AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81513

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81513.t1 MTR_2g449850 77.451 102 23 0 1 102 362 463 5.88e-50 164
MS.gene81513.t1 MTR_3g434850 71.845 103 29 0 1 103 354 456 1.31e-48 160
MS.gene81513.t1 MTR_1g040370 72.277 101 28 0 1 101 315 415 1.92e-44 149
MS.gene81513.t1 MTR_3g498755 61.165 103 40 0 1 103 345 447 1.08e-41 142
MS.gene81513.t1 MTR_1g102130 64.356 101 36 0 1 101 390 490 1.45e-41 143
MS.gene81513.t1 MTR_8g099930 61.386 101 39 0 1 101 362 462 2.02e-40 139
MS.gene81513.t1 MTR_7g021130 60.396 101 40 0 1 101 357 457 3.55e-40 139
MS.gene81513.t1 MTR_3g090130 46.667 105 56 0 1 105 356 460 9.06e-32 116
MS.gene81513.t1 MTR_3g090150 49.505 101 51 0 1 101 363 463 2.89e-31 115
MS.gene81513.t1 MTR_5g072570 46.154 104 56 0 1 104 361 464 3.02e-29 109
MS.gene81513.t1 MTR_2g062990 40.404 99 54 2 5 103 371 464 6.28e-21 86.7
MS.gene81513.t1 MTR_7g013790 46.465 99 48 2 5 103 373 466 7.26e-21 86.3
MS.gene81513.t1 MTR_2g062980 40.404 99 54 2 5 103 371 464 1.14e-20 85.9
MS.gene81513.t1 MTR_2g063000 39.394 99 55 2 5 103 341 434 1.84e-20 85.1
MS.gene81513.t1 MTR_2g063000 39.394 99 55 2 5 103 372 465 2.19e-20 85.1
MS.gene81513.t1 MTR_2g081620 38.384 99 56 2 5 103 372 465 1.58e-19 82.8
MS.gene81513.t1 MTR_2g012860 41.414 99 53 2 5 103 382 475 1.77e-19 82.4
MS.gene81513.t1 MTR_1g095560 38.000 100 57 2 5 104 365 459 6.52e-19 80.9
MS.gene81513.t1 MTR_4g089155 38.776 98 55 2 5 102 394 486 7.49e-19 80.9
MS.gene81513.t1 MTR_4g122960 38.000 100 57 2 5 104 384 478 2.68e-18 79.3
MS.gene81513.t1 MTR_2g018600 36.458 96 57 1 5 100 378 469 2.91e-18 79.0
MS.gene81513.t1 MTR_4g122950 38.000 100 57 2 5 104 386 480 6.72e-18 78.2
MS.gene81513.t1 MTR_1g095540 36.735 98 57 2 5 102 365 457 7.40e-18 77.8
MS.gene81513.t1 MTR_3g100420 37.500 96 56 1 5 100 405 496 1.47e-17 77.0
MS.gene81513.t1 MTR_2g018590 35.417 96 58 1 5 100 378 469 1.53e-17 77.0
MS.gene81513.t1 MTR_4g075150 39.604 101 56 2 1 101 366 461 4.34e-17 75.9
MS.gene81513.t1 MTR_4g075150 39.604 101 56 2 1 101 368 463 4.35e-17 75.9
MS.gene81513.t1 MTR_3g079600 40.206 97 52 3 5 101 400 490 8.22e-17 75.1
MS.gene81513.t1 MTR_2g012850 38.776 98 55 2 5 102 374 466 8.29e-17 75.1
MS.gene81513.t1 MTR_4g021520 36.264 91 54 1 5 95 379 465 9.43e-17 74.7
MS.gene81513.t1 MTR_3g079590 39.785 93 51 2 5 97 399 486 9.50e-17 74.7
MS.gene81513.t1 MTR_4g021510 40.230 87 48 1 5 91 378 460 1.26e-16 74.3
MS.gene81513.t1 MTR_4g021490 36.264 91 54 1 5 95 379 465 1.51e-16 74.3
MS.gene81513.t1 MTR_3g079570 39.785 93 51 2 5 97 399 486 2.05e-16 73.9
MS.gene81513.t1 MTR_1g021020 36.364 99 58 2 5 103 396 489 2.19e-16 73.9
MS.gene81513.t1 MTR_0003s0560 37.624 101 59 1 1 101 391 487 2.74e-16 73.6
MS.gene81513.t1 MTR_1g021010 36.364 99 58 2 5 103 395 488 3.02e-16 73.6
MS.gene81513.t1 MTR_1g020090 36.000 100 59 2 5 104 406 500 3.25e-16 73.2
MS.gene81513.t1 MTR_0075s0010 72.917 48 13 0 1 48 277 324 3.36e-16 72.8
MS.gene81513.t1 MTR_2g018630 36.458 96 57 1 5 100 269 360 6.10e-16 72.4
MS.gene81513.t1 MTR_2g018630 36.458 96 57 1 5 100 374 465 1.18e-15 71.6
MS.gene81513.t1 MTR_2g039800 66.667 45 15 0 56 100 50 94 1.90e-15 66.6
MS.gene81513.t1 MTR_3g034290 35.644 101 61 1 1 101 394 490 2.00e-15 70.9
MS.gene81513.t1 MTR_3g079560 35.714 98 58 2 5 102 399 491 2.81e-15 70.5
MS.gene81513.t1 MTR_8g011350 34.375 96 59 1 5 100 404 495 3.79e-15 70.1
MS.gene81513.t1 MTR_4g021535 35.165 91 55 1 5 95 375 461 5.58e-15 69.7
MS.gene81513.t1 MTR_4g021500 34.444 90 55 1 5 94 379 464 6.07e-15 69.7
MS.gene81513.t1 MTR_4g021500 34.066 91 56 1 5 95 796 882 2.48e-14 68.2
MS.gene81513.t1 MTR_4g021500 34.444 90 55 1 5 94 379 464 6.19e-15 69.7
MS.gene81513.t1 MTR_4g021500 34.066 91 56 1 5 95 814 900 2.51e-14 68.2
MS.gene81513.t1 MTR_4g021535 35.165 91 55 1 5 95 328 414 6.25e-15 69.7
MS.gene81513.t1 MTR_3g079620 34.579 107 56 3 5 102 398 499 1.48e-14 68.6
MS.gene81513.t1 MTR_4g021530 35.417 96 58 1 5 100 379 470 1.49e-14 68.6
MS.gene81513.t1 MTR_7g080180 33.333 96 60 1 5 100 407 498 3.38e-14 67.4
MS.gene81513.t1 MTR_7g051430 32.258 93 59 1 5 97 404 492 4.27e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81513.t1 AT2G33530 62.376 101 38 0 1 101 362 462 8.00e-38 132
MS.gene81513.t1 AT1G28110 60.396 101 40 0 1 101 358 458 1.86e-37 131
MS.gene81513.t1 AT1G28110 60.396 101 40 0 1 101 358 458 1.86e-37 131
MS.gene81513.t1 AT1G43780 50.962 104 51 0 1 104 370 473 7.85e-30 111
MS.gene81513.t1 AT5G42230 45.192 104 57 0 2 105 361 464 6.53e-28 105
MS.gene81513.t1 AT5G42230 45.192 104 57 0 2 105 361 464 6.53e-28 105
MS.gene81513.t1 AT5G42240 46.078 102 55 0 1 102 364 465 7.13e-28 105
MS.gene81513.t1 AT2G12480 40.909 110 65 0 2 111 358 467 7.37e-27 103
MS.gene81513.t1 AT2G12480 40.909 110 65 0 2 111 334 443 8.16e-27 102
MS.gene81513.t1 AT2G12480 40.909 110 65 0 2 111 332 441 8.37e-27 102
MS.gene81513.t1 AT2G12480 40.541 111 65 1 2 111 332 442 4.09e-25 98.2
MS.gene81513.t1 AT2G05850 42.574 101 54 1 1 101 388 484 2.12e-23 93.6
MS.gene81513.t1 AT3G52010 40.594 101 56 1 1 101 388 484 5.35e-22 89.7
MS.gene81513.t1 AT4G30610 45.361 97 48 2 5 101 371 462 8.09e-21 86.3
MS.gene81513.t1 AT3G52000 39.604 101 57 1 1 101 383 479 4.13e-20 84.3
MS.gene81513.t1 AT2G24010 46.392 97 47 3 5 101 371 462 8.11e-20 83.6
MS.gene81513.t1 AT2G24010 46.392 97 47 3 5 101 375 466 9.19e-20 83.6
MS.gene81513.t1 AT2G24010 46.392 97 47 3 5 101 360 451 1.03e-19 83.2
MS.gene81513.t1 AT5G08260 40.816 98 54 1 5 102 384 477 1.26e-19 83.2
MS.gene81513.t1 AT2G24000 47.423 97 44 3 5 100 307 397 1.34e-19 82.8
MS.gene81513.t1 AT3G63470 42.056 107 54 2 4 106 400 502 2.01e-19 82.4
MS.gene81513.t1 AT2G24000 47.423 97 44 3 5 100 370 460 3.14e-19 82.0
MS.gene81513.t1 AT4G30810 38.739 111 62 3 5 115 371 475 5.05e-19 81.3
MS.gene81513.t1 AT3G17180 34.694 98 60 1 5 102 383 476 1.32e-18 80.1
MS.gene81513.t1 AT1G11080 41.237 97 52 2 5 101 398 489 1.42e-18 80.1
MS.gene81513.t1 AT1G11080 41.237 97 52 2 5 101 398 489 1.43e-18 80.1
MS.gene81513.t1 AT3G02110 45.361 97 48 3 5 101 380 471 4.27e-18 78.6
MS.gene81513.t1 AT1G61130 41.237 97 52 2 5 101 369 460 5.99e-18 78.2
MS.gene81513.t1 AT4G12910 39.583 96 54 1 5 100 406 497 2.29e-17 76.6
MS.gene81513.t1 AT2G22960 36.559 93 54 2 8 100 97 184 2.42e-17 73.6
MS.gene81513.t1 AT4G15100 38.776 98 55 2 5 102 390 482 6.65e-17 75.5
MS.gene81513.t1 AT5G23210 42.574 101 53 2 2 102 306 401 1.88e-16 73.9
MS.gene81513.t1 AT1G73280 37.634 93 53 2 8 100 227 314 2.09e-16 73.2
MS.gene81513.t1 AT1G73280 37.634 93 53 2 8 100 252 339 2.18e-16 73.6
MS.gene81513.t1 AT1G73280 37.634 93 53 2 8 100 354 441 2.24e-16 73.9
MS.gene81513.t1 AT5G23210 42.574 101 53 2 2 102 305 400 2.62e-16 73.6
MS.gene81513.t1 AT5G36180 37.634 93 53 2 8 100 252 339 2.64e-16 73.2
MS.gene81513.t1 AT5G36180 37.634 93 53 2 8 100 252 339 2.64e-16 73.2
MS.gene81513.t1 AT5G36180 37.634 93 53 2 8 100 354 441 2.70e-16 73.6
MS.gene81513.t1 AT5G23210 42.574 101 53 2 2 102 401 496 3.50e-16 73.2
MS.gene81513.t1 AT2G35780 37.113 97 56 2 5 101 360 451 3.70e-16 73.2
MS.gene81513.t1 AT3G07990 32.990 97 60 2 5 101 366 457 6.00e-16 72.4
MS.gene81513.t1 AT2G22990 35.484 93 55 2 8 100 232 319 6.59e-16 72.0
MS.gene81513.t1 AT1G73300 36.559 93 54 2 8 100 354 441 8.30e-16 72.0
MS.gene81513.t1 AT1G73300 36.559 93 54 2 8 100 354 441 8.30e-16 72.0
MS.gene81513.t1 AT2G22990 35.484 93 55 2 8 100 346 433 9.81e-16 72.0
MS.gene81513.t1 AT2G22920 35.484 93 55 2 8 100 169 256 2.17e-15 69.7
MS.gene81513.t1 AT2G22990 34.409 93 56 2 8 100 232 319 2.32e-15 70.5
MS.gene81513.t1 AT2G22970 35.484 93 55 2 8 100 346 433 2.46e-15 70.9
MS.gene81513.t1 AT2G22990 34.409 93 56 2 8 100 337 424 4.41e-15 70.1
MS.gene81513.t1 AT2G22980 34.783 92 55 2 9 100 344 430 5.46e-15 69.7
MS.gene81513.t1 AT3G25420 34.375 96 59 1 5 100 403 494 6.40e-15 69.7
MS.gene81513.t1 AT2G22920 35.484 93 55 2 8 100 348 435 7.35e-15 69.3
MS.gene81513.t1 AT1G73290 33.333 93 57 2 8 100 351 438 8.21e-15 69.3
MS.gene81513.t1 AT3G10450 34.783 92 55 2 9 100 308 394 8.53e-15 69.3
MS.gene81513.t1 AT3G10450 34.783 92 55 2 9 100 351 437 9.22e-15 69.3
MS.gene81513.t1 AT3G52020 38.043 92 53 1 10 101 411 498 9.93e-15 68.9
MS.gene81513.t1 AT1G73270 34.409 93 56 2 8 100 354 441 1.15e-14 68.9
MS.gene81513.t1 AT1G73270 34.409 93 56 2 8 100 354 441 1.25e-14 68.9
MS.gene81513.t1 AT1G73310 34.783 92 55 2 9 100 355 441 1.42e-14 68.6
MS.gene81513.t1 AT2G23000 35.484 93 55 2 8 100 350 437 1.82e-14 68.2
MS.gene81513.t1 AT2G23000 35.484 93 55 2 8 100 350 437 1.82e-14 68.2
MS.gene81513.t1 AT5G09640 37.634 93 52 3 9 100 378 465 2.05e-14 68.2
MS.gene81513.t1 AT1G33540 34.444 90 54 2 11 100 337 421 2.98e-14 67.8
MS.gene81513.t1 AT1G33540 34.444 90 54 2 11 100 380 464 4.41e-14 67.4
MS.gene81513.t1 AT2G35770 34.000 100 60 3 5 102 364 459 4.77e-14 67.0
MS.gene81513.t1 AT2G23010 34.409 93 56 2 8 100 350 437 9.19e-14 66.2
MS.gene81513.t1 AT3G12203 32.609 92 57 2 9 100 293 379 2.05e-13 65.1
MS.gene81513.t1 AT3G12203 32.609 92 57 2 9 100 351 437 2.87e-13 65.1
MS.gene81513.t1 AT3G12203 32.609 92 57 2 9 100 330 416 3.37e-13 64.7
MS.gene81513.t1 AT2G23010 33.333 93 57 2 8 100 350 437 4.16e-13 64.3
MS.gene81513.t1 AT3G12240 35.870 92 54 2 9 100 350 436 1.31e-12 63.2
MS.gene81513.t1 AT3G12230 34.783 92 55 2 9 100 349 435 1.67e-12 62.8
MS.gene81513.t1 AT3G12220 33.696 92 56 2 9 100 319 405 2.36e-11 59.3
MS.gene81513.t1 AT3G12220 33.696 92 56 2 9 100 349 435 3.21e-11 58.9
MS.gene81513.t1 AT3G12220 33.696 92 56 2 9 100 297 383 8.98e-11 57.8

Find 36 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCGACTCGGTCGTTAATAA+AGG 0.275520 2.2:+34339993 MS.gene81513:CDS
GCTCGCGCAGGCTGAGAAAA+TGG 0.282066 2.2:-34340258 None:intergenic
CACTTGTTAAATCAGGGGTT+CGG 0.299311 2.2:+34339819 MS.gene81513:CDS
TTCTCAGCCTGCGCGAGCTT+TGG 0.334267 2.2:+34340263 MS.gene81513:CDS
TTCTCCCTGCAGTGGAGATC+AGG 0.347443 2.2:+34339951 MS.gene81513:intron
TTTATCATTTGCAACAATAA+GGG 0.347974 2.2:+34340218 MS.gene81513:CDS
TTAGGGCCACTTGTTAAATC+AGG 0.357193 2.2:+34339812 MS.gene81513:CDS
AACCCTACAATCTCTATGTT+AGG 0.358096 2.2:+34339794 None:intergenic
CCAACTATTAGTGAATTTGT+TGG 0.379336 2.2:+34340321 MS.gene81513:CDS
GGGTTCGGGTTCTAGCTTAC+AGG 0.380620 2.2:+34339834 MS.gene81513:CDS
CAACAGACTCGTATAGAGTT+TGG 0.407535 2.2:+34340043 MS.gene81513:CDS
GCAGGATGGACGGAGGGTTA+TGG 0.411732 2.2:+34340189 MS.gene81513:CDS
CCAACAAATTCACTAATAGT+TGG 0.411985 2.2:-34340321 None:intergenic
GCGACTCGGTCGTTAATAAA+GGG 0.419002 2.2:+34339994 MS.gene81513:CDS
TATTTAATTGTTCAGGTGGC+AGG 0.438998 2.2:+34340171 MS.gene81513:intron
GCGAGCTTTGGTACTATTCA+AGG 0.441740 2.2:+34340275 MS.gene81513:CDS
ACTTGTTAAATCAGGGGTTC+GGG 0.495035 2.2:+34339820 MS.gene81513:CDS
AGTCTGTTGCAGTCAATCTC+AGG 0.506008 2.2:-34340029 None:intergenic
GGTACTATTCAAGGCATTTG+TGG 0.519304 2.2:+34340284 MS.gene81513:CDS
ACCCTACAATCTCTATGTTA+GGG 0.521246 2.2:+34339795 None:intergenic
TCGGTCGTTAATAAAGGGAT+TGG 0.528670 2.2:+34339999 MS.gene81513:CDS
CTATTCAAGGCATTTGTGGA+AGG 0.529889 2.2:+34340288 MS.gene81513:CDS
CTCGTATAGAGTTTGGTATG+AGG 0.542677 2.2:+34340050 MS.gene81513:CDS
TAGGGCCACTTGTTAAATCA+GGG 0.543896 2.2:+34339813 MS.gene81513:CDS
CGAACCCCTGATTTAACAAG+TGG 0.550763 2.2:-34339818 None:intergenic
AGTTTGGTATGAGGGTAGCC+AGG 0.551338 2.2:+34340059 MS.gene81513:CDS
TTATCATTTGCAACAATAAG+GGG 0.561572 2.2:+34340219 MS.gene81513:CDS
TGTTCAGGTGGCAGGATGGA+CGG 0.564756 2.2:+34340179 MS.gene81513:intron
TCGTATAGAGTTTGGTATGA+GGG 0.567116 2.2:+34340051 MS.gene81513:CDS
TATTCAAGGCATTTGTGGAA+GGG 0.571085 2.2:+34340289 MS.gene81513:CDS
TCAGGTGGCAGGATGGACGG+AGG 0.589632 2.2:+34340182 MS.gene81513:intron
CAGGTGGCAGGATGGACGGA+GGG 0.591184 2.2:+34340183 MS.gene81513:intron
AATAGTACCAAAGCTCGCGC+AGG 0.591962 2.2:-34340270 None:intergenic
GTTAATAAAGGGATTGGCGA+AGG 0.601409 2.2:+34340005 MS.gene81513:CDS
AGGGCCACTTGTTAAATCAG+GGG 0.612046 2.2:+34339814 MS.gene81513:CDS
TAATTGTTCAGGTGGCAGGA+TGG 0.638374 2.2:+34340175 MS.gene81513:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGATATTTAATTGTTC+AGG + chr2.2:34340164-34340183 MS.gene81513:intron 15.0%
!! ATGTATATAAGTAACTAAGT+TGG - chr2.2:34339879-34339898 None:intergenic 20.0%
!! TATCCTATTAAATATTTACC+TGG - chr2.2:34340080-34340099 None:intergenic 20.0%
!! TTTATCATTTGCAACAATAA+GGG + chr2.2:34340218-34340237 MS.gene81513:CDS 20.0%
!!! TTTTATCATTTGCAACAATA+AGG + chr2.2:34340217-34340236 MS.gene81513:CDS 20.0%
! GAGAAAAAAACAAAAAGCTT+TGG - chr2.2:34339936-34339955 None:intergenic 25.0%
! TAGCCAGGTAAATATTTAAT+AGG + chr2.2:34340074-34340093 MS.gene81513:intron 25.0%
! TTATCATTTGCAACAATAAG+GGG + chr2.2:34340219-34340238 MS.gene81513:CDS 25.0%
! TTGATATTTAATTGTTCAGG+TGG + chr2.2:34340167-34340186 MS.gene81513:intron 25.0%
!! ATATGACATTGATTGATAGT+AGG - chr2.2:34339908-34339927 None:intergenic 25.0%
!! TATATAAGTAACTAAGTTGG+AGG - chr2.2:34339876-34339895 None:intergenic 25.0%
CCAACAAATTCACTAATAGT+TGG - chr2.2:34340324-34340343 None:intergenic 30.0%
CCAACTATTAGTGAATTTGT+TGG + chr2.2:34340321-34340340 MS.gene81513:CDS 30.0%
TATTTAATTGTTCAGGTGGC+AGG + chr2.2:34340171-34340190 MS.gene81513:intron 35.0%
TCGTATAGAGTTTGGTATGA+GGG + chr2.2:34340051-34340070 MS.gene81513:CDS 35.0%
! TATTCAAGGCATTTGTGGAA+GGG + chr2.2:34340289-34340308 MS.gene81513:CDS 35.0%
!!! AAATACCCTTTTTTGCGACT+CGG + chr2.2:34339980-34339999 MS.gene81513:CDS 35.0%
CAACAGACTCGTATAGAGTT+TGG + chr2.2:34340043-34340062 MS.gene81513:CDS 40.0%
CTCGTATAGAGTTTGGTATG+AGG + chr2.2:34340050-34340069 MS.gene81513:CDS 40.0%
TCGGTCGTTAATAAAGGGAT+TGG + chr2.2:34339999-34340018 MS.gene81513:CDS 40.0%
! ACTTGTTAAATCAGGGGTTC+GGG + chr2.2:34339820-34339839 MS.gene81513:CDS 40.0%
! CACTTGTTAAATCAGGGGTT+CGG + chr2.2:34339819-34339838 MS.gene81513:CDS 40.0%
! CTATTCAAGGCATTTGTGGA+AGG + chr2.2:34340288-34340307 MS.gene81513:CDS 40.0%
! GGTACTATTCAAGGCATTTG+TGG + chr2.2:34340284-34340303 MS.gene81513:CDS 40.0%
! GTTAATAAAGGGATTGGCGA+AGG + chr2.2:34340005-34340024 MS.gene81513:CDS 40.0%
! TAGGGCCACTTGTTAAATCA+GGG + chr2.2:34339813-34339832 MS.gene81513:CDS 40.0%
! TTAGGGCCACTTGTTAAATC+AGG + chr2.2:34339812-34339831 MS.gene81513:CDS 40.0%
!!! TTGTTTTTTTCTCCCTGCAG+TGG + chr2.2:34339943-34339962 MS.gene81513:intron 40.0%
AACGACCGAGTCGCAAAAAA+GGG - chr2.2:34339988-34340007 None:intergenic 45.0%
AGTCTGTTGCAGTCAATCTC+AGG - chr2.2:34340032-34340051 None:intergenic 45.0%
CGAACCCCTGATTTAACAAG+TGG - chr2.2:34339821-34339840 None:intergenic 45.0%
TAACGACCGAGTCGCAAAAA+AGG - chr2.2:34339989-34340008 None:intergenic 45.0%
TAATTGTTCAGGTGGCAGGA+TGG + chr2.2:34340175-34340194 MS.gene81513:intron 45.0%
! AGGGCCACTTGTTAAATCAG+GGG + chr2.2:34339814-34339833 MS.gene81513:CDS 45.0%
! GCGAGCTTTGGTACTATTCA+AGG + chr2.2:34340275-34340294 MS.gene81513:CDS 45.0%
!! GCGACTCGGTCGTTAATAAA+GGG + chr2.2:34339994-34340013 MS.gene81513:CDS 45.0%
!! TGCGACTCGGTCGTTAATAA+AGG + chr2.2:34339993-34340012 MS.gene81513:CDS 45.0%
AATAGTACCAAAGCTCGCGC+AGG - chr2.2:34340273-34340292 None:intergenic 50.0%
AGTTTGGTATGAGGGTAGCC+AGG + chr2.2:34340059-34340078 MS.gene81513:CDS 50.0%
AGAGTCCTGATCTCCACTGC+AGG - chr2.2:34339959-34339978 None:intergenic 55.0%
GAGTCCTGATCTCCACTGCA+GGG - chr2.2:34339958-34339977 None:intergenic 55.0%
TGTTCAGGTGGCAGGATGGA+CGG + chr2.2:34340179-34340198 MS.gene81513:intron 55.0%
TTCTCCCTGCAGTGGAGATC+AGG + chr2.2:34339951-34339970 MS.gene81513:intron 55.0%
!! GGGTTCGGGTTCTAGCTTAC+AGG + chr2.2:34339834-34339853 MS.gene81513:CDS 55.0%
GCAGGATGGACGGAGGGTTA+TGG + chr2.2:34340189-34340208 MS.gene81513:CDS 60.0%
GCTCGCGCAGGCTGAGAAAA+TGG - chr2.2:34340261-34340280 None:intergenic 60.0%
TTCTCAGCCTGCGCGAGCTT+TGG + chr2.2:34340263-34340282 MS.gene81513:CDS 60.0%
CAGGTGGCAGGATGGACGGA+GGG + chr2.2:34340183-34340202 MS.gene81513:intron 65.0%
TCAGGTGGCAGGATGGACGG+AGG + chr2.2:34340182-34340201 MS.gene81513:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 34339809 34340368 34339809 ID=MS.gene81513
chr2.2 mRNA 34339809 34340368 34339809 ID=MS.gene81513.t1;Parent=MS.gene81513
chr2.2 exon 34339809 34339855 34339809 ID=MS.gene81513.t1.exon1;Parent=MS.gene81513.t1
chr2.2 CDS 34339809 34339855 34339809 ID=cds.MS.gene81513.t1;Parent=MS.gene81513.t1
chr2.2 exon 34339963 34340080 34339963 ID=MS.gene81513.t1.exon2;Parent=MS.gene81513.t1
chr2.2 CDS 34339963 34340080 34339963 ID=cds.MS.gene81513.t1;Parent=MS.gene81513.t1
chr2.2 exon 34340186 34340368 34340186 ID=MS.gene81513.t1.exon3;Parent=MS.gene81513.t1
chr2.2 CDS 34340186 34340368 34340186 ID=cds.MS.gene81513.t1;Parent=MS.gene81513.t1
Gene Sequence

>MS.gene81513

ATGTTAGGGCCACTTGTTAAATCAGGGGTTCGGGTTCTAGCTTACAGGTAACAATCTGTGTTTTCCTCCAACTTAGTTACTTATATACATTGCATTCCTACTATCAATCAATGTCATATACTAACCAAAGCTTTTTGTTTTTTTCTCCCTGCAGTGGAGATCAGGACTCTGAAATACCCTTTTTTGCGACTCGGTCGTTAATAAAGGGATTGGCGAAGGACCTGAGATTGACTGCAACAGACTCGTATAGAGTTTGGTATGAGGGTAGCCAGGTAAATATTTAATAGGATATGTTGCATCATTTTATTATATTCTAATCATATTATGTATCAATCATTTTATTAAAACTTACTTAATTTTGATATTTAATTGTTCAGGTGGCAGGATGGACGGAGGGTTATGGTGAGTTTTTATCATTTGCAACAATAAGGGGAGCAGCTCATGCTGCTCCATTTTCTCAGCCTGCGCGAGCTTTGGTACTATTCAAGGCATTTGTGGAAGGGAAGTCTCTTCCAACTATTAGTGAATTTGTTGGTAAACTTGATAGAACTGAACTGTAA
Protein sequence

>MS.gene81513.t1

MLGPLVKSGVRVLAYSGDQDSEIPFFATRSLIKGLAKDLRLTATDSYRVWYEGSQVAGWTEGYGEFLSFATIRGAAHAAPFSQPARALVLFKAFVEGKSLPTISEFVGKLDRTEL