Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81677.t1 | XP_003616827.2 | 97.4 | 423 | 11 | 0 | 1 | 423 | 72 | 494 | 3.10E-233 | 817.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81677.t1 | Q9MAU5 | 59.9 | 416 | 165 | 2 | 2 | 417 | 70 | 483 | 1.6e-145 | 517.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81677.t1 | G7K7F5 | 97.4 | 423 | 11 | 0 | 1 | 423 | 72 | 494 | 2.2e-233 | 817.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054467 | MS.gene81677 | 0.80334 | 3.65E-49 | -1.69E-46 |
| MS.gene060956 | MS.gene81677 | 0.808699 | 2.72E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81677.t1 | MTR_5g084690 | 97.400 | 423 | 11 | 0 | 1 | 423 | 72 | 494 | 0.0 | 836 |
| MS.gene81677.t1 | MTR_5g093980 | 49.173 | 423 | 211 | 3 | 1 | 423 | 67 | 485 | 2.09e-144 | 421 |
| MS.gene81677.t1 | MTR_3g054360 | 45.606 | 421 | 226 | 3 | 1 | 421 | 69 | 486 | 1.02e-124 | 370 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81677.t1 | AT1G04970 | 59.569 | 418 | 167 | 2 | 1 | 418 | 69 | 484 | 0.0 | 524 |
| MS.gene81677.t1 | AT1G04970 | 59.714 | 350 | 140 | 1 | 69 | 418 | 10 | 358 | 8.48e-156 | 444 |
| MS.gene81677.t1 | AT1G04970 | 59.714 | 350 | 140 | 1 | 69 | 418 | 10 | 358 | 8.48e-156 | 444 |
| MS.gene81677.t1 | AT3G20270 | 37.073 | 410 | 251 | 2 | 1 | 410 | 107 | 509 | 8.16e-100 | 307 |
| MS.gene81677.t1 | AT3G20270 | 37.073 | 410 | 251 | 2 | 1 | 410 | 107 | 509 | 8.16e-100 | 307 |
| MS.gene81677.t1 | AT3G20270 | 37.073 | 410 | 251 | 2 | 1 | 410 | 107 | 509 | 8.16e-100 | 307 |
| MS.gene81677.t1 | AT3G20270 | 37.073 | 410 | 251 | 2 | 1 | 410 | 314 | 716 | 6.29e-97 | 306 |
| MS.gene81677.t1 | AT3G20270 | 37.073 | 410 | 251 | 2 | 1 | 410 | 314 | 716 | 6.29e-97 | 306 |
| MS.gene81677.t1 | AT3G20270 | 36.769 | 359 | 220 | 2 | 1 | 359 | 107 | 458 | 4.78e-83 | 263 |
Find 90 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGAAGTTGAACTTAAAT+TGG | 0.156959 | 5.1:+66628311 | MS.gene81677:CDS |
| TAAAGATATTTCAATAAAAT+TGG | 0.163549 | 5.1:+66628392 | MS.gene81677:CDS |
| TTCAAGTTCATTTCATGATT+TGG | 0.181512 | 5.1:-66629210 | None:intergenic |
| GATGAATTTGTGCATAAAAT+TGG | 0.186810 | 5.1:-66628829 | None:intergenic |
| GGAATTGAGATTGTTGCTTC+TGG | 0.206164 | 5.1:+66627486 | MS.gene81677:CDS |
| TCGGGTTTGGTCAAAATAAA+TGG | 0.212372 | 5.1:+66630066 | MS.gene81677:CDS |
| GGAGAACCAGGAAGGATATT+TGG | 0.213932 | 5.1:+66628338 | MS.gene81677:CDS |
| TCTGCGAATGTTCCTTATTC+AGG | 0.262061 | 5.1:+66630158 | MS.gene81677:CDS |
| CTTATGAGTATAGTAGTATT+TGG | 0.262312 | 5.1:+66627538 | MS.gene81677:CDS |
| AATGCCTTCTCCAAGATTCT+TGG | 0.286219 | 5.1:-66628614 | None:intergenic |
| TCAATAATTGTCCACATAAC+TGG | 0.286728 | 5.1:-66630734 | None:intergenic |
| TCCTCAGATGATTCAAGCTT+CGG | 0.287755 | 5.1:+66630047 | MS.gene81677:intron |
| TCAAGTTCATTTCATGATTT+GGG | 0.290277 | 5.1:-66629209 | None:intergenic |
| AACATAAACCTACCTGAATA+AGG | 0.302925 | 5.1:-66630170 | None:intergenic |
| TAAGGTGAAACCGTGAATAA+TGG | 0.308080 | 5.1:-66630810 | None:intergenic |
| GGTTAGTTGTAATTTGAGTT+TGG | 0.343049 | 5.1:+66627509 | MS.gene81677:CDS |
| CTTAGATGTGCATTTGCATA+TGG | 0.343364 | 5.1:-66630770 | None:intergenic |
| TGAGATCCAAATATCCTTCC+TGG | 0.345049 | 5.1:-66628344 | None:intergenic |
| CCTCAGATGATTCAAGCTTC+GGG | 0.358629 | 5.1:+66630048 | MS.gene81677:intron |
| CCTGTTAAGGTTTCTGATCA+AGG | 0.372849 | 5.1:+66627567 | MS.gene81677:CDS |
| GAATTGAGATTGTTGCTTCT+GGG | 0.399939 | 5.1:+66627487 | MS.gene81677:CDS |
| TATTTGGTTTGGTCCTGTTA+AGG | 0.399972 | 5.1:+66627554 | MS.gene81677:CDS |
| ATGGAAGTTGAACTTAAATT+GGG | 0.400019 | 5.1:+66628312 | MS.gene81677:CDS |
| ACCATCAGATTGGGTGACTT+TGG | 0.403675 | 5.1:+66630105 | MS.gene81677:CDS |
| AAGTCTTCCGAAGGAGGTTC+CGG | 0.404869 | 5.1:+66628660 | MS.gene81677:CDS |
| ATATTTGGATCTCAAACTTA+AGG | 0.406500 | 5.1:+66628353 | MS.gene81677:CDS |
| TTCAGGCAAAATTTATGCAT+TGG | 0.412816 | 5.1:+66629106 | MS.gene81677:intron |
| AATGCTATCACCAAGAATCT+TGG | 0.412923 | 5.1:+66628604 | MS.gene81677:CDS |
| GATGATTCAAGCTTCGGGTT+TGG | 0.413464 | 5.1:+66630053 | MS.gene81677:intron |
| GATTATCTCTGCGTCTTGTA+AGG | 0.416518 | 5.1:-66630828 | None:intergenic |
| TGATCTGAAATCTCCACAAC+TGG | 0.423855 | 5.1:-66629252 | None:intergenic |
| AGTTGAACTTAAATTGGGAT+TGG | 0.424622 | 5.1:+66628317 | MS.gene81677:CDS |
| TCAAGGTTCAGCACAAGTTC+AGG | 0.426430 | 5.1:+66627584 | MS.gene81677:CDS |
| CCTTGATCAGAAACCTTAAC+AGG | 0.427898 | 5.1:-66627567 | None:intergenic |
| GAGTTCTTGTGGCAGAGGTT+AGG | 0.432697 | 5.1:-66628799 | None:intergenic |
| TTGTGGCAGAGGTTAGGAAT+AGG | 0.440618 | 5.1:-66628793 | None:intergenic |
| GTTGTAATTTGAGTTTGGAT+TGG | 0.444738 | 5.1:+66627514 | MS.gene81677:CDS |
| GGTGCATCTTGGCTTTATCA+AGG | 0.447248 | 5.1:+66628420 | MS.gene81677:CDS |
| AAGGTGAAACCGTGAATAAT+GGG | 0.450063 | 5.1:-66630809 | None:intergenic |
| TTATTATTCCTCAGTTGTAC+AGG | 0.451409 | 5.1:+66629181 | MS.gene81677:CDS |
| ACTTTGGAATGTCATTGAAA+TGG | 0.456473 | 5.1:+66630121 | MS.gene81677:CDS |
| TACTGAGTGAGTCGTCGATT+GGG | 0.463677 | 5.1:+66628728 | MS.gene81677:CDS |
| CGATTGGGTTTGAAACGAAT+GGG | 0.465684 | 5.1:+66628743 | MS.gene81677:CDS |
| ACCAGTAGCATGCATCTCAT+TGG | 0.482084 | 5.1:+66629338 | MS.gene81677:CDS |
| TCATTGACCGGAACCTCCTT+CGG | 0.485332 | 5.1:-66628667 | None:intergenic |
| GAGTATAGTAGTATTTGGTT+TGG | 0.487613 | 5.1:+66627543 | MS.gene81677:CDS |
| TTACTGAGTGAGTCGTCGAT+TGG | 0.487683 | 5.1:+66628727 | MS.gene81677:CDS |
| TCGATTGGGTTTGAAACGAA+TGG | 0.488846 | 5.1:+66628742 | MS.gene81677:CDS |
| CTCGTAGGTACCATCAGATT+GGG | 0.490558 | 5.1:+66630096 | MS.gene81677:CDS |
| CCTCGTAGGTACCATCAGAT+TGG | 0.492012 | 5.1:+66630095 | MS.gene81677:CDS |
| GATTCTTCTATTGTTAAGCC+TGG | 0.493921 | 5.1:+66627456 | MS.gene81677:CDS |
| GGTACAAGAATTCCAATGTT+GGG | 0.495246 | 5.1:+66627384 | None:intergenic |
| ACCAATGAGATGCATGCTAC+TGG | 0.496446 | 5.1:-66629339 | None:intergenic |
| TTACCCTTGCCCATTATTCA+CGG | 0.504910 | 5.1:+66630800 | MS.gene81677:CDS |
| GATATTTCAATAAAATTGGA+TGG | 0.510412 | 5.1:+66628396 | MS.gene81677:CDS |
| GCAAATGCACATCTAAGTAA+AGG | 0.513079 | 5.1:+66630776 | MS.gene81677:CDS |
| TTTGTCTTCTCCTCCAGTTG+TGG | 0.520132 | 5.1:+66629239 | MS.gene81677:CDS |
| AATTGAGATTGTTGCTTCTG+GGG | 0.524103 | 5.1:+66627488 | MS.gene81677:CDS |
| AAAATTTATGCATTGGATTG+TGG | 0.529740 | 5.1:+66629113 | MS.gene81677:CDS |
| CAATCTCTATTGAACACTGC+AGG | 0.538757 | 5.1:+66629150 | MS.gene81677:CDS |
| GTGCATCTTGGCTTTATCAA+GGG | 0.540311 | 5.1:+66628421 | MS.gene81677:CDS |
| AATTGGATGGTGGTGCATCT+TGG | 0.543201 | 5.1:+66628409 | MS.gene81677:CDS |
| ATTGTTAAGCCTGGTGAGAG+TGG | 0.546066 | 5.1:+66627465 | MS.gene81677:CDS |
| TCATTGAAATGGAGCAACAT+TGG | 0.550438 | 5.1:+66630132 | MS.gene81677:CDS |
| AATGAAGAGTGATCATTGAC+CGG | 0.551954 | 5.1:-66628679 | None:intergenic |
| TTTGAAAAGTCTTCCGAAGG+AGG | 0.555501 | 5.1:+66628654 | MS.gene81677:CDS |
| GTGTTCAATAGAGATTGATC+TGG | 0.560509 | 5.1:-66629144 | None:intergenic |
| GAGATTTCAGATCAGAAAGC+TGG | 0.566302 | 5.1:+66629261 | MS.gene81677:CDS |
| GGCAGAGGTTAGGAATAGGT+AGG | 0.566366 | 5.1:-66628789 | None:intergenic |
| ATCTTGGAGAAGGCATTACA+AGG | 0.578899 | 5.1:+66628620 | MS.gene81677:CDS |
| AACAGCCTCGTCTAAAGAGA+TGG | 0.579922 | 5.1:-66628863 | None:intergenic |
| ATCTCAATTCCACTCTCACC+AGG | 0.579964 | 5.1:-66627474 | None:intergenic |
| TAAATTGGGATTGGAGAACC+AGG | 0.581245 | 5.1:+66628326 | MS.gene81677:CDS |
| GCAGAGGTTAGGAATAGGTA+GGG | 0.583860 | 5.1:-66628788 | None:intergenic |
| CTCTATTGAACACTGCAGGA+TGG | 0.592149 | 5.1:+66629154 | MS.gene81677:CDS |
| TCCAAAGTCACCCAATCTGA+TGG | 0.597147 | 5.1:-66630106 | None:intergenic |
| ATCACCAAGAATCTTGGAGA+AGG | 0.605412 | 5.1:+66628610 | MS.gene81677:CDS |
| AAAACTTACATCATAATACA+AGG | 0.616369 | 5.1:-66628902 | None:intergenic |
| TCTGAAATCTCCACAACTGG+AGG | 0.617679 | 5.1:-66629249 | None:intergenic |
| ATAAATGGAAATAACCTCGT+AGG | 0.618799 | 5.1:+66630081 | MS.gene81677:CDS |
| GAAACCGTGAATAATGGGCA+AGG | 0.620384 | 5.1:-66630804 | None:intergenic |
| ATATTTGAAAAGTCTTCCGA+AGG | 0.620652 | 5.1:+66628651 | MS.gene81677:CDS |
| AAGTAAACACTACCCAACAT+TGG | 0.621139 | 5.1:-66627396 | None:intergenic |
| GGGTATTTCCTGTACAACTG+AGG | 0.624337 | 5.1:-66629189 | None:intergenic |
| ATTTCAATAAAATTGGATGG+TGG | 0.629003 | 5.1:+66628399 | MS.gene81677:CDS |
| TTGGGATTGGAGAACCAGGA+AGG | 0.639874 | 5.1:+66628330 | MS.gene81677:CDS |
| GATCTCAAACTTAAGGACTG+TGG | 0.659076 | 5.1:+66628360 | MS.gene81677:CDS |
| AAACCGTGAATAATGGGCAA+GGG | 0.659995 | 5.1:-66630803 | None:intergenic |
| GCTAGCCATCTCTTTAGACG+AGG | 0.696866 | 5.1:+66628858 | MS.gene81677:CDS |
| CCAATCTGATGGTACCTACG+AGG | 0.737067 | 5.1:-66630095 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGATATTTCAATAAAAT+TGG | + | chr5.1:66628392-66628411 | MS.gene81677:CDS | 10.0% |
| !! | AAAATAAAAAACACAAACAA+AGG | - | chr5.1:66627625-66627644 | None:intergenic | 15.0% |
| !! | TCATAAAAATGTAATGAAAA+GGG | + | chr5.1:66628253-66628272 | MS.gene81677:intron | 15.0% |
| !! | TTCATAAAAATGTAATGAAA+AGG | + | chr5.1:66628252-66628271 | MS.gene81677:intron | 15.0% |
| !!! | AATTTTATTTACTATGTCAT+TGG | + | chr5.1:66629048-66629067 | MS.gene81677:intron | 15.0% |
| !!! | GTTTGTGTTTTTTATTTTTT+GGG | + | chr5.1:66627627-66627646 | MS.gene81677:intron | 15.0% |
| !!! | TGTTTGTGTTTTTTATTTTT+TGG | + | chr5.1:66627626-66627645 | MS.gene81677:intron | 15.0% |
| !! | AAAAACATACACATAGATTA+TGG | - | chr5.1:66629399-66629418 | None:intergenic | 20.0% |
| !! | AAAACTTACATCATAATACA+AGG | - | chr5.1:66628905-66628924 | None:intergenic | 20.0% |
| !! | AACTTATGATGATTTATGAT+TGG | - | chr5.1:66630247-66630266 | None:intergenic | 20.0% |
| !! | ACATAATCTATTTATGATTG+TGG | + | chr5.1:66627713-66627732 | MS.gene81677:intron | 20.0% |
| !! | AGAAATGACAATTTATCATA+AGG | - | chr5.1:66629982-66630001 | None:intergenic | 20.0% |
| !! | ATTCTCTGAATATATTACTT+TGG | + | chr5.1:66629434-66629453 | MS.gene81677:intron | 20.0% |
| !! | GATATTTCAATAAAATTGGA+TGG | + | chr5.1:66628396-66628415 | MS.gene81677:CDS | 20.0% |
| !! | TAAAAAGATAGCTTATACAT+AGG | - | chr5.1:66627810-66627829 | None:intergenic | 20.0% |
| !! | TAATTAAGTTTATTCTCTCA+AGG | - | chr5.1:66627745-66627764 | None:intergenic | 20.0% |
| !! | TTGAATAAACATATAGTGTT+TGG | - | chr5.1:66629905-66629924 | None:intergenic | 20.0% |
| !!! | ATCATTAAATAAGTTGACAT+TGG | - | chr5.1:66628124-66628143 | None:intergenic | 20.0% |
| !!! | TTTTTAACAAAAGATAAGCA+GGG | + | chr5.1:66627824-66627843 | MS.gene81677:intron | 20.0% |
| ! | AAAATTTATGCATTGGATTG+TGG | + | chr5.1:66629113-66629132 | MS.gene81677:CDS | 25.0% |
| ! | AAGACGATTTAAAGATGATT+TGG | + | chr5.1:66627999-66628018 | MS.gene81677:intron | 25.0% |
| ! | ATATATTCAGAGAATCAGAA+TGG | - | chr5.1:66629429-66629448 | None:intergenic | 25.0% |
| ! | ATATTTGGATCTCAAACTTA+AGG | + | chr5.1:66628353-66628372 | MS.gene81677:CDS | 25.0% |
| ! | ATGGAAGTTGAACTTAAATT+GGG | + | chr5.1:66628312-66628331 | MS.gene81677:CDS | 25.0% |
| ! | ATTTCAATAAAATTGGATGG+TGG | + | chr5.1:66628399-66628418 | MS.gene81677:CDS | 25.0% |
| ! | CTTATGAGTATAGTAGTATT+TGG | + | chr5.1:66627538-66627557 | MS.gene81677:CDS | 25.0% |
| ! | GATGAATTTGTGCATAAAAT+TGG | - | chr5.1:66628832-66628851 | None:intergenic | 25.0% |
| ! | GTATGTATATATGTGTAGAA+TGG | + | chr5.1:66627653-66627672 | MS.gene81677:intron | 25.0% |
| ! | TACAAAATGTTGTGAATTAG+TGG | + | chr5.1:66629622-66629641 | MS.gene81677:intron | 25.0% |
| ! | TCAAGTTCATTTCATGATTT+GGG | - | chr5.1:66629212-66629231 | None:intergenic | 25.0% |
| ! | TCTATTTATGATTGTGGTTT+AGG | + | chr5.1:66627719-66627738 | MS.gene81677:intron | 25.0% |
| ! | TGGATAATGTAACTTATAGA+TGG | + | chr5.1:66628167-66628186 | MS.gene81677:intron | 25.0% |
| ! | TGTGACACATTTATTGATAT+TGG | + | chr5.1:66627952-66627971 | MS.gene81677:intron | 25.0% |
| ! | TTATTCACAATAGTCATGTT+TGG | - | chr5.1:66630655-66630674 | None:intergenic | 25.0% |
| !! | ATAGCAATTTGTTTGAATTC+TGG | - | chr5.1:66629580-66629599 | None:intergenic | 25.0% |
| !! | CTTTTTAACAAAAGATAAGC+AGG | + | chr5.1:66627823-66627842 | MS.gene81677:intron | 25.0% |
| !! | TAAATAAGTTGACATTGGTA+GGG | - | chr5.1:66628119-66628138 | None:intergenic | 25.0% |
| !! | TGATTTCATGTTTTTCTACA+TGG | + | chr5.1:66629809-66629828 | MS.gene81677:intron | 25.0% |
| !! | TTAAATAAGTTGACATTGGT+AGG | - | chr5.1:66628120-66628139 | None:intergenic | 25.0% |
| !! | TTCAAGTTCATTTCATGATT+TGG | - | chr5.1:66629213-66629232 | None:intergenic | 25.0% |
| !!! | AAGCTCTTTAAGATAGATTA+TGG | + | chr5.1:66630505-66630524 | MS.gene81677:intron | 25.0% |
| !!! | AATTTGATAAGTGCTGATTT+TGG | + | chr5.1:66628276-66628295 | MS.gene81677:intron | 25.0% |
| !!! | AGTTTTGATTCATATCTAAC+AGG | + | chr5.1:66628539-66628558 | MS.gene81677:intron | 25.0% |
| !!! | ATGATGTAAGTTTTGATGTT+TGG | + | chr5.1:66628911-66628930 | MS.gene81677:intron | 25.0% |
| !!! | GATAAATTGAAAAGTGCTTA+TGG | + | chr5.1:66627908-66627927 | MS.gene81677:intron | 25.0% |
| AAACATACCATATGTGTCTT+AGG | - | chr5.1:66630377-66630396 | None:intergenic | 30.0% | |
| AAACTTCTTTATGCTTTCAG+TGG | + | chr5.1:66630338-66630357 | MS.gene81677:intron | 30.0% | |
| AAATGAGCTAGAATCTGATA+TGG | - | chr5.1:66628461-66628480 | None:intergenic | 30.0% | |
| AACATAAACCTACCTGAATA+AGG | - | chr5.1:66630173-66630192 | None:intergenic | 30.0% | |
| AGTTGAACTTAAATTGGGAT+TGG | + | chr5.1:66628317-66628336 | MS.gene81677:CDS | 30.0% | |
| ATAAATGGAAATAACCTCGT+AGG | + | chr5.1:66630081-66630100 | MS.gene81677:CDS | 30.0% | |
| ATACACACATCAGTTAATCT+CGG | - | chr5.1:66628063-66628082 | None:intergenic | 30.0% | |
| ATATTTGAAAAGTCTTCCGA+AGG | + | chr5.1:66628651-66628670 | MS.gene81677:CDS | 30.0% | |
| CACATATGGTATGTTTGAAT+TGG | + | chr5.1:66630381-66630400 | MS.gene81677:intron | 30.0% | |
| CATGGAAGTTGAACTTAAAT+TGG | + | chr5.1:66628311-66628330 | MS.gene81677:CDS | 30.0% | |
| CCTGTGTTTAAATCTCAATA+CGG | + | chr5.1:66630292-66630311 | MS.gene81677:intron | 30.0% | |
| GAGTATAGTAGTATTTGGTT+TGG | + | chr5.1:66627543-66627562 | MS.gene81677:CDS | 30.0% | |
| TAAGATGTCTCATTGATGAA+GGG | + | chr5.1:66630687-66630706 | MS.gene81677:intron | 30.0% | |
| TCAATAATTGTCCACATAAC+TGG | - | chr5.1:66630737-66630756 | None:intergenic | 30.0% | |
| TTAAGATGTCTCATTGATGA+AGG | + | chr5.1:66630686-66630705 | MS.gene81677:intron | 30.0% | |
| TTATTATTCCTCAGTTGTAC+AGG | + | chr5.1:66629181-66629200 | MS.gene81677:CDS | 30.0% | |
| TTCAGGCAAAATTTATGCAT+TGG | + | chr5.1:66629106-66629125 | MS.gene81677:intron | 30.0% | |
| TTGTATTGCTGCACTAAATA+TGG | + | chr5.1:66628147-66628166 | MS.gene81677:intron | 30.0% | |
| ! | AATAAGTTTAAAACAGCTCC+TGG | - | chr5.1:66630480-66630499 | None:intergenic | 30.0% |
| ! | CAATTTGTTTGAATTCTGGT+AGG | - | chr5.1:66629576-66629595 | None:intergenic | 30.0% |
| ! | GGTTAGTTGTAATTTGAGTT+TGG | + | chr5.1:66627509-66627528 | MS.gene81677:CDS | 30.0% |
| ! | GTTGTAATTTGAGTTTGGAT+TGG | + | chr5.1:66627514-66627533 | MS.gene81677:CDS | 30.0% |
| ! | TGTGTGATTGAGAGATTTTA+TGG | + | chr5.1:66630436-66630455 | MS.gene81677:intron | 30.0% |
| ! | TTTTCGTATAAGCTATAAGC+TGG | + | chr5.1:66627855-66627874 | MS.gene81677:intron | 30.0% |
| !! | ACTTTGGAATGTCATTGAAA+TGG | + | chr5.1:66630121-66630140 | MS.gene81677:CDS | 30.0% |
| !! | ATTAATTATATGGGCTAGTG+TGG | + | chr5.1:66629489-66629508 | MS.gene81677:intron | 30.0% |
| !! | CTTCATCACTGATTTAAGAT+CGG | - | chr5.1:66627982-66628001 | None:intergenic | 30.0% |
| !! | TGAATTAGTGGCTTTAATAG+CGG | + | chr5.1:66629634-66629653 | MS.gene81677:intron | 30.0% |
| !!! | CTGCATGTTTTTTTAGATAC+CGG | + | chr5.1:66628083-66628102 | MS.gene81677:intron | 30.0% |
| !!! | TGCATGTTTTTTTAGATACC+GGG | + | chr5.1:66628084-66628103 | MS.gene81677:intron | 30.0% |
| AAACATCTTATGACATGTCC+AGG | + | chr5.1:66630459-66630478 | MS.gene81677:intron | 35.0% | |
| AAGACAGTGTTGTCAAATAG+CGG | + | chr5.1:66629536-66629555 | MS.gene81677:intron | 35.0% | |
| AAGGTGAAACCGTGAATAAT+GGG | - | chr5.1:66630812-66630831 | None:intergenic | 35.0% | |
| AATCACACAAGTGCTTATGT+TGG | - | chr5.1:66630425-66630444 | None:intergenic | 35.0% | |
| AATGAAGAGTGATCATTGAC+CGG | - | chr5.1:66628682-66628701 | None:intergenic | 35.0% | |
| AATGCTATCACCAAGAATCT+TGG | + | chr5.1:66628604-66628623 | MS.gene81677:CDS | 35.0% | |
| ATCATAAGGTGTACAGAGAT+GGG | - | chr5.1:66629968-66629987 | None:intergenic | 35.0% | |
| CCGTATTGAGATTTAAACAC+AGG | - | chr5.1:66630295-66630314 | None:intergenic | 35.0% | |
| CTTAGATGTGCATTTGCATA+TGG | - | chr5.1:66630773-66630792 | None:intergenic | 35.0% | |
| GAGAAATTGTTTCGATGTTC+AGG | + | chr5.1:66629089-66629108 | MS.gene81677:intron | 35.0% | |
| GATTCTTCTATTGTTAAGCC+TGG | + | chr5.1:66627456-66627475 | MS.gene81677:CDS | 35.0% | |
| GCAAATGCACATCTAAGTAA+AGG | + | chr5.1:66630776-66630795 | MS.gene81677:CDS | 35.0% | |
| GTGTTCAATAGAGATTGATC+TGG | - | chr5.1:66629147-66629166 | None:intergenic | 35.0% | |
| GTTGAATCCTAAGACACATA+TGG | + | chr5.1:66630367-66630386 | MS.gene81677:intron | 35.0% | |
| TAAGGTGAAACCGTGAATAA+TGG | - | chr5.1:66630813-66630832 | None:intergenic | 35.0% | |
| TATCATAAGGTGTACAGAGA+TGG | - | chr5.1:66629969-66629988 | None:intergenic | 35.0% | |
| TCATTGAAATGGAGCAACAT+TGG | + | chr5.1:66630132-66630151 | MS.gene81677:CDS | 35.0% | |
| ! | AATTGAGATTGTTGCTTCTG+GGG | + | chr5.1:66627488-66627507 | MS.gene81677:CDS | 35.0% |
| ! | AGGATTCTTGATGCTTTTGA+AGG | + | chr5.1:66628559-66628578 | MS.gene81677:intron | 35.0% |
| ! | CGTGGCAGAAAACAATTTTA+CGG | + | chr5.1:66628503-66628522 | MS.gene81677:intron | 35.0% |
| ! | GAATTGAGATTGTTGCTTCT+GGG | + | chr5.1:66627487-66627506 | MS.gene81677:CDS | 35.0% |
| ! | GGATTCTTGATGCTTTTGAA+GGG | + | chr5.1:66628560-66628579 | MS.gene81677:intron | 35.0% |
| ! | TCGGGTTTGGTCAAAATAAA+TGG | + | chr5.1:66630066-66630085 | MS.gene81677:CDS | 35.0% |
| !! | ATCACTGATTTAAGATCGGA+CGG | - | chr5.1:66627978-66627997 | None:intergenic | 35.0% |
| !! | GATGCTTTTGAAGGGAATAT+TGG | + | chr5.1:66628568-66628587 | MS.gene81677:CDS | 35.0% |
| !! | TATTTGGTTTGGTCCTGTTA+AGG | + | chr5.1:66627554-66627573 | MS.gene81677:CDS | 35.0% |
| !!! | GATAAGTGCTGATTTTGGAA+AGG | + | chr5.1:66628281-66628300 | MS.gene81677:intron | 35.0% |
| !!! | TTGGAAGTTTTGAGTTCTTG+TGG | - | chr5.1:66628813-66628832 | None:intergenic | 35.0% |
| !!! | TTTCATGTGTCACTTTTACG+TGG | + | chr5.1:66628485-66628504 | MS.gene81677:intron | 35.0% |
| !!! | TTTTTTAGATACCGGGAATC+TGG | + | chr5.1:66628091-66628110 | MS.gene81677:intron | 35.0% |
| AAGCTATCATACAGAACTCG+TGG | + | chr5.1:66627884-66627903 | MS.gene81677:intron | 40.0% | |
| AATCATCTGAGGAAACAGGA+TGG | - | chr5.1:66630040-66630059 | None:intergenic | 40.0% | |
| AATGCCTTCTCCAAGATTCT+TGG | - | chr5.1:66628617-66628636 | None:intergenic | 40.0% | |
| AGCCGAGCAATATCAATCAA+TGG | + | chr5.1:66628037-66628056 | MS.gene81677:intron | 40.0% | |
| ATCACCAAGAATCTTGGAGA+AGG | + | chr5.1:66628610-66628629 | MS.gene81677:CDS | 40.0% | |
| CAATCTCTATTGAACACTGC+AGG | + | chr5.1:66629150-66629169 | MS.gene81677:CDS | 40.0% | |
| CCTGTTAAGGTTTCTGATCA+AGG | + | chr5.1:66627567-66627586 | MS.gene81677:CDS | 40.0% | |
| CCTTGATCAGAAACCTTAAC+AGG | - | chr5.1:66627570-66627589 | None:intergenic | 40.0% | |
| CGAATGTTCCTTATTCAGGT+AGG | + | chr5.1:66630162-66630181 | MS.gene81677:intron | 40.0% | |
| CTTGAATCATCTGAGGAAAC+AGG | - | chr5.1:66630044-66630063 | None:intergenic | 40.0% | |
| GAGATTTCAGATCAGAAAGC+TGG | + | chr5.1:66629261-66629280 | MS.gene81677:CDS | 40.0% | |
| GATCTCAAACTTAAGGACTG+TGG | + | chr5.1:66628360-66628379 | MS.gene81677:CDS | 40.0% | |
| GATTATCTCTGCGTCTTGTA+AGG | - | chr5.1:66630831-66630850 | None:intergenic | 40.0% | |
| TAAATTGGGATTGGAGAACC+AGG | + | chr5.1:66628326-66628345 | MS.gene81677:CDS | 40.0% | |
| TCAGAGAATCAGAATGGTGA+AGG | - | chr5.1:66629423-66629442 | None:intergenic | 40.0% | |
| TCCTCAGATGATTCAAGCTT+CGG | + | chr5.1:66630047-66630066 | MS.gene81677:intron | 40.0% | |
| TCTGCGAATGTTCCTTATTC+AGG | + | chr5.1:66630158-66630177 | MS.gene81677:CDS | 40.0% | |
| TGAGATCCAAATATCCTTCC+TGG | - | chr5.1:66628347-66628366 | None:intergenic | 40.0% | |
| TTACCCTTGCCCATTATTCA+CGG | + | chr5.1:66630800-66630819 | MS.gene81677:CDS | 40.0% | |
| TTTGAAAAGTCTTCCGAAGG+AGG | + | chr5.1:66628654-66628673 | MS.gene81677:CDS | 40.0% | |
| ! | AAGACTTGCTCAAGAAGACT+GGG | + | chr5.1:66629691-66629710 | MS.gene81677:intron | 40.0% |
| ! | CGATTGGGTTTGAAACGAAT+GGG | + | chr5.1:66628743-66628762 | MS.gene81677:CDS | 40.0% |
| ! | GGAATTGAGATTGTTGCTTC+TGG | + | chr5.1:66627486-66627505 | MS.gene81677:CDS | 40.0% |
| ! | GGCCATTGATTGATATTGCT+CGG | - | chr5.1:66628042-66628061 | None:intergenic | 40.0% |
| ! | TCGATTGGGTTTGAAACGAA+TGG | + | chr5.1:66628742-66628761 | MS.gene81677:CDS | 40.0% |
| ! | TGATCTGAAATCTCCACAAC+TGG | - | chr5.1:66629255-66629274 | None:intergenic | 40.0% |
| !! | AAACCGTGAATAATGGGCAA+GGG | - | chr5.1:66630806-66630825 | None:intergenic | 40.0% |
| !! | AATTATATGGGCTAGTGTGG+TGG | + | chr5.1:66629492-66629511 | MS.gene81677:intron | 40.0% |
| !! | ATCTTGGAGAAGGCATTACA+AGG | + | chr5.1:66628620-66628639 | MS.gene81677:CDS | 40.0% |
| !! | GCTGATTTTGGAAAGGTTGA+AGG | + | chr5.1:66628288-66628307 | MS.gene81677:intron | 40.0% |
| !! | GTGCATCTTGGCTTTATCAA+GGG | + | chr5.1:66628421-66628440 | MS.gene81677:CDS | 40.0% |
| !! | TCTTGGCTTTATCAAGGGTA+TGG | + | chr5.1:66628426-66628445 | MS.gene81677:intron | 40.0% |
| !! | TTTTGGAAAGGTTGAAGGCA+TGG | + | chr5.1:66628293-66628312 | MS.gene81677:intron | 40.0% |
| AACAGCCTCGTCTAAAGAGA+TGG | - | chr5.1:66628866-66628885 | None:intergenic | 45.0% | |
| ACCAATGAGATGCATGCTAC+TGG | - | chr5.1:66629342-66629361 | None:intergenic | 45.0% | |
| ACCAGTAGCATGCATCTCAT+TGG | + | chr5.1:66629338-66629357 | MS.gene81677:CDS | 45.0% | |
| ACCATCAGATTGGGTGACTT+TGG | + | chr5.1:66630105-66630124 | MS.gene81677:CDS | 45.0% | |
| ATCTCAATTCCACTCTCACC+AGG | - | chr5.1:66627477-66627496 | None:intergenic | 45.0% | |
| ATTGTTAAGCCTGGTGAGAG+TGG | + | chr5.1:66627465-66627484 | MS.gene81677:CDS | 45.0% | |
| CATCAAACAGACAAGAGCTC+TGG | - | chr5.1:66628979-66628998 | None:intergenic | 45.0% | |
| CCTCAGATGATTCAAGCTTC+GGG | + | chr5.1:66630048-66630067 | MS.gene81677:intron | 45.0% | |
| CTCGTAGGTACCATCAGATT+GGG | + | chr5.1:66630096-66630115 | MS.gene81677:CDS | 45.0% | |
| CTCTATTGAACACTGCAGGA+TGG | + | chr5.1:66629154-66629173 | MS.gene81677:CDS | 45.0% | |
| GCAGAGGTTAGGAATAGGTA+GGG | - | chr5.1:66628791-66628810 | None:intergenic | 45.0% | |
| GCTCTTGTCTGTTTGATGTC+TGG | + | chr5.1:66628981-66629000 | MS.gene81677:intron | 45.0% | |
| GGAGAACCAGGAAGGATATT+TGG | + | chr5.1:66628338-66628357 | MS.gene81677:CDS | 45.0% | |
| GGGTATTTCCTGTACAACTG+AGG | - | chr5.1:66629192-66629211 | None:intergenic | 45.0% | |
| GTAGCATGCATCTCATTGGT+AGG | + | chr5.1:66629342-66629361 | MS.gene81677:intron | 45.0% | |
| TAGCACAAACCGCTATTCTC+TGG | + | chr5.1:66629660-66629679 | MS.gene81677:intron | 45.0% | |
| TCAAGGTTCAGCACAAGTTC+AGG | + | chr5.1:66627584-66627603 | MS.gene81677:CDS | 45.0% | |
| TCCAAAGTCACCCAATCTGA+TGG | - | chr5.1:66630109-66630128 | None:intergenic | 45.0% | |
| TTACTGAGTGAGTCGTCGAT+TGG | + | chr5.1:66628727-66628746 | MS.gene81677:CDS | 45.0% | |
| TTGTGGCAGAGGTTAGGAAT+AGG | - | chr5.1:66628796-66628815 | None:intergenic | 45.0% | |
| TTTGTCTTCTCCTCCAGTTG+TGG | + | chr5.1:66629239-66629258 | MS.gene81677:CDS | 45.0% | |
| ! | AATTGGATGGTGGTGCATCT+TGG | + | chr5.1:66628409-66628428 | MS.gene81677:CDS | 45.0% |
| ! | CAAGACTTGCTCAAGAAGAC+TGG | + | chr5.1:66629690-66629709 | MS.gene81677:intron | 45.0% |
| ! | GATGATTCAAGCTTCGGGTT+TGG | + | chr5.1:66630053-66630072 | MS.gene81677:intron | 45.0% |
| ! | TACTGAGTGAGTCGTCGATT+GGG | + | chr5.1:66628728-66628747 | MS.gene81677:CDS | 45.0% |
| ! | TCTGAAATCTCCACAACTGG+AGG | - | chr5.1:66629252-66629271 | None:intergenic | 45.0% |
| ! | TTTTCCTGCAGCCAGTTATG+TGG | + | chr5.1:66630723-66630742 | MS.gene81677:intron | 45.0% |
| !! | GAAACCGTGAATAATGGGCA+AGG | - | chr5.1:66630807-66630826 | None:intergenic | 45.0% |
| !! | GGTGCATCTTGGCTTTATCA+AGG | + | chr5.1:66628420-66628439 | MS.gene81677:CDS | 45.0% |
| !!! | GTTTTGAGTTCTTGTGGCAG+AGG | - | chr5.1:66628807-66628826 | None:intergenic | 45.0% |
| !! | TTAATTATGATTAATTATAT+GGG | + | chr5.1:66629480-66629499 | MS.gene81677:intron | 5.0% |
| !! | TTTAATTATGATTAATTATA+TGG | + | chr5.1:66629479-66629498 | MS.gene81677:intron | 5.0% |
| AAGTCTTCCGAAGGAGGTTC+CGG | + | chr5.1:66628660-66628679 | MS.gene81677:CDS | 50.0% | |
| CACAAACCGCTATTCTCTGG+CGG | + | chr5.1:66629663-66629682 | MS.gene81677:intron | 50.0% | |
| CCAATCTGATGGTACCTACG+AGG | - | chr5.1:66630098-66630117 | None:intergenic | 50.0% | |
| CCCGAAGCTTGAATCATCTG+AGG | - | chr5.1:66630051-66630070 | None:intergenic | 50.0% | |
| CCTCGTAGGTACCATCAGAT+TGG | + | chr5.1:66630095-66630114 | MS.gene81677:CDS | 50.0% | |
| GAGTTCTTGTGGCAGAGGTT+AGG | - | chr5.1:66628802-66628821 | None:intergenic | 50.0% | |
| GCTAGCCATCTCTTTAGACG+AGG | + | chr5.1:66628858-66628877 | MS.gene81677:CDS | 50.0% | |
| GGCAGAGGTTAGGAATAGGT+AGG | - | chr5.1:66628792-66628811 | None:intergenic | 50.0% | |
| TCATTGACCGGAACCTCCTT+CGG | - | chr5.1:66628670-66628689 | None:intergenic | 50.0% | |
| TGTCAACCGCCAGAGAATAG+CGG | - | chr5.1:66629672-66629691 | None:intergenic | 50.0% | |
| TTGGGATTGGAGAACCAGGA+AGG | + | chr5.1:66628330-66628349 | MS.gene81677:CDS | 50.0% | |
| TTGGTAGGGATCCAGATTCC+CGG | - | chr5.1:66628105-66628124 | None:intergenic | 50.0% | |
| TTGTCCACATAACTGGCTGC+AGG | - | chr5.1:66630730-66630749 | None:intergenic | 50.0% | |
| !! | CAGACAAGAGCTCTGGATCA+TGG | - | chr5.1:66628972-66628991 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 66627399 | 66630928 | 66627399 | ID=MS.gene81677 |
| chr5.1 | mRNA | 66627399 | 66630928 | 66627399 | ID=MS.gene81677.t1;Parent=MS.gene81677 |
| chr5.1 | exon | 66627399 | 66627605 | 66627399 | ID=MS.gene81677.t1.exon1;Parent=MS.gene81677.t1 |
| chr5.1 | CDS | 66627399 | 66627605 | 66627399 | ID=cds.MS.gene81677.t1;Parent=MS.gene81677.t1 |
| chr5.1 | exon | 66628303 | 66628442 | 66628303 | ID=MS.gene81677.t1.exon2;Parent=MS.gene81677.t1 |
| chr5.1 | CDS | 66628303 | 66628442 | 66628303 | ID=cds.MS.gene81677.t1;Parent=MS.gene81677.t1 |
| chr5.1 | exon | 66628561 | 66628915 | 66628561 | ID=MS.gene81677.t1.exon3;Parent=MS.gene81677.t1 |
| chr5.1 | CDS | 66628561 | 66628915 | 66628561 | ID=cds.MS.gene81677.t1;Parent=MS.gene81677.t1 |
| chr5.1 | exon | 66629111 | 66629359 | 66629111 | ID=MS.gene81677.t1.exon4;Parent=MS.gene81677.t1 |
| chr5.1 | CDS | 66629111 | 66629359 | 66629111 | ID=cds.MS.gene81677.t1;Parent=MS.gene81677.t1 |
| chr5.1 | exon | 66630054 | 66630179 | 66630054 | ID=MS.gene81677.t1.exon5;Parent=MS.gene81677.t1 |
| chr5.1 | CDS | 66630054 | 66630179 | 66630054 | ID=cds.MS.gene81677.t1;Parent=MS.gene81677.t1 |
| chr5.1 | exon | 66630734 | 66630928 | 66630734 | ID=MS.gene81677.t1.exon6;Parent=MS.gene81677.t1 |
| chr5.1 | CDS | 66630734 | 66630928 | 66630734 | ID=cds.MS.gene81677.t1;Parent=MS.gene81677.t1 |
| Gene Sequence |
| Protein sequence |
