Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050991.t1 | XP_013444504.1 | 94.3 | 247 | 14 | 0 | 1 | 247 | 83 | 329 | 1.20E-136 | 495.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050991.t1 | O74507 | 23.9 | 255 | 162 | 10 | 2 | 233 | 80 | 325 | 3.1e-08 | 60.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050991.t1 | G7ZZ33 | 94.3 | 247 | 14 | 0 | 1 | 247 | 83 | 329 | 8.7e-137 | 495.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050991 | MS.gene08483 | 0.815949 | 7.11E-52 | -1.69E-46 |
| MS.gene050991 | MS.gene25014 | 0.916824 | 1.12E-85 | -1.69E-46 |
| MS.gene050991 | MS.gene54718 | -0.80571 | 1.17E-49 | -1.69E-46 |
| MS.gene050991 | MS.gene80210 | -0.80677 | 7.00E-50 | -1.69E-46 |
| MS.gene050991 | MS.gene81064 | 0.900266 | 8.70E-78 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050991.t1 | MTR_8g023760 | 94.332 | 247 | 14 | 0 | 1 | 247 | 83 | 329 | 3.76e-174 | 482 |
| MS.gene050991.t1 | MTR_7g117475 | 69.412 | 255 | 61 | 4 | 1 | 247 | 69 | 314 | 8.37e-128 | 364 |
| MS.gene050991.t1 | MTR_8g107030 | 31.034 | 203 | 103 | 9 | 55 | 237 | 87 | 272 | 3.38e-12 | 65.5 |
| MS.gene050991.t1 | MTR_8g107030 | 31.034 | 203 | 103 | 9 | 55 | 237 | 118 | 303 | 4.73e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050991.t1 | AT2G46890 | 71.255 | 247 | 71 | 0 | 1 | 247 | 76 | 322 | 1.49e-135 | 384 |
| MS.gene050991.t1 | AT1G18180 | 32.394 | 213 | 119 | 8 | 28 | 232 | 61 | 256 | 2.44e-13 | 68.6 |
| MS.gene050991.t1 | AT1G18180 | 32.394 | 213 | 119 | 8 | 28 | 232 | 61 | 256 | 2.60e-13 | 68.6 |
| MS.gene050991.t1 | AT1G73650 | 33.491 | 212 | 118 | 9 | 28 | 232 | 61 | 256 | 2.89e-11 | 62.4 |
| MS.gene050991.t1 | AT1G73650 | 33.491 | 212 | 118 | 9 | 28 | 232 | 61 | 256 | 3.39e-11 | 62.4 |
| MS.gene050991.t1 | AT1G73650 | 33.491 | 212 | 118 | 9 | 28 | 232 | 61 | 256 | 3.49e-11 | 62.4 |
Find 62 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACATGGATGGACCTTTAT+TGG | 0.173583 | 8.3:-68468488 | MS.gene050991:CDS |
| ATTACTTTAGACGTGAAAAT+TGG | 0.244208 | 8.3:-68470349 | MS.gene050991:CDS |
| CAACAAACCTTTGAGTATCT+TGG | 0.284159 | 8.3:-68468729 | MS.gene050991:CDS |
| GACGCTGTGGTGGTGGGGAC+TGG | 0.351750 | 8.3:-68468531 | MS.gene050991:CDS |
| ACAGGGATCACTGTCCAATA+TGG | 0.356410 | 8.3:+68470479 | None:intergenic |
| GTGTCAAGTACAGGGATTAC+AGG | 0.360789 | 8.3:+68468596 | None:intergenic |
| ATGGACCTTTATTGGAGCTT+TGG | 0.373438 | 8.3:-68468480 | MS.gene050991:CDS |
| ATTAACCAAAGCTCCAATAA+AGG | 0.385986 | 8.3:+68468475 | None:intergenic |
| TGCTGTTTATGTCTCTCAGC+AGG | 0.392466 | 8.3:-68470246 | MS.gene050991:intron |
| TGCAGATGATTGATCCATAT+TGG | 0.392989 | 8.3:-68470493 | None:intergenic |
| CTTTGGCTCAATATGATTTG+TGG | 0.396285 | 8.3:-68470427 | MS.gene050991:CDS |
| ACAAAGTGCACAACATATAA+AGG | 0.399002 | 8.3:+68468752 | None:intergenic |
| GCTATTGTTGTCTGTTTAAG+TGG | 0.413288 | 8.3:-68468698 | MS.gene050991:CDS |
| ACTGAGATGGGTCAACAGTA+TGG | 0.413473 | 8.3:-68470296 | MS.gene050991:CDS |
| TTACTATGCAACACACCCTT+TGG | 0.420431 | 8.3:-68470444 | MS.gene050991:CDS |
| TTGGTGAGACGCTGTGGTGG+TGG | 0.429994 | 8.3:-68468538 | MS.gene050991:CDS |
| TAGACGTGAAAATTGGCAAT+GGG | 0.432505 | 8.3:-68470342 | MS.gene050991:CDS |
| TTTGAGTATCTTGGACTTGG+TGG | 0.450705 | 8.3:-68468720 | MS.gene050991:CDS |
| GGGGACTGGTTGTGTTTGCA+TGG | 0.461450 | 8.3:-68468517 | MS.gene050991:CDS |
| TGGTGAGACGCTGTGGTGGT+GGG | 0.471699 | 8.3:-68468537 | MS.gene050991:CDS |
| AGATTGGCGTTTCACTGAGA+TGG | 0.473542 | 8.3:-68470309 | MS.gene050991:CDS |
| AGCGTCTCACCAAAGTAATT+CGG | 0.476940 | 8.3:+68468548 | None:intergenic |
| AGCCGGCGTCCGAATTACTT+TGG | 0.477007 | 8.3:-68468557 | MS.gene050991:CDS |
| AGCTTATGTGACTAGGCTTG+TGG | 0.481619 | 8.3:-68468441 | MS.gene050991:CDS |
| CTGTACTTGACACTGGCCTA+TGG | 0.484981 | 8.3:-68468586 | MS.gene050991:CDS |
| TAGTAATGAACAAGCATCAC+AGG | 0.485910 | 8.3:+68470461 | None:intergenic |
| AACAACAAGTTCAAAGAGCT+TGG | 0.488952 | 8.3:-68468623 | MS.gene050991:CDS |
| CAACTTCAGCGTGGATACCT+TGG | 0.496899 | 8.3:-68468361 | MS.gene050991:CDS |
| TGTGTTTAGCTTATGTGACT+AGG | 0.502231 | 8.3:-68468448 | MS.gene050991:CDS |
| CATAGGCCAGTGTCAAGTAC+AGG | 0.512081 | 8.3:+68468587 | None:intergenic |
| ACCTTTGAGTATCTTGGACT+TGG | 0.512692 | 8.3:-68468723 | MS.gene050991:CDS |
| CACAAATCATATTGAGCCAA+AGG | 0.525947 | 8.3:+68470428 | None:intergenic |
| GATTGGCGTTTCACTGAGAT+GGG | 0.529607 | 8.3:-68470308 | MS.gene050991:CDS |
| CATGGAACCTTGGACATGGA+TGG | 0.532497 | 8.3:-68468499 | MS.gene050991:CDS |
| GTTGTGTTTGCATGGAACCT+TGG | 0.534053 | 8.3:-68468509 | MS.gene050991:CDS |
| AATGGGGTGCTAGAGAAGAT+TGG | 0.536653 | 8.3:-68470325 | MS.gene050991:CDS |
| GGTGAGACGCTGTGGTGGTG+GGG | 0.545609 | 8.3:-68468536 | MS.gene050991:CDS |
| AGTATGGAAAACATTGGTGG+TGG | 0.552479 | 8.3:-68470280 | MS.gene050991:CDS |
| ACAAATCATATTGAGCCAAA+GGG | 0.557331 | 8.3:+68470429 | None:intergenic |
| AGTGCACAACATATAAAGGA+AGG | 0.575974 | 8.3:+68468756 | None:intergenic |
| GAAGGAAATGACTTAAACCA+AGG | 0.582801 | 8.3:+68468344 | None:intergenic |
| CTGGCCTATGGTATTACAGC+CGG | 0.588511 | 8.3:-68468574 | MS.gene050991:CDS |
| TGGCTCAATATGATTTGTGG+AGG | 0.590226 | 8.3:-68470424 | MS.gene050991:CDS |
| GTAATCCCTGTACTTGACAC+TGG | 0.592824 | 8.3:-68468593 | MS.gene050991:CDS |
| AACAGTATGGAAAACATTGG+TGG | 0.610863 | 8.3:-68470283 | MS.gene050991:CDS |
| GTATGGAAAACATTGGTGGT+GGG | 0.614678 | 8.3:-68470279 | MS.gene050991:CDS |
| ACCAAGTCCAAGATACTCAA+AGG | 0.615173 | 8.3:+68468722 | None:intergenic |
| TTTGCATGGAACCTTGGACA+TGG | 0.616196 | 8.3:-68468503 | MS.gene050991:CDS |
| TTAGACGTGAAAATTGGCAA+TGG | 0.620026 | 8.3:-68470343 | MS.gene050991:CDS |
| TAAAGGTCCATCCATGTCCA+AGG | 0.620673 | 8.3:+68468492 | None:intergenic |
| ATAGGCCAGTGTCAAGTACA+GGG | 0.634937 | 8.3:+68468588 | None:intergenic |
| CACCAAAGTAATTCGGACGC+CGG | 0.635129 | 8.3:+68468555 | None:intergenic |
| GTGCACAACATATAAAGGAA+GGG | 0.637619 | 8.3:+68468757 | None:intergenic |
| ATTACTTTGGTGAGACGCTG+TGG | 0.656576 | 8.3:-68468544 | MS.gene050991:CDS |
| TTATGTGACTAGGCTTGTGG+AGG | 0.657735 | 8.3:-68468438 | MS.gene050991:CDS |
| GTCAACAGTATGGAAAACAT+TGG | 0.662582 | 8.3:-68470286 | MS.gene050991:CDS |
| AGTAATGAACAAGCATCACA+GGG | 0.679888 | 8.3:+68470462 | None:intergenic |
| AGACGTGAAAATTGGCAATG+GGG | 0.680331 | 8.3:-68470341 | MS.gene050991:CDS |
| GACGCCGGCTGTAATACCAT+AGG | 0.684582 | 8.3:+68468570 | None:intergenic |
| ACTTTGGTGAGACGCTGTGG+TGG | 0.689623 | 8.3:-68468541 | MS.gene050991:CDS |
| ATCAGAAGACAACTTCAGCG+TGG | 0.695728 | 8.3:-68468370 | MS.gene050991:CDS |
| AGTCACATAAGCTAAACACA+AGG | 0.719129 | 8.3:+68468451 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGATATATTCAAAATT+TGG | - | chr8.3:68469108-68469127 | MS.gene050991:intron | 10.0% |
| !! | AAAATAAGTGAATAATGTTT+GGG | - | chr8.3:68468791-68468810 | MS.gene050991:intron | 15.0% |
| !! | AAAATTAATATCATTGTGTT+TGG | - | chr8.3:68469716-68469735 | MS.gene050991:intron | 15.0% |
| !! | ATATAAAATATAAGGAATAG+TGG | - | chr8.3:68469077-68469096 | MS.gene050991:intron | 15.0% |
| !! | TATAAAATATAAGGAATAGT+GGG | - | chr8.3:68469078-68469097 | MS.gene050991:intron | 15.0% |
| !! | TTCCTTTGATATAAAATATA+AGG | - | chr8.3:68469069-68469088 | MS.gene050991:intron | 15.0% |
| !! | TTGAATTATATATAATTTGG+AGG | - | chr8.3:68468882-68468901 | MS.gene050991:intron | 15.0% |
| !!! | ACTTTTTTCTAACAATTAAA+TGG | - | chr8.3:68469623-68469642 | MS.gene050991:intron | 15.0% |
| !!! | TTCCTTATATTTTATATCAA+AGG | + | chr8.3:68469074-68469093 | None:intergenic | 15.0% |
| !!! | TTGCTTATATTTTTTAACTA+AGG | - | chr8.3:68469162-68469181 | MS.gene050991:intron | 15.0% |
| !! | AAATATAGAAGATTAAGAGA+TGG | + | chr8.3:68469809-68469828 | None:intergenic | 20.0% |
| !! | GAAAATAAGTGAATAATGTT+TGG | - | chr8.3:68468790-68468809 | MS.gene050991:intron | 20.0% |
| !! | GTCTATTTATATTATTAGTC+AGG | + | chr8.3:68469475-68469494 | None:intergenic | 20.0% |
| !! | TCAAAGAAAATTGATGTATT+TGG | + | chr8.3:68469135-68469154 | None:intergenic | 20.0% |
| !!! | ATTAACATTTTGCAATTTCA+AGG | + | chr8.3:68468699-68468718 | None:intergenic | 20.0% |
| !!! | TATAGATTTTTTTTGACAGA+AGG | + | chr8.3:68469832-68469851 | None:intergenic | 20.0% |
| !!! | TATTTTTTTATAGATACGAC+TGG | + | chr8.3:68469231-68469250 | None:intergenic | 20.0% |
| !!! | TTCTTAATTTTAACATCTGA+AGG | + | chr8.3:68470484-68470503 | None:intergenic | 20.0% |
| !!! | TTTGGAGTAAATAATCAATT+TGG | - | chr8.3:68468647-68468666 | MS.gene050991:CDS | 20.0% |
| ! | ATCTATATTTCCTTTGTGTT+AGG | - | chr8.3:68469845-68469864 | MS.gene050991:intron | 25.0% |
| ! | ATTACTTTAGACGTGAAAAT+TGG | - | chr8.3:68468458-68468477 | MS.gene050991:CDS | 25.0% |
| ! | CAAAAAAAAATTGTCATGAG+CGG | + | chr8.3:68469040-68469059 | None:intergenic | 25.0% |
| ! | TGATATCAGATTATGAAAGA+GGG | - | chr8.3:68468821-68468840 | MS.gene050991:intron | 25.0% |
| ! | TTGATATCAGATTATGAAAG+AGG | - | chr8.3:68468820-68468839 | MS.gene050991:intron | 25.0% |
| !!! | ATTTATATTTTTCGGTGTTG+AGG | - | chr8.3:68468983-68469002 | MS.gene050991:intron | 25.0% |
| !!! | TGTCTGTTTGGTTTAATTTT+TGG | - | chr8.3:68468629-68468648 | MS.gene050991:CDS | 25.0% |
| !!! | TTTATATTTTTCGGTGTTGA+GGG | - | chr8.3:68468984-68469003 | MS.gene050991:intron | 25.0% |
| AAATAACAGACCTAACACAA+AGG | + | chr8.3:68469858-68469877 | None:intergenic | 30.0% | |
| AATTGCAATGGAAATCAACA+CGG | - | chr8.3:68469938-68469957 | MS.gene050991:intron | 30.0% | |
| ACAAAGTGCACAACATATAA+AGG | + | chr8.3:68470058-68470077 | None:intergenic | 30.0% | |
| ACAAATCATATTGAGCCAAA+GGG | + | chr8.3:68468381-68468400 | None:intergenic | 30.0% | |
| AGAGTGAATTTGAATTGCAA+TGG | - | chr8.3:68469926-68469945 | MS.gene050991:intron | 30.0% | |
| ATTAACCAAAGCTCCAATAA+AGG | + | chr8.3:68470335-68470354 | None:intergenic | 30.0% | |
| CAATTCATCAAACATGTTCA+AGG | + | chr8.3:68468611-68468630 | None:intergenic | 30.0% | |
| GATAATTGGCACATTCTTAA+AGG | + | chr8.3:68469014-68469033 | None:intergenic | 30.0% | |
| TGGCGATAAAAACATTTCAT+AGG | - | chr8.3:68469304-68469323 | MS.gene050991:intron | 30.0% | |
| TGTTTGATGAATTGTCTGTT+TGG | - | chr8.3:68468617-68468636 | MS.gene050991:CDS | 30.0% | |
| ! | AGATTGTGATTTTGTTGAGT+TGG | - | chr8.3:68468410-68468429 | MS.gene050991:CDS | 30.0% |
| ! | GATTGTGATTTTGTTGAGTT+GGG | - | chr8.3:68468411-68468430 | MS.gene050991:CDS | 30.0% |
| ! | TGTGAAGAATTGATTTCTGT+AGG | - | chr8.3:68469655-68469674 | MS.gene050991:intron | 30.0% |
| ! | TTTTCAATGCACAAATGACA+AGG | + | chr8.3:68469986-68470005 | None:intergenic | 30.0% |
| !! | TGACATTAAGTTGGTAATGT+TGG | - | chr8.3:68468757-68468776 | MS.gene050991:CDS | 30.0% |
| !! | TTGTTGCAGATGTTTTTGAT+TGG | - | chr8.3:68470022-68470041 | MS.gene050991:intron | 30.0% |
| !!! | TTAGGTCTGTTATTTTTCAG+CGG | - | chr8.3:68469863-68469882 | MS.gene050991:intron | 30.0% |
| !!! | TTATATTTTTCGGTGTTGAG+GGG | - | chr8.3:68468985-68469004 | MS.gene050991:intron | 30.0% |
| AACAACAAGTTCAAAGAGCT+TGG | - | chr8.3:68470184-68470203 | MS.gene050991:intron | 35.0% | |
| AACAGTATGGAAAACATTGG+TGG | - | chr8.3:68468524-68468543 | MS.gene050991:CDS | 35.0% | |
| AATCAAATCCGTTCCTTTGT+TGG | - | chr8.3:68468716-68468735 | MS.gene050991:CDS | 35.0% | |
| AATCAATTTGGTCCCTGATA+TGG | - | chr8.3:68468659-68468678 | MS.gene050991:CDS | 35.0% | |
| ACGTGTGTGAAATTTGAACT+TGG | + | chr8.3:68469500-68469519 | None:intergenic | 35.0% | |
| AGTAATGAACAAGCATCACA+GGG | + | chr8.3:68468348-68468367 | None:intergenic | 35.0% | |
| AGTCACATAAGCTAAACACA+AGG | + | chr8.3:68470359-68470378 | None:intergenic | 35.0% | |
| AGTGCACAACATATAAAGGA+AGG | + | chr8.3:68470054-68470073 | None:intergenic | 35.0% | |
| CAAAAACAACGCTAACACAT+AGG | + | chr8.3:68469549-68469568 | None:intergenic | 35.0% | |
| CAACAAACCTTTGAGTATCT+TGG | - | chr8.3:68470078-68470097 | MS.gene050991:intron | 35.0% | |
| CACAAATCATATTGAGCCAA+AGG | + | chr8.3:68468382-68468401 | None:intergenic | 35.0% | |
| CATAATGTAACCACATGTGT+TGG | + | chr8.3:68468954-68468973 | None:intergenic | 35.0% | |
| CTTGTCTCACTGAAATTTGA+TGG | - | chr8.3:68469284-68469303 | MS.gene050991:intron | 35.0% | |
| GAAGGAAATGACTTAAACCA+AGG | + | chr8.3:68470466-68470485 | None:intergenic | 35.0% | |
| GCTATTGTTGTCTGTTTAAG+TGG | - | chr8.3:68470109-68470128 | MS.gene050991:intron | 35.0% | |
| GGACTAAAGTGACATTAAGT+TGG | - | chr8.3:68468748-68468767 | MS.gene050991:CDS | 35.0% | |
| GTCAACAGTATGGAAAACAT+TGG | - | chr8.3:68468521-68468540 | MS.gene050991:CDS | 35.0% | |
| GTGCACAACATATAAAGGAA+GGG | + | chr8.3:68470053-68470072 | None:intergenic | 35.0% | |
| GTTATTGTGAGTTGTTAGTC+AGG | - | chr8.3:68469903-68469922 | MS.gene050991:intron | 35.0% | |
| TAGACGTGAAAATTGGCAAT+GGG | - | chr8.3:68468465-68468484 | MS.gene050991:CDS | 35.0% | |
| TAGTAATGAACAAGCATCAC+AGG | + | chr8.3:68468349-68468368 | None:intergenic | 35.0% | |
| TATCACTACCAACAAAGGAA+CGG | + | chr8.3:68468727-68468746 | None:intergenic | 35.0% | |
| TGCAATTTCAAGGATCACTT+TGG | + | chr8.3:68468689-68468708 | None:intergenic | 35.0% | |
| TTAGACGTGAAAATTGGCAA+TGG | - | chr8.3:68468464-68468483 | MS.gene050991:CDS | 35.0% | |
| ! | CTTTGGCTCAATATGATTTG+TGG | - | chr8.3:68468380-68468399 | MS.gene050991:CDS | 35.0% |
| ! | TGTGTTTAGCTTATGTGACT+AGG | - | chr8.3:68470359-68470378 | MS.gene050991:CDS | 35.0% |
| !! | CACTTTGGAATACCATATCA+GGG | + | chr8.3:68468674-68468693 | None:intergenic | 35.0% |
| !! | CTATGTGTTAGCGTTGTTTT+TGG | - | chr8.3:68469547-68469566 | MS.gene050991:intron | 35.0% |
| !! | GGAATTTCTAGTTTCAGCTA+TGG | - | chr8.3:68469737-68469756 | MS.gene050991:intron | 35.0% |
| !! | TCACTTTGGAATACCATATC+AGG | + | chr8.3:68468675-68468694 | None:intergenic | 35.0% |
| !! | TTCCTTTGTTGGTAGTGATA+TGG | - | chr8.3:68468727-68468746 | MS.gene050991:CDS | 35.0% |
| !!! | TGATTTTGTTGAGTTGGGTT+TGG | - | chr8.3:68468416-68468435 | MS.gene050991:CDS | 35.0% |
| ACATGTCAAATCCCACTAAG+TGG | + | chr8.3:68468917-68468936 | None:intergenic | 40.0% | |
| ACCAAGTCCAAGATACTCAA+AGG | + | chr8.3:68470088-68470107 | None:intergenic | 40.0% | |
| ACCTTTGAGTATCTTGGACT+TGG | - | chr8.3:68470084-68470103 | MS.gene050991:intron | 40.0% | |
| AGACGTGAAAATTGGCAATG+GGG | - | chr8.3:68468466-68468485 | MS.gene050991:CDS | 40.0% | |
| AGCGTCTCACCAAAGTAATT+CGG | + | chr8.3:68470262-68470281 | None:intergenic | 40.0% | |
| AGTATGGAAAACATTGGTGG+TGG | - | chr8.3:68468527-68468546 | MS.gene050991:CDS | 40.0% | |
| ATGGACCTTTATTGGAGCTT+TGG | - | chr8.3:68470327-68470346 | MS.gene050991:CDS | 40.0% | |
| CATGTCAAATCCCACTAAGT+GGG | + | chr8.3:68468916-68468935 | None:intergenic | 40.0% | |
| GTCCATATCACTACCAACAA+AGG | + | chr8.3:68468732-68468751 | None:intergenic | 40.0% | |
| TAGTGGGATTTGACATGTTC+CGG | - | chr8.3:68468919-68468938 | MS.gene050991:intron | 40.0% | |
| TTACTATGCAACACACCCTT+TGG | - | chr8.3:68468363-68468382 | MS.gene050991:CDS | 40.0% | |
| TTCACACACGTCACTCAAAA+TGG | - | chr8.3:68469509-68469528 | MS.gene050991:intron | 40.0% | |
| TTTGAGTATCTTGGACTTGG+TGG | - | chr8.3:68470087-68470106 | MS.gene050991:intron | 40.0% | |
| ! | GTATGGAAAACATTGGTGGT+GGG | - | chr8.3:68468528-68468547 | MS.gene050991:CDS | 40.0% |
| ! | TGGCTCAATATGATTTGTGG+AGG | - | chr8.3:68468383-68468402 | MS.gene050991:CDS | 40.0% |
| ACAGGGATCACTGTCCAATA+TGG | + | chr8.3:68468331-68468350 | None:intergenic | 45.0% | |
| ACTGAGATGGGTCAACAGTA+TGG | - | chr8.3:68468511-68468530 | MS.gene050991:CDS | 45.0% | |
| AGATTGGCGTTTCACTGAGA+TGG | - | chr8.3:68468498-68468517 | MS.gene050991:CDS | 45.0% | |
| AGCTTATGTGACTAGGCTTG+TGG | - | chr8.3:68470366-68470385 | MS.gene050991:CDS | 45.0% | |
| AGGACTAAGTTCCCACTTAG+TGG | - | chr8.3:68468902-68468921 | MS.gene050991:intron | 45.0% | |
| ATAGGCCAGTGTCAAGTACA+GGG | + | chr8.3:68470222-68470241 | None:intergenic | 45.0% | |
| ATCAGAAGACAACTTCAGCG+TGG | - | chr8.3:68470437-68470456 | MS.gene050991:CDS | 45.0% | |
| ATTACTTTGGTGAGACGCTG+TGG | - | chr8.3:68470263-68470282 | MS.gene050991:CDS | 45.0% | |
| CACACGTCACTCAAAATGGA+CGG | - | chr8.3:68469513-68469532 | MS.gene050991:intron | 45.0% | |
| GATTGGCGTTTCACTGAGAT+GGG | - | chr8.3:68468499-68468518 | MS.gene050991:CDS | 45.0% | |
| GGACATGGATGGACCTTTAT+TGG | - | chr8.3:68470319-68470338 | MS.gene050991:CDS | 45.0% | |
| GGACTAAGTTCCCACTTAGT+GGG | - | chr8.3:68468903-68468922 | MS.gene050991:intron | 45.0% | |
| GTAATCCCTGTACTTGACAC+TGG | - | chr8.3:68470214-68470233 | MS.gene050991:intron | 45.0% | |
| GTCATGAGCGGACAGATAAT+TGG | + | chr8.3:68469028-68469047 | None:intergenic | 45.0% | |
| GTGTCAAGTACAGGGATTAC+AGG | + | chr8.3:68470214-68470233 | None:intergenic | 45.0% | |
| GTTGTGTTTGCATGGAACCT+TGG | - | chr8.3:68470298-68470317 | MS.gene050991:CDS | 45.0% | |
| GTTTATGTCTCTCAGCAGGT+TGG | - | chr8.3:68468565-68468584 | MS.gene050991:CDS | 45.0% | |
| TAAAGGTCCATCCATGTCCA+AGG | + | chr8.3:68470318-68470337 | None:intergenic | 45.0% | |
| TTATGTGACTAGGCTTGTGG+AGG | - | chr8.3:68470369-68470388 | MS.gene050991:CDS | 45.0% | |
| TTTGCATGGAACCTTGGACA+TGG | - | chr8.3:68470304-68470323 | MS.gene050991:CDS | 45.0% | |
| ! | AATGGGGTGCTAGAGAAGAT+TGG | - | chr8.3:68468482-68468501 | MS.gene050991:CDS | 45.0% |
| ! | GTAACCACATGTGTTGGTGT+TGG | + | chr8.3:68468948-68468967 | None:intergenic | 45.0% |
| ! | TGCTGTTTATGTCTCTCAGC+AGG | - | chr8.3:68468561-68468580 | MS.gene050991:CDS | 45.0% |
| !!! | CTCTCAGCAGGTTGGTTTTT+TGG | - | chr8.3:68468573-68468592 | MS.gene050991:CDS | 45.0% |
| !!! | ATTTTGAATTATATATAATT+TGG | - | chr8.3:68468879-68468898 | MS.gene050991:intron | 5.0% |
| !!! | TTTTAGTTATTTATATTTTT+CGG | - | chr8.3:68468975-68468994 | MS.gene050991:intron | 5.0% |
| CAACTTCAGCGTGGATACCT+TGG | - | chr8.3:68470446-68470465 | MS.gene050991:CDS | 50.0% | |
| CACCAAAGTAATTCGGACGC+CGG | + | chr8.3:68470255-68470274 | None:intergenic | 50.0% | |
| CATAGGCCAGTGTCAAGTAC+AGG | + | chr8.3:68470223-68470242 | None:intergenic | 50.0% | |
| CATGGAACCTTGGACATGGA+TGG | - | chr8.3:68470308-68470327 | MS.gene050991:CDS | 50.0% | |
| CTGGCCTATGGTATTACAGC+CGG | - | chr8.3:68470233-68470252 | MS.gene050991:intron | 50.0% | |
| GTGTCCAACACCAACACATG+TGG | - | chr8.3:68468941-68468960 | MS.gene050991:intron | 50.0% | |
| ! | CTGTACTTGACACTGGCCTA+TGG | - | chr8.3:68470221-68470240 | MS.gene050991:intron | 50.0% |
| !! | CATGTGTTGGTGTTGGACAC+CGG | + | chr8.3:68468941-68468960 | None:intergenic | 50.0% |
| ACTTTGGTGAGACGCTGTGG+TGG | - | chr8.3:68470266-68470285 | MS.gene050991:CDS | 55.0% | |
| AGCCGGCGTCCGAATTACTT+TGG | - | chr8.3:68470250-68470269 | MS.gene050991:CDS | 55.0% | |
| ! | GACGCCGGCTGTAATACCAT+AGG | + | chr8.3:68470240-68470259 | None:intergenic | 55.0% |
| !! | GGGGACTGGTTGTGTTTGCA+TGG | - | chr8.3:68470290-68470309 | MS.gene050991:CDS | 55.0% |
| TGGTGAGACGCTGTGGTGGT+GGG | - | chr8.3:68470270-68470289 | MS.gene050991:CDS | 60.0% | |
| TTGGTGAGACGCTGTGGTGG+TGG | - | chr8.3:68470269-68470288 | MS.gene050991:CDS | 60.0% | |
| ! | GGTGAGACGCTGTGGTGGTG+GGG | - | chr8.3:68470271-68470290 | MS.gene050991:CDS | 65.0% |
| !! | GACGCTGTGGTGGTGGGGAC+TGG | - | chr8.3:68470276-68470295 | MS.gene050991:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 68468319 | 68470510 | 68468319 | ID=MS.gene050991 |
| chr8.3 | mRNA | 68468319 | 68470510 | 68468319 | ID=MS.gene050991.t1;Parent=MS.gene050991 |
| chr8.3 | exon | 68470247 | 68470510 | 68470247 | ID=MS.gene050991.t1.exon1;Parent=MS.gene050991.t1 |
| chr8.3 | CDS | 68470247 | 68470510 | 68470247 | ID=cds.MS.gene050991.t1;Parent=MS.gene050991.t1 |
| chr8.3 | exon | 68468319 | 68468798 | 68468319 | ID=MS.gene050991.t1.exon2;Parent=MS.gene050991.t1 |
| chr8.3 | CDS | 68468319 | 68468798 | 68468319 | ID=cds.MS.gene050991.t1;Parent=MS.gene050991.t1 |
| Gene Sequence |
| Protein sequence |
