Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81670.t1 | XP_003616838.2 | 74.4 | 587 | 34 | 1 | 1 | 471 | 33 | 619 | 4.10E-226 | 793.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81670.t1 | Q9M219 | 34.7 | 144 | 93 | 1 | 75 | 218 | 36 | 178 | 5.2e-20 | 100.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81670.t1 | G7K7G6 | 74.4 | 587 | 34 | 1 | 1 | 471 | 1 | 587 | 3.0e-226 | 793.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene81670.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051064 | MS.gene81670 | 0.810044 | 1.40E-50 | -1.69E-46 |
| MS.gene056296 | MS.gene81670 | 0.806873 | 6.66E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81670.t1 | MTR_5g084810 | 94.981 | 259 | 13 | 0 | 213 | 471 | 329 | 587 | 2.34e-176 | 507 |
| MS.gene81670.t1 | MTR_5g084810 | 95.305 | 213 | 10 | 0 | 1 | 213 | 1 | 213 | 1.60e-137 | 408 |
| MS.gene81670.t1 | MTR_7g093000 | 32.937 | 252 | 167 | 2 | 213 | 463 | 313 | 563 | 2.20e-38 | 147 |
| MS.gene81670.t1 | MTR_7g093000 | 46.711 | 152 | 80 | 1 | 63 | 213 | 39 | 190 | 4.69e-36 | 140 |
| MS.gene81670.t1 | MTR_8g005155 | 41.447 | 152 | 80 | 3 | 48 | 196 | 18 | 163 | 1.40e-24 | 107 |
| MS.gene81670.t1 | MTR_8g005155 | 23.984 | 246 | 176 | 4 | 224 | 459 | 308 | 552 | 1.15e-18 | 89.4 |
| MS.gene81670.t1 | MTR_7g080620 | 25.191 | 262 | 175 | 7 | 213 | 459 | 317 | 572 | 6.01e-19 | 90.5 |
| MS.gene81670.t1 | MTR_7g080620 | 35.948 | 153 | 96 | 2 | 46 | 197 | 30 | 181 | 1.97e-18 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81670.t1 | AT4G19650 | 45.490 | 255 | 138 | 1 | 213 | 467 | 339 | 592 | 2.37e-68 | 229 |
| MS.gene81670.t1 | AT4G19650 | 36.196 | 326 | 157 | 11 | 68 | 386 | 79 | 360 | 7.24e-47 | 171 |
| MS.gene81670.t1 | AT4G19650 | 45.490 | 255 | 138 | 1 | 213 | 467 | 322 | 575 | 3.21e-68 | 228 |
| MS.gene81670.t1 | AT4G19650 | 33.232 | 328 | 166 | 12 | 68 | 386 | 60 | 343 | 2.68e-35 | 138 |
| MS.gene81670.t1 | AT5G06810 | 28.029 | 553 | 282 | 8 | 29 | 465 | 29 | 581 | 2.69e-59 | 205 |
| MS.gene81670.t1 | AT5G45113 | 42.412 | 257 | 142 | 2 | 213 | 467 | 162 | 414 | 1.30e-58 | 199 |
| MS.gene81670.t1 | AT5G45113 | 56.522 | 46 | 20 | 0 | 168 | 213 | 1 | 46 | 4.95e-11 | 65.1 |
| MS.gene81670.t1 | AT5G06811 | 34.959 | 246 | 159 | 1 | 221 | 465 | 332 | 577 | 8.41e-37 | 143 |
| MS.gene81670.t1 | AT5G06811 | 32.740 | 281 | 158 | 6 | 22 | 285 | 24 | 290 | 1.97e-33 | 133 |
| MS.gene81670.t1 | AT3G60400 | 32.961 | 179 | 109 | 4 | 42 | 218 | 9 | 178 | 6.07e-22 | 99.4 |
| MS.gene81670.t1 | AT3G60400 | 24.409 | 254 | 180 | 6 | 227 | 469 | 303 | 555 | 3.43e-16 | 81.6 |
| MS.gene81670.t1 | AT1G74120 | 25.311 | 241 | 151 | 6 | 231 | 463 | 186 | 405 | 3.45e-11 | 65.5 |
Find 75 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAGAAAGAGCGGGAATT+TGG | 0.207920 | 5.1:+66714385 | None:intergenic |
| TTGAGCAAACATTCGATAAA+AGG | 0.208563 | 5.1:-66713445 | MS.gene81670:CDS |
| TTGTGACCCGCTTATTAAAT+TGG | 0.211062 | 5.1:-66713293 | MS.gene81670:CDS |
| AAAAGGTTCAAATTCGTTAA+TGG | 0.216359 | 5.1:+66714158 | None:intergenic |
| ATTTCAAGATTATGAAGATT+TGG | 0.259240 | 5.1:-66713938 | MS.gene81670:CDS |
| CTTGCTGAAACTAGGGTATA+TGG | 0.266036 | 5.1:-66713257 | MS.gene81670:CDS |
| TTTGAATTACATTTCTCTTC+AGG | 0.267697 | 5.1:+66713089 | None:intergenic |
| ATTCTGCATAAATCAGCTTT+TGG | 0.277612 | 5.1:+66713391 | None:intergenic |
| CTCTTCAGGATTAGAATCTT+AGG | 0.284996 | 5.1:+66713103 | None:intergenic |
| TGCCAGATTGTTGGACCTTC+AGG | 0.287973 | 5.1:+66712851 | None:intergenic |
| TTTCAAGATTATGAAGATTT+GGG | 0.302755 | 5.1:-66713937 | MS.gene81670:intron |
| TCCATTGGAGCTTATTAGTT+TGG | 0.304432 | 5.1:-66713356 | MS.gene81670:CDS |
| AAAGGTTCAAATTCGTTAAT+GGG | 0.316048 | 5.1:+66714159 | None:intergenic |
| GTGGCGCGTTTGATGTAAAT+TGG | 0.317940 | 5.1:+66714363 | None:intergenic |
| AGGAATTAATCACACGGAAT+TGG | 0.320142 | 5.1:-66714124 | MS.gene81670:CDS |
| ATCGTCAGGGATGTTGATTT+TGG | 0.327979 | 5.1:+66714224 | None:intergenic |
| TGGAGAAAGAGCGGGAATTT+GGG | 0.341540 | 5.1:+66714386 | None:intergenic |
| AGAGCGGTTTGTAAGGAGTT+AGG | 0.349298 | 5.1:-66713418 | MS.gene81670:CDS |
| TTTAATAAGCGGGTCACAAT+AGG | 0.351904 | 5.1:+66713297 | None:intergenic |
| TTTCATGTATTGTGTTATCA+TGG | 0.353729 | 5.1:-66714042 | MS.gene81670:CDS |
| AGGGAGAGGTGATCAGTTAC+AGG | 0.358936 | 5.1:-66713194 | MS.gene81670:CDS |
| CAAAGAAAATAACAACCTTT+AGG | 0.370775 | 5.1:+66714090 | None:intergenic |
| TATCTCACAAGACATTCTAT+TGG | 0.371889 | 5.1:+66713031 | None:intergenic |
| AAATGGAAGAAGATGGGTTT+TGG | 0.374297 | 5.1:+66714445 | None:intergenic |
| GAAGCAGTAAAATTGTTTCC+AGG | 0.374900 | 5.1:-66713214 | MS.gene81670:CDS |
| CTGCCTCGTAGAAGCTGGTT+TGG | 0.378167 | 5.1:-66713161 | MS.gene81670:CDS |
| GGTGCAAGAAATTGGGGTTT+TGG | 0.381606 | 5.1:+66714466 | None:intergenic |
| TTTATACGTTGCCAGATTGT+TGG | 0.388911 | 5.1:+66712842 | None:intergenic |
| TTGAAAGAAATGGAAGAAGA+TGG | 0.405404 | 5.1:+66714438 | None:intergenic |
| TGGGTATGGAAATGGAGTTT+TGG | 0.409236 | 5.1:-66713968 | MS.gene81670:CDS |
| ATCCTGAAGGTCCAACAATC+TGG | 0.424676 | 5.1:-66712853 | MS.gene81670:CDS |
| ATCTCACAAGACATTCTATT+GGG | 0.431195 | 5.1:+66713032 | None:intergenic |
| AGGTTATAGAGCGGTTTGTA+AGG | 0.431374 | 5.1:-66713425 | MS.gene81670:CDS |
| CGGCTTTCTTGCTGAAACTA+GGG | 0.439594 | 5.1:-66713264 | MS.gene81670:CDS |
| GCTTATTAAATTGGAGAAAA+CGG | 0.440222 | 5.1:-66713284 | MS.gene81670:CDS |
| TGATCAGTTACAGGAGAGAT+TGG | 0.453405 | 5.1:-66713185 | MS.gene81670:CDS |
| TTCATGTATTGTGTTATCAT+GGG | 0.455291 | 5.1:-66714041 | MS.gene81670:CDS |
| TGAAAGAAATGGAAGAAGAT+GGG | 0.458028 | 5.1:+66714439 | None:intergenic |
| ACACTTACTCGACAATATAT+CGG | 0.459640 | 5.1:+66713561 | None:intergenic |
| ACGGCTTTCTTGCTGAAACT+AGG | 0.474798 | 5.1:-66713265 | MS.gene81670:CDS |
| ATCTTCGCCATTCGATTCCT+CGG | 0.482527 | 5.1:+66714015 | None:intergenic |
| TTCAATGTATGAGTGGTTGA+AGG | 0.494343 | 5.1:-66712963 | MS.gene81670:CDS |
| TTAGGGTTGAAGAGAAAGAA+TGG | 0.499067 | 5.1:+66714519 | None:intergenic |
| TTGGACTGCCTCGTAGAAGC+TGG | 0.500999 | 5.1:-66713166 | MS.gene81670:CDS |
| CTTCTAAACAGAAACATAAG+AGG | 0.503889 | 5.1:-66713333 | MS.gene81670:CDS |
| TGTATGAGTGGTTGAAGGAA+AGG | 0.504426 | 5.1:-66712958 | MS.gene81670:CDS |
| TATGGAAAACTCTGAGGAGA+TGG | 0.511741 | 5.1:-66713239 | MS.gene81670:CDS |
| GTAAAATTGTTTCCAGGGAG+AGG | 0.518160 | 5.1:-66713208 | MS.gene81670:CDS |
| GTAAATTGGTGGAGAAAGAG+CGG | 0.528173 | 5.1:+66714377 | None:intergenic |
| TCATGTATTGTGTTATCATG+GGG | 0.535058 | 5.1:-66714040 | MS.gene81670:CDS |
| TAGGGTTGAAGAGAAAGAAT+GGG | 0.541091 | 5.1:+66714520 | None:intergenic |
| AAGCAGTAAAATTGTTTCCA+GGG | 0.543083 | 5.1:-66713213 | MS.gene81670:CDS |
| ATGAGGAAATTGATGAAATG+TGG | 0.545861 | 5.1:+66714249 | None:intergenic |
| GCCAAACTAATAAGCTCCAA+TGG | 0.546201 | 5.1:+66713355 | None:intergenic |
| AATCATAAACGATGATCCAT+TGG | 0.546725 | 5.1:-66713371 | MS.gene81670:CDS |
| ATATGAAACTATGGTACTCA+AGG | 0.555816 | 5.1:+66712913 | None:intergenic |
| AGAAAGAGCGGGAATTTGGG+TGG | 0.556121 | 5.1:+66714389 | None:intergenic |
| TTGTAGCACTGCGATTAGAA+TGG | 0.562098 | 5.1:-66713137 | MS.gene81670:CDS |
| TGTAACTGATCACCTCTCCC+TGG | 0.577413 | 5.1:+66713196 | None:intergenic |
| TAAATTGGTGGAGAAAGAGC+GGG | 0.577774 | 5.1:+66714378 | None:intergenic |
| CAGAAACATAAGAGGAGTGG+AGG | 0.579021 | 5.1:-66713325 | MS.gene81670:CDS |
| TGTGTTATCATGGGGTTCCG+AGG | 0.589302 | 5.1:-66714032 | MS.gene81670:CDS |
| GAAAGTGAAAGAGTTCCCAT+TGG | 0.599604 | 5.1:+66714558 | None:intergenic |
| AAACAGAAACATAAGAGGAG+TGG | 0.607869 | 5.1:-66713328 | MS.gene81670:CDS |
| GCGCGTTTGATGTAAATTGG+TGG | 0.612365 | 5.1:+66714366 | None:intergenic |
| TTCGATAAAAGGTTATAGAG+CGG | 0.623688 | 5.1:-66713434 | MS.gene81670:CDS |
| TGGGGTTCCGAGGAATCGAA+TGG | 0.633090 | 5.1:-66714022 | MS.gene81670:CDS |
| AGAAACATAAGAGGAGTGGA+GGG | 0.636056 | 5.1:-66713324 | MS.gene81670:CDS |
| CAAGAGTTTCAATGTATGAG+TGG | 0.645039 | 5.1:-66712970 | MS.gene81670:CDS |
| AAAATCAACATCCCTGACGA+TGG | 0.646277 | 5.1:-66714222 | MS.gene81670:CDS |
| TATATTGTCGAGTAAGTGTG+TGG | 0.647992 | 5.1:-66713557 | MS.gene81670:CDS |
| TTTGTGAATATGCATCCTGA+AGG | 0.654931 | 5.1:-66712866 | MS.gene81670:CDS |
| AGGGTATATGGAAAACTCTG+AGG | 0.686033 | 5.1:-66713245 | MS.gene81670:CDS |
| GAGTTTAGGAATTAATCACA+CGG | 0.713083 | 5.1:-66714130 | MS.gene81670:CDS |
| AATCCAAACCAGCTTCTACG+AGG | 0.736492 | 5.1:+66713158 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTTTCATATAATGAAAAA+CGG | - | chr5.1:66714468-66714487 | MS.gene81670:CDS | 15.0% |
| !!! | TTTTTCATTATATGAAACTA+TGG | + | chr5.1:66714468-66714487 | None:intergenic | 15.0% |
| !!! | TTTTTTGTATAATATTCGAA+TGG | - | chr5.1:66713857-66713876 | MS.gene81670:intron | 15.0% |
| !! | ATTTCAAGATTATGAAGATT+TGG | - | chr5.1:66713431-66713450 | MS.gene81670:CDS | 20.0% |
| !! | GATTTCTTAAAAAACACTTT+AGG | - | chr5.1:66714311-66714330 | MS.gene81670:CDS | 20.0% |
| !! | TTTCAAGATTATGAAGATTT+GGG | - | chr5.1:66713432-66713451 | MS.gene81670:CDS | 20.0% |
| ! | AAAAGGTTCAAATTCGTTAA+TGG | + | chr5.1:66713214-66713233 | None:intergenic | 25.0% |
| ! | AAAGGTTCAAATTCGTTAAT+GGG | + | chr5.1:66713213-66713232 | None:intergenic | 25.0% |
| ! | CAAAGAAAATAACAACCTTT+AGG | + | chr5.1:66713282-66713301 | None:intergenic | 25.0% |
| ! | GCTTATTAAATTGGAGAAAA+CGG | - | chr5.1:66714085-66714104 | MS.gene81670:CDS | 25.0% |
| ! | TTCATGTATTGTGTTATCAT+GGG | - | chr5.1:66713328-66713347 | MS.gene81670:CDS | 25.0% |
| ! | TTGGAAAAATTTCTACCTAA+AGG | - | chr5.1:66713264-66713283 | MS.gene81670:CDS | 25.0% |
| ! | TTTCATGTATTGTGTTATCA+TGG | - | chr5.1:66713327-66713346 | MS.gene81670:CDS | 25.0% |
| ! | TTTGAATTACATTTCTCTTC+AGG | + | chr5.1:66714283-66714302 | None:intergenic | 25.0% |
| !! | ATTCCTAAACTCTCTAAAAA+AGG | + | chr5.1:66713231-66713250 | None:intergenic | 25.0% |
| !! | GTTTTCTCCAATTTAATAAG+CGG | + | chr5.1:66714086-66714105 | None:intergenic | 25.0% |
| !! | TTGATTGGTTGAAAAGAATT+GGG | - | chr5.1:66713541-66713560 | MS.gene81670:CDS | 25.0% |
| !! | TTTTCTCCAATTTAATAAGC+GGG | + | chr5.1:66714085-66714104 | None:intergenic | 25.0% |
| !!! | ACATATGTATGATTTGTTCA+AGG | - | chr5.1:66713671-66713690 | MS.gene81670:intron | 25.0% |
| !!! | ATATGTATGATTTGTTCAAG+GGG | - | chr5.1:66713673-66713692 | MS.gene81670:intron | 25.0% |
| !!! | CATATGTATGATTTGTTCAA+GGG | - | chr5.1:66713672-66713691 | MS.gene81670:intron | 25.0% |
| !!! | GGTTGAATTTTTGAAAGAAA+TGG | + | chr5.1:66712944-66712963 | None:intergenic | 25.0% |
| !!! | TTAGAGTTTTTTCATCAAGT+GGG | - | chr5.1:66713636-66713655 | MS.gene81670:intron | 25.0% |
| !!! | TTTAGAGTTTTTTCATCAAG+TGG | - | chr5.1:66713635-66713654 | MS.gene81670:intron | 25.0% |
| AAGCAGTAAAATTGTTTCCA+GGG | - | chr5.1:66714156-66714175 | MS.gene81670:CDS | 30.0% | |
| AATCATAAACGATGATCCAT+TGG | - | chr5.1:66713998-66714017 | MS.gene81670:CDS | 30.0% | |
| ACACTTACTCGACAATATAT+CGG | + | chr5.1:66713811-66713830 | None:intergenic | 30.0% | |
| ATATGAAACTATGGTACTCA+AGG | + | chr5.1:66714459-66714478 | None:intergenic | 30.0% | |
| ATCTCACAAGACATTCTATT+GGG | + | chr5.1:66714340-66714359 | None:intergenic | 30.0% | |
| ATGAGGAAATTGATGAAATG+TGG | + | chr5.1:66713123-66713142 | None:intergenic | 30.0% | |
| CTTCTAAACAGAAACATAAG+AGG | - | chr5.1:66714036-66714055 | MS.gene81670:CDS | 30.0% | |
| GAGTTTAGGAATTAATCACA+CGG | - | chr5.1:66713239-66713258 | MS.gene81670:CDS | 30.0% | |
| TATCTCACAAGACATTCTAT+TGG | + | chr5.1:66714341-66714360 | None:intergenic | 30.0% | |
| TCATGTATTGTGTTATCATG+GGG | - | chr5.1:66713329-66713348 | MS.gene81670:CDS | 30.0% | |
| TGAAAGAAATGGAAGAAGAT+GGG | + | chr5.1:66712933-66712952 | None:intergenic | 30.0% | |
| TTCGATAAAAGGTTATAGAG+CGG | - | chr5.1:66713935-66713954 | MS.gene81670:intron | 30.0% | |
| TTGAAAGAAATGGAAGAAGA+TGG | + | chr5.1:66712934-66712953 | None:intergenic | 30.0% | |
| TTGAGCAAACATTCGATAAA+AGG | - | chr5.1:66713924-66713943 | MS.gene81670:intron | 30.0% | |
| ! | ATTCTGCATAAATCAGCTTT+TGG | + | chr5.1:66713981-66714000 | None:intergenic | 30.0% |
| ! | CTTGATTGGTTGAAAAGAAT+TGG | - | chr5.1:66713540-66713559 | MS.gene81670:CDS | 30.0% |
| !! | AGTTTGTTGTTGTTCTTGAT+TGG | - | chr5.1:66713526-66713545 | MS.gene81670:CDS | 30.0% |
| !! | ATACCCAACATACTTTTTAC+AGG | - | chr5.1:66714358-66714377 | MS.gene81670:CDS | 30.0% |
| !! | TATGTATGATTTGTTCAAGG+GGG | - | chr5.1:66713674-66713693 | MS.gene81670:intron | 30.0% |
| !!! | GAAATTTTTGGGTATGGAAA+TGG | - | chr5.1:66713393-66713412 | MS.gene81670:CDS | 30.0% |
| !!! | GAACCTTTTTTAGAGAGTTT+AGG | - | chr5.1:66713225-66713244 | MS.gene81670:CDS | 30.0% |
| AAACAGAAACATAAGAGGAG+TGG | - | chr5.1:66714041-66714060 | MS.gene81670:CDS | 35.0% | |
| AGACCTTCCAACAACAAATT+CGG | + | chr5.1:66713702-66713721 | None:intergenic | 35.0% | |
| AGGAATTAATCACACGGAAT+TGG | - | chr5.1:66713245-66713264 | MS.gene81670:CDS | 35.0% | |
| CAAGAGTTTCAATGTATGAG+TGG | - | chr5.1:66714399-66714418 | MS.gene81670:CDS | 35.0% | |
| CCCAAAAATTTCTCTTGCTT+CGG | + | chr5.1:66713385-66713404 | None:intergenic | 35.0% | |
| CTCTTCAGGATTAGAATCTT+AGG | + | chr5.1:66714269-66714288 | None:intergenic | 35.0% | |
| GAAGCAGTAAAATTGTTTCC+AGG | - | chr5.1:66714155-66714174 | MS.gene81670:CDS | 35.0% | |
| GAATTGGGATTGAGAGTAAA+TGG | - | chr5.1:66713556-66713575 | MS.gene81670:CDS | 35.0% | |
| TAGGGTTGAAGAGAAAGAAT+GGG | + | chr5.1:66712852-66712871 | None:intergenic | 35.0% | |
| TATATTGTCGAGTAAGTGTG+TGG | - | chr5.1:66713812-66713831 | MS.gene81670:intron | 35.0% | |
| TCCATTGGAGCTTATTAGTT+TGG | - | chr5.1:66714013-66714032 | MS.gene81670:CDS | 35.0% | |
| TTAGGGTTGAAGAGAAAGAA+TGG | + | chr5.1:66712853-66712872 | None:intergenic | 35.0% | |
| TTCAATGTATGAGTGGTTGA+AGG | - | chr5.1:66714406-66714425 | MS.gene81670:CDS | 35.0% | |
| TTGTGACCCGCTTATTAAAT+TGG | - | chr5.1:66714076-66714095 | MS.gene81670:CDS | 35.0% | |
| TTTAATAAGCGGGTCACAAT+AGG | + | chr5.1:66714075-66714094 | None:intergenic | 35.0% | |
| TTTATACGTTGCCAGATTGT+TGG | + | chr5.1:66714530-66714549 | None:intergenic | 35.0% | |
| TTTGTGAATATGCATCCTGA+AGG | - | chr5.1:66714503-66714522 | MS.gene81670:CDS | 35.0% | |
| ! | ACCGAAGCAAGAGAAATTTT+TGG | - | chr5.1:66713381-66713400 | MS.gene81670:CDS | 35.0% |
| ! | ACGTCCTGTAAAAAGTATGT+TGG | + | chr5.1:66714365-66714384 | None:intergenic | 35.0% |
| ! | CCGAAGCAAGAGAAATTTTT+GGG | - | chr5.1:66713382-66713401 | MS.gene81670:CDS | 35.0% |
| ! | CGTCCTGTAAAAAGTATGTT+GGG | + | chr5.1:66714364-66714383 | None:intergenic | 35.0% |
| ! | GATGAAATGTGGAGAGTTTT+TGG | + | chr5.1:66713112-66713131 | None:intergenic | 35.0% |
| ! | GTGAGAAAAATTGGGGTTTT+GGG | + | chr5.1:66712884-66712903 | None:intergenic | 35.0% |
| ! | TCTAGGTCGGTTTATTAAGT+CGG | - | chr5.1:66713743-66713762 | MS.gene81670:intron | 35.0% |
| ! | TGAGAAAAATTGGGGTTTTG+GGG | + | chr5.1:66712883-66712902 | None:intergenic | 35.0% |
| !! | AAATGGAAGAAGATGGGTTT+TGG | + | chr5.1:66712927-66712946 | None:intergenic | 35.0% |
| !! | AACATACTTTTTACAGGACG+TGG | - | chr5.1:66714364-66714383 | MS.gene81670:CDS | 35.0% |
| !! | AATTTGTTGTTGGAAGGTCT+AGG | - | chr5.1:66713702-66713721 | MS.gene81670:intron | 35.0% |
| !! | ATTTGTTGTTGGAAGGTCTA+GGG | - | chr5.1:66713703-66713722 | MS.gene81670:intron | 35.0% |
| !! | GGGTTTTGGTGAGAAAAATT+GGG | + | chr5.1:66712892-66712911 | None:intergenic | 35.0% |
| !! | GGTTTTGGTGAGAAAAATTG+GGG | + | chr5.1:66712891-66712910 | None:intergenic | 35.0% |
| !!! | GCAAGAGAAATTTTTGGGTA+TGG | - | chr5.1:66713387-66713406 | MS.gene81670:CDS | 35.0% |
| !!! | TGTTTGTTGTCCTTTGCTTT+TGG | - | chr5.1:66713485-66713504 | MS.gene81670:CDS | 35.0% |
| AAAATCAACATCCCTGACGA+TGG | - | chr5.1:66713147-66713166 | MS.gene81670:CDS | 40.0% | |
| ACATCACCAACCAAAAGCAA+AGG | + | chr5.1:66713498-66713517 | None:intergenic | 40.0% | |
| AGAAACATAAGAGGAGTGGA+GGG | - | chr5.1:66714045-66714064 | MS.gene81670:CDS | 40.0% | |
| AGGGTATATGGAAAACTCTG+AGG | - | chr5.1:66714124-66714143 | MS.gene81670:CDS | 40.0% | |
| AGGTTATAGAGCGGTTTGTA+AGG | - | chr5.1:66713944-66713963 | MS.gene81670:CDS | 40.0% | |
| CTTGCTGAAACTAGGGTATA+TGG | - | chr5.1:66714112-66714131 | MS.gene81670:CDS | 40.0% | |
| GCCAAACTAATAAGCTCCAA+TGG | + | chr5.1:66714017-66714036 | None:intergenic | 40.0% | |
| GTAAAATTGTTTCCAGGGAG+AGG | - | chr5.1:66714161-66714180 | MS.gene81670:CDS | 40.0% | |
| GTAAATTGGTGGAGAAAGAG+CGG | + | chr5.1:66712995-66713014 | None:intergenic | 40.0% | |
| TAAATTGGTGGAGAAAGAGC+GGG | + | chr5.1:66712994-66713013 | None:intergenic | 40.0% | |
| TGATCAGTTACAGGAGAGAT+TGG | - | chr5.1:66714184-66714203 | MS.gene81670:CDS | 40.0% | |
| TGTATGAGTGGTTGAAGGAA+AGG | - | chr5.1:66714411-66714430 | MS.gene81670:CDS | 40.0% | |
| TTGTAGCACTGCGATTAGAA+TGG | - | chr5.1:66714232-66714251 | MS.gene81670:CDS | 40.0% | |
| ! | ACGTTGTGCTTCAATTTTCG+TGG | + | chr5.1:66713028-66713047 | None:intergenic | 40.0% |
| ! | AGGAAGCTGTTCTTGTTTCT+AGG | - | chr5.1:66713726-66713745 | MS.gene81670:intron | 40.0% |
| ! | CTAGGTCGGTTTATTAAGTC+GGG | - | chr5.1:66713744-66713763 | MS.gene81670:intron | 40.0% |
| ! | GGTGAGAAAAATTGGGGTTT+TGG | + | chr5.1:66712885-66712904 | None:intergenic | 40.0% |
| ! | TATGGAAAACTCTGAGGAGA+TGG | - | chr5.1:66714130-66714149 | MS.gene81670:CDS | 40.0% |
| ! | TGGGTATGGAAATGGAGTTT+TGG | - | chr5.1:66713401-66713420 | MS.gene81670:CDS | 40.0% |
| !! | AGCTGTTCTTGTTTCTAGGT+CGG | - | chr5.1:66713730-66713749 | MS.gene81670:intron | 40.0% |
| !! | CTAGTTCTAGCACTTATAGC+TGG | - | chr5.1:66713595-66713614 | MS.gene81670:intron | 40.0% |
| !! | GATCCGAATTTGTTGTTGGA+AGG | - | chr5.1:66713696-66713715 | MS.gene81670:intron | 40.0% |
| !! | GGGGTTTTGGTGAGAAAAAT+TGG | + | chr5.1:66712893-66712912 | None:intergenic | 40.0% |
| !! | GGGTTTTGGTGCAAGAAATT+GGG | + | chr5.1:66712913-66712932 | None:intergenic | 40.0% |
| !! | GGTGGATTTTGAACAGTTCA+AGG | + | chr5.1:66712965-66712984 | None:intergenic | 40.0% |
| !! | GGTTTTGGTGCAAGAAATTG+GGG | + | chr5.1:66712912-66712931 | None:intergenic | 40.0% |
| !! | TGGGTTTTGGTGCAAGAAAT+TGG | + | chr5.1:66712914-66712933 | None:intergenic | 40.0% |
| !! | TGTTGTCCTTTGCTTTTGGT+TGG | - | chr5.1:66713489-66713508 | MS.gene81670:CDS | 40.0% |
| !!! | ATCGTCAGGGATGTTGATTT+TGG | + | chr5.1:66713148-66713167 | None:intergenic | 40.0% |
| !!! | GGATGTTGATTTTGGAGATG+AGG | + | chr5.1:66713140-66713159 | None:intergenic | 40.0% |
| !!! | TGTAGTTTTGTGTGCAGTGA+AGG | + | chr5.1:66713065-66713084 | None:intergenic | 40.0% |
| AATCCAAACCAGCTTCTACG+AGG | + | chr5.1:66714214-66714233 | None:intergenic | 45.0% | |
| ACGGCTTTCTTGCTGAAACT+AGG | - | chr5.1:66714104-66714123 | MS.gene81670:CDS | 45.0% | |
| AGAGCGGTTTGTAAGGAGTT+AGG | - | chr5.1:66713951-66713970 | MS.gene81670:CDS | 45.0% | |
| ATCCTGAAGGTCCAACAATC+TGG | - | chr5.1:66714516-66714535 | MS.gene81670:CDS | 45.0% | |
| ATCTTCGCCATTCGATTCCT+CGG | + | chr5.1:66713357-66713376 | None:intergenic | 45.0% | |
| CAGAAACATAAGAGGAGTGG+AGG | - | chr5.1:66714044-66714063 | MS.gene81670:CDS | 45.0% | |
| CGGCTTTCTTGCTGAAACTA+GGG | - | chr5.1:66714105-66714124 | MS.gene81670:CDS | 45.0% | |
| GCGCGTTTGATGTAAATTGG+TGG | + | chr5.1:66713006-66713025 | None:intergenic | 45.0% | |
| GTGGCGCGTTTGATGTAAAT+TGG | + | chr5.1:66713009-66713028 | None:intergenic | 45.0% | |
| TGGAGAAAGAGCGGGAATTT+GGG | + | chr5.1:66712986-66713005 | None:intergenic | 45.0% | |
| ! | GGTGCAAGAAATTGGGGTTT+TGG | + | chr5.1:66712906-66712925 | None:intergenic | 45.0% |
| !!! | AAAATTGGGGTTTTGGGGTG+TGG | + | chr5.1:66712878-66712897 | None:intergenic | 45.0% |
| !!! | GGTTTTGGGGTGTGGAATTA+GGG | + | chr5.1:66712870-66712889 | None:intergenic | 45.0% |
| AGAAAGAGCGGGAATTTGGG+TGG | + | chr5.1:66712983-66713002 | None:intergenic | 50.0% | |
| AGGGAGAGGTGATCAGTTAC+AGG | - | chr5.1:66714175-66714194 | MS.gene81670:CDS | 50.0% | |
| GAAAAACGTCGCCATCGTCA+GGG | + | chr5.1:66713161-66713180 | None:intergenic | 50.0% | |
| GTGGAGAAAGAGCGGGAATT+TGG | + | chr5.1:66712987-66713006 | None:intergenic | 50.0% | |
| TGCCAGATTGTTGGACCTTC+AGG | + | chr5.1:66714521-66714540 | None:intergenic | 50.0% | |
| TGTAACTGATCACCTCTCCC+TGG | + | chr5.1:66714176-66714195 | None:intergenic | 50.0% | |
| TGTGTTATCATGGGGTTCCG+AGG | - | chr5.1:66713337-66713356 | MS.gene81670:CDS | 50.0% | |
| TGTTGTTGGAAGGTCTAGGG+AGG | - | chr5.1:66713706-66713725 | MS.gene81670:intron | 50.0% | |
| ! | ACGTTTTTCGTGCTCTCAGC+AGG | - | chr5.1:66713172-66713191 | MS.gene81670:CDS | 50.0% |
| !! | GGGGGATCCGAATTTGTTGT+TGG | - | chr5.1:66713692-66713711 | MS.gene81670:intron | 50.0% |
| !!! | GGGTTTTGGGGTGTGGAATT+AGG | + | chr5.1:66712871-66712890 | None:intergenic | 50.0% |
| CGAAAAACGTCGCCATCGTC+AGG | + | chr5.1:66713162-66713181 | None:intergenic | 55.0% | |
| CTGCCTCGTAGAAGCTGGTT+TGG | - | chr5.1:66714208-66714227 | MS.gene81670:CDS | 55.0% | |
| TGGGGTTCCGAGGAATCGAA+TGG | - | chr5.1:66713347-66713366 | MS.gene81670:CDS | 55.0% | |
| TTGGACTGCCTCGTAGAAGC+TGG | - | chr5.1:66714203-66714222 | MS.gene81670:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 66712814 | 66714577 | 66712814 | ID=MS.gene81670 |
| chr5.1 | mRNA | 66712814 | 66714577 | 66712814 | ID=MS.gene81670.t1;Parent=MS.gene81670 |
| chr5.1 | exon | 66713938 | 66714577 | 66713938 | ID=MS.gene81670.t1.exon1;Parent=MS.gene81670.t1 |
| chr5.1 | CDS | 66713938 | 66714577 | 66713938 | ID=cds.MS.gene81670.t1;Parent=MS.gene81670.t1 |
| chr5.1 | exon | 66712814 | 66713589 | 66712814 | ID=MS.gene81670.t1.exon2;Parent=MS.gene81670.t1 |
| chr5.1 | CDS | 66712814 | 66713589 | 66712814 | ID=cds.MS.gene81670.t1;Parent=MS.gene81670.t1 |
| Gene Sequence |
| Protein sequence |
