Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81430.t1 | XP_003630286.1 | 92.4 | 395 | 20 | 4 | 1 | 390 | 1 | 390 | 3.90E-198 | 700.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81430.t1 | P52424 | 77.0 | 395 | 77 | 4 | 1 | 389 | 1 | 387 | 1.2e-168 | 594.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81430.t1 | B7FJ14 | 92.4 | 395 | 20 | 4 | 1 | 390 | 1 | 390 | 2.8e-198 | 700.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057165 | MS.gene81430 | 0.808695 | 2.73E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81430.t1 | MTR_8g093860 | 92.405 | 395 | 20 | 4 | 1 | 390 | 1 | 390 | 0.0 | 691 |
| MS.gene81430.t1 | MTR_8g093860 | 83.797 | 395 | 20 | 5 | 1 | 390 | 1 | 356 | 0.0 | 603 |
| MS.gene81430.t1 | MTR_5g093890 | 89.474 | 114 | 12 | 0 | 277 | 390 | 109 | 222 | 2.33e-68 | 215 |
| MS.gene81430.t1 | MTR_5g093890 | 61.350 | 163 | 16 | 4 | 43 | 200 | 1 | 121 | 1.54e-48 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81430.t1 | AT3G55010 | 70.866 | 381 | 96 | 4 | 10 | 389 | 22 | 388 | 0.0 | 515 |
| MS.gene81430.t1 | AT3G55010 | 70.866 | 381 | 96 | 4 | 10 | 389 | 22 | 388 | 0.0 | 515 |
Find 93 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGTTGCAGAAGCTTTAA+TGG | 0.186823 | 5.2:+79234092 | MS.gene81430:CDS |
| TCTCTTCTTCAGGTTATAAA+AGG | 0.219818 | 5.2:+79232995 | MS.gene81430:intron |
| TGAAACCGCCACCAGTAATA+TGG | 0.229484 | 5.2:-79234273 | None:intergenic |
| GTTGCTGTTAAAGCTGAATT+AGG | 0.262432 | 5.2:+79231796 | MS.gene81430:CDS |
| GTGATTGTAGCGGTGCCTTT+AGG | 0.290401 | 5.2:-79231682 | None:intergenic |
| CTGGCATTCATGACACTATT+GGG | 0.307297 | 5.2:+79232704 | MS.gene81430:CDS |
| GTCAATGACATTGTTACTTC+GGG | 0.311408 | 5.2:+79232830 | MS.gene81430:CDS |
| ATAGAAGCACCAAAACCTTC+TGG | 0.347224 | 5.2:-79234319 | None:intergenic |
| ACTGGCATTCATGACACTAT+TGG | 0.351495 | 5.2:+79232703 | MS.gene81430:CDS |
| TGTTTAACATAGATCTTAGT+TGG | 0.359529 | 5.2:-79234117 | None:intergenic |
| GTGATGCTTGCCTTTGAAAC+TGG | 0.364727 | 5.2:+79232685 | MS.gene81430:CDS |
| AAGGGAATTGCCCATATTAC+TGG | 0.366271 | 5.2:+79234262 | MS.gene81430:CDS |
| ACCAATCCCGGGAGCCATCT+TGG | 0.375081 | 5.2:-79231887 | None:intergenic |
| GTTATAAAAGGAATTGTTGA+TGG | 0.376433 | 5.2:+79233007 | MS.gene81430:CDS |
| AACTAAGATCTATGTTAAAC+AGG | 0.388871 | 5.2:+79234119 | MS.gene81430:CDS |
| TCAAGTGGAGTTCACTCTAA+TGG | 0.393600 | 5.2:+79233921 | MS.gene81430:CDS |
| TTAGAGTGAACTCCACTTGA+TGG | 0.400231 | 5.2:-79233918 | None:intergenic |
| TTCAACAAAGCAATGAGTTT+CGG | 0.405513 | 5.2:+79231613 | None:intergenic |
| GCTCCCGGGATTGGTGGCTT+CGG | 0.417133 | 5.2:+79231895 | MS.gene81430:CDS |
| ACCGCGGGCGACATTCTTAT+CGG | 0.417757 | 5.2:+79233891 | MS.gene81430:CDS |
| GGTGATTCATATCTCGTTGC+TGG | 0.425062 | 5.2:+79232640 | MS.gene81430:intron |
| CAATCTGATTGTGCTCTTCT+CGG | 0.426140 | 5.2:+79233037 | MS.gene81430:CDS |
| ATCTTAGTGGTTGTGCGGTT+GGG | 0.428572 | 5.2:+79233829 | MS.gene81430:CDS |
| TGATGTGGATGTTGCTGAAC+AGG | 0.430758 | 5.2:+79232898 | MS.gene81430:CDS |
| TTCCTAGATTACTTTGCTAC+TGG | 0.434841 | 5.2:+79232869 | MS.gene81430:CDS |
| CCCGGGATTGGTGGCTTCGG+TGG | 0.435733 | 5.2:+79231898 | MS.gene81430:CDS |
| AGTATTCTATTAGCTGCCTC+TGG | 0.440480 | 5.2:-79234577 | None:intergenic |
| ACCACCGAAGCCACCAATCC+CGG | 0.448332 | 5.2:-79231899 | None:intergenic |
| GCCAAGATGGCTCCCGGGAT+TGG | 0.453678 | 5.2:+79231886 | MS.gene81430:CDS |
| GATCTTAGTGGTTGTGCGGT+TGG | 0.461826 | 5.2:+79233828 | MS.gene81430:CDS |
| GACCAGTAGCAAAGTAATCT+AGG | 0.464226 | 5.2:-79232871 | None:intergenic |
| GCAACTGTAGTGCTAGCGCC+AGG | 0.466715 | 5.2:-79234078 | None:intergenic |
| CGTCAATGACATTGTTACTT+CGG | 0.471639 | 5.2:+79232829 | MS.gene81430:CDS |
| GTCAGCAAAGGAGGGGTAAA+GGG | 0.471923 | 5.2:+79234244 | MS.gene81430:CDS |
| AAGAAAGATTCCGTTATCAA+TGG | 0.474326 | 5.2:+79233858 | MS.gene81430:CDS |
| CTGCCTCTGGAGTGGCTACA+AGG | 0.475001 | 5.2:-79234564 | None:intergenic |
| AGTCAGCAAAGGAGGGGTAA+AGG | 0.475808 | 5.2:+79234243 | MS.gene81430:CDS |
| TGACACTATTGGGATTGATC+TGG | 0.476022 | 5.2:+79232714 | MS.gene81430:CDS |
| TTTCAGACTGCAGAGATGCC+TGG | 0.478402 | 5.2:+79233783 | MS.gene81430:intron |
| AAGATGGCTCCCGGGATTGG+TGG | 0.498402 | 5.2:+79231889 | MS.gene81430:CDS |
| GAAACCGCCACCAGTAATAT+GGG | 0.506817 | 5.2:-79234272 | None:intergenic |
| GGTGAAGTTATTAGCGGAAA+GGG | 0.508573 | 5.2:+79234637 | MS.gene81430:CDS |
| AGAATTGCCAAGATGGCTCC+CGG | 0.510784 | 5.2:+79231880 | MS.gene81430:CDS |
| CCACCGAAGCCACCAATCCC+GGG | 0.518062 | 5.2:-79231898 | None:intergenic |
| TTGCTGGTACTGATGGTGTT+GGG | 0.519574 | 5.2:+79232656 | MS.gene81430:CDS |
| GAAGGTGAGTATGATCTTAG+TGG | 0.521805 | 5.2:+79233816 | MS.gene81430:CDS |
| AGGTCAAGGTCTTACTTACA+AGG | 0.523785 | 5.2:+79231816 | MS.gene81430:CDS |
| TGTTCGAAGAATTGCCAAGA+TGG | 0.524535 | 5.2:+79231873 | MS.gene81430:CDS |
| GTCATGAATGCCAGTTTCAA+AGG | 0.530046 | 5.2:-79232695 | None:intergenic |
| TGCTACTGGTCACCTTGATG+TGG | 0.532410 | 5.2:+79232883 | MS.gene81430:CDS |
| TGAAGCCATTTGAAAACTGC+AGG | 0.535533 | 5.2:-79234364 | None:intergenic |
| TATCTCGTTGCTGGTACTGA+TGG | 0.539782 | 5.2:+79232649 | MS.gene81430:CDS |
| TCATTGAAAGATAAACTCCC+TGG | 0.543700 | 5.2:+79234060 | MS.gene81430:CDS |
| GTTGCTGGTACTGATGGTGT+TGG | 0.546250 | 5.2:+79232655 | MS.gene81430:CDS |
| GTTGCATCAGTTAAACCTAA+AGG | 0.547245 | 5.2:+79231667 | MS.gene81430:CDS |
| ATTGCCCATATTACTGGTGG+CGG | 0.548526 | 5.2:+79234268 | MS.gene81430:CDS |
| CGCATAGGTGAAGTTATTAG+CGG | 0.554142 | 5.2:+79234631 | MS.gene81430:CDS |
| GTTAAAGCTGAATTAGGTCA+AGG | 0.574891 | 5.2:+79231802 | MS.gene81430:CDS |
| CGATTGCAATGCGCAAAATG+TGG | 0.583088 | 5.2:-79231705 | None:intergenic |
| TTCTATATACAAAGACTCGT+GGG | 0.583148 | 5.2:+79234336 | MS.gene81430:CDS |
| AGGTGAAGTTATTAGCGGAA+AGG | 0.587730 | 5.2:+79234636 | MS.gene81430:CDS |
| ATGCCTGGTCTATACAAAGA+AGG | 0.589062 | 5.2:+79233798 | MS.gene81430:CDS |
| GAATTGCCAAGATGGCTCCC+GGG | 0.589431 | 5.2:+79231881 | MS.gene81430:CDS |
| CGCTAATAACTTCACCTATG+CGG | 0.589870 | 5.2:-79234630 | None:intergenic |
| TCTATTAGCTGCCTCTGGAG+TGG | 0.591995 | 5.2:-79234572 | None:intergenic |
| GTTCAGCAACATCCACATCA+AGG | 0.596378 | 5.2:-79232895 | None:intergenic |
| CTTATCGGTTTACCATCAAG+TGG | 0.597195 | 5.2:+79233906 | MS.gene81430:CDS |
| CTTCTATATACAAAGACTCG+TGG | 0.598028 | 5.2:+79234335 | MS.gene81430:CDS |
| CAATGACATTGTTACTTCGG+GGG | 0.601621 | 5.2:+79232832 | MS.gene81430:CDS |
| ACAGAGAAAGCCTACCGCAT+AGG | 0.605304 | 5.2:+79234616 | MS.gene81430:CDS |
| TCACCTTCTTTGTATAGACC+AGG | 0.605966 | 5.2:-79233801 | None:intergenic |
| ACCAGCGTCAATGTCAACTC+CGG | 0.611044 | 5.2:-79231842 | None:intergenic |
| TCCGGAGTTGACATTGACGC+TGG | 0.615130 | 5.2:+79231841 | MS.gene81430:CDS |
| AATAACTTCACCTATGCGGT+AGG | 0.617101 | 5.2:-79234626 | None:intergenic |
| CAACTGTAGTGCTAGCGCCA+GGG | 0.619110 | 5.2:-79234077 | None:intergenic |
| TTGACATAGTCAGCAAAGGA+GGG | 0.619945 | 5.2:+79234236 | MS.gene81430:CDS |
| CTTGACATAGTCAGCAAAGG+AGG | 0.620172 | 5.2:+79234235 | MS.gene81430:CDS |
| TTGTGCTCTTCTCGGAGGAG+AGG | 0.621414 | 5.2:+79233045 | MS.gene81430:CDS |
| GATTGCAATGCGCAAAATGT+GGG | 0.626408 | 5.2:-79231704 | None:intergenic |
| TCAATGACATTGTTACTTCG+GGG | 0.633382 | 5.2:+79232831 | MS.gene81430:CDS |
| GGTAGAGTACTTGAGAAAAG+CGG | 0.636828 | 5.2:+79234033 | MS.gene81430:intron |
| TGACATAGTCAGCAAAGGAG+GGG | 0.637780 | 5.2:+79234237 | MS.gene81430:CDS |
| AATGGAAAAGACATTACCGC+GGG | 0.638544 | 5.2:+79233876 | MS.gene81430:CDS |
| GTGCTTGACATAGTCAGCAA+AGG | 0.639899 | 5.2:+79234232 | MS.gene81430:CDS |
| GGTCTTACTTACAAGGACTC+CGG | 0.645432 | 5.2:+79231823 | MS.gene81430:CDS |
| TACTGATGGTGTTGGGACGA+AGG | 0.646206 | 5.2:+79232663 | MS.gene81430:CDS |
| CAAAATGTGGGTGATTGTAG+CGG | 0.661076 | 5.2:-79231692 | None:intergenic |
| GGTCCTTGTAGCCACTCCAG+AGG | 0.662924 | 5.2:+79234561 | MS.gene81430:CDS |
| GGAATTGCCCATATTACTGG+TGG | 0.664696 | 5.2:+79234265 | MS.gene81430:CDS |
| TCTGATTGTGCTCTTCTCGG+AGG | 0.665825 | 5.2:+79233040 | MS.gene81430:CDS |
| ACCGATAAGAATGTCGCCCG+CGG | 0.680506 | 5.2:-79233892 | None:intergenic |
| GTATGATCTTAGTGGTTGTG+CGG | 0.694362 | 5.2:+79233824 | MS.gene81430:CDS |
| CAATGGAAAAGACATTACCG+CGG | 0.734778 | 5.2:+79233875 | MS.gene81430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTTATAAAATTAT+TGG | + | chr5.2:79233984-79234003 | MS.gene81430:intron | 0.0% |
| !!! | TGAAATATATCAATATATTT+TGG | + | chr5.2:79234012-79234031 | MS.gene81430:intron | 10.0% |
| !! | AAAAGAATCTTTAAATTACA+AGG | - | chr5.2:79232342-79232361 | None:intergenic | 15.0% |
| !! | AAGTAATCTAGGAAAAATAA+AGG | - | chr5.2:79232863-79232882 | None:intergenic | 20.0% |
| !! | AAGTGTATAAAACTAATTAG+AGG | - | chr5.2:79233764-79233783 | None:intergenic | 20.0% |
| !! | ACATCAAATTTCAGAATTAA+AGG | + | chr5.2:79232378-79232397 | MS.gene81430:intron | 20.0% |
| !! | CAAAGAATCTTTAAATTACA+AGG | + | chr5.2:79232486-79232505 | MS.gene81430:intron | 20.0% |
| !! | CAAATCAATATCCAATAAAA+AGG | - | chr5.2:79232606-79232625 | None:intergenic | 20.0% |
| !! | TGTTTGAATAAAATGTCAAT+AGG | - | chr5.2:79233583-79233602 | None:intergenic | 20.0% |
| !!! | AATTTGATCTTCAAATCTTT+TGG | + | chr5.2:79234444-79234463 | MS.gene81430:intron | 20.0% |
| !!! | TAAATGGTTTTATTGGAATT+TGG | + | chr5.2:79233413-79233432 | MS.gene81430:intron | 20.0% |
| !!! | TTTGTTTAGTTCCTTTTTAT+TGG | + | chr5.2:79232592-79232611 | MS.gene81430:intron | 20.0% |
| ! | AAAAAGGAACTAAACAAACA+AGG | - | chr5.2:79232590-79232609 | None:intergenic | 25.0% |
| ! | AAAAGAAAAATGAGTTACCA+AGG | - | chr5.2:79231933-79231952 | None:intergenic | 25.0% |
| ! | AAAAGGAACTAAACAAACAA+GGG | - | chr5.2:79232589-79232608 | None:intergenic | 25.0% |
| ! | AAAGAAAAATGAGTTACCAA+GGG | - | chr5.2:79231932-79231951 | None:intergenic | 25.0% |
| ! | AACTAAGATCTATGTTAAAC+AGG | + | chr5.2:79234119-79234138 | MS.gene81430:CDS | 25.0% |
| ! | AAGTCGTAATTCTTCTTATT+AGG | + | chr5.2:79233459-79233478 | MS.gene81430:intron | 25.0% |
| ! | AATCAATTCTACATGCAAAA+TGG | - | chr5.2:79231971-79231990 | None:intergenic | 25.0% |
| ! | ACAAAATAAATGATGTGGTA+GGG | - | chr5.2:79232438-79232457 | None:intergenic | 25.0% |
| ! | ACCCTAAATTTATTATGAGT+TGG | - | chr5.2:79233130-79233149 | None:intergenic | 25.0% |
| ! | ACTGTACAAAATAAATGATG+TGG | - | chr5.2:79232443-79232462 | None:intergenic | 25.0% |
| ! | ATAAGATTGCAATAAGCTAA+TGG | - | chr5.2:79233606-79233625 | None:intergenic | 25.0% |
| ! | GAATCTTTAAATTACAAGGT+TGG | + | chr5.2:79232490-79232509 | MS.gene81430:intron | 25.0% |
| ! | GAATCTTTAAATTACAAGGT+TGG | - | chr5.2:79232509-79232490 | None:intergenic | 25.0% |
| ! | GCCAACTCATAATAAATTTA+GGG | + | chr5.2:79233126-79233145 | MS.gene81430:intron | 25.0% |
| ! | GTTATAAAAGGAATTGTTGA+TGG | + | chr5.2:79233007-79233026 | MS.gene81430:CDS | 25.0% |
| ! | TACAAAATAAATGATGTGGT+AGG | - | chr5.2:79232439-79232458 | None:intergenic | 25.0% |
| ! | TGCCAACTCATAATAAATTT+AGG | + | chr5.2:79233125-79233144 | MS.gene81430:intron | 25.0% |
| ! | TGTTTAACATAGATCTTAGT+TGG | - | chr5.2:79234120-79234139 | None:intergenic | 25.0% |
| !! | AATGTCTTTTCCATTGATAA+CGG | - | chr5.2:79233871-79233890 | None:intergenic | 25.0% |
| !! | CAATAAAACCATTTAGAATG+AGG | - | chr5.2:79233408-79233427 | None:intergenic | 25.0% |
| !! | GCAAAAAACATTTTTACAGT+GGG | - | chr5.2:79232311-79232330 | None:intergenic | 25.0% |
| !! | TAGAATTGATTCTAACGTAA+CGG | + | chr5.2:79231980-79231999 | MS.gene81430:intron | 25.0% |
| !! | TGCAAAAAACATTTTTACAG+TGG | - | chr5.2:79232312-79232331 | None:intergenic | 25.0% |
| !!! | AGAGGTATTGAAATATTTTG+TGG | + | chr5.2:79233063-79233082 | MS.gene81430:intron | 25.0% |
| !!! | CTCATTCTAAATGGTTTTAT+TGG | + | chr5.2:79233406-79233425 | MS.gene81430:intron | 25.0% |
| !!! | TAATTCTGAAATTTGATGTC+AGG | - | chr5.2:79232377-79232396 | None:intergenic | 25.0% |
| !!! | TTCAGAATTAAAGGTACTTT+TGG | + | chr5.2:79232387-79232406 | MS.gene81430:intron | 25.0% |
| !!! | TTTTGATTGTTTTTCTCTCT+AGG | + | chr5.2:79232796-79232815 | MS.gene81430:intron | 25.0% |
| AAGAAAAATGAGTTACCAAG+GGG | - | chr5.2:79231931-79231950 | None:intergenic | 30.0% | |
| AAGAAAGATTCCGTTATCAA+TGG | + | chr5.2:79233858-79233877 | MS.gene81430:CDS | 30.0% | |
| AGAAAACCACAATAGAACAA+AGG | + | chr5.2:79233301-79233320 | MS.gene81430:intron | 30.0% | |
| AGACAACTTCAAGATCAAAA+GGG | - | chr5.2:79234194-79234213 | None:intergenic | 30.0% | |
| ATAGAAGACCTCATTCTAAA+TGG | + | chr5.2:79233397-79233416 | MS.gene81430:intron | 30.0% | |
| ATTCTACATGCAAAATGGAA+TGG | - | chr5.2:79231966-79231985 | None:intergenic | 30.0% | |
| ATTGCTAGTATCTGATATTG+AGG | + | chr5.2:79233210-79233229 | MS.gene81430:intron | 30.0% | |
| GAAGAAGAGAAAATCAAATG+AGG | - | chr5.2:79232985-79233004 | None:intergenic | 30.0% | |
| GACATGTTCAATTGCTTATT+TGG | + | chr5.2:79233486-79233505 | MS.gene81430:intron | 30.0% | |
| GAGAAAATCAAATGAGGAAT+AGG | - | chr5.2:79232979-79232998 | None:intergenic | 30.0% | |
| GTTCAATTGCTTATTTGGAT+AGG | + | chr5.2:79233491-79233510 | MS.gene81430:intron | 30.0% | |
| TACTAATTACCTCTCACATT+AGG | + | chr5.2:79234483-79234502 | MS.gene81430:intron | 30.0% | |
| TCAAACAAGGAAATTACAGA+CGG | + | chr5.2:79232517-79232536 | MS.gene81430:intron | 30.0% | |
| TGTGGTTTATTCTTTCCAAT+TGG | + | chr5.2:79233081-79233100 | MS.gene81430:intron | 30.0% | |
| TTAAGCGCTTATAGCATAAA+CGG | - | chr5.2:79232167-79232186 | None:intergenic | 30.0% | |
| TTCTATATACAAAGACTCGT+GGG | + | chr5.2:79234336-79234355 | MS.gene81430:CDS | 30.0% | |
| TTGCTAGTATCTGATATTGA+GGG | + | chr5.2:79233211-79233230 | MS.gene81430:intron | 30.0% | |
| ! | AGTTTGAGGTATACTTATTG+AGG | + | chr5.2:79233261-79233280 | MS.gene81430:intron | 30.0% |
| ! | ATGATGCGCACTTTTAATAT+GGG | + | chr5.2:79234529-79234548 | MS.gene81430:CDS | 30.0% |
| ! | GATTGATCTGGTAAACATTT+TGG | + | chr5.2:79232726-79232745 | MS.gene81430:intron | 30.0% |
| ! | TCTCTTCTTCAGGTTATAAA+AGG | + | chr5.2:79232995-79233014 | MS.gene81430:intron | 30.0% |
| ! | TTGAGTGTTTCTGTTACTTA+GGG | + | chr5.2:79232767-79232786 | MS.gene81430:intron | 30.0% |
| ! | TTTGAGTGTTTCTGTTACTT+AGG | + | chr5.2:79232766-79232785 | MS.gene81430:intron | 30.0% |
| !! | ATGGTTTTTCACTTGTTAGA+AGG | + | chr5.2:79233940-79233959 | MS.gene81430:CDS | 30.0% |
| !! | CATTTGATTTTCTCTTCTTC+AGG | + | chr5.2:79232985-79233004 | MS.gene81430:intron | 30.0% |
| !! | TTTTTCACTTGTTAGAAGGT+TGG | + | chr5.2:79233944-79233963 | MS.gene81430:intron | 30.0% |
| !!! | GTCTCTTGTCTTTTTGAAAT+AGG | + | chr5.2:79234210-79234229 | MS.gene81430:intron | 30.0% |
| AAATAAATGATGTGGTAGGG+AGG | - | chr5.2:79232435-79232454 | None:intergenic | 35.0% | |
| AGAAAAATGAGTTACCAAGG+GGG | - | chr5.2:79231930-79231949 | None:intergenic | 35.0% | |
| ATATATGCGGGAAAAGTTTG+AGG | + | chr5.2:79233247-79233266 | MS.gene81430:intron | 35.0% | |
| CAAACAAGGAAATTACAGAC+GGG | + | chr5.2:79232518-79232537 | MS.gene81430:intron | 35.0% | |
| CATTTAGATAAGCTTGAGTC+GGG | + | chr5.2:79233327-79233346 | MS.gene81430:intron | 35.0% | |
| CTTCTATATACAAAGACTCG+TGG | + | chr5.2:79234335-79234354 | MS.gene81430:CDS | 35.0% | |
| GACAACTTCAAGATCAAAAG+GGG | - | chr5.2:79234193-79234212 | None:intergenic | 35.0% | |
| GACTTGAATAGATCATTGCA+TGG | - | chr5.2:79233444-79233463 | None:intergenic | 35.0% | |
| GAGACAACTTCAAGATCAAA+AGG | - | chr5.2:79234195-79234214 | None:intergenic | 35.0% | |
| GCATAGCATGAAATATATGC+GGG | + | chr5.2:79233235-79233254 | MS.gene81430:intron | 35.0% | |
| GCATTTAGATAAGCTTGAGT+CGG | + | chr5.2:79233326-79233345 | MS.gene81430:intron | 35.0% | |
| GGCATAGCATGAAATATATG+CGG | + | chr5.2:79233234-79233253 | MS.gene81430:intron | 35.0% | |
| GTTAAAGCTGAATTAGGTCA+AGG | + | chr5.2:79231802-79231821 | MS.gene81430:CDS | 35.0% | |
| GTTGCATCAGTTAAACCTAA+AGG | + | chr5.2:79231667-79231686 | MS.gene81430:CDS | 35.0% | |
| TCATTGAAAGATAAACTCCC+TGG | + | chr5.2:79234060-79234079 | MS.gene81430:CDS | 35.0% | |
| TGCTAGTATCTGATATTGAG+GGG | + | chr5.2:79233212-79233231 | MS.gene81430:intron | 35.0% | |
| TGGATTTCGATCAAATGTCA+GGG | + | chr5.2:79232546-79232565 | MS.gene81430:intron | 35.0% | |
| TTCCTAGATTACTTTGCTAC+TGG | + | chr5.2:79232869-79232888 | MS.gene81430:CDS | 35.0% | |
| ! | AAATGCCTGCAGTTTTCAAA+TGG | + | chr5.2:79234359-79234378 | MS.gene81430:CDS | 35.0% |
| ! | CGTCAATGACATTGTTACTT+CGG | + | chr5.2:79232829-79232848 | MS.gene81430:CDS | 35.0% |
| ! | CTCATTTTCATGAGTTCACT+AGG | + | chr5.2:79232042-79232061 | MS.gene81430:intron | 35.0% |
| ! | GATGATGCGCACTTTTAATA+TGG | + | chr5.2:79234528-79234547 | MS.gene81430:CDS | 35.0% |
| ! | GCACTTTTAATATGGGCATT+GGG | + | chr5.2:79234536-79234555 | MS.gene81430:CDS | 35.0% |
| ! | GTCAATGACATTGTTACTTC+GGG | + | chr5.2:79232830-79232849 | MS.gene81430:CDS | 35.0% |
| ! | GTTGCTGTTAAAGCTGAATT+AGG | + | chr5.2:79231796-79231815 | MS.gene81430:CDS | 35.0% |
| ! | TACAGTTGCAGAAGCTTTAA+TGG | + | chr5.2:79234092-79234111 | MS.gene81430:CDS | 35.0% |
| ! | TCAATGACATTGTTACTTCG+GGG | + | chr5.2:79232831-79232850 | MS.gene81430:CDS | 35.0% |
| ! | TCTGAAATTTGATGTCAGGA+AGG | - | chr5.2:79232373-79232392 | None:intergenic | 35.0% |
| !!! | TGATTTGACTTGTTTTGCGT+AGG | + | chr5.2:79232619-79232638 | MS.gene81430:intron | 35.0% |
| !!! | TTTTAATATGGGCATTGGGA+TGG | + | chr5.2:79234540-79234559 | MS.gene81430:CDS | 35.0% |
| AAGCTATGAATCTCAGCTTG+AGG | - | chr5.2:79232213-79232232 | None:intergenic | 40.0% | |
| AAGGGAATTGCCCATATTAC+TGG | + | chr5.2:79234262-79234281 | MS.gene81430:CDS | 40.0% | |
| AATAACTTCACCTATGCGGT+AGG | - | chr5.2:79234629-79234648 | None:intergenic | 40.0% | |
| AATGGAAAAGACATTACCGC+GGG | + | chr5.2:79233876-79233895 | MS.gene81430:CDS | 40.0% | |
| AATTACCTCTCACATTAGGC+TGG | + | chr5.2:79234487-79234506 | MS.gene81430:intron | 40.0% | |
| ACTGGCATTCATGACACTAT+TGG | + | chr5.2:79232703-79232722 | MS.gene81430:CDS | 40.0% | |
| AGGTCAAGGTCTTACTTACA+AGG | + | chr5.2:79231816-79231835 | MS.gene81430:CDS | 40.0% | |
| AGGTGAAGTTATTAGCGGAA+AGG | + | chr5.2:79234636-79234655 | MS.gene81430:CDS | 40.0% | |
| AGTATTCTATTAGCTGCCTC+TGG | - | chr5.2:79234580-79234599 | None:intergenic | 40.0% | |
| ATGCAGCCTTTGTTCTATTG+TGG | - | chr5.2:79233310-79233329 | None:intergenic | 40.0% | |
| ATGCCTGGTCTATACAAAGA+AGG | + | chr5.2:79233798-79233817 | MS.gene81430:CDS | 40.0% | |
| ATTACCTCTCACATTAGGCT+GGG | + | chr5.2:79234488-79234507 | MS.gene81430:intron | 40.0% | |
| CAAAATGTGGGTGATTGTAG+CGG | - | chr5.2:79231695-79231714 | None:intergenic | 40.0% | |
| CAAGGTTGGAATCTCAAACA+AGG | + | chr5.2:79232504-79232523 | MS.gene81430:intron | 40.0% | |
| CAATCTGATTGTGCTCTTCT+CGG | + | chr5.2:79233037-79233056 | MS.gene81430:CDS | 40.0% | |
| CAATGGAAAAGACATTACCG+CGG | + | chr5.2:79233875-79233894 | MS.gene81430:CDS | 40.0% | |
| CGCATAGGTGAAGTTATTAG+CGG | + | chr5.2:79234631-79234650 | MS.gene81430:CDS | 40.0% | |
| CGCTAATAACTTCACCTATG+CGG | - | chr5.2:79234633-79234652 | None:intergenic | 40.0% | |
| CTGGATTTCGATCAAATGTC+AGG | + | chr5.2:79232545-79232564 | MS.gene81430:intron | 40.0% | |
| CTGGCATTCATGACACTATT+GGG | + | chr5.2:79232704-79232723 | MS.gene81430:CDS | 40.0% | |
| GAAGGTGAGTATGATCTTAG+TGG | + | chr5.2:79233816-79233835 | MS.gene81430:CDS | 40.0% | |
| GACCAGTAGCAAAGTAATCT+AGG | - | chr5.2:79232874-79232893 | None:intergenic | 40.0% | |
| GATTGCAATGCGCAAAATGT+GGG | - | chr5.2:79231707-79231726 | None:intergenic | 40.0% | |
| GATTTCGATCAAATGTCAGG+GGG | + | chr5.2:79232548-79232567 | MS.gene81430:intron | 40.0% | |
| GCTAGTATCTGATATTGAGG+GGG | + | chr5.2:79233213-79233232 | MS.gene81430:intron | 40.0% | |
| GGATTTCGATCAAATGTCAG+GGG | + | chr5.2:79232547-79232566 | MS.gene81430:intron | 40.0% | |
| GGTGAAGTTATTAGCGGAAA+GGG | + | chr5.2:79234637-79234656 | MS.gene81430:CDS | 40.0% | |
| GTATGATCTTAGTGGTTGTG+CGG | + | chr5.2:79233824-79233843 | MS.gene81430:CDS | 40.0% | |
| GTCATGAATGCCAGTTTCAA+AGG | - | chr5.2:79232698-79232717 | None:intergenic | 40.0% | |
| TCAAGTGGAGTTCACTCTAA+TGG | + | chr5.2:79233921-79233940 | MS.gene81430:CDS | 40.0% | |
| TCACCTTCTTTGTATAGACC+AGG | - | chr5.2:79233804-79233823 | None:intergenic | 40.0% | |
| TGAAGCCATTTGAAAACTGC+AGG | - | chr5.2:79234367-79234386 | None:intergenic | 40.0% | |
| TGACACTATTGGGATTGATC+TGG | + | chr5.2:79232714-79232733 | MS.gene81430:CDS | 40.0% | |
| TGTTCGAAGAATTGCCAAGA+TGG | + | chr5.2:79231873-79231892 | MS.gene81430:CDS | 40.0% | |
| TTAGAGTGAACTCCACTTGA+TGG | - | chr5.2:79233921-79233940 | None:intergenic | 40.0% | |
| TTGACATAGTCAGCAAAGGA+GGG | + | chr5.2:79234236-79234255 | MS.gene81430:CDS | 40.0% | |
| ! | AAACCTTCTGGAAAAACTCG+AGG | - | chr5.2:79234310-79234329 | None:intergenic | 40.0% |
| ! | AGGTGATTTTCCCAAATGAC+AGG | - | chr5.2:79232415-79232434 | None:intergenic | 40.0% |
| ! | AGTTTTCAAATGGCTTCAGC+AGG | + | chr5.2:79234369-79234388 | MS.gene81430:CDS | 40.0% |
| ! | ATTCCTCGAGTTTTTCCAGA+AGG | + | chr5.2:79234304-79234323 | MS.gene81430:CDS | 40.0% |
| ! | CAATGACATTGTTACTTCGG+GGG | + | chr5.2:79232832-79232851 | MS.gene81430:CDS | 40.0% |
| ! | CACATTTTGCGCATTGCAAT+CGG | + | chr5.2:79231706-79231725 | MS.gene81430:CDS | 40.0% |
| ! | CGAGTTTTTCCAGAAGGTTT+TGG | + | chr5.2:79234310-79234329 | MS.gene81430:CDS | 40.0% |
| ! | CGCACTTTTAATATGGGCAT+TGG | + | chr5.2:79234535-79234554 | MS.gene81430:CDS | 40.0% |
| ! | GGTAGAGTACTTGAGAAAAG+CGG | + | chr5.2:79234033-79234052 | MS.gene81430:intron | 40.0% |
| ! | GGTGATTTTCCCAAATGACA+GGG | - | chr5.2:79232414-79232433 | None:intergenic | 40.0% |
| ! | GTGATTTTCCCAAATGACAG+GGG | - | chr5.2:79232413-79232432 | None:intergenic | 40.0% |
| ! | TATTTTCCAACATACCCCAG+TGG | + | chr5.2:79232285-79232304 | MS.gene81430:intron | 40.0% |
| !! | ATAGAAGCACCAAAACCTTC+TGG | - | chr5.2:79234322-79234341 | None:intergenic | 40.0% |
| !! | CTTATCGGTTTACCATCAAG+TGG | + | chr5.2:79233906-79233925 | MS.gene81430:CDS | 40.0% |
| AGTTGTGCGTGTGTGAGAAA+AGG | - | chr5.2:79233694-79233713 | None:intergenic | 45.0% | |
| ATCTTAGTGGTTGTGCGGTT+GGG | + | chr5.2:79233829-79233848 | MS.gene81430:CDS | 45.0% | |
| ATTGCCCATATTACTGGTGG+CGG | + | chr5.2:79234268-79234287 | MS.gene81430:CDS | 45.0% | |
| CGATTGCAATGCGCAAAATG+TGG | - | chr5.2:79231708-79231727 | None:intergenic | 45.0% | |
| CTTGACATAGTCAGCAAAGG+AGG | + | chr5.2:79234235-79234254 | MS.gene81430:CDS | 45.0% | |
| GAAACCGCCACCAGTAATAT+GGG | - | chr5.2:79234275-79234294 | None:intergenic | 45.0% | |
| GAAATTACAGACGGGCAAAC+TGG | + | chr5.2:79232526-79232545 | MS.gene81430:intron | 45.0% | |
| GGAATTGCCCATATTACTGG+TGG | + | chr5.2:79234265-79234284 | MS.gene81430:CDS | 45.0% | |
| GGATGTTGCTGAACAGGTAA+TGG | + | chr5.2:79232904-79232923 | MS.gene81430:intron | 45.0% | |
| GGTCTTACTTACAAGGACTC+CGG | + | chr5.2:79231823-79231842 | MS.gene81430:CDS | 45.0% | |
| GGTGATTCATATCTCGTTGC+TGG | + | chr5.2:79232640-79232659 | MS.gene81430:intron | 45.0% | |
| GTGCTTGACATAGTCAGCAA+AGG | + | chr5.2:79234232-79234251 | MS.gene81430:CDS | 45.0% | |
| GTTCAGCAACATCCACATCA+AGG | - | chr5.2:79232898-79232917 | None:intergenic | 45.0% | |
| GTTGGCAAGAATAGACGAGA+CGG | - | chr5.2:79233112-79233131 | None:intergenic | 45.0% | |
| TCTCAGCTTGAGGTCTTGAT+AGG | - | chr5.2:79232203-79232222 | None:intergenic | 45.0% | |
| TGAAACCGCCACCAGTAATA+TGG | - | chr5.2:79234276-79234295 | None:intergenic | 45.0% | |
| TGACATAGTCAGCAAAGGAG+GGG | + | chr5.2:79234237-79234256 | MS.gene81430:CDS | 45.0% | |
| TGATGTGGATGTTGCTGAAC+AGG | + | chr5.2:79232898-79232917 | MS.gene81430:CDS | 45.0% | |
| ! | ACATTTTTACAGTGGGCCAC+TGG | - | chr5.2:79232304-79232323 | None:intergenic | 45.0% |
| ! | ATTTTGCGCATTGCAATCGG+CGG | + | chr5.2:79231709-79231728 | MS.gene81430:CDS | 45.0% |
| ! | ATTTTTACAGTGGGCCACTG+GGG | - | chr5.2:79232302-79232321 | None:intergenic | 45.0% |
| ! | CATTTTTACAGTGGGCCACT+GGG | - | chr5.2:79232303-79232322 | None:intergenic | 45.0% |
| ! | TACTTTTGGCCCCTGTCATT+TGG | + | chr5.2:79232401-79232420 | MS.gene81430:intron | 45.0% |
| ! | TATCTCGTTGCTGGTACTGA+TGG | + | chr5.2:79232649-79232668 | MS.gene81430:CDS | 45.0% |
| !! | ACTTTTGGCCCCTGTCATTT+GGG | + | chr5.2:79232402-79232421 | MS.gene81430:intron | 45.0% |
| !! | GTAATGGATGTGCTTCTAGC+TGG | + | chr5.2:79232920-79232939 | MS.gene81430:intron | 45.0% |
| !! | GTGATGCTTGCCTTTGAAAC+TGG | + | chr5.2:79232685-79232704 | MS.gene81430:CDS | 45.0% |
| !! | TTGCTGGTACTGATGGTGTT+GGG | + | chr5.2:79232656-79232675 | MS.gene81430:CDS | 45.0% |
| ACAGAGAAAGCCTACCGCAT+AGG | + | chr5.2:79234616-79234635 | MS.gene81430:CDS | 50.0% | |
| ACCAGCGTCAATGTCAACTC+CGG | - | chr5.2:79231845-79231864 | None:intergenic | 50.0% | |
| AGAATTGCCAAGATGGCTCC+CGG | + | chr5.2:79231880-79231899 | MS.gene81430:CDS | 50.0% | |
| AGTCAGCAAAGGAGGGGTAA+AGG | + | chr5.2:79234243-79234262 | MS.gene81430:CDS | 50.0% | |
| GACGAGACGGCAAATCCAAT+TGG | - | chr5.2:79233099-79233118 | None:intergenic | 50.0% | |
| GATAAGCTTGAGTCGGGTAG+AGG | + | chr5.2:79233333-79233352 | MS.gene81430:intron | 50.0% | |
| GATCTTAGTGGTTGTGCGGT+TGG | + | chr5.2:79233828-79233847 | MS.gene81430:CDS | 50.0% | |
| GTCAGCAAAGGAGGGGTAAA+GGG | + | chr5.2:79234244-79234263 | MS.gene81430:CDS | 50.0% | |
| GTGATTGTAGCGGTGCCTTT+AGG | - | chr5.2:79231685-79231704 | None:intergenic | 50.0% | |
| TCTGATTGTGCTCTTCTCGG+AGG | + | chr5.2:79233040-79233059 | MS.gene81430:CDS | 50.0% | |
| TCTTCCCAGCCTAATGTGAG+AGG | - | chr5.2:79234495-79234514 | None:intergenic | 50.0% | |
| TGCTACTGGTCACCTTGATG+TGG | + | chr5.2:79232883-79232902 | MS.gene81430:CDS | 50.0% | |
| TTCGGTGGTTTATTCCCCCT+TGG | + | chr5.2:79231913-79231932 | MS.gene81430:CDS | 50.0% | |
| TTTCAGACTGCAGAGATGCC+TGG | + | chr5.2:79233783-79233802 | MS.gene81430:intron | 50.0% | |
| ! | GGATGTGCTTCTAGCTGGTT+TGG | + | chr5.2:79232925-79232944 | MS.gene81430:intron | 50.0% |
| ! | TACTGATGGTGTTGGGACGA+AGG | + | chr5.2:79232663-79232682 | MS.gene81430:CDS | 50.0% |
| ! | TCTATTAGCTGCCTCTGGAG+TGG | - | chr5.2:79234575-79234594 | None:intergenic | 50.0% |
| !! | GTTGCTGGTACTGATGGTGT+TGG | + | chr5.2:79232655-79232674 | MS.gene81430:CDS | 50.0% |
| ACCGATAAGAATGTCGCCCG+CGG | - | chr5.2:79233895-79233914 | None:intergenic | 55.0% | |
| ACCGCGGGCGACATTCTTAT+CGG | + | chr5.2:79233891-79233910 | MS.gene81430:CDS | 55.0% | |
| CAACTGTAGTGCTAGCGCCA+GGG | - | chr5.2:79234080-79234099 | None:intergenic | 55.0% | |
| GAATTGCCAAGATGGCTCCC+GGG | + | chr5.2:79231881-79231900 | MS.gene81430:CDS | 55.0% | |
| TCCGGAGTTGACATTGACGC+TGG | + | chr5.2:79231841-79231860 | MS.gene81430:CDS | 55.0% | |
| TTGTGCTCTTCTCGGAGGAG+AGG | + | chr5.2:79233045-79233064 | MS.gene81430:CDS | 55.0% | |
| AAGATGGCTCCCGGGATTGG+TGG | + | chr5.2:79231889-79231908 | MS.gene81430:CDS | 60.0% | |
| ACCAATCCCGGGAGCCATCT+TGG | - | chr5.2:79231890-79231909 | None:intergenic | 60.0% | |
| ACCACCGAAGCCACCAATCC+CGG | - | chr5.2:79231902-79231921 | None:intergenic | 60.0% | |
| AGTGGGCCACTGGGGTATGT+TGG | - | chr5.2:79232294-79232313 | None:intergenic | 60.0% | |
| GCAACTGTAGTGCTAGCGCC+AGG | - | chr5.2:79234081-79234100 | None:intergenic | 60.0% | |
| GGTCCTTGTAGCCACTCCAG+AGG | + | chr5.2:79234561-79234580 | MS.gene81430:CDS | 60.0% | |
| !! | CTGCCTCTGGAGTGGCTACA+AGG | - | chr5.2:79234567-79234586 | None:intergenic | 60.0% |
| CCACCGAAGCCACCAATCCC+GGG | - | chr5.2:79231901-79231920 | None:intergenic | 65.0% | |
| GCCAAGATGGCTCCCGGGAT+TGG | + | chr5.2:79231886-79231905 | MS.gene81430:CDS | 65.0% | |
| ! | GCTCCCGGGATTGGTGGCTT+CGG | + | chr5.2:79231895-79231914 | MS.gene81430:CDS | 65.0% |
| ! | CCCGGGATTGGTGGCTTCGG+TGG | + | chr5.2:79231898-79231917 | MS.gene81430:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 79231625 | 79234675 | 79231625 | ID=MS.gene81430 |
| chr5.2 | mRNA | 79231625 | 79234675 | 79231625 | ID=MS.gene81430.t1;Parent=MS.gene81430 |
| chr5.2 | exon | 79231625 | 79231934 | 79231625 | ID=MS.gene81430.t1.exon1;Parent=MS.gene81430.t1 |
| chr5.2 | CDS | 79231625 | 79231934 | 79231625 | ID=cds.MS.gene81430.t1;Parent=MS.gene81430.t1 |
| chr5.2 | exon | 79232641 | 79232735 | 79232641 | ID=MS.gene81430.t1.exon2;Parent=MS.gene81430.t1 |
| chr5.2 | CDS | 79232641 | 79232735 | 79232641 | ID=cds.MS.gene81430.t1;Parent=MS.gene81430.t1 |
| chr5.2 | exon | 79232818 | 79232919 | 79232818 | ID=MS.gene81430.t1.exon3;Parent=MS.gene81430.t1 |
| chr5.2 | CDS | 79232818 | 79232919 | 79232818 | ID=cds.MS.gene81430.t1;Parent=MS.gene81430.t1 |
| chr5.2 | exon | 79233007 | 79233066 | 79233007 | ID=MS.gene81430.t1.exon4;Parent=MS.gene81430.t1 |
| chr5.2 | CDS | 79233007 | 79233066 | 79233007 | ID=cds.MS.gene81430.t1;Parent=MS.gene81430.t1 |
| chr5.2 | exon | 79233789 | 79233961 | 79233789 | ID=MS.gene81430.t1.exon5;Parent=MS.gene81430.t1 |
| chr5.2 | CDS | 79233789 | 79233961 | 79233789 | ID=cds.MS.gene81430.t1;Parent=MS.gene81430.t1 |
| chr5.2 | exon | 79234038 | 79234140 | 79234038 | ID=MS.gene81430.t1.exon6;Parent=MS.gene81430.t1 |
| chr5.2 | CDS | 79234038 | 79234140 | 79234038 | ID=cds.MS.gene81430.t1;Parent=MS.gene81430.t1 |
| chr5.2 | exon | 79234232 | 79234390 | 79234232 | ID=MS.gene81430.t1.exon7;Parent=MS.gene81430.t1 |
| chr5.2 | CDS | 79234232 | 79234390 | 79234232 | ID=cds.MS.gene81430.t1;Parent=MS.gene81430.t1 |
| chr5.2 | exon | 79234505 | 79234675 | 79234505 | ID=MS.gene81430.t1.exon8;Parent=MS.gene81430.t1 |
| chr5.2 | CDS | 79234505 | 79234675 | 79234505 | ID=cds.MS.gene81430.t1;Parent=MS.gene81430.t1 |
| Gene Sequence |
| Protein sequence |
