Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81623.t1 | XP_029129215.1 | 31.8 | 431 | 212 | 20 | 61 | 481 | 59 | 417 | 4.60E-31 | 146 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81623.t1 | Q3EBM5 | 26.3 | 392 | 214 | 16 | 92 | 463 | 95 | 431 | 1.4e-12 | 75.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81623.t1 | A0A392MSZ3 | 59.8 | 122 | 40 | 5 | 1 | 117 | 1 | 118 | 4.0e-24 | 122.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057887 | MS.gene81623 | 0.805282 | 1.44E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81623.t1 | MTR_0036s0110 | 26.747 | 415 | 215 | 17 | 67 | 463 | 85 | 428 | 7.21e-17 | 83.2 |
| MS.gene81623.t1 | MTR_5g080890 | 26.944 | 360 | 202 | 15 | 60 | 404 | 70 | 383 | 3.90e-16 | 80.9 |
| MS.gene81623.t1 | MTR_2g059460 | 23.934 | 422 | 242 | 17 | 53 | 463 | 39 | 392 | 3.43e-15 | 77.8 |
| MS.gene81623.t1 | MTR_8g038280 | 27.246 | 345 | 197 | 14 | 67 | 398 | 77 | 380 | 8.82e-15 | 76.6 |
| MS.gene81623.t1 | MTR_0036s0070 | 25.240 | 416 | 229 | 19 | 55 | 463 | 72 | 412 | 9.35e-15 | 76.6 |
| MS.gene81623.t1 | MTR_6g088760 | 25.926 | 378 | 227 | 14 | 37 | 404 | 55 | 389 | 9.50e-15 | 77.0 |
| MS.gene81623.t1 | MTR_1g060750 | 30.290 | 241 | 130 | 11 | 225 | 463 | 158 | 362 | 2.36e-14 | 75.1 |
| MS.gene81623.t1 | MTR_2g105300 | 26.498 | 317 | 188 | 13 | 99 | 404 | 53 | 335 | 6.20e-14 | 73.6 |
| MS.gene81623.t1 | MTR_8g096990 | 24.874 | 398 | 228 | 18 | 36 | 414 | 54 | 399 | 2.08e-13 | 72.4 |
| MS.gene81623.t1 | MTR_0036s0050 | 25.287 | 435 | 214 | 18 | 55 | 463 | 72 | 421 | 2.91e-13 | 72.0 |
| MS.gene81623.t1 | MTR_0024s0040 | 25.891 | 421 | 229 | 20 | 70 | 475 | 54 | 406 | 5.73e-12 | 67.8 |
| MS.gene81623.t1 | MTR_2g059490 | 24.432 | 352 | 217 | 13 | 64 | 404 | 46 | 359 | 2.40e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81623.t1 | AT2G03200 | 25.767 | 326 | 187 | 13 | 97 | 404 | 122 | 410 | 2.12e-13 | 72.8 |
| MS.gene81623.t1 | AT2G35615 | 25.598 | 418 | 231 | 17 | 66 | 463 | 74 | 431 | 1.29e-11 | 67.0 |
| MS.gene81623.t1 | AT5G37540 | 24.802 | 379 | 227 | 17 | 33 | 393 | 37 | 375 | 5.17e-11 | 65.1 |
Find 84 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGGTCGGTGTGGAATTTA+AGG | 0.190319 | 5.1:+67387584 | MS.gene81623:CDS |
| GTGACTTTCAATCTTATAAA+AGG | 0.208727 | 5.1:+67388128 | MS.gene81623:CDS |
| ACTAAATCAAAAGGAATTTA+TGG | 0.220744 | 5.1:+67387315 | MS.gene81623:CDS |
| GAATGACCTTGTCCTGTTAA+AGG | 0.229571 | 5.1:-67387621 | None:intergenic |
| CACAACAACAACATCTCTTT+TGG | 0.242845 | 5.1:+67384920 | MS.gene81623:CDS |
| TTATTAGCTTTAGTGTTAAA+AGG | 0.255086 | 5.1:-67384808 | None:intergenic |
| GCTATGAGCAAGTTCACTTT+AGG | 0.261155 | 5.1:+67387564 | MS.gene81623:CDS |
| CCGCAATAGAAACTCTTCTT+AGG | 0.270787 | 5.1:-67387177 | None:intergenic |
| AGCGATCTCATATGGCTTTA+TGG | 0.283710 | 5.1:+67385094 | MS.gene81623:CDS |
| AGATTTATGCGAGTTTAGTA+TGG | 0.293858 | 5.1:+67387278 | MS.gene81623:CDS |
| CATCAAAGGCTACGTAACTA+TGG | 0.301401 | 5.1:+67388047 | MS.gene81623:CDS |
| ATTTCAGATTCAATGGTTAA+AGG | 0.303548 | 5.1:-67384974 | None:intergenic |
| AAGGTAATGATTATTGATTC+AGG | 0.310716 | 5.1:+67387744 | MS.gene81623:CDS |
| TAGGGCACAGATGGATTTCT+TGG | 0.326909 | 5.1:+67388106 | MS.gene81623:CDS |
| TGGAATGGCATATGTATCTT+TGG | 0.327787 | 5.1:-67385062 | None:intergenic |
| TTTATGGTCCAGCTAATCTT+TGG | 0.343745 | 5.1:+67387331 | MS.gene81623:CDS |
| CAGTTGAGCACTCCTTTAAC+AGG | 0.350092 | 5.1:+67387609 | MS.gene81623:CDS |
| ATGAGATCGCTTCCGGTGTC+TGG | 0.356075 | 5.1:-67385082 | None:intergenic |
| CTATGAGCAAGTTCACTTTA+GGG | 0.376353 | 5.1:+67387565 | MS.gene81623:CDS |
| AGCAATTATTTCAGATTCAA+TGG | 0.381469 | 5.1:-67384981 | None:intergenic |
| GCTCGATGTTTAAACCGTTT+AGG | 0.384979 | 5.1:-67384883 | None:intergenic |
| ATGTAAAGATCTAGCTTTGA+AGG | 0.385693 | 5.1:+67387209 | MS.gene81623:CDS |
| AAGAACAAACATTGAACATT+GGG | 0.386863 | 5.1:+67387370 | MS.gene81623:CDS |
| AAATAATTGCTCAACAGTTC+AGG | 0.397781 | 5.1:+67384993 | MS.gene81623:CDS |
| GGAGTTGTTGGACTTGGATC+CGG | 0.403303 | 5.1:+67387447 | MS.gene81623:CDS |
| AGCCAAGGAGTTGTTGGACT+TGG | 0.412091 | 5.1:+67387441 | MS.gene81623:CDS |
| GAGTTGTTGGACTTGGATCC+GGG | 0.414542 | 5.1:+67387448 | MS.gene81623:CDS |
| TCATGAGTGTCATCACTTAT+CGG | 0.415336 | 5.1:-67387714 | None:intergenic |
| TAAGCCCATTGAAGAATTAT+CGG | 0.419091 | 5.1:+67388181 | MS.gene81623:CDS |
| AAGCCATATGAGATCGCTTC+CGG | 0.423924 | 5.1:-67385089 | None:intergenic |
| GGAATGGCATATGTATCTTT+GGG | 0.435733 | 5.1:-67385061 | None:intergenic |
| AAAAGAATTAGATGGGAAAG+AGG | 0.438382 | 5.1:+67387824 | MS.gene81623:CDS |
| TGGTTAAAGGAGATGCATCT+AGG | 0.443848 | 5.1:-67384961 | None:intergenic |
| GCTAATACTCAAAACCTAAA+CGG | 0.446692 | 5.1:+67384869 | MS.gene81623:CDS |
| GAGGTAAAACCGCATATACT+TGG | 0.447459 | 5.1:+67388080 | MS.gene81623:CDS |
| TTCAGGTATCTGATGAAATT+CGG | 0.450569 | 5.1:+67385010 | MS.gene81623:CDS |
| ACACCGGAAGCGATCTCATA+TGG | 0.453558 | 5.1:+67385086 | MS.gene81623:CDS |
| GATCTAGCTTTGAAGGAAAC+CGG | 0.456796 | 5.1:+67387216 | MS.gene81623:CDS |
| ATACTTATACAGAATCCAAC+GGG | 0.457378 | 5.1:+67387973 | MS.gene81623:CDS |
| TTTGTAAACCAAAGATTAGC+TGG | 0.462352 | 5.1:-67387339 | None:intergenic |
| AAGGACCGATAATTCTTCAA+TGG | 0.466438 | 5.1:-67388186 | None:intergenic |
| AAAATTGACGATGGTGATCT+TGG | 0.470958 | 5.1:+67385037 | MS.gene81623:CDS |
| AGGACCGATAATTCTTCAAT+GGG | 0.473289 | 5.1:-67388185 | None:intergenic |
| AGCTTTAGTGTTAAAAGGAA+TGG | 0.477380 | 5.1:-67384803 | None:intergenic |
| TGACACTCATGAAGCTCATA+AGG | 0.484215 | 5.1:+67387725 | MS.gene81623:CDS |
| ATCCAAGTCCAACAACTCCT+TGG | 0.488974 | 5.1:-67387443 | None:intergenic |
| AAAGAATTAGATGGGAAAGA+GGG | 0.492739 | 5.1:+67387825 | MS.gene81623:CDS |
| CACAAGTGTTACGAGAAAGA+TGG | 0.496565 | 5.1:+67387867 | MS.gene81623:CDS |
| AAAGAACAAACATTGAACAT+TGG | 0.508509 | 5.1:+67387369 | MS.gene81623:CDS |
| GTAGACGGTACTAAATCAAA+AGG | 0.510645 | 5.1:+67387306 | MS.gene81623:CDS |
| GGGAAAGAGGGAGAAAAGAA+AGG | 0.514345 | 5.1:+67387837 | MS.gene81623:CDS |
| TATTAGCATCGGCAGGTGGT+TGG | 0.524260 | 5.1:-67384853 | None:intergenic |
| ACTTGGAAGTAGGGCACAGA+TGG | 0.526284 | 5.1:+67388097 | MS.gene81623:CDS |
| TCGTCTTTGCGACGAAATTG+TGG | 0.527289 | 5.1:-67387528 | None:intergenic |
| ACCGCATATACTTGGAAGTA+GGG | 0.527836 | 5.1:+67388088 | MS.gene81623:CDS |
| ATCGCTTCCGGTGTCTGGAA+TGG | 0.534464 | 5.1:-67385077 | None:intergenic |
| AGCAAGTTCACTTTAGGGGT+CGG | 0.538398 | 5.1:+67387570 | MS.gene81623:CDS |
| GATTTATGCGAGTTTAGTAT+GGG | 0.542770 | 5.1:+67387279 | MS.gene81623:CDS |
| GGTTAAAGGAGATGCATCTA+GGG | 0.544267 | 5.1:-67384960 | None:intergenic |
| ACAAGTGTTACGAGAAAGAT+GGG | 0.545256 | 5.1:+67387868 | MS.gene81623:CDS |
| ATCAAAGGCTACGTAACTAT+GGG | 0.546671 | 5.1:+67388048 | MS.gene81623:CDS |
| TATATATGCTTAACAGTGGA+AGG | 0.549698 | 5.1:+67388008 | MS.gene81623:CDS |
| ACACATATTCTTATTCTGAA+AGG | 0.569596 | 5.1:-67388205 | None:intergenic |
| TATGAGCAAGTTCACTTTAG+GGG | 0.570775 | 5.1:+67387566 | MS.gene81623:CDS |
| TTTAGTATGGGTTATGTAGA+CGG | 0.579434 | 5.1:+67387291 | MS.gene81623:CDS |
| CATCTTAAAAGTATTTCTGT+AGG | 0.587267 | 5.1:+67387669 | MS.gene81623:CDS |
| AACCGCATATACTTGGAAGT+AGG | 0.589708 | 5.1:+67388087 | MS.gene81623:CDS |
| AAAATGAAAAGTATCATCAA+AGG | 0.596410 | 5.1:+67388033 | MS.gene81623:CDS |
| AGCACTCCTTTAACAGGACA+AGG | 0.599401 | 5.1:+67387615 | MS.gene81623:CDS |
| TTCGGTGTTAAAATTGACGA+TGG | 0.612960 | 5.1:+67385028 | MS.gene81623:CDS |
| TGAGTATTAGCATCGGCAGG+TGG | 0.619606 | 5.1:-67384857 | None:intergenic |
| GCCCTACTTCCAAGTATATG+CGG | 0.624912 | 5.1:-67388089 | None:intergenic |
| TATACTTATACAGAATCCAA+CGG | 0.626260 | 5.1:+67387972 | MS.gene81623:CDS |
| AGTTGTTGGACTTGGATCCG+GGG | 0.631745 | 5.1:+67387449 | MS.gene81623:CDS |
| GTTCACTTTAGGGGTCGGTG+TGG | 0.641029 | 5.1:+67387575 | MS.gene81623:CDS |
| CCTAAGAAGAGTTTCTATTG+CGG | 0.643718 | 5.1:+67387177 | MS.gene81623:CDS |
| ACATATGCCATTCCAGACAC+CGG | 0.654784 | 5.1:+67385070 | MS.gene81623:CDS |
| ATTTATCAAAGATACCTCCC+CGG | 0.658270 | 5.1:-67387466 | None:intergenic |
| TAACTATGGGAAGTCATCAG+AGG | 0.667075 | 5.1:+67388061 | MS.gene81623:CDS |
| TGTTGGACTTGGATCCGGGG+AGG | 0.668693 | 5.1:+67387452 | MS.gene81623:CDS |
| ACATTATATATGCTTAACAG+TGG | 0.673012 | 5.1:+67388004 | MS.gene81623:CDS |
| AAGACTTGTGAATCTAACCA+AGG | 0.681574 | 5.1:+67385118 | MS.gene81623:CDS |
| TTATACAGAATCCAACGGGG+AGG | 0.732536 | 5.1:+67387977 | MS.gene81623:CDS |
| TACTTATACAGAATCCAACG+GGG | 0.814888 | 5.1:+67387974 | MS.gene81623:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTTTTAAATAAAT+AGG | - | chr5.1:67386719-67386738 | None:intergenic | 0.0% |
| !!! | TATATTTTTTTAAATAAATA+GGG | - | chr5.1:67386718-67386737 | None:intergenic | 0.0% |
| !! | CTAAAAAAAAATAAAAATCA+AGG | - | chr5.1:67385919-67385938 | None:intergenic | 10.0% |
| !! | GGATAAAATTTAAAAAAAAA+CGG | + | chr5.1:67386091-67386110 | MS.gene81623:intron | 10.0% |
| !! | TAAAAAATAATTAATGTAGT+TGG | - | chr5.1:67386686-67386705 | None:intergenic | 10.0% |
| !!! | ACAAAAATTGTTTTATAAAA+AGG | - | chr5.1:67386659-67386678 | None:intergenic | 10.0% |
| !!! | ATTTGTTTTTCTTATATTAA+AGG | + | chr5.1:67387084-67387103 | MS.gene81623:intron | 10.0% |
| !!! | CAAAAATTGTTTTATAAAAA+GGG | - | chr5.1:67386658-67386677 | None:intergenic | 10.0% |
| !! | AATCCAACATTAATTAAATT+TGG | + | chr5.1:67385207-67385226 | MS.gene81623:intron | 15.0% |
| !! | ATTGAAGATTATATGATATT+TGG | + | chr5.1:67386570-67386589 | MS.gene81623:intron | 15.0% |
| !! | GATTGAAATATTCATTTATT+TGG | + | chr5.1:67386130-67386149 | MS.gene81623:intron | 15.0% |
| !!! | AATTAATTTCTATGTTTTGA+CGG | + | chr5.1:67385644-67385663 | MS.gene81623:intron | 15.0% |
| !!! | TATAATTTTTGTGAAATGTA+TGG | + | chr5.1:67385382-67385401 | MS.gene81623:intron | 15.0% |
| !!! | TTTTTTTTAGAGGATAAATA+AGG | - | chr5.1:67386025-67386044 | None:intergenic | 15.0% |
| !! | AAAAATCAAGGTCATATAAT+TGG | - | chr5.1:67385907-67385926 | None:intergenic | 20.0% |
| !! | AAAGTAAATTAGATTTACCT+TGG | - | chr5.1:67385138-67385157 | None:intergenic | 20.0% |
| !! | AAAGTAGAAAAAGAATTAGA+TGG | + | chr5.1:67387816-67387835 | MS.gene81623:CDS | 20.0% |
| !! | AAGTAGAAAAAGAATTAGAT+GGG | + | chr5.1:67387817-67387836 | MS.gene81623:CDS | 20.0% |
| !! | AATTCCTCAATTAAAACATT+TGG | + | chr5.1:67386070-67386089 | MS.gene81623:intron | 20.0% |
| !! | ACCAAAATAACCATATATTT+AGG | + | chr5.1:67386929-67386948 | MS.gene81623:intron | 20.0% |
| !! | ACTAAATCAAAAGGAATTTA+TGG | + | chr5.1:67387315-67387334 | MS.gene81623:CDS | 20.0% |
| !! | CCAAAATAACCATATATTTA+GGG | + | chr5.1:67386930-67386949 | MS.gene81623:intron | 20.0% |
| !! | GTGATATAAATTAGATTAGA+TGG | + | chr5.1:67385867-67385886 | MS.gene81623:intron | 20.0% |
| !! | TATATGATATTTGGTTGATT+CGG | + | chr5.1:67386579-67386598 | MS.gene81623:intron | 20.0% |
| !! | TGACCAAATTTAATTAATGT+TGG | - | chr5.1:67385213-67385232 | None:intergenic | 20.0% |
| !! | TTATTTAGATTCACATGTAT+GGG | - | chr5.1:67385678-67385697 | None:intergenic | 20.0% |
| !! | TTTATTTAGATTCACATGTA+TGG | - | chr5.1:67385679-67385698 | None:intergenic | 20.0% |
| !! | TTTCTATCACATTGAAAAAA+AGG | + | chr5.1:67386339-67386358 | MS.gene81623:intron | 20.0% |
| !!! | AAAATGAAAAGTATCATCAA+AGG | + | chr5.1:67388033-67388052 | MS.gene81623:CDS | 20.0% |
| !!! | AAATTGTTCTTTTTAACCAT+TGG | + | chr5.1:67386293-67386312 | MS.gene81623:intron | 20.0% |
| !!! | ATAGAAAAATATGTGTCATT+AGG | + | chr5.1:67386165-67386184 | MS.gene81623:intron | 20.0% |
| !!! | ATTTTACCAAAATGATCATA+TGG | + | chr5.1:67386865-67386884 | MS.gene81623:intron | 20.0% |
| !!! | TAAGGGTTTTTTTTTTTTAG+AGG | - | chr5.1:67386035-67386054 | None:intergenic | 20.0% |
| !!! | TAGAAAAATATGTGTCATTA+GGG | + | chr5.1:67386166-67386185 | MS.gene81623:intron | 20.0% |
| !!! | TATTTTCAAAAATATGTACG+TGG | + | chr5.1:67385738-67385757 | MS.gene81623:intron | 20.0% |
| !!! | TGTTTTTCTTATATTAAAGG+TGG | + | chr5.1:67387087-67387106 | MS.gene81623:intron | 20.0% |
| !!! | TTATAATAAAGTGTCTTTTG+AGG | + | chr5.1:67388151-67388170 | MS.gene81623:CDS | 20.0% |
| !!! | TTATCCAAATGTTTTAATTG+AGG | - | chr5.1:67386077-67386096 | None:intergenic | 20.0% |
| !!! | TTATTAGCTTTAGTGTTAAA+AGG | - | chr5.1:67384811-67384830 | None:intergenic | 20.0% |
| ! | AAAGAACAAACATTGAACAT+TGG | + | chr5.1:67387369-67387388 | MS.gene81623:CDS | 25.0% |
| ! | AAATTAGATTAGATGGTACA+AGG | + | chr5.1:67385874-67385893 | MS.gene81623:intron | 25.0% |
| ! | AAGAACAAACATTGAACATT+GGG | + | chr5.1:67387370-67387389 | MS.gene81623:CDS | 25.0% |
| ! | AATAACCATATATTTAGGGA+CGG | + | chr5.1:67386934-67386953 | MS.gene81623:intron | 25.0% |
| ! | ACATTATATATGCTTAACAG+TGG | + | chr5.1:67388004-67388023 | MS.gene81623:CDS | 25.0% |
| ! | AGAATCAAAAACCAATAAGA+AGG | + | chr5.1:67385310-67385329 | MS.gene81623:intron | 25.0% |
| ! | AGCAATTATTTCAGATTCAA+TGG | - | chr5.1:67384984-67385003 | None:intergenic | 25.0% |
| ! | ATATAGATAGTTTCGAAAGT+TGG | + | chr5.1:67386408-67386427 | MS.gene81623:intron | 25.0% |
| ! | ATTTCAGATTCAATGGTTAA+AGG | - | chr5.1:67384977-67384996 | None:intergenic | 25.0% |
| ! | GTGACTTTCAATCTTATAAA+AGG | + | chr5.1:67388128-67388147 | MS.gene81623:CDS | 25.0% |
| ! | TAAAACAAAAGTGGATAGTA+GGG | + | chr5.1:67386493-67386512 | MS.gene81623:intron | 25.0% |
| ! | TATACTTATACAGAATCCAA+CGG | + | chr5.1:67387972-67387991 | MS.gene81623:CDS | 25.0% |
| ! | TATAGATAGTTTCGAAAGTT+GGG | + | chr5.1:67386409-67386428 | MS.gene81623:intron | 25.0% |
| ! | TTAAAACAAAAGTGGATAGT+AGG | + | chr5.1:67386492-67386511 | MS.gene81623:intron | 25.0% |
| ! | TTGATCCAAATTGATGTTAT+AGG | - | chr5.1:67385957-67385976 | None:intergenic | 25.0% |
| !! | AAGATACAATTTTCTCTCTA+TGG | + | chr5.1:67387023-67387042 | MS.gene81623:intron | 25.0% |
| !! | ATATGATATTTGGTTGATTC+GGG | + | chr5.1:67386580-67386599 | MS.gene81623:intron | 25.0% |
| !! | CCCTAAATATATGGTTATTT+TGG | - | chr5.1:67386933-67386952 | None:intergenic | 25.0% |
| !! | CTTTAAGAGAGAGTTAATAT+AGG | - | chr5.1:67386774-67386793 | None:intergenic | 25.0% |
| !! | TTAAATAAATAGGGGTATGT+TGG | - | chr5.1:67386709-67386728 | None:intergenic | 25.0% |
| !! | TTTTGGATGAAACTATTCTA+CGG | - | chr5.1:67385424-67385443 | None:intergenic | 25.0% |
| !!! | AAGGTAATGATTATTGATTC+AGG | + | chr5.1:67387744-67387763 | MS.gene81623:CDS | 25.0% |
| !!! | CATCTTAAAAGTATTTCTGT+AGG | + | chr5.1:67387669-67387688 | MS.gene81623:CDS | 25.0% |
| !!! | CTACAGAAATACTTTTAAGA+TGG | - | chr5.1:67387671-67387690 | None:intergenic | 25.0% |
| !!! | CTATCCACTTTTGTTTTAAT+CGG | - | chr5.1:67386491-67386510 | None:intergenic | 25.0% |
| !!! | GAGAATCTGAGTTTAATTTT+TGG | - | chr5.1:67385441-67385460 | None:intergenic | 25.0% |
| !!! | GATCATTTTGGTAAAATCAT+GGG | - | chr5.1:67386862-67386881 | None:intergenic | 25.0% |
| !!! | GGTTATTTTGGTTAAATCAT+AGG | - | chr5.1:67386921-67386940 | None:intergenic | 25.0% |
| !!! | TATCCACTTTTGTTTTAATC+GGG | - | chr5.1:67386490-67386509 | None:intergenic | 25.0% |
| !!! | TCTTTATCTTTTCTAGAATC+TGG | - | chr5.1:67387261-67387280 | None:intergenic | 25.0% |
| !!! | TGATCATTTTGGTAAAATCA+TGG | - | chr5.1:67386863-67386882 | None:intergenic | 25.0% |
| !!! | TGTTAAAAGGAATGGTTTTA+GGG | - | chr5.1:67384798-67384817 | None:intergenic | 25.0% |
| !!! | TTTTTCAATGTGATAGAAAG+TGG | - | chr5.1:67386338-67386357 | None:intergenic | 25.0% |
| AAAAGAATTAGATGGGAAAG+AGG | + | chr5.1:67387824-67387843 | MS.gene81623:CDS | 30.0% | |
| AAACCCGATTAAAACAAAAG+TGG | + | chr5.1:67386484-67386503 | MS.gene81623:intron | 30.0% | |
| AAAGAATTAGATGGGAAAGA+GGG | + | chr5.1:67387825-67387844 | MS.gene81623:CDS | 30.0% | |
| AAATAATTGCTCAACAGTTC+AGG | + | chr5.1:67384993-67385012 | MS.gene81623:CDS | 30.0% | |
| AACCAATAAGAAGGTTGAAT+TGG | + | chr5.1:67385319-67385338 | MS.gene81623:intron | 30.0% | |
| AGATTTATGCGAGTTTAGTA+TGG | + | chr5.1:67387278-67387297 | MS.gene81623:CDS | 30.0% | |
| ATACTTATACAGAATCCAAC+GGG | + | chr5.1:67387973-67387992 | MS.gene81623:CDS | 30.0% | |
| CAAATTGATGTTATAGGTCA+AGG | - | chr5.1:67385951-67385970 | None:intergenic | 30.0% | |
| CTTGACCTATAACATCAATT+TGG | + | chr5.1:67385949-67385968 | MS.gene81623:intron | 30.0% | |
| GATTTATGCGAGTTTAGTAT+GGG | + | chr5.1:67387279-67387298 | MS.gene81623:CDS | 30.0% | |
| GCTAATACTCAAAACCTAAA+CGG | + | chr5.1:67384869-67384888 | MS.gene81623:CDS | 30.0% | |
| TAAGCCCATTGAAGAATTAT+CGG | + | chr5.1:67388181-67388200 | MS.gene81623:CDS | 30.0% | |
| TACCAAAATGATCATATGGA+CGG | + | chr5.1:67386869-67386888 | MS.gene81623:intron | 30.0% | |
| TACCAATTCAACCTTCTTAT+TGG | - | chr5.1:67385324-67385343 | None:intergenic | 30.0% | |
| TATATATGCTTAACAGTGGA+AGG | + | chr5.1:67388008-67388027 | MS.gene81623:CDS | 30.0% | |
| TTCAAAGTGAAAGTTATTGC+AGG | + | chr5.1:67385845-67385864 | MS.gene81623:intron | 30.0% | |
| TTCAGGTATCTGATGAAATT+CGG | + | chr5.1:67385010-67385029 | MS.gene81623:CDS | 30.0% | |
| TTTGGATGAAACTATTCTAC+GGG | - | chr5.1:67385423-67385442 | None:intergenic | 30.0% | |
| TTTGTAAACCAAAGATTAGC+TGG | - | chr5.1:67387342-67387361 | None:intergenic | 30.0% | |
| ! | AGCTTTAGTGTTAAAAGGAA+TGG | - | chr5.1:67384806-67384825 | None:intergenic | 30.0% |
| ! | GTGTTAAAAGGAATGGTTTT+AGG | - | chr5.1:67384799-67384818 | None:intergenic | 30.0% |
| ! | TTTAGTATGGGTTATGTAGA+CGG | + | chr5.1:67387291-67387310 | MS.gene81623:CDS | 30.0% |
| !! | AGACAAAAATTGAGTTGAAG+AGG | + | chr5.1:67387931-67387950 | MS.gene81623:CDS | 30.0% |
| !! | ATGTAAAGATCTAGCTTTGA+AGG | + | chr5.1:67387209-67387228 | MS.gene81623:CDS | 30.0% |
| !! | GACAAAAATTGAGTTGAAGA+GGG | + | chr5.1:67387932-67387951 | MS.gene81623:CDS | 30.0% |
| !!! | CGCTATATTGTCACTTTTAT+AGG | + | chr5.1:67385702-67385721 | MS.gene81623:intron | 30.0% |
| !!! | TAGGTTTTGAGTATTAGCAT+CGG | - | chr5.1:67384867-67384886 | None:intergenic | 30.0% |
| AAAATTGACGATGGTGATCT+TGG | + | chr5.1:67385037-67385056 | MS.gene81623:CDS | 35.0% | |
| AAGACTTGTGAATCTAACCA+AGG | + | chr5.1:67385118-67385137 | MS.gene81623:CDS | 35.0% | |
| AAGGACCGATAATTCTTCAA+TGG | - | chr5.1:67388189-67388208 | None:intergenic | 35.0% | |
| ACAAGTGTTACGAGAAAGAT+GGG | + | chr5.1:67387868-67387887 | MS.gene81623:CDS | 35.0% | |
| AGGACCGATAATTCTTCAAT+GGG | - | chr5.1:67388188-67388207 | None:intergenic | 35.0% | |
| AGTGATTAATAAGCTCCAGT+AGG | - | chr5.1:67385481-67385500 | None:intergenic | 35.0% | |
| ATCAAAGGCTACGTAACTAT+GGG | + | chr5.1:67388048-67388067 | MS.gene81623:CDS | 35.0% | |
| ATTTATCAAAGATACCTCCC+CGG | - | chr5.1:67387469-67387488 | None:intergenic | 35.0% | |
| CCTAAGAAGAGTTTCTATTG+CGG | + | chr5.1:67387177-67387196 | MS.gene81623:CDS | 35.0% | |
| CTATGAGCAAGTTCACTTTA+GGG | + | chr5.1:67387565-67387584 | MS.gene81623:CDS | 35.0% | |
| GGAATGGCATATGTATCTTT+GGG | - | chr5.1:67385064-67385083 | None:intergenic | 35.0% | |
| GTAGACGGTACTAAATCAAA+AGG | + | chr5.1:67387306-67387325 | MS.gene81623:CDS | 35.0% | |
| TACATCCGTCCCTAAATATA+TGG | - | chr5.1:67386942-67386961 | None:intergenic | 35.0% | |
| TACTTATACAGAATCCAACG+GGG | + | chr5.1:67387974-67387993 | MS.gene81623:CDS | 35.0% | |
| TATGAGCAAGTTCACTTTAG+GGG | + | chr5.1:67387566-67387585 | MS.gene81623:CDS | 35.0% | |
| TCAATGTGATAGAAAGTGGT+TGG | - | chr5.1:67386334-67386353 | None:intergenic | 35.0% | |
| TCATGAGTGTCATCACTTAT+CGG | - | chr5.1:67387717-67387736 | None:intergenic | 35.0% | |
| TGGAATGGCATATGTATCTT+TGG | - | chr5.1:67385065-67385084 | None:intergenic | 35.0% | |
| TTGGTAAAATCATGGGAATG+AGG | - | chr5.1:67386855-67386874 | None:intergenic | 35.0% | |
| TTTATGGTCCAGCTAATCTT+TGG | + | chr5.1:67387331-67387350 | MS.gene81623:CDS | 35.0% | |
| ! | AAACAACTGATTCATCCTAC+TGG | + | chr5.1:67385463-67385482 | MS.gene81623:intron | 35.0% |
| ! | ATCATCTTTCTCTTTTGTGC+TGG | - | chr5.1:67387409-67387428 | None:intergenic | 35.0% |
| ! | CACAACAACAACATCTCTTT+TGG | + | chr5.1:67384920-67384939 | MS.gene81623:CDS | 35.0% |
| !! | ACATTCTGCAGTTTTGATAC+CGG | - | chr5.1:67387238-67387257 | None:intergenic | 35.0% |
| !! | TTCGGTGTTAAAATTGACGA+TGG | + | chr5.1:67385028-67385047 | MS.gene81623:CDS | 35.0% |
| AACCGCATATACTTGGAAGT+AGG | + | chr5.1:67388087-67388106 | MS.gene81623:CDS | 40.0% | |
| ACCGCATATACTTGGAAGTA+GGG | + | chr5.1:67388088-67388107 | MS.gene81623:CDS | 40.0% | |
| CACAAGTGTTACGAGAAAGA+TGG | + | chr5.1:67387867-67387886 | MS.gene81623:CDS | 40.0% | |
| CATCAAAGGCTACGTAACTA+TGG | + | chr5.1:67388047-67388066 | MS.gene81623:CDS | 40.0% | |
| CCGCAATAGAAACTCTTCTT+AGG | - | chr5.1:67387180-67387199 | None:intergenic | 40.0% | |
| GAATGACCTTGTCCTGTTAA+AGG | - | chr5.1:67387624-67387643 | None:intergenic | 40.0% | |
| GAGCATCTTATTGTCTCCAA+TGG | - | chr5.1:67386312-67386331 | None:intergenic | 40.0% | |
| GAGGTAAAACCGCATATACT+TGG | + | chr5.1:67388080-67388099 | MS.gene81623:CDS | 40.0% | |
| GATGAAGAACCAAAAAGCCA+AGG | + | chr5.1:67387426-67387445 | MS.gene81623:CDS | 40.0% | |
| GCTATGAGCAAGTTCACTTT+AGG | + | chr5.1:67387564-67387583 | MS.gene81623:CDS | 40.0% | |
| GCTCGATGTTTAAACCGTTT+AGG | - | chr5.1:67384886-67384905 | None:intergenic | 40.0% | |
| GGTTAAAGGAGATGCATCTA+GGG | - | chr5.1:67384963-67384982 | None:intergenic | 40.0% | |
| TAACTATGGGAAGTCATCAG+AGG | + | chr5.1:67388061-67388080 | MS.gene81623:CDS | 40.0% | |
| TGACACTCATGAAGCTCATA+AGG | + | chr5.1:67387725-67387744 | MS.gene81623:CDS | 40.0% | |
| TGGTTAAAGGAGATGCATCT+AGG | - | chr5.1:67384964-67384983 | None:intergenic | 40.0% | |
| TGTACGTGGCGTGATTTAAA+CGG | + | chr5.1:67385752-67385771 | MS.gene81623:intron | 40.0% | |
| TGTCTTAATCGTAAGTGCAC+AGG | - | chr5.1:67386983-67387002 | None:intergenic | 40.0% | |
| TTGCTTGCCCAATACATAGT+AGG | + | chr5.1:67386437-67386456 | MS.gene81623:intron | 40.0% | |
| ! | AGCGATCTCATATGGCTTTA+TGG | + | chr5.1:67385094-67385113 | MS.gene81623:CDS | 40.0% |
| ! | ATAATGTTTTTCCTCCCCGT+TGG | - | chr5.1:67387991-67388010 | None:intergenic | 40.0% |
| ! | CTCCGTCCATATGATCATTT+TGG | - | chr5.1:67386874-67386893 | None:intergenic | 40.0% |
| !! | GATCTAGCTTTGAAGGAAAC+CGG | + | chr5.1:67387216-67387235 | MS.gene81623:CDS | 40.0% |
| !! | TCTTTCTCTTTTGTGCTGGT+TGG | - | chr5.1:67387405-67387424 | None:intergenic | 40.0% |
| !!! | TTTTGAGTATTAGCATCGGC+AGG | - | chr5.1:67384863-67384882 | None:intergenic | 40.0% |
| AAGCCATATGAGATCGCTTC+CGG | - | chr5.1:67385092-67385111 | None:intergenic | 45.0% | |
| ACATATGCCATTCCAGACAC+CGG | + | chr5.1:67385070-67385089 | MS.gene81623:CDS | 45.0% | |
| AGCACTCCTTTAACAGGACA+AGG | + | chr5.1:67387615-67387634 | MS.gene81623:CDS | 45.0% | |
| ATCCAAGTCCAACAACTCCT+TGG | - | chr5.1:67387446-67387465 | None:intergenic | 45.0% | |
| CAGTTGAGCACTCCTTTAAC+AGG | + | chr5.1:67387609-67387628 | MS.gene81623:CDS | 45.0% | |
| CCAAAAAGCCAAGGAGTTGT+TGG | + | chr5.1:67387435-67387454 | MS.gene81623:CDS | 45.0% | |
| CTTGCCCAATACATAGTAGG+AGG | + | chr5.1:67386440-67386459 | MS.gene81623:intron | 45.0% | |
| GATTAGATGGTACAAGGTGC+TGG | + | chr5.1:67385880-67385899 | MS.gene81623:intron | 45.0% | |
| GCCACCTCCTACTATGTATT+GGG | - | chr5.1:67386447-67386466 | None:intergenic | 45.0% | |
| GCCCTACTTCCAAGTATATG+CGG | - | chr5.1:67388092-67388111 | None:intergenic | 45.0% | |
| GGGAAAGAGGGAGAAAAGAA+AGG | + | chr5.1:67387837-67387856 | MS.gene81623:CDS | 45.0% | |
| TCGTCTTTGCGACGAAATTG+TGG | - | chr5.1:67387531-67387550 | None:intergenic | 45.0% | |
| TGCCACCTCCTACTATGTAT+TGG | - | chr5.1:67386448-67386467 | None:intergenic | 45.0% | |
| TTATACAGAATCCAACGGGG+AGG | + | chr5.1:67387977-67387996 | MS.gene81623:CDS | 45.0% | |
| ! | AGCAAGTTCACTTTAGGGGT+CGG | + | chr5.1:67387570-67387589 | MS.gene81623:CDS | 45.0% |
| ! | TAGGGCACAGATGGATTTCT+TGG | + | chr5.1:67388106-67388125 | MS.gene81623:CDS | 45.0% |
| !! | CCAACAACTCCTTGGCTTTT+TGG | - | chr5.1:67387438-67387457 | None:intergenic | 45.0% |
| !!! | GTCGTGAGCTTTTTTTTCGC+TGG | - | chr5.1:67386265-67386284 | None:intergenic | 45.0% |
| !! | ATTGAAAATTATTATAAATA+AGG | - | chr5.1:67386053-67386072 | None:intergenic | 5.0% |
| !! | TTGAAAATTATTATAAATAA+GGG | - | chr5.1:67386052-67386071 | None:intergenic | 5.0% |
| !!! | ATATTTTTTTAAATAAATAG+GGG | - | chr5.1:67386717-67386736 | None:intergenic | 5.0% |
| !!! | ATTGTTTTATTTTATTTTTA+CGG | - | chr5.1:67386390-67386409 | None:intergenic | 5.0% |
| ACACCGGAAGCGATCTCATA+TGG | + | chr5.1:67385086-67385105 | MS.gene81623:CDS | 50.0% | |
| ACTTGGAAGTAGGGCACAGA+TGG | + | chr5.1:67388097-67388116 | MS.gene81623:CDS | 50.0% | |
| AGCCAAGGAGTTGTTGGACT+TGG | + | chr5.1:67387441-67387460 | MS.gene81623:CDS | 50.0% | |
| AGGGGTCGGTGTGGAATTTA+AGG | + | chr5.1:67387584-67387603 | MS.gene81623:CDS | 50.0% | |
| AGTTGTTGGACTTGGATCCG+GGG | + | chr5.1:67387449-67387468 | MS.gene81623:CDS | 50.0% | |
| GAGTTGTTGGACTTGGATCC+GGG | + | chr5.1:67387448-67387467 | MS.gene81623:CDS | 50.0% | |
| GCCCAATACATAGTAGGAGG+TGG | + | chr5.1:67386443-67386462 | MS.gene81623:intron | 50.0% | |
| GGAGTTGTTGGACTTGGATC+CGG | + | chr5.1:67387447-67387466 | MS.gene81623:CDS | 50.0% | |
| !! | TATTAGCATCGGCAGGTGGT+TGG | - | chr5.1:67384856-67384875 | None:intergenic | 50.0% |
| !! | TGAGTATTAGCATCGGCAGG+TGG | - | chr5.1:67384860-67384879 | None:intergenic | 50.0% |
| ATCGCTTCCGGTGTCTGGAA+TGG | - | chr5.1:67385080-67385099 | None:intergenic | 55.0% | |
| ATGAGATCGCTTCCGGTGTC+TGG | - | chr5.1:67385085-67385104 | None:intergenic | 55.0% | |
| ! | GTTCACTTTAGGGGTCGGTG+TGG | + | chr5.1:67387575-67387594 | MS.gene81623:CDS | 55.0% |
| TGTTGGACTTGGATCCGGGG+AGG | + | chr5.1:67387452-67387471 | MS.gene81623:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 67384788 | 67388217 | 67384788 | ID=MS.gene81623 |
| chr5.1 | mRNA | 67384788 | 67388217 | 67384788 | ID=MS.gene81623.t1;Parent=MS.gene81623 |
| chr5.1 | exon | 67384788 | 67385139 | 67384788 | ID=MS.gene81623.t1.exon1;Parent=MS.gene81623.t1 |
| chr5.1 | CDS | 67384788 | 67385139 | 67384788 | ID=cds.MS.gene81623.t1;Parent=MS.gene81623.t1 |
| chr5.1 | exon | 67387106 | 67388217 | 67387106 | ID=MS.gene81623.t1.exon2;Parent=MS.gene81623.t1 |
| chr5.1 | CDS | 67387106 | 67388217 | 67387106 | ID=cds.MS.gene81623.t1;Parent=MS.gene81623.t1 |
| Gene Sequence |
| Protein sequence |
