gene81064:CDS | 65.0% |
| !! | GACGCTGTGGTGGTGGGGAC+TGG | - | chr8.4:71295006-71295025 | MS.gene81064:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 71293032 | 71295240 | 71293032 | ID=MS.gene81064 |
| chr8.4 | mRNA | 71293032 | 71295240 | 71293032 | ID=MS.gene81064.t1;Parent=MS.gene81064 |
| chr8.4 | exon | 71294971 | 71295240 | 71294971 | ID=MS.gene81064.t1.exon1;Parent=MS.gene81064.t1 |
| chr8.4 | CDS | 71294971 | 71295240 | 71294971 | ID=cds.MS.gene81064.t1;Parent=MS.gene81064.t1 |
| chr8.4 | exon | 71293032 | 71293511 | 71293032 | ID=MS.gene81064.t1.exon2;Parent=MS.gene81064.t1 |
| chr8.4 | CDS | 71293032 | 71293511 | 71293032 | ID=cds.MS.gene81064.t1;Parent=MS.gene81064.t1 |
| Gene Sequence |
| Protein sequence |
