Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81257.t1 | XP_003617922.1 | 99.5 | 417 | 2 | 0 | 1 | 417 | 36 | 452 | 1.50E-235 | 825.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81257.t1 | Q9ZW34 | 80.8 | 417 | 80 | 0 | 1 | 417 | 36 | 452 | 3.0e-197 | 689.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81257.t1 | G7K4W1 | 99.5 | 417 | 2 | 0 | 1 | 417 | 36 | 452 | 1.1e-235 | 825.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049190 | MS.gene81257 | 0.830611 | 2.66E-55 | -1.69E-46 |
MS.gene049824 | MS.gene81257 | 0.817715 | 2.86E-52 | -1.69E-46 |
MS.gene05016 | MS.gene81257 | 0.808616 | 2.84E-50 | -1.69E-46 |
MS.gene051744 | MS.gene81257 | 0.805251 | 1.46E-49 | -1.69E-46 |
MS.gene053079 | MS.gene81257 | 0.800118 | 1.67E-48 | -1.69E-46 |
MS.gene053144 | MS.gene81257 | 0.806369 | 8.51E-50 | -1.69E-46 |
MS.gene054584 | MS.gene81257 | 0.817614 | 3.01E-52 | -1.69E-46 |
MS.gene055512 | MS.gene81257 | 0.806898 | 6.58E-50 | -1.69E-46 |
MS.gene056507 | MS.gene81257 | 0.817758 | 2.79E-52 | -1.69E-46 |
MS.gene060194 | MS.gene81257 | 0.812503 | 4.10E-51 | -1.69E-46 |
MS.gene060587 | MS.gene81257 | 0.820121 | 8.11E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene81257 | MS.gene78187 | PPI |
MS.gene81257 | MS.gene020556 | PPI |
MS.gene81257 | MS.gene83234 | PPI |
MS.gene81257 | MS.gene007304 | PPI |
MS.gene81257 | MS.gene045798 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81257.t1 | MTR_5g096970 | 99.520 | 417 | 2 | 0 | 1 | 417 | 36 | 452 | 0.0 | 854 |
MS.gene81257.t1 | MTR_7g103620 | 58.612 | 418 | 162 | 7 | 10 | 417 | 2 | 418 | 1.78e-169 | 482 |
MS.gene81257.t1 | MTR_2g056190 | 58.049 | 410 | 170 | 2 | 9 | 417 | 62 | 470 | 1.91e-169 | 484 |
MS.gene81257.t1 | MTR_6g060570 | 56.115 | 417 | 154 | 8 | 12 | 417 | 5 | 403 | 2.98e-155 | 446 |
MS.gene81257.t1 | MTR_7g103620 | 57.790 | 353 | 140 | 5 | 74 | 417 | 16 | 368 | 8.23e-141 | 407 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81257.t1 | AT2G29560 | 80.815 | 417 | 80 | 0 | 1 | 417 | 36 | 452 | 0.0 | 711 |
MS.gene81257.t1 | AT1G74030 | 57.957 | 421 | 168 | 4 | 5 | 417 | 37 | 456 | 8.02e-170 | 484 |
MS.gene81257.t1 | AT2G36530 | 58.612 | 418 | 162 | 7 | 10 | 417 | 2 | 418 | 4.61e-168 | 479 |
MS.gene81257.t1 | AT2G36530 | 57.683 | 397 | 157 | 7 | 31 | 417 | 12 | 407 | 5.80e-156 | 447 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
37940 | gene | 686 | 9339 | 686 | ID=MS.gene81257 |
37940 | mRNA | 686 | 9339 | 686 | ID=MS.gene81257.t1;Parent=MS.gene81257 |
37940 | exon | 9185 | 9339 | 9185 | ID=MS.gene81257.t1.exon1;Parent=MS.gene81257.t1 |
37940 | CDS | 9185 | 9339 | 9185 | ID=cds.MS.gene81257.t1;Parent=MS.gene81257.t1 |
37940 | exon | 7377 | 7551 | 7377 | ID=MS.gene81257.t1.exon2;Parent=MS.gene81257.t1 |
37940 | CDS | 7377 | 7551 | 7377 | ID=cds.MS.gene81257.t1;Parent=MS.gene81257.t1 |
37940 | exon | 6427 | 6498 | 6427 | ID=MS.gene81257.t1.exon3;Parent=MS.gene81257.t1 |
37940 | CDS | 6427 | 6498 | 6427 | ID=cds.MS.gene81257.t1;Parent=MS.gene81257.t1 |
37940 | exon | 6204 | 6320 | 6204 | ID=MS.gene81257.t1.exon4;Parent=MS.gene81257.t1 |
37940 | CDS | 6204 | 6320 | 6204 | ID=cds.MS.gene81257.t1;Parent=MS.gene81257.t1 |
37940 | exon | 5011 | 5091 | 5011 | ID=MS.gene81257.t1.exon5;Parent=MS.gene81257.t1 |
37940 | CDS | 5011 | 5091 | 5011 | ID=cds.MS.gene81257.t1;Parent=MS.gene81257.t1 |
37940 | exon | 4713 | 4789 | 4713 | ID=MS.gene81257.t1.exon6;Parent=MS.gene81257.t1 |
37940 | CDS | 4713 | 4789 | 4713 | ID=cds.MS.gene81257.t1;Parent=MS.gene81257.t1 |
37940 | exon | 3608 | 3711 | 3608 | ID=MS.gene81257.t1.exon7;Parent=MS.gene81257.t1 |
37940 | CDS | 3608 | 3711 | 3608 | ID=cds.MS.gene81257.t1;Parent=MS.gene81257.t1 |
37940 | exon | 2230 | 2328 | 2230 | ID=MS.gene81257.t1.exon8;Parent=MS.gene81257.t1 |
37940 | CDS | 2230 | 2328 | 2230 | ID=cds.MS.gene81257.t1;Parent=MS.gene81257.t1 |
37940 | exon | 2045 | 2130 | 2045 | ID=MS.gene81257.t1.exon9;Parent=MS.gene81257.t1 |
37940 | CDS | 2045 | 2130 | 2045 | ID=cds.MS.gene81257.t1;Parent=MS.gene81257.t1 |
37940 | exon | 1354 | 1440 | 1354 | ID=MS.gene81257.t1.exon10;Parent=MS.gene81257.t1 |
37940 | CDS | 1354 | 1440 | 1354 | ID=cds.MS.gene81257.t1;Parent=MS.gene81257.t1 |
37940 | exon | 686 | 883 | 686 | ID=MS.gene81257.t1.exon11;Parent=MS.gene81257.t1 |
37940 | CDS | 686 | 883 | 686 | ID=cds.MS.gene81257.t1;Parent=MS.gene81257.t1 |
Gene Sequence |
Protein sequence |