Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81672.t1 | PNX78236.1 | 62.1 | 428 | 107 | 4 | 4 | 384 | 187 | 606 | 5.20E-148 | 534.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81672.t1 | A0A2K3LI91 | 62.1 | 428 | 107 | 4 | 4 | 384 | 187 | 606 | 3.7e-148 | 534.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051710 | MS.gene81672 | 0.814448 | 1.53E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81672.t1 | MTR_7g078980 | 74.545 | 55 | 14 | 0 | 35 | 89 | 57 | 111 | 1.55e-19 | 84.0 |
| MS.gene81672.t1 | MTR_7g078930 | 74.545 | 55 | 14 | 0 | 35 | 89 | 75 | 129 | 1.67e-19 | 84.3 |
| MS.gene81672.t1 | MTR_1g055005 | 43.299 | 97 | 51 | 2 | 260 | 354 | 47 | 141 | 1.05e-13 | 69.7 |
| MS.gene81672.t1 | MTR_3g028350 | 38.636 | 88 | 29 | 2 | 120 | 207 | 43 | 105 | 4.43e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81672.t1 | AT5G33406 | 42.667 | 375 | 161 | 5 | 53 | 374 | 1 | 374 | 1.64e-98 | 303 |
| MS.gene81672.t1 | AT3G22220 | 33.795 | 361 | 184 | 7 | 1 | 311 | 342 | 697 | 6.97e-54 | 191 |
| MS.gene81672.t1 | AT3G22220 | 33.795 | 361 | 184 | 7 | 1 | 311 | 342 | 697 | 6.97e-54 | 191 |
| MS.gene81672.t1 | AT3G22220 | 33.795 | 361 | 184 | 7 | 1 | 311 | 342 | 697 | 6.97e-54 | 191 |
| MS.gene81672.t1 | AT3G22220 | 33.795 | 361 | 184 | 7 | 1 | 311 | 342 | 697 | 6.97e-54 | 191 |
| MS.gene81672.t1 | AT4G15020 | 32.961 | 358 | 188 | 7 | 5 | 313 | 350 | 704 | 9.99e-53 | 188 |
| MS.gene81672.t1 | AT4G15020 | 32.961 | 358 | 188 | 7 | 5 | 313 | 350 | 704 | 9.99e-53 | 188 |
| MS.gene81672.t1 | AT1G79740 | 29.679 | 374 | 201 | 9 | 1 | 325 | 124 | 484 | 4.70e-48 | 171 |
| MS.gene81672.t1 | AT1G79740 | 29.679 | 374 | 201 | 9 | 1 | 325 | 124 | 484 | 4.70e-48 | 171 |
| MS.gene81672.t1 | AT1G79740 | 29.679 | 374 | 201 | 9 | 1 | 325 | 257 | 617 | 4.80e-47 | 171 |
| MS.gene81672.t1 | AT1G79740 | 29.679 | 374 | 201 | 9 | 1 | 325 | 257 | 617 | 4.80e-47 | 171 |
| MS.gene81672.t1 | AT3G17450 | 27.596 | 337 | 193 | 5 | 2 | 288 | 455 | 790 | 1.26e-44 | 166 |
| MS.gene81672.t1 | AT3G17450 | 27.596 | 337 | 193 | 5 | 2 | 288 | 455 | 790 | 1.26e-44 | 166 |
| MS.gene81672.t1 | AT3G13030 | 29.909 | 331 | 173 | 7 | 7 | 286 | 207 | 529 | 5.14e-35 | 136 |
| MS.gene81672.t1 | AT3G13030 | 29.909 | 331 | 173 | 7 | 7 | 286 | 207 | 529 | 5.14e-35 | 136 |
| MS.gene81672.t1 | AT3G13030 | 29.909 | 331 | 173 | 7 | 7 | 286 | 207 | 529 | 5.14e-35 | 136 |
| MS.gene81672.t1 | AT3G13030 | 29.909 | 331 | 173 | 7 | 7 | 286 | 207 | 529 | 5.14e-35 | 136 |
| MS.gene81672.t1 | AT3G13020 | 28.875 | 329 | 178 | 7 | 7 | 286 | 280 | 601 | 9.47e-32 | 127 |
| MS.gene81672.t1 | AT3G13030 | 27.356 | 329 | 151 | 7 | 7 | 286 | 207 | 496 | 3.84e-26 | 110 |
| MS.gene81672.t1 | AT1G36095 | 40.164 | 122 | 73 | 0 | 1 | 122 | 177 | 298 | 3.24e-21 | 93.6 |
| MS.gene81672.t1 | AT3G13010 | 22.754 | 334 | 198 | 10 | 2 | 287 | 248 | 569 | 5.86e-14 | 73.9 |
Find 86 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAGTTTACTTCTCTTCT+TGG | 0.123186 | 5.1:-66697483 | None:intergenic |
| ATGCAAACCTCTCAGCAATT+TGG | 0.171724 | 5.1:-66697021 | None:intergenic |
| GTGCACTTCTGCCATCATTT+TGG | 0.194903 | 5.1:+66696718 | MS.gene81672:CDS |
| TCCTCTTCACCATAATAATT+TGG | 0.200278 | 5.1:-66697899 | None:intergenic |
| GGTTTACTATAAAAGTATTT+AGG | 0.246423 | 5.1:-66696981 | None:intergenic |
| TTGGGATCTTTCTCAATATC+TGG | 0.254367 | 5.1:-66697002 | None:intergenic |
| TATCATACTGAATGGTTAAC+AGG | 0.259479 | 5.1:+66697611 | MS.gene81672:CDS |
| TGAACACAAGGACTAGTATT+AGG | 0.265415 | 5.1:+66697747 | MS.gene81672:CDS |
| TAAGATTCCTAGGATTAAAA+AGG | 0.284991 | 5.1:+66696452 | MS.gene81672:CDS |
| GAGGATGATCCAAATTATTA+TGG | 0.286471 | 5.1:+66697890 | MS.gene81672:CDS |
| AGAACAAACCTCACATCTTT+TGG | 0.312210 | 5.1:+66696382 | MS.gene81672:CDS |
| AGTTTGGTTTGTAGTGCTTC+AGG | 0.326354 | 5.1:+66697328 | MS.gene81672:CDS |
| CTTCAGGATGTGAGCGCAAC+TGG | 0.351319 | 5.1:+66697344 | MS.gene81672:CDS |
| TGCAAACCTCTCAGCAATTT+GGG | 0.359854 | 5.1:-66697020 | None:intergenic |
| GCTGAGTGGTGGATGAATTA+TGG | 0.375891 | 5.1:+66697262 | MS.gene81672:intron |
| TCATGAACAAATTCTTCAAC+AGG | 0.376778 | 5.1:-66697665 | None:intergenic |
| CAAAAGGGGTGTTCTCTTGT+AGG | 0.377000 | 5.1:+66696480 | MS.gene81672:CDS |
| AAGAAGATGATGATGATAAT+TGG | 0.385196 | 5.1:+66697864 | MS.gene81672:CDS |
| AACCAAACTCAGCACTTTGA+TGG | 0.386442 | 5.1:-66697314 | None:intergenic |
| GGCCATCAAAGTGCTGAGTT+TGG | 0.386630 | 5.1:+66697312 | MS.gene81672:CDS |
| GTATTTGTTGAAGATGTTGT+AGG | 0.393067 | 5.1:+66697833 | MS.gene81672:CDS |
| GACCTCATGTTGGAAGATAT+TGG | 0.394320 | 5.1:+66696429 | MS.gene81672:CDS |
| GTTGAGTTCCAAGTGCAATA+AGG | 0.408152 | 5.1:+66696668 | MS.gene81672:CDS |
| CATATCGGTCTTTCAAAGCT+TGG | 0.413634 | 5.1:-66697544 | None:intergenic |
| TTTAACCAACTCAACATTGT+TGG | 0.417354 | 5.1:-66696550 | None:intergenic |
| AAGATATTGGTAAGATTCCT+AGG | 0.417549 | 5.1:+66696442 | MS.gene81672:CDS |
| GCATATATTTCACCCATTGC+AGG | 0.418557 | 5.1:-66696816 | None:intergenic |
| CTAGTCCTTGTGTTCACTAT+AGG | 0.424301 | 5.1:-66697740 | None:intergenic |
| GAACACAAGGACTAGTATTA+GGG | 0.424426 | 5.1:+66697748 | MS.gene81672:CDS |
| CTCATTAACCCCACTTGCAT+TGG | 0.431159 | 5.1:-66697717 | None:intergenic |
| AACAGGGGAGATGGAAGAGA+TGG | 0.441699 | 5.1:+66697628 | MS.gene81672:CDS |
| TCAAAATCATTGATAAAAGA+TGG | 0.443562 | 5.1:+66696910 | MS.gene81672:CDS |
| ATGAAAATGATGATCTAACT+TGG | 0.444991 | 5.1:+66697684 | MS.gene81672:CDS |
| ATGGAAGAGATGGGAGAGGA+TGG | 0.449395 | 5.1:+66697638 | MS.gene81672:CDS |
| TATAAAAGTATTTAGGATTG+AGG | 0.457902 | 5.1:-66696974 | None:intergenic |
| CATCATCCATTGCATGCTGC+TGG | 0.483368 | 5.1:+66696945 | MS.gene81672:CDS |
| AACTCCGGATTTGACACTAA+TGG | 0.490085 | 5.1:+66697291 | MS.gene81672:CDS |
| TTTAGCTTCCTTATTGCACT+TGG | 0.494175 | 5.1:-66696676 | None:intergenic |
| TAAGGAAGCTAAAGGTAGGC+AGG | 0.502654 | 5.1:+66696686 | MS.gene81672:CDS |
| TCTTGTTGACGTGCTAAGAA+TGG | 0.508954 | 5.1:+66696776 | MS.gene81672:CDS |
| ATGGCCATTAGTGTCAAATC+CGG | 0.512170 | 5.1:-66697295 | None:intergenic |
| TTGTTCCTTCGCATTATCCA+TGG | 0.512640 | 5.1:-66696841 | None:intergenic |
| ACAGGGGAGATGGAAGAGAT+GGG | 0.516932 | 5.1:+66697629 | MS.gene81672:CDS |
| TTAAAATCATACAACATCAC+GGG | 0.516976 | 5.1:-66697587 | None:intergenic |
| GAAAACCAACAATGTTGAGT+TGG | 0.522947 | 5.1:+66696545 | MS.gene81672:CDS |
| GCATCAGAAGTTGCAAGAGT+TGG | 0.523127 | 5.1:+66697505 | MS.gene81672:CDS |
| CCACATTTCTTACTTTGCAA+AGG | 0.529530 | 5.1:+66696595 | MS.gene81672:CDS |
| CATTTGCTTTGAGCCTAATG+AGG | 0.529987 | 5.1:+66696520 | MS.gene81672:CDS |
| AGTACATCATTCCAAAATGA+TGG | 0.537042 | 5.1:-66696729 | None:intergenic |
| GGAGATGGAAGAGATGGGAG+AGG | 0.537948 | 5.1:+66697634 | MS.gene81672:CDS |
| TGAATGGTTAACAGGGGAGA+TGG | 0.538791 | 5.1:+66697619 | MS.gene81672:CDS |
| CAAAATCATTGATAAAAGAT+GGG | 0.542128 | 5.1:+66696911 | MS.gene81672:CDS |
| ATTAAAATCATACAACATCA+CGG | 0.545758 | 5.1:-66697588 | None:intergenic |
| TCTTGTCAAGACAATCATAT+CGG | 0.545836 | 5.1:-66697559 | None:intergenic |
| AAGTGCAATAAGGAAGCTAA+AGG | 0.551734 | 5.1:+66696678 | MS.gene81672:CDS |
| GCAATAAGGAAGCTAAAGGT+AGG | 0.563127 | 5.1:+66696682 | MS.gene81672:CDS |
| CACGTCAACAAGAGGTGCCA+TGG | 0.566526 | 5.1:-66696766 | None:intergenic |
| GGGTGAAATATATGCAGCCA+TGG | 0.574934 | 5.1:+66696824 | MS.gene81672:CDS |
| TGAAAATGATGATCTAACTT+GGG | 0.580403 | 5.1:+66697685 | MS.gene81672:CDS |
| CATGCAATGGATGATGAAGT+TGG | 0.582948 | 5.1:-66696938 | None:intergenic |
| AATGTTGAGTTGGTTAAACA+TGG | 0.586870 | 5.1:+66696555 | MS.gene81672:CDS |
| GAATTATGGAGCAGAAACTC+CGG | 0.589304 | 5.1:+66697276 | MS.gene81672:CDS |
| TAGTAACCAGCAGCATGCAA+TGG | 0.590399 | 5.1:-66696951 | None:intergenic |
| TCCAAATTATTATGGTGAAG+AGG | 0.591275 | 5.1:+66697898 | MS.gene81672:CDS |
| AGATGATGATGATAATTGGT+TGG | 0.592842 | 5.1:+66697868 | MS.gene81672:CDS |
| TCTATGCAGTGTGCAGCACA+TGG | 0.592868 | 5.1:-66696408 | None:intergenic |
| ATCAAGTTGCCAATGCAAGT+GGG | 0.598161 | 5.1:+66697708 | MS.gene81672:CDS |
| GATCAAGTTGCCAATGCAAG+TGG | 0.601135 | 5.1:+66697707 | MS.gene81672:CDS |
| ATCATACTGAATGGTTAACA+GGG | 0.605897 | 5.1:+66697612 | MS.gene81672:CDS |
| TGGTTAAACATGGAGTCACA+AGG | 0.606856 | 5.1:+66696565 | MS.gene81672:CDS |
| TGATGATGATAATTGGTTGG+AGG | 0.612525 | 5.1:+66697871 | MS.gene81672:CDS |
| ATTCTTAGCACGTCAACAAG+AGG | 0.615152 | 5.1:-66696774 | None:intergenic |
| ACTCCACACTCTTAAGTCCA+TGG | 0.620572 | 5.1:+66696749 | MS.gene81672:CDS |
| TATTAGGGCAGAACGAGCAA+AGG | 0.625543 | 5.1:+66697763 | MS.gene81672:CDS |
| TACCAATATCTTCCAACATG+AGG | 0.628099 | 5.1:-66696431 | None:intergenic |
| TGCAGCCATGGATAATGCGA+AGG | 0.634019 | 5.1:+66696836 | MS.gene81672:CDS |
| TCAAGTTGCCAATGCAAGTG+GGG | 0.642208 | 5.1:+66697709 | MS.gene81672:CDS |
| TTAGGCTCAAAGCAAATGTG+TGG | 0.655077 | 5.1:-66696515 | None:intergenic |
| ATGAGCCTATAGTGAACACA+AGG | 0.672923 | 5.1:+66697735 | MS.gene81672:CDS |
| GTGCCATGGACTTAAGAGTG+TGG | 0.673069 | 5.1:-66696752 | None:intergenic |
| CATGGAGTCCAAAAGATGTG+AGG | 0.680155 | 5.1:-66696390 | None:intergenic |
| CCTTTGCAAAGTAAGAAATG+TGG | 0.689473 | 5.1:-66696595 | None:intergenic |
| AAAGATCCCAAATTGCTGAG+AGG | 0.691344 | 5.1:+66697014 | MS.gene81672:CDS |
| TAAAATCATACAACATCACG+GGG | 0.706865 | 5.1:-66697586 | None:intergenic |
| ACACTGCATAGACCTCATGT+TGG | 0.712729 | 5.1:+66696419 | MS.gene81672:CDS |
| TCATACTGAATGGTTAACAG+GGG | 0.727022 | 5.1:+66697613 | MS.gene81672:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAGGATATACAAAA+GGG | + | chr5.1:66696465-66696484 | MS.gene81672:CDS | 15.0% |
| !!! | AAAAATTTCAATTTTAATGC+AGG | + | chr5.1:66696870-66696889 | MS.gene81672:CDS | 15.0% |
| !!! | ATTTTAATTATCATACTGAA+TGG | + | chr5.1:66697603-66697622 | MS.gene81672:CDS | 15.0% |
| !! | ATTAAAATCATACAACATCA+CGG | - | chr5.1:66697591-66697610 | None:intergenic | 20.0% |
| !! | CAAAATCATTGATAAAAGAT+GGG | + | chr5.1:66696911-66696930 | MS.gene81672:CDS | 20.0% |
| !! | GATTAAAAAGGATATACAAA+AGG | + | chr5.1:66696464-66696483 | MS.gene81672:CDS | 20.0% |
| !! | TCAAAATCATTGATAAAAGA+TGG | + | chr5.1:66696910-66696929 | MS.gene81672:CDS | 20.0% |
| !! | TTAAAAAGGATATACAAAAG+GGG | + | chr5.1:66696466-66696485 | MS.gene81672:CDS | 20.0% |
| !!! | GGTTTACTATAAAAGTATTT+AGG | - | chr5.1:66696984-66697003 | None:intergenic | 20.0% |
| !!! | TATAAAAGTATTTAGGATTG+AGG | - | chr5.1:66696977-66696996 | None:intergenic | 20.0% |
| ! | ATGAAAATGATGATCTAACT+TGG | + | chr5.1:66697684-66697703 | MS.gene81672:CDS | 25.0% |
| ! | TAAGATTCCTAGGATTAAAA+AGG | + | chr5.1:66696452-66696471 | MS.gene81672:CDS | 25.0% |
| ! | TGAAAATGATGATCTAACTT+GGG | + | chr5.1:66697685-66697704 | MS.gene81672:CDS | 25.0% |
| ! | TTAAAATCATACAACATCAC+GGG | - | chr5.1:66697590-66697609 | None:intergenic | 25.0% |
| !! | AAGAAGATGATGATGATAAT+TGG | + | chr5.1:66697864-66697883 | MS.gene81672:CDS | 25.0% |
| !! | TGTATATCCTTTTTAATCCT+AGG | - | chr5.1:66696462-66696481 | None:intergenic | 25.0% |
| !! | TTTAGAGTATCTTACAATCT+TGG | + | chr5.1:66697419-66697438 | MS.gene81672:intron | 25.0% |
| !!! | AGATGTTTTTATGTGAAGAA+TGG | + | chr5.1:66696646-66696665 | MS.gene81672:CDS | 25.0% |
| AAGATATTGGTAAGATTCCT+AGG | + | chr5.1:66696442-66696461 | MS.gene81672:CDS | 30.0% | |
| AATGAGAAAAAACCTGCAAT+GGG | + | chr5.1:66696804-66696823 | MS.gene81672:CDS | 30.0% | |
| ACTTTGTGAATGTAATGAAG+TGG | + | chr5.1:66697058-66697077 | MS.gene81672:intron | 30.0% | |
| AGTACATCATTCCAAAATGA+TGG | - | chr5.1:66696732-66696751 | None:intergenic | 30.0% | |
| ATCATACTGAATGGTTAACA+GGG | + | chr5.1:66697612-66697631 | MS.gene81672:CDS | 30.0% | |
| GAGGATGATCCAAATTATTA+TGG | + | chr5.1:66697890-66697909 | MS.gene81672:CDS | 30.0% | |
| TAAAAACATCTCTCTAAGCT+TGG | - | chr5.1:66696637-66696656 | None:intergenic | 30.0% | |
| TAAAATCATACAACATCACG+GGG | - | chr5.1:66697589-66697608 | None:intergenic | 30.0% | |
| TAATGAGAAAAAACCTGCAA+TGG | + | chr5.1:66696803-66696822 | MS.gene81672:CDS | 30.0% | |
| TATCATACTGAATGGTTAAC+AGG | + | chr5.1:66697611-66697630 | MS.gene81672:CDS | 30.0% | |
| TCATGAACAAATTCTTCAAC+AGG | - | chr5.1:66697668-66697687 | None:intergenic | 30.0% | |
| TCCAAATTATTATGGTGAAG+AGG | + | chr5.1:66697898-66697917 | MS.gene81672:CDS | 30.0% | |
| TCCTCTTCACCATAATAATT+TGG | - | chr5.1:66697902-66697921 | None:intergenic | 30.0% | |
| TCTTGTCAAGACAATCATAT+CGG | - | chr5.1:66697562-66697581 | None:intergenic | 30.0% | |
| TTTAACCAACTCAACATTGT+TGG | - | chr5.1:66696553-66696572 | None:intergenic | 30.0% | |
| ! | AGATGATGATGATAATTGGT+TGG | + | chr5.1:66697868-66697887 | MS.gene81672:CDS | 30.0% |
| ! | GTATTTGTTGAAGATGTTGT+AGG | + | chr5.1:66697833-66697852 | MS.gene81672:CDS | 30.0% |
| !! | AATGTTGAGTTGGTTAAACA+TGG | + | chr5.1:66696555-66696574 | MS.gene81672:CDS | 30.0% |
| AAGTGCAATAAGGAAGCTAA+AGG | + | chr5.1:66696678-66696697 | MS.gene81672:CDS | 35.0% | |
| ATGATGACTATTTGGAGGAA+AGG | + | chr5.1:66697121-66697140 | MS.gene81672:intron | 35.0% | |
| CCACATTTCTTACTTTGCAA+AGG | + | chr5.1:66696595-66696614 | MS.gene81672:CDS | 35.0% | |
| CCTTTGCAAAGTAAGAAATG+TGG | - | chr5.1:66696598-66696617 | None:intergenic | 35.0% | |
| CTCAAGTTTACTTCTCTTCT+TGG | - | chr5.1:66697486-66697505 | None:intergenic | 35.0% | |
| GAAAACCAACAATGTTGAGT+TGG | + | chr5.1:66696545-66696564 | MS.gene81672:CDS | 35.0% | |
| GAAATGAACTTCCATTTACC+TGG | - | chr5.1:66697176-66697195 | None:intergenic | 35.0% | |
| TACCAATATCTTCCAACATG+AGG | - | chr5.1:66696434-66696453 | None:intergenic | 35.0% | |
| TCATACTGAATGGTTAACAG+GGG | + | chr5.1:66697613-66697632 | MS.gene81672:CDS | 35.0% | |
| TTGGGATCTTTCTCAATATC+TGG | - | chr5.1:66697005-66697024 | None:intergenic | 35.0% | |
| ! | AGAACAAACCTCACATCTTT+TGG | + | chr5.1:66696382-66696401 | MS.gene81672:CDS | 35.0% |
| ! | AGACTTGGTTACAACTTAGT+TGG | + | chr5.1:66697082-66697101 | MS.gene81672:intron | 35.0% |
| ! | GAACACAAGGACTAGTATTA+GGG | + | chr5.1:66697748-66697767 | MS.gene81672:CDS | 35.0% |
| ! | GACTTGGTTACAACTTAGTT+GGG | + | chr5.1:66697083-66697102 | MS.gene81672:intron | 35.0% |
| ! | TGAACACAAGGACTAGTATT+AGG | + | chr5.1:66697747-66697766 | MS.gene81672:CDS | 35.0% |
| ! | TGATGATGATAATTGGTTGG+AGG | + | chr5.1:66697871-66697890 | MS.gene81672:CDS | 35.0% |
| ! | TTTAGCTTCCTTATTGCACT+TGG | - | chr5.1:66696679-66696698 | None:intergenic | 35.0% |
| !!! | TGTTGGTTTTCTTCCTCATT+AGG | - | chr5.1:66696536-66696555 | None:intergenic | 35.0% |
| AAAGATCCCAAATTGCTGAG+AGG | + | chr5.1:66697014-66697033 | MS.gene81672:CDS | 40.0% | |
| AACCAAACTCAGCACTTTGA+TGG | - | chr5.1:66697317-66697336 | None:intergenic | 40.0% | |
| AACTCCGGATTTGACACTAA+TGG | + | chr5.1:66697291-66697310 | MS.gene81672:CDS | 40.0% | |
| ATGAGCCTATAGTGAACACA+AGG | + | chr5.1:66697735-66697754 | MS.gene81672:CDS | 40.0% | |
| ATGCAAACCTCTCAGCAATT+TGG | - | chr5.1:66697024-66697043 | None:intergenic | 40.0% | |
| ATGGCCATTAGTGTCAAATC+CGG | - | chr5.1:66697298-66697317 | None:intergenic | 40.0% | |
| ATGTAATGAAGTGGCAGACT+TGG | + | chr5.1:66697067-66697086 | MS.gene81672:intron | 40.0% | |
| ATTCTTAGCACGTCAACAAG+AGG | - | chr5.1:66696777-66696796 | None:intergenic | 40.0% | |
| CAAAACTGTCTCCAGGTAAA+TGG | + | chr5.1:66697162-66697181 | MS.gene81672:intron | 40.0% | |
| CAACTTAGTTGGGACAATAC+AGG | + | chr5.1:66697093-66697112 | MS.gene81672:intron | 40.0% | |
| CATATCGGTCTTTCAAAGCT+TGG | - | chr5.1:66697547-66697566 | None:intergenic | 40.0% | |
| CATGCAATGGATGATGAAGT+TGG | - | chr5.1:66696941-66696960 | None:intergenic | 40.0% | |
| CTAGTCCTTGTGTTCACTAT+AGG | - | chr5.1:66697743-66697762 | None:intergenic | 40.0% | |
| GAATTATGGAGCAGAAACTC+CGG | + | chr5.1:66697276-66697295 | MS.gene81672:CDS | 40.0% | |
| GACCTCATGTTGGAAGATAT+TGG | + | chr5.1:66696429-66696448 | MS.gene81672:CDS | 40.0% | |
| GCAATAAGGAAGCTAAAGGT+AGG | + | chr5.1:66696682-66696701 | MS.gene81672:CDS | 40.0% | |
| GCATATATTTCACCCATTGC+AGG | - | chr5.1:66696819-66696838 | None:intergenic | 40.0% | |
| GTTGAGTTCCAAGTGCAATA+AGG | + | chr5.1:66696668-66696687 | MS.gene81672:CDS | 40.0% | |
| TCTTGTTGACGTGCTAAGAA+TGG | + | chr5.1:66696776-66696795 | MS.gene81672:CDS | 40.0% | |
| TGCAAACCTCTCAGCAATTT+GGG | - | chr5.1:66697023-66697042 | None:intergenic | 40.0% | |
| TGGTTAAACATGGAGTCACA+AGG | + | chr5.1:66696565-66696584 | MS.gene81672:CDS | 40.0% | |
| TTAGGCTCAAAGCAAATGTG+TGG | - | chr5.1:66696518-66696537 | None:intergenic | 40.0% | |
| TTGTTCCTTCGCATTATCCA+TGG | - | chr5.1:66696844-66696863 | None:intergenic | 40.0% | |
| ! | ATCAAGTTGCCAATGCAAGT+GGG | + | chr5.1:66697708-66697727 | MS.gene81672:CDS | 40.0% |
| ! | CATTTGCTTTGAGCCTAATG+AGG | + | chr5.1:66696520-66696539 | MS.gene81672:CDS | 40.0% |
| !! | AGTTTGGTTTGTAGTGCTTC+AGG | + | chr5.1:66697328-66697347 | MS.gene81672:CDS | 40.0% |
| !! | TGTGTATTTTTGCAGCTGAG+TGG | + | chr5.1:66697248-66697267 | MS.gene81672:intron | 40.0% |
| ACACTGCATAGACCTCATGT+TGG | + | chr5.1:66696419-66696438 | MS.gene81672:CDS | 45.0% | |
| ACTCCACACTCTTAAGTCCA+TGG | + | chr5.1:66696749-66696768 | MS.gene81672:CDS | 45.0% | |
| AGGCGTGCATGATGACTATT+TGG | + | chr5.1:66697113-66697132 | MS.gene81672:intron | 45.0% | |
| CATGGAGTCCAAAAGATGTG+AGG | - | chr5.1:66696393-66696412 | None:intergenic | 45.0% | |
| CGTGCATGATGACTATTTGG+AGG | + | chr5.1:66697116-66697135 | MS.gene81672:intron | 45.0% | |
| CTCATTAACCCCACTTGCAT+TGG | - | chr5.1:66697720-66697739 | None:intergenic | 45.0% | |
| GCATCAGAAGTTGCAAGAGT+TGG | + | chr5.1:66697505-66697524 | MS.gene81672:CDS | 45.0% | |
| GGGTGAAATATATGCAGCCA+TGG | + | chr5.1:66696824-66696843 | MS.gene81672:CDS | 45.0% | |
| TAAGGAAGCTAAAGGTAGGC+AGG | + | chr5.1:66696686-66696705 | MS.gene81672:CDS | 45.0% | |
| TAGTAACCAGCAGCATGCAA+TGG | - | chr5.1:66696954-66696973 | None:intergenic | 45.0% | |
| TATTAGGGCAGAACGAGCAA+AGG | + | chr5.1:66697763-66697782 | MS.gene81672:CDS | 45.0% | |
| TGAATGGTTAACAGGGGAGA+TGG | + | chr5.1:66697619-66697638 | MS.gene81672:CDS | 45.0% | |
| ! | GATCAAGTTGCCAATGCAAG+TGG | + | chr5.1:66697707-66697726 | MS.gene81672:CDS | 45.0% |
| ! | GTGCACTTCTGCCATCATTT+TGG | + | chr5.1:66696718-66696737 | MS.gene81672:CDS | 45.0% |
| ! | TCAAGTTGCCAATGCAAGTG+GGG | + | chr5.1:66697709-66697728 | MS.gene81672:CDS | 45.0% |
| !! | CAAAAGGGGTGTTCTCTTGT+AGG | + | chr5.1:66696480-66696499 | MS.gene81672:CDS | 45.0% |
| !! | GCTGAGTGGTGGATGAATTA+TGG | + | chr5.1:66697262-66697281 | MS.gene81672:intron | 45.0% |
| !! | GTATTTTTGCAGCTGAGTGG+TGG | + | chr5.1:66697251-66697270 | MS.gene81672:intron | 45.0% |
| AACAGGGGAGATGGAAGAGA+TGG | + | chr5.1:66697628-66697647 | MS.gene81672:CDS | 50.0% | |
| ACAGGGGAGATGGAAGAGAT+GGG | + | chr5.1:66697629-66697648 | MS.gene81672:CDS | 50.0% | |
| ATGGAAGAGATGGGAGAGGA+TGG | + | chr5.1:66697638-66697657 | MS.gene81672:CDS | 50.0% | |
| CATCATCCATTGCATGCTGC+TGG | + | chr5.1:66696945-66696964 | MS.gene81672:CDS | 50.0% | |
| GTGCCATGGACTTAAGAGTG+TGG | - | chr5.1:66696755-66696774 | None:intergenic | 50.0% | |
| TCTATGCAGTGTGCAGCACA+TGG | - | chr5.1:66696411-66696430 | None:intergenic | 50.0% | |
| TGCAGCCATGGATAATGCGA+AGG | + | chr5.1:66696836-66696855 | MS.gene81672:CDS | 50.0% | |
| TTGGAGGAAAGGCAGCAGTA+AGG | + | chr5.1:66697132-66697151 | MS.gene81672:intron | 50.0% | |
| !! | GGCCATCAAAGTGCTGAGTT+TGG | + | chr5.1:66697312-66697331 | MS.gene81672:CDS | 50.0% |
| CTGCGGTCAAAACTGTCTCC+AGG | + | chr5.1:66697155-66697174 | MS.gene81672:intron | 55.0% | |
| CTTCAGGATGTGAGCGCAAC+TGG | + | chr5.1:66697344-66697363 | MS.gene81672:CDS | 55.0% | |
| GAAAGGCAGCAGTAAGGCTG+CGG | + | chr5.1:66697138-66697157 | MS.gene81672:intron | 55.0% | |
| GGAGATGGAAGAGATGGGAG+AGG | + | chr5.1:66697634-66697653 | MS.gene81672:CDS | 55.0% | |
| !! | CACGTCAACAAGAGGTGCCA+TGG | - | chr5.1:66696769-66696788 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 66696378 | 66697946 | 66696378 | ID=MS.gene81672 |
| chr5.1 | mRNA | 66696378 | 66697946 | 66696378 | ID=MS.gene81672.t1;Parent=MS.gene81672 |
| chr5.1 | exon | 66696378 | 66697035 | 66696378 | ID=MS.gene81672.t1.exon1;Parent=MS.gene81672.t1 |
| chr5.1 | CDS | 66696378 | 66697035 | 66696378 | ID=cds.MS.gene81672.t1;Parent=MS.gene81672.t1 |
| chr5.1 | exon | 66697263 | 66697381 | 66697263 | ID=MS.gene81672.t1.exon2;Parent=MS.gene81672.t1 |
| chr5.1 | CDS | 66697263 | 66697381 | 66697263 | ID=cds.MS.gene81672.t1;Parent=MS.gene81672.t1 |
| chr5.1 | exon | 66697476 | 66697946 | 66697476 | ID=MS.gene81672.t1.exon3;Parent=MS.gene81672.t1 |
| chr5.1 | CDS | 66697476 | 66697946 | 66697476 | ID=cds.MS.gene81672.t1;Parent=MS.gene81672.t1 |
| Gene Sequence |
| Protein sequence |
