Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82242.t1 | RHN59424.1 | 91.1 | 549 | 26 | 2 | 1 | 527 | 72 | 619 | 1.40E-187 | 666 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82242.t1 | F4ISY0 | 38.6 | 490 | 229 | 10 | 16 | 477 | 23 | 468 | 6.0e-41 | 170.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82242.t1 | A0A072UHR5 | 91.1 | 549 | 26 | 2 | 1 | 527 | 7 | 554 | 1.0e-187 | 666.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052732 | MS.gene82242 | 0.803926 | 2.76E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene82242 | 0.809188 | 2.14E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene82242 | 0.816745 | 4.72E-52 | -1.69E-46 |
| MS.gene055537 | MS.gene82242 | 0.805841 | 1.10E-49 | -1.69E-46 |
| MS.gene059154 | MS.gene82242 | 0.810805 | 9.60E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82242.t1 | MTR_4g029090 | 90.893 | 549 | 27 | 2 | 1 | 527 | 7 | 554 | 0.0 | 904 |
| MS.gene82242.t1 | MTR_7g072550 | 62.787 | 567 | 159 | 13 | 5 | 527 | 12 | 570 | 0.0 | 603 |
| MS.gene82242.t1 | MTR_3g072350 | 37.031 | 586 | 278 | 12 | 6 | 520 | 13 | 578 | 5.95e-79 | 258 |
| MS.gene82242.t1 | MTR_5g083980 | 36.581 | 544 | 288 | 13 | 6 | 520 | 19 | 534 | 2.53e-65 | 221 |
| MS.gene82242.t1 | MTR_3g072350 | 38.037 | 489 | 226 | 10 | 6 | 418 | 13 | 500 | 4.04e-65 | 220 |
| MS.gene82242.t1 | MTR_3g101660 | 31.193 | 327 | 210 | 6 | 137 | 455 | 594 | 913 | 3.12e-32 | 132 |
| MS.gene82242.t1 | MTR_1g019490 | 31.677 | 322 | 204 | 4 | 80 | 396 | 528 | 838 | 4.30e-26 | 113 |
| MS.gene82242.t1 | MTR_8g070840 | 29.114 | 395 | 230 | 8 | 20 | 396 | 187 | 549 | 2.16e-17 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82242.t1 | AT2G38370 | 45.920 | 527 | 211 | 12 | 16 | 513 | 23 | 504 | 1.63e-109 | 336 |
| MS.gene82242.t1 | AT2G38370 | 45.920 | 527 | 211 | 12 | 16 | 513 | 40 | 521 | 1.97e-109 | 337 |
| MS.gene82242.t1 | AT2G40480 | 38.951 | 534 | 239 | 18 | 8 | 520 | 48 | 515 | 3.41e-71 | 236 |
| MS.gene82242.t1 | AT3G51720 | 35.659 | 516 | 185 | 14 | 12 | 513 | 6 | 388 | 1.29e-59 | 202 |
| MS.gene82242.t1 | AT3G56270 | 34.852 | 439 | 219 | 11 | 15 | 445 | 41 | 420 | 2.86e-40 | 151 |
| MS.gene82242.t1 | AT2G26570 | 33.133 | 332 | 208 | 5 | 69 | 396 | 408 | 729 | 4.82e-33 | 134 |
| MS.gene82242.t1 | AT2G26570 | 33.133 | 332 | 208 | 5 | 69 | 396 | 408 | 729 | 4.82e-33 | 134 |
| MS.gene82242.t1 | AT4G33390 | 35.766 | 274 | 171 | 2 | 137 | 406 | 459 | 731 | 4.05e-27 | 116 |
| MS.gene82242.t1 | AT5G42880 | 30.597 | 268 | 157 | 3 | 137 | 397 | 423 | 668 | 7.01e-20 | 94.0 |
| MS.gene82242.t1 | AT1G45545 | 29.167 | 264 | 179 | 4 | 145 | 402 | 424 | 685 | 2.11e-16 | 83.2 |
| MS.gene82242.t1 | AT1G45545 | 29.167 | 264 | 179 | 4 | 145 | 402 | 425 | 686 | 2.29e-16 | 82.8 |
Find 93 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCAGAACATTTCAAGAAAA+TGG | 0.171368 | 4.2:+74933163 | MS.gene82242:CDS |
| TCTCGGTTATTCGACATAAA+TGG | 0.209688 | 4.2:+74933710 | MS.gene82242:CDS |
| CGAAGCAAATGTATCGAAAA+TGG | 0.273101 | 4.2:+74933484 | MS.gene82242:CDS |
| TCTCTGGCATCATCAGTTTC+CGG | 0.279858 | 4.2:-74933802 | None:intergenic |
| TTGAAGAGGCTTTAAGAAAA+TGG | 0.291438 | 4.2:+74933615 | MS.gene82242:CDS |
| TCTGCTAAGAGAAAGAAATT+TGG | 0.309514 | 4.2:+74933965 | MS.gene82242:CDS |
| AGAGCTTGATGCTGGAAAAT+TGG | 0.325183 | 4.2:+74932599 | MS.gene82242:CDS |
| AAGAGAAAGAAATTTGGTTT+TGG | 0.353841 | 4.2:+74933971 | MS.gene82242:CDS |
| CCTGCAGTTTAAGTCTTGTT+TGG | 0.360526 | 4.2:-74933061 | None:intergenic |
| GAAGGCTCTTGAAGAAGCTT+TGG | 0.361979 | 4.2:+74933556 | MS.gene82242:CDS |
| GGTGGTGAACCGGGTTGAAC+CGG | 0.365920 | 4.2:+74931394 | MS.gene82242:CDS |
| TAAACCTGGATTCGCCGAAT+TGG | 0.369316 | 4.2:-74932853 | None:intergenic |
| TTGAAGCTCTTTCGTAATAT+CGG | 0.374582 | 4.2:-74933126 | None:intergenic |
| CTGAAGCTATGGTGGTGAAC+CGG | 0.383555 | 4.2:+74931384 | None:intergenic |
| CTCGGCAAGTGCAGCTGCTT+CGG | 0.385931 | 4.2:-74933309 | None:intergenic |
| GGAGGAACAAGCAGTGGAAT+TGG | 0.401433 | 4.2:+74932620 | MS.gene82242:CDS |
| GTTGAATTTATGTGAAGATA+AGG | 0.409398 | 4.2:+74932776 | MS.gene82242:CDS |
| AGTCGGCTTTAGAACTGGTT+TGG | 0.412171 | 4.2:-74933756 | None:intergenic |
| CAGCGATATCGTTTGTTGTT+CGG | 0.413542 | 4.2:-74932914 | None:intergenic |
| TGACGGGGATTGTGTGGAAA+AGG | 0.419671 | 4.2:+74933352 | MS.gene82242:CDS |
| CCTTCCAATTCGGCGAATCC+AGG | 0.426962 | 4.2:+74932849 | MS.gene82242:CDS |
| CTCGGTTATTCGACATAAAT+GGG | 0.433140 | 4.2:+74933711 | MS.gene82242:CDS |
| CCGGGTTGAACCGGGTTTGA+AGG | 0.439727 | 4.2:+74931403 | MS.gene82242:CDS |
| AAAGAAGCTGTTACTCGGTT+CGG | 0.446194 | 4.2:+74931476 | MS.gene82242:CDS |
| GATAGAGTCGGCTTTAGAAC+TGG | 0.446529 | 4.2:-74933761 | None:intergenic |
| GCAGAACATTTCAAGAAAAT+GGG | 0.446538 | 4.2:+74933164 | MS.gene82242:CDS |
| TGCCTCTCAAATTCAAAAGA+TGG | 0.451282 | 4.2:-74933911 | None:intergenic |
| AAGCGTTATCTTATTATGAC+GGG | 0.457886 | 4.2:+74933336 | MS.gene82242:CDS |
| ACGAAAGAATCTCGATGAAA+AGG | 0.462368 | 4.2:+74933846 | MS.gene82242:CDS |
| AAGAGCTTATCGTTAAAGAA+AGG | 0.463956 | 4.2:+74932646 | MS.gene82242:CDS |
| CATCACCTCAAGTTCAAAGT+TGG | 0.465116 | 4.2:-74934037 | None:intergenic |
| ATCCCACCTTCAAACTTCTC+TGG | 0.472004 | 4.2:-74933818 | None:intergenic |
| AGAGTAGAGGCTGCAAATAG+AGG | 0.481776 | 4.2:+74933581 | MS.gene82242:CDS |
| AGGGAAGTTAGTAGTTGAAG+AGG | 0.491762 | 4.2:+74933601 | MS.gene82242:CDS |
| GAGTCGTGTTCCTTCCAATT+CGG | 0.497047 | 4.2:+74932839 | MS.gene82242:CDS |
| AATTCCCTTAAAATTAAACC+TGG | 0.505484 | 4.2:-74932867 | None:intergenic |
| AACACAGAAGAGCTTGATGC+TGG | 0.508566 | 4.2:+74932591 | MS.gene82242:CDS |
| GATGAAAAGGAAAGTGTCGT+TGG | 0.508711 | 4.2:+74933859 | MS.gene82242:CDS |
| GACGGGGATTGTGTGGAAAA+GGG | 0.509570 | 4.2:+74933353 | MS.gene82242:CDS |
| GAATATCACTCGAGAAAACC+AGG | 0.513568 | 4.2:+74932985 | MS.gene82242:CDS |
| ATTCTGAGTTAAACTCTCCC+TGG | 0.516756 | 4.2:-74933003 | None:intergenic |
| AGAGCTTATCGTTAAAGAAA+GGG | 0.516851 | 4.2:+74932647 | MS.gene82242:CDS |
| TTGTTGAAAATCTGAAATCA+AGG | 0.528808 | 4.2:+74932712 | MS.gene82242:CDS |
| AAAGCGTTATCTTATTATGA+CGG | 0.532017 | 4.2:+74933335 | MS.gene82242:CDS |
| CTGTTAAAGAAGCTGTTACT+CGG | 0.535629 | 4.2:+74931471 | MS.gene82242:CDS |
| GGCAAGTGCAGCTGCTTCGG+CGG | 0.535980 | 4.2:-74933306 | None:intergenic |
| ATGAAAAGGAAAGTGTCGTT+GGG | 0.538173 | 4.2:+74933860 | MS.gene82242:CDS |
| TTTCTTGAAATGTTCTGCCT+CGG | 0.538325 | 4.2:-74933159 | None:intergenic |
| CGCTGATGTTCGAGTTTCCG+TGG | 0.539445 | 4.2:+74932932 | MS.gene82242:CDS |
| AAACCGTTCTCCTTCAAACC+CGG | 0.539912 | 4.2:-74931413 | None:intergenic |
| CCTTCAAACCCGGTTCAACC+CGG | 0.540841 | 4.2:-74931403 | None:intergenic |
| GCTTCTTTAACAGACTCAAA+CGG | 0.540992 | 4.2:-74931461 | None:intergenic |
| CGATAGGTCAAATATTGAGC+CGG | 0.541111 | 4.2:+74933783 | MS.gene82242:CDS |
| GATTGTGTGGAAAAGGGTGA+TGG | 0.543909 | 4.2:+74933359 | MS.gene82242:CDS |
| AAGAGTTGGAAAGTACCAAA+AGG | 0.544666 | 4.2:+74932688 | MS.gene82242:CDS |
| TTTCTTGTTGAGTGATTCCA+CGG | 0.545510 | 4.2:-74932949 | None:intergenic |
| AGCTTCTTCGATAGTGAGCA+AGG | 0.545619 | 4.2:-74933688 | None:intergenic |
| GCTTGATGCTGGAAAATTGG+AGG | 0.546478 | 4.2:+74932602 | MS.gene82242:CDS |
| AGAAGCCAACTTTGAACTTG+AGG | 0.546691 | 4.2:+74934032 | MS.gene82242:CDS |
| GGCGATCCGAGGGTAACAAA+AGG | 0.547667 | 4.2:+74933636 | MS.gene82242:CDS |
| GAGTAGAGGCTGCAAATAGA+GGG | 0.556599 | 4.2:+74933582 | MS.gene82242:CDS |
| GTGGTGAACCGGGTTGAACC+GGG | 0.557124 | 4.2:+74931395 | MS.gene82242:CDS |
| GTGTCGTTGGGTCAGATGCT+TGG | 0.562470 | 4.2:+74933872 | MS.gene82242:CDS |
| TAGAGCATTATACTCTTCAA+AGG | 0.563624 | 4.2:-74933393 | None:intergenic |
| GATGAAGAAAAGGAAAACCA+TGG | 0.563731 | 4.2:+74932816 | MS.gene82242:CDS |
| AGCTCTTTCGTAATATCGGA+AGG | 0.563753 | 4.2:-74933122 | None:intergenic |
| CGAAGTTAAAACAAGCAAGA+AGG | 0.565482 | 4.2:+74933538 | MS.gene82242:CDS |
| CCTGGATTCGCCGAATTGGA+AGG | 0.568328 | 4.2:-74932849 | None:intergenic |
| GAACCGGGTTTGAAGGAGAA+CGG | 0.571772 | 4.2:+74931410 | MS.gene82242:CDS |
| TGAAGCTATGGTGGTGAACC+GGG | 0.577121 | 4.2:+74931385 | None:intergenic |
| CTCACTATCGAAGAAGCTCT+CGG | 0.579805 | 4.2:+74933693 | MS.gene82242:CDS |
| TTATTATGACGGGGATTGTG+TGG | 0.580473 | 4.2:+74933346 | MS.gene82242:CDS |
| AGAAGCTTTGGAAAGAGTAG+AGG | 0.581826 | 4.2:+74933568 | MS.gene82242:CDS |
| ATGAAGAAAAGGAAAACCAT+GGG | 0.586803 | 4.2:+74932817 | MS.gene82242:CDS |
| ATGCCAGAGAAGTTTGAAGG+TGG | 0.600167 | 4.2:+74933815 | MS.gene82242:CDS |
| TGGAAGGAACACGACTCCCA+TGG | 0.603144 | 4.2:-74932833 | None:intergenic |
| ATTTGACCTATCGATAGAGT+CGG | 0.604595 | 4.2:-74933773 | None:intergenic |
| CTAAAGCCGACTCTATCGAT+AGG | 0.608619 | 4.2:+74933767 | MS.gene82242:CDS |
| AAAATTGGAGGAACAAGCAG+TGG | 0.610904 | 4.2:+74932614 | MS.gene82242:CDS |
| TTTAAGAAAATGGCGATCCG+AGG | 0.618775 | 4.2:+74933625 | MS.gene82242:CDS |
| ATGATGCCAGAGAAGTTTGA+AGG | 0.619171 | 4.2:+74933812 | MS.gene82242:CDS |
| CCAAACAAGACTTAAACTGC+AGG | 0.619705 | 4.2:+74933061 | MS.gene82242:CDS |
| GAAGGAGAACGGTTTAAGAG+CGG | 0.621716 | 4.2:+74931421 | MS.gene82242:CDS |
| GAAGCTGTTACTCGGTTCGG+TGG | 0.622084 | 4.2:+74931479 | MS.gene82242:CDS |
| TTAAGAAAATGGCGATCCGA+GGG | 0.633233 | 4.2:+74933626 | MS.gene82242:CDS |
| TCTAACATGCAAAGCTCGAG+AGG | 0.633623 | 4.2:+74933412 | MS.gene82242:CDS |
| AACAAGACTTAAACTGCAGG+TGG | 0.640787 | 4.2:+74933064 | MS.gene82242:CDS |
| ACTCAACAAGAAACTTCAGA+AGG | 0.651200 | 4.2:+74932959 | MS.gene82242:CDS |
| AAAGAAGCTGAAATTGAATG+TGG | 0.654834 | 4.2:+74933089 | MS.gene82242:CDS |
| GCTTCAACGATTGAGTTCCG+AGG | 0.676528 | 4.2:+74933142 | MS.gene82242:CDS |
| AGCGTTATCTTATTATGACG+GGG | 0.681282 | 4.2:+74933337 | MS.gene82242:CDS |
| AATATCACTCGAGAAAACCA+GGG | 0.694657 | 4.2:+74932986 | MS.gene82242:CDS |
| TGCCAGAGAAGTTTGAAGGT+GGG | 0.696821 | 4.2:+74933816 | MS.gene82242:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTTTATTTTTTAT+AGG | + | chr4.2:74931683-74931702 | MS.gene82242:intron | 0.0% |
| !! | TCATATGAAATTAATATATT+TGG | + | chr4.2:74931853-74931872 | MS.gene82242:intron | 10.0% |
| !!! | TTATTTTTATTTTTTATAGG+TGG | + | chr4.2:74931686-74931705 | MS.gene82242:intron | 10.0% |
| !!! | TTGTGTATTTTTTTAATTTT+AGG | + | chr4.2:74931736-74931755 | MS.gene82242:intron | 10.0% |
| !! | ATACATTCATTGAAAAAATA+GGG | - | chr4.2:74932277-74932296 | None:intergenic | 15.0% |
| !! | TGAAATTAATATATTTGGAT+AGG | + | chr4.2:74931858-74931877 | MS.gene82242:intron | 15.0% |
| !! | AACATAAAAATAAATACCTG+AGG | - | chr4.2:74931575-74931594 | None:intergenic | 20.0% |
| !! | CATACATTCATTGAAAAAAT+AGG | - | chr4.2:74932278-74932297 | None:intergenic | 20.0% |
| !! | CTAAATTATAAACATCTTAG+AGG | - | chr4.2:74932411-74932430 | None:intergenic | 20.0% |
| !! | TGATTATTATGATTAAGAAC+AGG | - | chr4.2:74931521-74931540 | None:intergenic | 20.0% |
| !!! | ATTCATATTTTCTAACTAAG+TGG | - | chr4.2:74932079-74932098 | None:intergenic | 20.0% |
| !!! | GAAAATGGATGTTTTAAAAA+GGG | + | chr4.2:74933499-74933518 | MS.gene82242:CDS | 20.0% |
| !!! | TTTTTAATTTTAGGAAGACT+TGG | + | chr4.2:74931745-74931764 | MS.gene82242:intron | 20.0% |
| ! | AATATCAAGATTCAAAGCAT+AGG | - | chr4.2:74932332-74932351 | None:intergenic | 25.0% |
| ! | AATTCCCTTAAAATTAAACC+TGG | - | chr4.2:74932870-74932889 | None:intergenic | 25.0% |
| ! | GAAAAAAGAAGATGAAGAAA+AGG | + | chr4.2:74932806-74932825 | MS.gene82242:CDS | 25.0% |
| ! | GTTGAATTTATGTGAAGATA+AGG | + | chr4.2:74932776-74932795 | MS.gene82242:CDS | 25.0% |
| ! | TGAAATCCAAAAAAACCATA+AGG | - | chr4.2:74932457-74932476 | None:intergenic | 25.0% |
| ! | TTCAAAAATAACTTCACTAG+AGG | + | chr4.2:74933028-74933047 | MS.gene82242:CDS | 25.0% |
| !! | AAAGCGTTATCTTATTATGA+CGG | + | chr4.2:74933335-74933354 | MS.gene82242:CDS | 25.0% |
| !! | ATAAGATAACGCTTTTATCT+CGG | - | chr4.2:74933330-74933349 | None:intergenic | 25.0% |
| !! | TATGATTCATATGATGATGT+TGG | + | chr4.2:74931907-74931926 | MS.gene82242:intron | 25.0% |
| !! | TTGTTGAAAATCTGAAATCA+AGG | + | chr4.2:74932712-74932731 | MS.gene82242:CDS | 25.0% |
| !! | TTTGGATTTCATACGTTTTT+GGG | + | chr4.2:74932466-74932485 | MS.gene82242:intron | 25.0% |
| !! | TTTTACCATGATTATTACAG+TGG | + | chr4.2:74932249-74932268 | MS.gene82242:intron | 25.0% |
| !! | TTTTGGATTTCATACGTTTT+TGG | + | chr4.2:74932465-74932484 | MS.gene82242:intron | 25.0% |
| !!! | AAGAGAAAGAAATTTGGTTT+TGG | + | chr4.2:74933971-74933990 | MS.gene82242:CDS | 25.0% |
| !!! | CGAAAATGGATGTTTTAAAA+AGG | + | chr4.2:74933498-74933517 | MS.gene82242:CDS | 25.0% |
| !!! | GAATCCAGGTTTAATTTTAA+GGG | + | chr4.2:74932863-74932882 | MS.gene82242:CDS | 25.0% |
| !!! | TCTTGATGTTTTAAAAGAGT+TGG | + | chr4.2:74932674-74932693 | MS.gene82242:CDS | 25.0% |
| AAAGAAGCTGAAATTGAATG+TGG | + | chr4.2:74933089-74933108 | MS.gene82242:CDS | 30.0% | |
| AAGAGCTTATCGTTAAAGAA+AGG | + | chr4.2:74932646-74932665 | MS.gene82242:CDS | 30.0% | |
| AAGCGTTATCTTATTATGAC+GGG | + | chr4.2:74933336-74933355 | MS.gene82242:CDS | 30.0% | |
| AGAGCTTATCGTTAAAGAAA+GGG | + | chr4.2:74932647-74932666 | MS.gene82242:CDS | 30.0% | |
| ATGAAGAAAAGGAAAACCAT+GGG | + | chr4.2:74932817-74932836 | MS.gene82242:CDS | 30.0% | |
| CTTCCAAATCATTTGTCATT+AGG | + | chr4.2:74932026-74932045 | MS.gene82242:intron | 30.0% | |
| GCAGAACATTTCAAGAAAAT+GGG | + | chr4.2:74933164-74933183 | MS.gene82242:CDS | 30.0% | |
| TAAATACCTGAGGAATAATG+AGG | - | chr4.2:74931565-74931584 | None:intergenic | 30.0% | |
| TATGAATTATGAATGCTCTC+TGG | + | chr4.2:74932092-74932111 | MS.gene82242:intron | 30.0% | |
| TATTAACCTCATTATTCCTC+AGG | + | chr4.2:74931556-74931575 | MS.gene82242:intron | 30.0% | |
| TCATAAGAATCAAAGCCTTA+TGG | + | chr4.2:74932439-74932458 | MS.gene82242:intron | 30.0% | |
| TCTGCTAAGAGAAAGAAATT+TGG | + | chr4.2:74933965-74933984 | MS.gene82242:CDS | 30.0% | |
| TTGAAGCTCTTTCGTAATAT+CGG | - | chr4.2:74933129-74933148 | None:intergenic | 30.0% | |
| ! | ATCCATCTTTTGAATTTGAG+AGG | + | chr4.2:74933909-74933928 | MS.gene82242:CDS | 30.0% |
| ! | TAGAGCATTATACTCTTCAA+AGG | - | chr4.2:74933396-74933415 | None:intergenic | 30.0% |
| ! | TGCTTTGAATCTTGATATTG+TGG | + | chr4.2:74932333-74932352 | MS.gene82242:intron | 30.0% |
| ! | TTGGATTTCATACGTTTTTG+GGG | + | chr4.2:74932467-74932486 | MS.gene82242:intron | 30.0% |
| ! | TTTTCACAAAACCAAAACTG+CGG | - | chr4.2:74932388-74932407 | None:intergenic | 30.0% |
| !! | CGAATCCAGGTTTAATTTTA+AGG | + | chr4.2:74932862-74932881 | MS.gene82242:CDS | 30.0% |
| !! | TTGAAGAGGCTTTAAGAAAA+TGG | + | chr4.2:74933615-74933634 | MS.gene82242:CDS | 30.0% |
| !!! | TCAAAGCCTTATGGTTTTTT+TGG | + | chr4.2:74932448-74932467 | MS.gene82242:intron | 30.0% |
| AAAAATGAAGGAAGCTGCTA+GGG | + | chr4.2:74933283-74933302 | MS.gene82242:CDS | 35.0% | |
| AACAACCTAGTTGTCAGTTT+GGG | + | chr4.2:74932151-74932170 | MS.gene82242:intron | 35.0% | |
| AATATCACTCGAGAAAACCA+GGG | + | chr4.2:74932986-74933005 | MS.gene82242:CDS | 35.0% | |
| ACGAAAGAATCTCGATGAAA+AGG | + | chr4.2:74933846-74933865 | MS.gene82242:CDS | 35.0% | |
| ACTCAACAAGAAACTTCAGA+AGG | + | chr4.2:74932959-74932978 | MS.gene82242:CDS | 35.0% | |
| AGCGTTATCTTATTATGACG+GGG | + | chr4.2:74933337-74933356 | MS.gene82242:CDS | 35.0% | |
| ATTTGACCTATCGATAGAGT+CGG | - | chr4.2:74933776-74933795 | None:intergenic | 35.0% | |
| CCAAATCATTTGTCATTAGG+TGG | + | chr4.2:74932029-74932048 | MS.gene82242:intron | 35.0% | |
| CCACCTAATGACAAATGATT+TGG | - | chr4.2:74932032-74932051 | None:intergenic | 35.0% | |
| CGAAGCAAATGTATCGAAAA+TGG | + | chr4.2:74933484-74933503 | MS.gene82242:CDS | 35.0% | |
| CGAAGTTAAAACAAGCAAGA+AGG | + | chr4.2:74933538-74933557 | MS.gene82242:CDS | 35.0% | |
| CTCGGTTATTCGACATAAAT+GGG | + | chr4.2:74933711-74933730 | MS.gene82242:CDS | 35.0% | |
| CTGTTAAAGAAGCTGTTACT+CGG | + | chr4.2:74931471-74931490 | MS.gene82242:CDS | 35.0% | |
| CTTGATATTGTGGCAAAATG+CGG | + | chr4.2:74932343-74932362 | MS.gene82242:intron | 35.0% | |
| GATGAAGAAAAGGAAAACCA+TGG | + | chr4.2:74932816-74932835 | MS.gene82242:CDS | 35.0% | |
| GCTTCTTTAACAGACTCAAA+CGG | - | chr4.2:74931464-74931483 | None:intergenic | 35.0% | |
| GGCAGAACATTTCAAGAAAA+TGG | + | chr4.2:74933163-74933182 | MS.gene82242:CDS | 35.0% | |
| TAGGTGGTTGTTTGTGATTT+CGG | + | chr4.2:74931702-74931721 | MS.gene82242:intron | 35.0% | |
| TCTCGGTTATTCGACATAAA+TGG | + | chr4.2:74933710-74933729 | MS.gene82242:CDS | 35.0% | |
| TGCCTCTCAAATTCAAAAGA+TGG | - | chr4.2:74933914-74933933 | None:intergenic | 35.0% | |
| TTCCACATAGAAATCGAACT+CGG | + | chr4.2:74932000-74932019 | MS.gene82242:intron | 35.0% | |
| TTTCTATGTGGAACAACTCT+AGG | - | chr4.2:74931993-74932012 | None:intergenic | 35.0% | |
| TTTCTTGAAATGTTCTGCCT+CGG | - | chr4.2:74933162-74933181 | None:intergenic | 35.0% | |
| TTTCTTGTTGAGTGATTCCA+CGG | - | chr4.2:74932952-74932971 | None:intergenic | 35.0% | |
| TTTGGATAGGCAAATGTTTG+TGG | + | chr4.2:74931871-74931890 | MS.gene82242:intron | 35.0% | |
| ! | CAGATTTTCAACAAGCCTTT+TGG | - | chr4.2:74932706-74932725 | None:intergenic | 35.0% |
| ! | GATTCATATGATGATGTTGG+TGG | + | chr4.2:74931910-74931929 | MS.gene82242:intron | 35.0% |
| ! | GGAAGTATATTCTGGTAATC+CGG | + | chr4.2:74931948-74931967 | MS.gene82242:intron | 35.0% |
| ! | GTGACTGCAATTTTGAATCA+CGG | - | chr4.2:74932308-74932327 | None:intergenic | 35.0% |
| !! | AAGAGTTGGAAAGTACCAAA+AGG | + | chr4.2:74932688-74932707 | MS.gene82242:CDS | 35.0% |
| !! | ATGAAAAGGAAAGTGTCGTT+GGG | + | chr4.2:74933860-74933879 | MS.gene82242:CDS | 35.0% |
| !! | ATTTTAGGAAGACTTGGATC+TGG | + | chr4.2:74931751-74931770 | MS.gene82242:intron | 35.0% |
| !! | TGGATTTCATACGTTTTTGG+GGG | + | chr4.2:74932468-74932487 | MS.gene82242:intron | 35.0% |
| !! | TTGGTGGTTGTTATTTCCTA+GGG | + | chr4.2:74931926-74931945 | MS.gene82242:intron | 35.0% |
| AAAATTGGAGGAACAAGCAG+TGG | + | chr4.2:74932614-74932633 | MS.gene82242:CDS | 40.0% | |
| AAAGAAGCTGTTACTCGGTT+CGG | + | chr4.2:74931476-74931495 | MS.gene82242:CDS | 40.0% | |
| AACAAGACTTAAACTGCAGG+TGG | + | chr4.2:74933064-74933083 | MS.gene82242:CDS | 40.0% | |
| AGAAGCCAACTTTGAACTTG+AGG | + | chr4.2:74934032-74934051 | MS.gene82242:CDS | 40.0% | |
| AGAGCTTGATGCTGGAAAAT+TGG | + | chr4.2:74932599-74932618 | MS.gene82242:CDS | 40.0% | |
| AGCTCTTTCGTAATATCGGA+AGG | - | chr4.2:74933125-74933144 | None:intergenic | 40.0% | |
| AGGGAAGTTAGTAGTTGAAG+AGG | + | chr4.2:74933601-74933620 | MS.gene82242:CDS | 40.0% | |
| AGGTGGTTGTTTGTGATTTC+GGG | + | chr4.2:74931703-74931722 | MS.gene82242:intron | 40.0% | |
| AGTTGCTGCTCGAAAAATGA+AGG | + | chr4.2:74933271-74933290 | MS.gene82242:CDS | 40.0% | |
| ATGATGCCAGAGAAGTTTGA+AGG | + | chr4.2:74933812-74933831 | MS.gene82242:CDS | 40.0% | |
| ATTCTGAGTTAAACTCTCCC+TGG | - | chr4.2:74933006-74933025 | None:intergenic | 40.0% | |
| ATTGTCCCAAACTGACAACT+AGG | - | chr4.2:74932159-74932178 | None:intergenic | 40.0% | |
| CAACAACCTAGTTGTCAGTT+TGG | + | chr4.2:74932150-74932169 | MS.gene82242:intron | 40.0% | |
| CCAAACAAGACTTAAACTGC+AGG | + | chr4.2:74933061-74933080 | MS.gene82242:CDS | 40.0% | |
| CGATAGGTCAAATATTGAGC+CGG | + | chr4.2:74933783-74933802 | MS.gene82242:CDS | 40.0% | |
| CTAACTAAGTGGTTAGACTC+AGG | - | chr4.2:74932068-74932087 | None:intergenic | 40.0% | |
| GAAAAATGAAGGAAGCTGCT+AGG | + | chr4.2:74933282-74933301 | MS.gene82242:CDS | 40.0% | |
| GAATATCACTCGAGAAAACC+AGG | + | chr4.2:74932985-74933004 | MS.gene82242:CDS | 40.0% | |
| TACCAGAATATACTTCCCCT+AGG | - | chr4.2:74931945-74931964 | None:intergenic | 40.0% | |
| TAGGCAAATGTTTGTGGCTT+TGG | + | chr4.2:74931877-74931896 | MS.gene82242:intron | 40.0% | |
| TATTCTGGTAATCCGGAGTT+AGG | + | chr4.2:74931955-74931974 | MS.gene82242:intron | 40.0% | |
| TCCACATAGAAATCGAACTC+GGG | + | chr4.2:74932001-74932020 | MS.gene82242:intron | 40.0% | |
| TTAAGAAAATGGCGATCCGA+GGG | + | chr4.2:74933626-74933645 | MS.gene82242:CDS | 40.0% | |
| TTTAAGAAAATGGCGATCCG+AGG | + | chr4.2:74933625-74933644 | MS.gene82242:CDS | 40.0% | |
| ! | ATCGAAGGAGTTCTAACTAG+AGG | - | chr4.2:74932119-74932138 | None:intergenic | 40.0% |
| ! | TTATTATGACGGGGATTGTG+TGG | + | chr4.2:74933346-74933365 | MS.gene82242:CDS | 40.0% |
| ! | TTCCTAGGGGAAGTATATTC+TGG | + | chr4.2:74931940-74931959 | MS.gene82242:intron | 40.0% |
| ! | TTGTCAGTTTGGGACAATTG+TGG | + | chr4.2:74932161-74932180 | MS.gene82242:intron | 40.0% |
| !! | AGAAGCTTTGGAAAGAGTAG+AGG | + | chr4.2:74933568-74933587 | MS.gene82242:CDS | 40.0% |
| !! | CAGCGATATCGTTTGTTGTT+CGG | - | chr4.2:74932917-74932936 | None:intergenic | 40.0% |
| !! | CCTGCAGTTTAAGTCTTGTT+TGG | - | chr4.2:74933064-74933083 | None:intergenic | 40.0% |
| !! | GATGAAAAGGAAAGTGTCGT+TGG | + | chr4.2:74933859-74933878 | MS.gene82242:CDS | 40.0% |
| !! | GTTGGTGGTTGTTATTTCCT+AGG | + | chr4.2:74931925-74931944 | MS.gene82242:intron | 40.0% |
| !! | TGGTGGTTGTTATTTCCTAG+GGG | + | chr4.2:74931927-74931946 | MS.gene82242:intron | 40.0% |
| AAACCGTTCTCCTTCAAACC+CGG | - | chr4.2:74931416-74931435 | None:intergenic | 45.0% | |
| AACACAGAAGAGCTTGATGC+TGG | + | chr4.2:74932591-74932610 | MS.gene82242:CDS | 45.0% | |
| ACAACTAGGTTGTTGAGCTG+GGG | - | chr4.2:74932145-74932164 | None:intergenic | 45.0% | |
| ACAACTCTAGGTCAGACTTC+CGG | - | chr4.2:74931981-74932000 | None:intergenic | 45.0% | |
| ACCCGAGTTCGATTTCTATG+TGG | - | chr4.2:74932005-74932024 | None:intergenic | 45.0% | |
| ACTAAGTGGTTAGACTCAGG+TGG | - | chr4.2:74932065-74932084 | None:intergenic | 45.0% | |
| AGAGTAGAGGCTGCAAATAG+AGG | + | chr4.2:74933581-74933600 | MS.gene82242:CDS | 45.0% | |
| AGCTTCTTCGATAGTGAGCA+AGG | - | chr4.2:74933691-74933710 | None:intergenic | 45.0% | |
| ATCCCACCTTCAAACTTCTC+TGG | - | chr4.2:74933821-74933840 | None:intergenic | 45.0% | |
| ATGCCAGAGAAGTTTGAAGG+TGG | + | chr4.2:74933815-74933834 | MS.gene82242:CDS | 45.0% | |
| CACAAAACCAAAACTGCGGT+TGG | - | chr4.2:74932384-74932403 | None:intergenic | 45.0% | |
| CTCACTATCGAAGAAGCTCT+CGG | + | chr4.2:74933693-74933712 | MS.gene82242:CDS | 45.0% | |
| GAAGGAGAACGGTTTAAGAG+CGG | + | chr4.2:74931421-74931440 | MS.gene82242:CDS | 45.0% | |
| GAAGGCTCTTGAAGAAGCTT+TGG | + | chr4.2:74933556-74933575 | MS.gene82242:CDS | 45.0% | |
| GACAACTAGGTTGTTGAGCT+GGG | - | chr4.2:74932146-74932165 | None:intergenic | 45.0% | |
| GAGTAGAGGCTGCAAATAGA+GGG | + | chr4.2:74933582-74933601 | MS.gene82242:CDS | 45.0% | |
| GAGTCGTGTTCCTTCCAATT+CGG | + | chr4.2:74932839-74932858 | MS.gene82242:CDS | 45.0% | |
| GATTGTGTGGAAAAGGGTGA+TGG | + | chr4.2:74933359-74933378 | MS.gene82242:CDS | 45.0% | |
| GCTTGATGCTGGAAAATTGG+AGG | + | chr4.2:74932602-74932621 | MS.gene82242:CDS | 45.0% | |
| GGGAGCCACTGTAATAATCA+TGG | - | chr4.2:74932257-74932276 | None:intergenic | 45.0% | |
| TAAACCTGGATTCGCCGAAT+TGG | - | chr4.2:74932856-74932875 | None:intergenic | 45.0% | |
| TCTAACATGCAAAGCTCGAG+AGG | + | chr4.2:74933412-74933431 | MS.gene82242:CDS | 45.0% | |
| TCTCTGGCATCATCAGTTTC+CGG | - | chr4.2:74933805-74933824 | None:intergenic | 45.0% | |
| TGACAACTAGGTTGTTGAGC+TGG | - | chr4.2:74932147-74932166 | None:intergenic | 45.0% | |
| TGCCAGAGAAGTTTGAAGGT+GGG | + | chr4.2:74933816-74933835 | MS.gene82242:CDS | 45.0% | |
| ! | CTAAAGCCGACTCTATCGAT+AGG | + | chr4.2:74933767-74933786 | MS.gene82242:CDS | 45.0% |
| ! | TGATCGCCTTTTGTTACCCT+CGG | - | chr4.2:74933645-74933664 | None:intergenic | 45.0% |
| !! | AGTCGGCTTTAGAACTGGTT+TGG | - | chr4.2:74933759-74933778 | None:intergenic | 45.0% |
| !! | GATAGAGTCGGCTTTAGAAC+TGG | - | chr4.2:74933764-74933783 | None:intergenic | 45.0% |
| !!! | AAAAAAATATTGTATTATTT+TGG | + | chr4.2:74931657-74931676 | MS.gene82242:intron | 5.0% |
| GAACCGGGTTTGAAGGAGAA+CGG | + | chr4.2:74931410-74931429 | MS.gene82242:CDS | 50.0% | |
| GACGGGGATTGTGTGGAAAA+GGG | + | chr4.2:74933353-74933372 | MS.gene82242:CDS | 50.0% | |
| GCTTCAACGATTGAGTTCCG+AGG | + | chr4.2:74933142-74933161 | MS.gene82242:CDS | 50.0% | |
| GGAGGAACAAGCAGTGGAAT+TGG | + | chr4.2:74932620-74932639 | MS.gene82242:CDS | 50.0% | |
| TGACGGGGATTGTGTGGAAA+AGG | + | chr4.2:74933352-74933371 | MS.gene82242:CDS | 50.0% | |
| ! | GATCGTTCCAACCGCAGTTT+TGG | + | chr4.2:74932374-74932393 | MS.gene82242:intron | 50.0% |
| !! | GGTTCGGTGGTGTTGGTTAT+TGG | + | chr4.2:74931492-74931511 | MS.gene82242:intron | 50.0% |
| CCTGGATTCGCCGAATTGGA+AGG | - | chr4.2:74932852-74932871 | None:intergenic | 55.0% | |
| CCTTCAAACCCGGTTCAACC+CGG | - | chr4.2:74931406-74931425 | None:intergenic | 55.0% | |
| CCTTCCAATTCGGCGAATCC+AGG | + | chr4.2:74932849-74932868 | MS.gene82242:CDS | 55.0% | |
| CTGGTAATCCGGAGTTAGGC+CGG | + | chr4.2:74931959-74931978 | MS.gene82242:intron | 55.0% | |
| GGCGATCCGAGGGTAACAAA+AGG | + | chr4.2:74933636-74933655 | MS.gene82242:CDS | 55.0% | |
| GTTGAGCTGGGGAACATCGA+AGG | - | chr4.2:74932134-74932153 | None:intergenic | 55.0% | |
| TCAGACTTCCGGCCTAACTC+CGG | - | chr4.2:74931970-74931989 | None:intergenic | 55.0% | |
| TGGAAGGAACACGACTCCCA+TGG | - | chr4.2:74932836-74932855 | None:intergenic | 55.0% | |
| ! | CGCTGATGTTCGAGTTTCCG+TGG | + | chr4.2:74932932-74932951 | MS.gene82242:CDS | 55.0% |
| ! | GTGTCGTTGGGTCAGATGCT+TGG | + | chr4.2:74933872-74933891 | MS.gene82242:CDS | 55.0% |
| !! | GAAGCTGTTACTCGGTTCGG+TGG | + | chr4.2:74931479-74931498 | MS.gene82242:CDS | 55.0% |
| !! | GTTACTCGGTTCGGTGGTGT+TGG | + | chr4.2:74931485-74931504 | MS.gene82242:intron | 55.0% |
| CTCGGCAAGTGCAGCTGCTT+CGG | - | chr4.2:74933312-74933331 | None:intergenic | 60.0% | |
| ! | CCGGGTTGAACCGGGTTTGA+AGG | + | chr4.2:74931403-74931422 | MS.gene82242:CDS | 60.0% |
| ! | GGTGGTGAACCGGGTTGAAC+CGG | + | chr4.2:74931394-74931413 | MS.gene82242:CDS | 60.0% |
| ! | GTGGTGAACCGGGTTGAACC+GGG | + | chr4.2:74931395-74931414 | MS.gene82242:CDS | 60.0% |
| GGCAAGTGCAGCTGCTTCGG+CGG | - | chr4.2:74933309-74933328 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 74931392 | 74934057 | 74931392 | ID=MS.gene82242 |
| chr4.2 | mRNA | 74931392 | 74934057 | 74931392 | ID=MS.gene82242.t1;Parent=MS.gene82242 |
| chr4.2 | exon | 74931392 | 74931502 | 74931392 | ID=MS.gene82242.t1.exon1;Parent=MS.gene82242.t1 |
| chr4.2 | CDS | 74931392 | 74931502 | 74931392 | ID=cds.MS.gene82242.t1;Parent=MS.gene82242.t1 |
| chr4.2 | exon | 74932585 | 74934057 | 74932585 | ID=MS.gene82242.t1.exon2;Parent=MS.gene82242.t1 |
| chr4.2 | CDS | 74932585 | 74934057 | 74932585 | ID=cds.MS.gene82242.t1;Parent=MS.gene82242.t1 |
| Gene Sequence |
| Protein sequence |
