Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81721.t1 | XP_013468026.1 | 96.6 | 968 | 33 | 0 | 1 | 968 | 1 | 968 | 0.00E+00 | 1666 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81721.t1 | A0A072VKV4 | 96.6 | 968 | 33 | 0 | 1 | 968 | 1 | 968 | 0.0e+00 | 1666.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056853 | MS.gene81721 | 0.874161 | 8.38E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81721.t1 | MTR_1g060580 | 96.694 | 968 | 32 | 0 | 1 | 968 | 1 | 968 | 0.0 | 1952 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81721.t1 | AT1G19485 | 42.358 | 916 | 398 | 24 | 57 | 955 | 3 | 805 | 0.0 | 638 |
| MS.gene81721.t1 | AT1G19485 | 42.358 | 916 | 398 | 24 | 57 | 955 | 3 | 805 | 0.0 | 638 |
Find 225 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATTGGTTCTCACAATT+TGG | 0.152126 | 1.3:-43934172 | None:intergenic |
| GTGAGAGATGGTTGTGCTTT+GGG | 0.208094 | 1.3:+43942550 | MS.gene81721:CDS |
| ATTAAACGCAATTCTGCTTT+TGG | 0.218518 | 1.3:-43942138 | None:intergenic |
| CTCTAATATTGATAAGAAAA+TGG | 0.221187 | 1.3:+43942611 | MS.gene81721:CDS |
| TGGTTCATCTTATCACAAAA+TGG | 0.221693 | 1.3:+43933730 | MS.gene81721:CDS |
| GATAATGAAAAGCCGGATTC+TGG | 0.225195 | 1.3:+43942456 | MS.gene81721:CDS |
| TATGGTGTCTTCTAAATATC+AGG | 0.232318 | 1.3:+43933786 | MS.gene81721:CDS |
| CCTCATGATTATTTACTTGC+TGG | 0.237869 | 1.3:+43937102 | MS.gene81721:CDS |
| AATAATGGCCTACTTGTATC+TGG | 0.238881 | 1.3:-43934466 | None:intergenic |
| TCTTTGTGATGGTGATAATA+TGG | 0.240883 | 1.3:+43942290 | MS.gene81721:CDS |
| TTATGCAATGCTGCCATCTT+AGG | 0.244199 | 1.3:-43942501 | None:intergenic |
| GACATGAAGGCCTCAAGTTT+TGG | 0.251482 | 1.3:+43939491 | MS.gene81721:CDS |
| TGTATTCGCAGCAGCTTTCT+TGG | 0.251698 | 1.3:-43934308 | None:intergenic |
| GTATGCAGAAGCAGCTTTCT+TGG | 0.268262 | 1.3:-43934380 | None:intergenic |
| AGTGAGAGATGGTTGTGCTT+TGG | 0.288593 | 1.3:+43942549 | MS.gene81721:CDS |
| CCTCTTTCTTGCAGCTTCAA+TGG | 0.294909 | 1.3:-43942083 | None:intergenic |
| GCATTCTTTCCCTTTGTATT+CGG | 0.294913 | 1.3:-43934358 | None:intergenic |
| ATTAGGTTTACTTACGGAAT+TGG | 0.296469 | 1.3:+43931739 | MS.gene81721:CDS |
| GGGCTATCTTGCTGTCTTGT+TGG | 0.306280 | 1.3:+43934684 | MS.gene81721:CDS |
| CGTATTCATCTTATGCCATT+TGG | 0.307057 | 1.3:+43941180 | MS.gene81721:CDS |
| GGCTATCTTGCTGTCTTGTT+GGG | 0.307911 | 1.3:+43934685 | MS.gene81721:CDS |
| CCAGACTGTAAATGATTCTC+TGG | 0.312361 | 1.3:-43940930 | None:intergenic |
| AATATCCATCTAAAAGCATT+AGG | 0.316447 | 1.3:+43931722 | MS.gene81721:CDS |
| AAAATGGGTGCCTCACTTAC+TGG | 0.325896 | 1.3:+43933746 | MS.gene81721:CDS |
| TTCTTCTTCCCCACAGAGTT+TGG | 0.336068 | 1.3:-43931080 | None:intergenic |
| TTTCTGCTACAGCTCAGTTT+TGG | 0.338281 | 1.3:-43942366 | None:intergenic |
| AACATTGAGCATTTGAATAC+AGG | 0.343917 | 1.3:-43936064 | None:intergenic |
| ATTTCTCCAGATGTAGTTCC+TGG | 0.344586 | 1.3:+43934232 | MS.gene81721:CDS |
| CTCTTTCTTGCAGCTTCAAT+GGG | 0.352650 | 1.3:-43942082 | None:intergenic |
| GAACAGTAAGAGGAACAAAT+TGG | 0.352749 | 1.3:-43934186 | None:intergenic |
| GAAATAAATTCAGCTGAATC+TGG | 0.353877 | 1.3:-43934214 | None:intergenic |
| CTGAGGAAGCATTGTCTTCT+CGG | 0.361974 | 1.3:+43942328 | MS.gene81721:CDS |
| GCAGAGGTGCTGTGCAAATA+TGG | 0.367593 | 1.3:+43933768 | MS.gene81721:CDS |
| TGCAGCCTTCGCCAAGCTAA+TGG | 0.372323 | 1.3:-43941093 | None:intergenic |
| TAAATAGTGTGGCAATAGTT+AGG | 0.374286 | 1.3:-43930862 | None:intergenic |
| CTTGTTGGGCAATGGATCTC+TGG | 0.375077 | 1.3:+43934699 | MS.gene81721:CDS |
| TTCTCACACTGAATCAATAA+TGG | 0.377014 | 1.3:-43934481 | None:intergenic |
| CTTTCCAGTGTATATCGTTC+CGG | 0.378783 | 1.3:-43941132 | None:intergenic |
| ATACTTGGATTCTTGAGGTT+TGG | 0.380840 | 1.3:-43932025 | None:intergenic |
| GTGTATATCGTTCCGGTGAC+AGG | 0.384153 | 1.3:-43941125 | None:intergenic |
| GCCCATGCAACTGTTCTAAT+AGG | 0.389486 | 1.3:-43938406 | None:intergenic |
| GTAGGTTGGATATTAATCAT+AGG | 0.390058 | 1.3:+43934428 | MS.gene81721:CDS |
| ACTATTAAGTTAGAAGTCTC+TGG | 0.395932 | 1.3:-43939460 | None:intergenic |
| CCAGAGAATCATTTACAGTC+TGG | 0.402777 | 1.3:+43940930 | MS.gene81721:CDS |
| GTTCAAGTGTCACCGATAAC+AGG | 0.413037 | 1.3:+43941206 | MS.gene81721:CDS |
| CCGAAAACAGTACCTGTTAT+CGG | 0.414337 | 1.3:-43941218 | None:intergenic |
| ACAAAGCCTATACTTTGTTT+CGG | 0.415181 | 1.3:+43938370 | MS.gene81721:CDS |
| GGGAAAGGAGAGTTTGATAC+TGG | 0.422684 | 1.3:-43942062 | None:intergenic |
| ATAATGAAAAGCCGGATTCT+GGG | 0.423357 | 1.3:+43942457 | MS.gene81721:CDS |
| TGATGGTGATAATATGGGTT+TGG | 0.424625 | 1.3:+43942296 | MS.gene81721:CDS |
| TTAGGTTTACTTACGGAATT+GGG | 0.426191 | 1.3:+43931740 | MS.gene81721:CDS |
| ATATCAAACAAAGAAACCTT+AGG | 0.426697 | 1.3:-43931019 | None:intergenic |
| GATGCTTGAGGTTCCAATAC+AGG | 0.430718 | 1.3:-43934532 | None:intergenic |
| GCTGTTGCTGCTCATCCGCC+TGG | 0.432574 | 1.3:+43933710 | MS.gene81721:CDS |
| CTTTGTGATGGTGATAATAT+GGG | 0.434640 | 1.3:+43942291 | MS.gene81721:CDS |
| CTTGCTGTCTTGTTGGGCAA+TGG | 0.437681 | 1.3:+43934691 | MS.gene81721:CDS |
| GAACTGCCAGGAACTACATC+TGG | 0.439083 | 1.3:-43934238 | None:intergenic |
| GTTCTGTATGGGCATTAGAT+TGG | 0.440759 | 1.3:+43932240 | MS.gene81721:CDS |
| GCAAGAGCTGTGCTTTCAGC+TGG | 0.441680 | 1.3:-43942396 | None:intergenic |
| ACCACATGGTAGCCCTGTAT+TGG | 0.442858 | 1.3:+43934519 | MS.gene81721:CDS |
| GCATCTGGTAGTGTCTCAAA+TGG | 0.442876 | 1.3:+43934046 | MS.gene81721:CDS |
| AGGTGGCATGGGATGTCAAA+TGG | 0.446867 | 1.3:+43934620 | MS.gene81721:CDS |
| TCACATTTAATTGAACAATC+AGG | 0.451414 | 1.3:-43932284 | None:intergenic |
| TAATGGACTTGTACGTTGTC+AGG | 0.453115 | 1.3:+43942578 | MS.gene81721:CDS |
| TTACTTGCTGGCTGCCATGA+TGG | 0.453345 | 1.3:+43937114 | MS.gene81721:CDS |
| AGCCTATACTTTGTTTCGGT+GGG | 0.453635 | 1.3:+43938374 | MS.gene81721:CDS |
| TGCAAAAGGAGGAGCAACTT+GGG | 0.454385 | 1.3:+43931998 | MS.gene81721:CDS |
| TCAGGCTCCCCATGCATCCT+AGG | 0.455090 | 1.3:-43932266 | None:intergenic |
| TTCATCTGCCACTGTTCCTA+AGG | 0.455578 | 1.3:+43931819 | MS.gene81721:CDS |
| ATTATCACTAACCCTTCAAA+AGG | 0.457036 | 1.3:-43938430 | None:intergenic |
| ATGCTACTCTTACCTGAAAA+CGG | 0.460532 | 1.3:-43941528 | None:intergenic |
| CGAGAATTTCTTTGAAGACA+TGG | 0.460588 | 1.3:+43931048 | MS.gene81721:CDS |
| AAAAGCATTAGGTTTACTTA+CGG | 0.463447 | 1.3:+43931733 | MS.gene81721:CDS |
| AGGAGCCTCAGAGGACGAAA+TGG | 0.465031 | 1.3:-43940898 | None:intergenic |
| CGACTTCCATTCTTTCTATG+TGG | 0.466917 | 1.3:+43941999 | MS.gene81721:CDS |
| CCACCTTTCCATTATGAGCT+AGG | 0.467563 | 1.3:-43934603 | None:intergenic |
| ATGCAAAAGGAGGAGCAACT+TGG | 0.467583 | 1.3:+43931997 | MS.gene81721:CDS |
| TCCTCATGCAAGCATCGAAT+GGG | 0.467596 | 1.3:+43934664 | MS.gene81721:CDS |
| GTGTCATGCCTAGCTCATAA+TGG | 0.467799 | 1.3:+43934595 | MS.gene81721:CDS |
| ATCATATCTCCCCGGGAAGA+AGG | 0.467886 | 1.3:+43933826 | MS.gene81721:CDS |
| GCTCTCAGTGCATGAGGAAG+AGG | 0.476909 | 1.3:-43935992 | None:intergenic |
| GGTTCATCTTATCACAAAAT+GGG | 0.477171 | 1.3:+43933731 | MS.gene81721:CDS |
| ACTGATCCACATAGAAAGAA+TGG | 0.482260 | 1.3:-43942005 | None:intergenic |
| TGAGAGATGGTTGTGCTTTG+GGG | 0.482698 | 1.3:+43942551 | MS.gene81721:CDS |
| GGGCATTAGATTGGTGTCCT+AGG | 0.483270 | 1.3:+43932249 | MS.gene81721:CDS |
| TCTGGAAGTTGAACAGTAAG+AGG | 0.486423 | 1.3:-43934196 | None:intergenic |
| CTCTTTGATATTAAATAGTG+TGG | 0.488495 | 1.3:-43930873 | None:intergenic |
| CTATCCACTGCTATTACAGT+TGG | 0.488965 | 1.3:-43933998 | None:intergenic |
| ATCTTAGGAGGAAAGACTTC+GGG | 0.492038 | 1.3:-43942486 | None:intergenic |
| TTCCCCACAGAGTTTGGCAA+TGG | 0.498095 | 1.3:-43931074 | None:intergenic |
| TCTTGTTGCAAGAAGTAGGT+TGG | 0.499166 | 1.3:+43934414 | MS.gene81721:CDS |
| CCATTGAAGCTGCAAGAAAG+AGG | 0.499192 | 1.3:+43942083 | MS.gene81721:CDS |
| TCGGGAGTAGTCCCAGAATC+CGG | 0.499534 | 1.3:-43942468 | None:intergenic |
| ATTGATTCAGTGTGAGAATG+AGG | 0.501894 | 1.3:+43934486 | MS.gene81721:CDS |
| TGAATGTTGGAGGTTCTGTA+TGG | 0.503920 | 1.3:+43932228 | MS.gene81721:CDS |
| TCAATTCCGGGAGTATTTGT+CGG | 0.504172 | 1.3:-43942435 | None:intergenic |
| ACAAATCGATAGAAATAAAG+AGG | 0.505265 | 1.3:+43933882 | MS.gene81721:CDS |
| GAATCATTTACAGTCTGGAT+TGG | 0.508798 | 1.3:+43940935 | MS.gene81721:CDS |
| TGATTCTCTGGGAAGGTTGG+AGG | 0.509208 | 1.3:-43940918 | None:intergenic |
| TCTTGCAGCTTCAATGGGAA+AGG | 0.509900 | 1.3:-43942077 | None:intergenic |
| CGAAGTCTTTCCTCCTAAGA+TGG | 0.511144 | 1.3:+43942488 | MS.gene81721:CDS |
| TTCCTATTAGAACAGTTGCA+TGG | 0.511742 | 1.3:+43938404 | MS.gene81721:CDS |
| AAGAAACAACCTTGGTTGCA+TGG | 0.512538 | 1.3:+43941152 | MS.gene81721:CDS |
| TGCAATGCTGCCATCTTAGG+AGG | 0.515229 | 1.3:-43942498 | None:intergenic |
| CTCATAATGGAAAGGTGGCA+TGG | 0.517043 | 1.3:+43934608 | MS.gene81721:CDS |
| TGAGGAAGCATTGTCTTCTC+GGG | 0.518917 | 1.3:+43942329 | MS.gene81721:CDS |
| TGACACTTGAACACTCCAAA+TGG | 0.520023 | 1.3:-43941195 | None:intergenic |
| AACAATGAAAACCATTAGCT+TGG | 0.520423 | 1.3:+43941082 | MS.gene81721:CDS |
| TATCAAACAAAGAAACCTTA+GGG | 0.521010 | 1.3:-43931018 | None:intergenic |
| ACAGCTCTTGCTTGTAGAGA+TGG | 0.522738 | 1.3:+43942408 | MS.gene81721:CDS |
| AAATGATTCTCTGGGAAGGT+TGG | 0.522935 | 1.3:-43940921 | None:intergenic |
| TAGGTTGGATATTAATCATA+GGG | 0.524008 | 1.3:+43934429 | MS.gene81721:CDS |
| AAACTCTTGTTGCAAGAAGT+AGG | 0.524383 | 1.3:+43934410 | MS.gene81721:CDS |
| AAAACGCTATCATCTCTTCA+AGG | 0.525511 | 1.3:-43942634 | None:intergenic |
| CGGAATTGATAATGAAAAGC+CGG | 0.531275 | 1.3:+43942449 | MS.gene81721:CDS |
| AAGCCTATACTTTGTTTCGG+TGG | 0.531447 | 1.3:+43938373 | MS.gene81721:CDS |
| CTTAGGGTTAGCACCACTGC+TGG | 0.532612 | 1.3:-43931002 | None:intergenic |
| ATTGGTGTCCTAGGATGCAT+GGG | 0.532952 | 1.3:+43932258 | MS.gene81721:CDS |
| TTCTTTCTAGGCCTTCCTCT+AGG | 0.533374 | 1.3:-43933905 | None:intergenic |
| CAAATTATACCGTTCCATCA+TGG | 0.534327 | 1.3:-43937128 | None:intergenic |
| TTCCTCATGCAAGCATCGAA+TGG | 0.535078 | 1.3:+43934663 | MS.gene81721:CDS |
| GGGACCAAGTACATAGCATC+TGG | 0.536684 | 1.3:+43934031 | MS.gene81721:CDS |
| ACTACCAGATGCTATGTACT+TGG | 0.537317 | 1.3:-43934035 | None:intergenic |
| GATTGGTGTCCTAGGATGCA+TGG | 0.541625 | 1.3:+43932257 | MS.gene81721:CDS |
| CAGCAGTGGTGCTAACCCTA+AGG | 0.543146 | 1.3:+43931003 | MS.gene81721:CDS |
| TCCTATTAGAACAGTTGCAT+GGG | 0.543628 | 1.3:+43938405 | MS.gene81721:CDS |
| AAACCATACTTGGATTCTTG+AGG | 0.544459 | 1.3:-43932030 | None:intergenic |
| TCAGGCATGGTTGCATATTG+TGG | 0.547666 | 1.3:+43941487 | MS.gene81721:intron |
| GCAAATGACCTCCCTGTCAC+CGG | 0.549534 | 1.3:+43941113 | MS.gene81721:CDS |
| AGAGACTTTGTGATGAATGT+TGG | 0.551861 | 1.3:+43932215 | MS.gene81721:intron |
| AAAGCTGCTGCGAATACAAA+GGG | 0.552131 | 1.3:+43934313 | MS.gene81721:CDS |
| TTTGTTGCAGCTCTTTGTGA+TGG | 0.553499 | 1.3:+43942279 | MS.gene81721:intron |
| AAAGCTGCTCCGAATACAAA+GGG | 0.553544 | 1.3:+43934349 | MS.gene81721:CDS |
| ATAATGGCCTACTTGTATCT+GGG | 0.555195 | 1.3:-43934465 | None:intergenic |
| CATCTGGTAGTGTCTCAAAT+GGG | 0.555891 | 1.3:+43934047 | MS.gene81721:CDS |
| TGCTGGCTGCCATGATGGAA+CGG | 0.557319 | 1.3:+43937119 | MS.gene81721:CDS |
| TTAAATGTGCAGAGAATGGA+AGG | 0.560081 | 1.3:+43931693 | MS.gene81721:intron |
| GCTACAGCGGCAAATGATGA+AGG | 0.560213 | 1.3:+43930965 | MS.gene81721:CDS |
| GTTGCATATTGTGGTGCAGA+TGG | 0.562993 | 1.3:+43941496 | MS.gene81721:CDS |
| GAGAGCAGTTTATACGCAGA+AGG | 0.563777 | 1.3:+43936009 | MS.gene81721:CDS |
| CATCTTAGGAGGAAAGACTT+CGG | 0.564444 | 1.3:-43942487 | None:intergenic |
| GCCTATACTTTGTTTCGGTG+GGG | 0.564923 | 1.3:+43938375 | MS.gene81721:CDS |
| AATTCTTCATCTAAATGTGA+TGG | 0.566247 | 1.3:+43938211 | MS.gene81721:CDS |
| GTTGTAGCCCAGATACAAGT+AGG | 0.566508 | 1.3:+43934458 | MS.gene81721:CDS |
| GACTTTGTGATGAATGTTGG+AGG | 0.568156 | 1.3:+43932218 | MS.gene81721:CDS |
| GAAAGCTGCTCCGAATACAA+AGG | 0.568270 | 1.3:+43934348 | MS.gene81721:CDS |
| TCCCCACCGAAACAAAGTAT+AGG | 0.572203 | 1.3:-43938376 | None:intergenic |
| AGCAGTTTATACGCAGAAGG+AGG | 0.573083 | 1.3:+43936012 | MS.gene81721:CDS |
| TGCTGATGATTCTGCTACAG+CGG | 0.574927 | 1.3:+43930952 | MS.gene81721:CDS |
| ACACCATTGCCAAACTCTGT+GGG | 0.575153 | 1.3:+43931071 | MS.gene81721:CDS |
| AGCAAGTAAATAATCATGAG+GGG | 0.577811 | 1.3:-43937100 | None:intergenic |
| CAGCATTGCATAAAGTGAGA+TGG | 0.578502 | 1.3:+43942511 | MS.gene81721:CDS |
| AAATAAAGAGGCCTAGAGGA+AGG | 0.580422 | 1.3:+43933894 | MS.gene81721:CDS |
| TGATGTTCATCAGAACTGCC+AGG | 0.583511 | 1.3:-43934250 | None:intergenic |
| GGTGCCTCACTTACTGGCAG+AGG | 0.584837 | 1.3:+43933752 | MS.gene81721:CDS |
| ACTGACCACTCCACTGTCAG+TGG | 0.585703 | 1.3:-43937072 | None:intergenic |
| TCATAATGGAAAGGTGGCAT+GGG | 0.586605 | 1.3:+43934609 | MS.gene81721:CDS |
| TGTATATCGTTCCGGTGACA+GGG | 0.587304 | 1.3:-43941124 | None:intergenic |
| AAGAAGTATCATATCTCCCC+GGG | 0.588430 | 1.3:+43933819 | MS.gene81721:CDS |
| CAGCAAGTAAATAATCATGA+GGG | 0.589131 | 1.3:-43937101 | None:intergenic |
| GAATCCAACTGTAATAGCAG+TGG | 0.589763 | 1.3:+43933994 | MS.gene81721:CDS |
| GAAAGCTGCTGCGAATACAA+AGG | 0.590265 | 1.3:+43934312 | MS.gene81721:CDS |
| CAGTGGATAGTACAAATTGT+GGG | 0.590541 | 1.3:+43934011 | MS.gene81721:CDS |
| ATGGTGTCTTCTAAATATCA+GGG | 0.592032 | 1.3:+43933787 | MS.gene81721:CDS |
| GACACCATTGCCAAACTCTG+TGG | 0.595970 | 1.3:+43931070 | MS.gene81721:CDS |
| CAGACTGTAAATGATTCTCT+GGG | 0.598089 | 1.3:-43940929 | None:intergenic |
| ATGCTTGAGGTTCCAATACA+GGG | 0.598484 | 1.3:-43934531 | None:intergenic |
| GGGTTTGGAATCTGTATCTG+AGG | 0.600826 | 1.3:+43942311 | MS.gene81721:CDS |
| GAAAACCATTAGCTTGGCGA+AGG | 0.602327 | 1.3:+43941088 | MS.gene81721:CDS |
| GCAAATGATGAAGGTGGTGG+TGG | 0.602662 | 1.3:+43930974 | MS.gene81721:CDS |
| TTGTATCAATTGCAGGTGGG+AGG | 0.602833 | 1.3:+43935967 | MS.gene81721:intron |
| TCAGCATAATATGCAAAAGG+AGG | 0.605517 | 1.3:+43931987 | MS.gene81721:intron |
| AAACAAGAGAGTAATGGAAG+AGG | 0.607256 | 1.3:+43930829 | None:intergenic |
| GAAGAAGTATCATATCTCCC+CGG | 0.607569 | 1.3:+43933818 | MS.gene81721:CDS |
| ATAGTAACCGCAGGACATGA+AGG | 0.613215 | 1.3:+43939478 | MS.gene81721:CDS |
| GTCACCGGAACGATATACAC+TGG | 0.613239 | 1.3:+43941128 | MS.gene81721:CDS |
| CTGTAAATGATTCTCTGGGA+AGG | 0.613421 | 1.3:-43940925 | None:intergenic |
| GAGGAATCAAGATTGCTAAG+AGG | 0.614969 | 1.3:-43934646 | None:intergenic |
| TCAGCTAACAACTAAATCAG+TGG | 0.616202 | 1.3:+43941956 | MS.gene81721:intron |
| CCAGCAAGTAAATAATCATG+AGG | 0.616229 | 1.3:-43937102 | None:intergenic |
| CCTAGCTCATAATGGAAAGG+TGG | 0.620737 | 1.3:+43934603 | MS.gene81721:CDS |
| GCAGTTTATACGCAGAAGGA+GGG | 0.621415 | 1.3:+43936013 | MS.gene81721:CDS |
| AGCACCTCTGCCAGTAAGTG+AGG | 0.622420 | 1.3:-43933756 | None:intergenic |
| GCAGTGGATAGTACAAATTG+TGG | 0.626003 | 1.3:+43934010 | MS.gene81721:CDS |
| GAGAGATGGTTGTGCTTTGG+GGG | 0.626750 | 1.3:+43942552 | MS.gene81721:CDS |
| ATGCCTAGCTCATAATGGAA+AGG | 0.628963 | 1.3:+43934600 | MS.gene81721:CDS |
| TGATTGTTCAATTAAATGTG+AGG | 0.630368 | 1.3:+43932286 | MS.gene81721:CDS |
| TTAACAAGGGTAGTGAGAGA+TGG | 0.634556 | 1.3:+43942538 | MS.gene81721:CDS |
| GCCCATTCGATGCTTGCATG+AGG | 0.635290 | 1.3:-43934665 | None:intergenic |
| TAAACTGCTCTCAGTGCATG+AGG | 0.635449 | 1.3:-43935998 | None:intergenic |
| TCACAGCATTCCACTGACAG+TGG | 0.636573 | 1.3:+43937062 | MS.gene81721:intron |
| GTAATCCATTTCGTCCTCTG+AGG | 0.636836 | 1.3:+43940893 | MS.gene81721:intron |
| GCTAGGCATGACACAACTCT+AGG | 0.637150 | 1.3:-43934586 | None:intergenic |
| CTTGAGGCCTTCATGTCCTG+CGG | 0.638879 | 1.3:-43939485 | None:intergenic |
| ATGTGGATCAGTGACTGAAG+AGG | 0.639441 | 1.3:+43942016 | MS.gene81721:CDS |
| GGTGCGCCGACAAATACTCC+CGG | 0.640694 | 1.3:+43942429 | MS.gene81721:CDS |
| GAATGTTGGAGGTTCTGTAT+GGG | 0.641333 | 1.3:+43932229 | MS.gene81721:CDS |
| TCTAACTTAATAGTAACCGC+AGG | 0.643606 | 1.3:+43939469 | MS.gene81721:CDS |
| ATGGGACAAGTAGATGCTTG+AGG | 0.647867 | 1.3:-43934544 | None:intergenic |
| GCAAAAGGAGGAGCAACTTG+GGG | 0.648508 | 1.3:+43931999 | MS.gene81721:CDS |
| ACACTGGAAAGAAACAACCT+TGG | 0.652297 | 1.3:+43941144 | MS.gene81721:CDS |
| ATAGAAATAAAGAGGCCTAG+AGG | 0.655432 | 1.3:+43933890 | MS.gene81721:CDS |
| GTGAGATGGAACATTAACAA+GGG | 0.656102 | 1.3:+43942525 | MS.gene81721:CDS |
| GAAGGTTGGAGGAGCCTCAG+AGG | 0.658311 | 1.3:-43940907 | None:intergenic |
| TGGATTGGCAGTCAAAGCCA+AGG | 0.660146 | 1.3:+43940950 | MS.gene81721:CDS |
| AGTGAGATGGAACATTAACA+AGG | 0.663871 | 1.3:+43942524 | MS.gene81721:CDS |
| TACGTAGTACCATGCAACCA+AGG | 0.666142 | 1.3:-43941161 | None:intergenic |
| GCGGCAAATGATGAAGGTGG+TGG | 0.666480 | 1.3:+43930971 | MS.gene81721:CDS |
| GCATTCCACTGACAGTGGAG+TGG | 0.668981 | 1.3:+43937067 | MS.gene81721:intron |
| GGTGGTGGTAGTACCAGCAG+TGG | 0.670189 | 1.3:+43930989 | MS.gene81721:CDS |
| GCAAGTAAATAATCATGAGG+GGG | 0.677289 | 1.3:-43937099 | None:intergenic |
| TGGCATGGGATGTCAAATGG+AGG | 0.678240 | 1.3:+43934623 | MS.gene81721:CDS |
| GACTTGTACCTTAGGAACAG+TGG | 0.679559 | 1.3:-43931827 | None:intergenic |
| CACCATTGCCAAACTCTGTG+GGG | 0.682548 | 1.3:+43931072 | MS.gene81721:CDS |
| TGAAACGTGGCAGCTTACAG+AGG | 0.684971 | 1.3:+43936086 | MS.gene81721:CDS |
| TCCAATACAGGGCTACCATG+TGG | 0.685481 | 1.3:-43934520 | None:intergenic |
| TTTATATGTAGGTTGCTCTG+TGG | 0.688819 | 1.3:+43938176 | MS.gene81721:intron |
| GAGGCAAATCATCAACCACA+TGG | 0.705993 | 1.3:+43934505 | MS.gene81721:CDS |
| AAATGCTCAATGTTGAAACG+TGG | 0.713740 | 1.3:+43936073 | MS.gene81721:CDS |
| TTGGTGTCCTAGGATGCATG+GGG | 0.719461 | 1.3:+43932259 | MS.gene81721:CDS |
| ACCGTAGGTCCCAAAACTTG+AGG | 0.731840 | 1.3:-43939501 | None:intergenic |
| TTGTGATAAGATGAACCAGG+CGG | 0.737973 | 1.3:-43933725 | None:intergenic |
| ACAGCGGCAAATGATGAAGG+TGG | 0.745146 | 1.3:+43930968 | MS.gene81721:CDS |
| ATATCGTTCCGGTGACAGGG+AGG | 0.770381 | 1.3:-43941121 | None:intergenic |
| ACAGTGGCAGATGAAAACTG+AGG | 0.800494 | 1.3:-43931811 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 43930842 | 43942647 | 43930842 | ID=MS.gene81721 |
| chr1.3 | mRNA | 43930842 | 43942647 | 43930842 | ID=MS.gene81721.t1;Parent=MS.gene81721 |
| chr1.3 | exon | 43930842 | 43931164 | 43930842 | ID=MS.gene81721.t1.exon1;Parent=MS.gene81721.t1 |
| chr1.3 | CDS | 43930842 | 43931164 | 43930842 | ID=cds.MS.gene81721.t1;Parent=MS.gene81721.t1 |
| chr1.3 | exon | 43931705 | 43931840 | 43931705 | ID=MS.gene81721.t1.exon2;Parent=MS.gene81721.t1 |
| chr1.3 | CDS | 43931705 | 43931840 | 43931705 | ID=cds.MS.gene81721.t1;Parent=MS.gene81721.t1 |
| chr1.3 | exon | 43931991 | 43932043 | 43931991 | ID=MS.gene81721.t1.exon3;Parent=MS.gene81721.t1 |
| chr1.3 | CDS | 43931991 | 43932043 | 43931991 | ID=cds.MS.gene81721.t1;Parent=MS.gene81721.t1 |
| chr1.3 | exon | 43932217 | 43932307 | 43932217 | ID=MS.gene81721.t1.exon4;Parent=MS.gene81721.t1 |
| chr1.3 | CDS | 43932217 | 43932307 | 43932217 | ID=cds.MS.gene81721.t1;Parent=MS.gene81721.t1 |
| chr1.3 | exon | 43933704 | 43934725 | 43933704 | ID=MS.gene81721.t1.exon5;Parent=MS.gene81721.t1 |
| chr1.3 | CDS | 43933704 | 43934725 | 43933704 | ID=cds.MS.gene81721.t1;Parent=MS.gene81721.t1 |
| chr1.3 | exon | 43935982 | 43936107 | 43935982 | ID=MS.gene81721.t1.exon6;Parent=MS.gene81721.t1 |
| chr1.3 | CDS | 43935982 | 43936107 | 43935982 | ID=cds.MS.gene81721.t1;Parent=MS.gene81721.t1 |
| chr1.3 | exon | 43937068 | 43937140 | 43937068 | ID=MS.gene81721.t1.exon7;Parent=MS.gene81721.t1 |
| chr1.3 | CDS | 43937068 | 43937140 | 43937068 | ID=cds.MS.gene81721.t1;Parent=MS.gene81721.t1 |
| chr1.3 | exon | 43938187 | 43938232 | 43938187 | ID=MS.gene81721.t1.exon8;Parent=MS.gene81721.t1 |
| chr1.3 | CDS | 43938187 | 43938232 | 43938187 | ID=cds.MS.gene81721.t1;Parent=MS.gene81721.t1 |
| chr1.3 | exon | 43938368 | 43938440 | 43938368 | ID=MS.gene81721.t1.exon9;Parent=MS.gene81721.t1 |
| chr1.3 | CDS | 43938368 | 43938440 | 43938368 | ID=cds.MS.gene81721.t1;Parent=MS.gene81721.t1 |
| chr1.3 | exon | 43939456 | 43939521 | 43939456 | ID=MS.gene81721.t1.exon10;Parent=MS.gene81721.t1 |
| chr1.3 | CDS | 43939456 | 43939521 | 43939456 | ID=cds.MS.gene81721.t1;Parent=MS.gene81721.t1 |
| chr1.3 | exon | 43940894 | 43940971 | 43940894 | ID=MS.gene81721.t1.exon11;Parent=MS.gene81721.t1 |
| chr1.3 | CDS | 43940894 | 43940971 | 43940894 | ID=cds.MS.gene81721.t1;Parent=MS.gene81721.t1 |
| chr1.3 | exon | 43941055 | 43941227 | 43941055 | ID=MS.gene81721.t1.exon12;Parent=MS.gene81721.t1 |
| chr1.3 | CDS | 43941055 | 43941227 | 43941055 | ID=cds.MS.gene81721.t1;Parent=MS.gene81721.t1 |
| chr1.3 | exon | 43941491 | 43941537 | 43941491 | ID=MS.gene81721.t1.exon13;Parent=MS.gene81721.t1 |
| chr1.3 | CDS | 43941491 | 43941537 | 43941491 | ID=cds.MS.gene81721.t1;Parent=MS.gene81721.t1 |
| chr1.3 | exon | 43941960 | 43942200 | 43941960 | ID=MS.gene81721.t1.exon14;Parent=MS.gene81721.t1 |
| chr1.3 | CDS | 43941960 | 43942200 | 43941960 | ID=cds.MS.gene81721.t1;Parent=MS.gene81721.t1 |
| chr1.3 | exon | 43942289 | 43942647 | 43942289 | ID=MS.gene81721.t1.exon15;Parent=MS.gene81721.t1 |
| chr1.3 | CDS | 43942289 | 43942647 | 43942289 | ID=cds.MS.gene81721.t1;Parent=MS.gene81721.t1 |
| Gene Sequence |
| Protein sequence |
