Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82279.t1 | RHN72162.1 | 91.9 | 258 | 19 | 1 | 1 | 258 | 1 | 256 | 3.50E-134 | 487.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82279.t1 | P26413 | 72.5 | 258 | 69 | 1 | 1 | 258 | 1 | 256 | 3.7e-108 | 392.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82279.t1 | G7ILM0 | 91.9 | 258 | 19 | 1 | 1 | 258 | 1 | 256 | 2.5e-134 | 487.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051279 | MS.gene82279 | 0.89914 | 2.66E-77 | -1.69E-46 |
| MS.gene051744 | MS.gene82279 | 0.81712 | 3.89E-52 | -1.69E-46 |
| MS.gene052016 | MS.gene82279 | 0.813514 | 2.46E-51 | -1.69E-46 |
| MS.gene053296 | MS.gene82279 | 0.820208 | 7.74E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene82279 | 0.80568 | 1.19E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene82279 | 0.821748 | 3.42E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene82279 | 0.800025 | 1.75E-48 | -1.69E-46 |
| MS.gene058010 | MS.gene82279 | 0.805555 | 1.26E-49 | -1.69E-46 |
| MS.gene059634 | MS.gene82279 | 0.807171 | 5.76E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82279.t1 | MTR_2g017730 | 91.860 | 258 | 19 | 1 | 1 | 258 | 1 | 256 | 1.38e-177 | 502 |
| MS.gene82279.t1 | MTR_4g130540 | 72.868 | 258 | 68 | 1 | 1 | 258 | 1 | 256 | 1.67e-139 | 407 |
| MS.gene82279.t1 | MTR_4g063720 | 72.908 | 251 | 66 | 1 | 8 | 258 | 9 | 257 | 2.24e-132 | 388 |
| MS.gene82279.t1 | MTR_4g063710 | 72.510 | 251 | 67 | 1 | 8 | 258 | 9 | 257 | 5.16e-132 | 387 |
| MS.gene82279.t1 | MTR_7g099680 | 71.315 | 251 | 70 | 1 | 8 | 258 | 9 | 257 | 3.16e-130 | 383 |
| MS.gene82279.t1 | MTR_7g024390 | 71.315 | 251 | 70 | 1 | 8 | 258 | 9 | 257 | 5.79e-129 | 379 |
| MS.gene82279.t1 | MTR_7g024580 | 70.916 | 251 | 71 | 1 | 8 | 258 | 9 | 257 | 6.65e-128 | 377 |
| MS.gene82279.t1 | MTR_7g025820 | 68.273 | 249 | 75 | 2 | 8 | 254 | 9 | 255 | 2.00e-119 | 353 |
| MS.gene82279.t1 | MTR_2g032160 | 64.683 | 252 | 85 | 2 | 8 | 257 | 9 | 258 | 2.59e-118 | 346 |
| MS.gene82279.t1 | MTR_6g033850 | 65.200 | 250 | 85 | 1 | 8 | 257 | 9 | 256 | 3.52e-117 | 350 |
| MS.gene82279.t1 | MTR_7g026170 | 65.613 | 253 | 83 | 2 | 7 | 257 | 8 | 258 | 1.43e-116 | 347 |
| MS.gene82279.t1 | MTR_6g033760 | 66.800 | 250 | 81 | 1 | 8 | 257 | 9 | 256 | 1.91e-116 | 347 |
| MS.gene82279.t1 | MTR_7g021440 | 65.476 | 252 | 83 | 2 | 8 | 257 | 9 | 258 | 3.66e-116 | 346 |
| MS.gene82279.t1 | MTR_4g063720 | 73.853 | 218 | 55 | 1 | 8 | 225 | 9 | 224 | 4.77e-116 | 344 |
| MS.gene82279.t1 | MTR_7g029415 | 64.844 | 256 | 86 | 2 | 1 | 254 | 9 | 262 | 1.14e-115 | 345 |
| MS.gene82279.t1 | MTR_2g038260 | 64.032 | 253 | 87 | 2 | 7 | 257 | 8 | 258 | 9.15e-115 | 342 |
| MS.gene82279.t1 | MTR_7g025790 | 65.476 | 252 | 83 | 2 | 8 | 257 | 9 | 258 | 1.60e-114 | 342 |
| MS.gene82279.t1 | MTR_7g024030 | 64.032 | 253 | 87 | 2 | 7 | 257 | 8 | 258 | 2.86e-114 | 341 |
| MS.gene82279.t1 | MTR_7g025760 | 63.780 | 254 | 88 | 2 | 8 | 259 | 9 | 260 | 2.88e-114 | 341 |
| MS.gene82279.t1 | MTR_7g035155 | 64.800 | 250 | 84 | 2 | 7 | 254 | 8 | 255 | 7.29e-114 | 338 |
| MS.gene82279.t1 | MTR_7g074460 | 66.397 | 247 | 79 | 2 | 8 | 252 | 9 | 253 | 7.75e-114 | 339 |
| MS.gene82279.t1 | MTR_5g066800 | 62.357 | 263 | 84 | 3 | 8 | 257 | 9 | 269 | 9.66e-114 | 340 |
| MS.gene82279.t1 | MTR_2g437440 | 63.281 | 256 | 90 | 2 | 4 | 257 | 5 | 258 | 6.46e-113 | 337 |
| MS.gene82279.t1 | MTR_1g077230 | 61.811 | 254 | 93 | 2 | 7 | 258 | 8 | 259 | 8.40e-113 | 326 |
| MS.gene82279.t1 | MTR_7g026080 | 64.583 | 240 | 81 | 2 | 8 | 245 | 9 | 246 | 2.38e-112 | 324 |
| MS.gene82279.t1 | MTR_7g451380 | 64.567 | 254 | 86 | 2 | 8 | 259 | 9 | 260 | 3.07e-112 | 336 |
| MS.gene82279.t1 | MTR_7g025770 | 64.659 | 249 | 84 | 2 | 8 | 254 | 9 | 255 | 3.26e-112 | 336 |
| MS.gene82279.t1 | MTR_1g017130 | 62.400 | 250 | 90 | 2 | 7 | 254 | 8 | 255 | 5.94e-112 | 334 |
| MS.gene82279.t1 | MTR_7g078190 | 66.000 | 250 | 80 | 3 | 8 | 254 | 9 | 256 | 6.68e-112 | 335 |
| MS.gene82279.t1 | MTR_2g032550 | 62.055 | 253 | 92 | 2 | 7 | 257 | 9 | 259 | 2.40e-111 | 333 |
| MS.gene82279.t1 | MTR_2g040370 | 66.534 | 251 | 80 | 2 | 8 | 258 | 1029 | 1275 | 6.13e-111 | 351 |
| MS.gene82279.t1 | MTR_2g040370 | 65.079 | 252 | 83 | 3 | 8 | 258 | 1413 | 1660 | 1.03e-106 | 339 |
| MS.gene82279.t1 | MTR_6g033820 | 63.178 | 258 | 92 | 2 | 1 | 257 | 1 | 256 | 8.98e-111 | 334 |
| MS.gene82279.t1 | MTR_2g040370 | 66.534 | 251 | 80 | 2 | 8 | 258 | 1029 | 1275 | 9.38e-111 | 350 |
| MS.gene82279.t1 | MTR_2g040370 | 65.079 | 252 | 83 | 3 | 8 | 258 | 1413 | 1660 | 1.47e-106 | 338 |
| MS.gene82279.t1 | MTR_7g026130 | 64.032 | 253 | 87 | 2 | 7 | 257 | 8 | 258 | 2.08e-110 | 334 |
| MS.gene82279.t1 | MTR_6g033955 | 64.000 | 250 | 88 | 1 | 8 | 257 | 9 | 256 | 2.34e-110 | 332 |
| MS.gene82279.t1 | MTR_7g026090 | 62.698 | 252 | 90 | 2 | 8 | 257 | 9 | 258 | 2.82e-110 | 330 |
| MS.gene82279.t1 | MTR_7g025740 | 63.241 | 253 | 89 | 2 | 8 | 258 | 9 | 259 | 3.01e-110 | 332 |
| MS.gene82279.t1 | MTR_4g079590 | 63.158 | 247 | 87 | 2 | 8 | 252 | 9 | 253 | 8.74e-110 | 329 |
| MS.gene82279.t1 | MTR_7g026030 | 61.265 | 253 | 94 | 2 | 8 | 258 | 9 | 259 | 4.56e-109 | 328 |
| MS.gene82279.t1 | MTR_7g025620 | 62.302 | 252 | 91 | 2 | 8 | 257 | 9 | 258 | 5.13e-109 | 327 |
| MS.gene82279.t1 | MTR_2g040260 | 64.143 | 251 | 86 | 2 | 8 | 258 | 1038 | 1284 | 8.15e-109 | 343 |
| MS.gene82279.t1 | MTR_2g032580 | 61.905 | 252 | 92 | 2 | 8 | 257 | 9 | 258 | 1.82e-108 | 325 |
| MS.gene82279.t1 | MTR_6g033870 | 62.550 | 251 | 91 | 2 | 8 | 257 | 10 | 258 | 1.89e-108 | 328 |
| MS.gene82279.t1 | MTR_8g032650 | 62.698 | 252 | 90 | 2 | 8 | 257 | 9 | 258 | 2.72e-108 | 326 |
| MS.gene82279.t1 | MTR_7g026110 | 61.508 | 252 | 92 | 3 | 8 | 257 | 9 | 257 | 4.47e-108 | 325 |
| MS.gene82279.t1 | MTR_7g025720 | 63.525 | 244 | 85 | 2 | 8 | 249 | 9 | 250 | 4.24e-107 | 323 |
| MS.gene82279.t1 | MTR_2g022050 | 63.889 | 252 | 87 | 2 | 8 | 257 | 9 | 258 | 5.87e-107 | 322 |
| MS.gene82279.t1 | MTR_8g099795 | 62.692 | 260 | 86 | 5 | 2 | 260 | 32 | 281 | 3.66e-106 | 322 |
| MS.gene82279.t1 | MTR_8g099945 | 61.776 | 259 | 88 | 5 | 3 | 260 | 33 | 281 | 8.86e-106 | 320 |
| MS.gene82279.t1 | MTR_7g011590 | 59.127 | 252 | 87 | 3 | 8 | 257 | 9 | 246 | 9.51e-103 | 311 |
| MS.gene82279.t1 | MTR_2g040160 | 62.948 | 251 | 89 | 2 | 8 | 258 | 1109 | 1355 | 1.22e-102 | 326 |
| MS.gene82279.t1 | MTR_7g007000 | 60.079 | 253 | 79 | 3 | 7 | 257 | 8 | 240 | 1.74e-101 | 307 |
| MS.gene82279.t1 | MTR_7g078210 | 63.855 | 249 | 86 | 2 | 8 | 254 | 9 | 255 | 3.87e-101 | 307 |
| MS.gene82279.t1 | MTR_7g026140 | 60.079 | 253 | 81 | 2 | 7 | 257 | 8 | 242 | 4.55e-101 | 307 |
| MS.gene82279.t1 | MTR_2g040350 | 62.205 | 254 | 88 | 4 | 9 | 258 | 821 | 1070 | 2.22e-100 | 318 |
| MS.gene82279.t1 | MTR_2g040220 | 62.055 | 253 | 92 | 2 | 8 | 258 | 1018 | 1268 | 2.33e-100 | 320 |
| MS.gene82279.t1 | MTR_2g038270 | 59.231 | 260 | 92 | 4 | 9 | 257 | 10 | 266 | 5.61e-100 | 305 |
| MS.gene82279.t1 | MTR_2g040350 | 62.205 | 254 | 88 | 4 | 9 | 258 | 1039 | 1288 | 1.36e-99 | 317 |
| MS.gene82279.t1 | MTR_2g031670 | 58.577 | 239 | 95 | 2 | 20 | 256 | 43 | 279 | 4.72e-99 | 293 |
| MS.gene82279.t1 | MTR_4g027145 | 57.358 | 265 | 97 | 4 | 7 | 257 | 8 | 270 | 5.93e-98 | 300 |
| MS.gene82279.t1 | MTR_8g103930 | 57.795 | 263 | 80 | 5 | 8 | 257 | 11 | 255 | 5.99e-98 | 299 |
| MS.gene82279.t1 | MTR_4g088515 | 58.661 | 254 | 83 | 2 | 7 | 258 | 275 | 508 | 1.57e-97 | 298 |
| MS.gene82279.t1 | MTR_7g025630 | 58.635 | 249 | 85 | 4 | 8 | 254 | 9 | 241 | 5.11e-96 | 293 |
| MS.gene82279.t1 | MTR_7g451360 | 57.540 | 252 | 73 | 3 | 8 | 257 | 9 | 228 | 3.67e-92 | 282 |
| MS.gene82279.t1 | MTR_7g025260 | 58.744 | 223 | 88 | 2 | 38 | 258 | 11 | 231 | 2.28e-84 | 263 |
| MS.gene82279.t1 | MTR_2g010020 | 53.200 | 250 | 100 | 6 | 9 | 255 | 58 | 293 | 9.62e-79 | 251 |
| MS.gene82279.t1 | MTR_2g010020 | 53.200 | 250 | 100 | 6 | 9 | 255 | 57 | 292 | 1.12e-78 | 250 |
| MS.gene82279.t1 | MTR_4g092920 | 50.000 | 250 | 113 | 4 | 6 | 254 | 51 | 289 | 1.10e-76 | 245 |
| MS.gene82279.t1 | MTR_6g478100 | 54.206 | 214 | 82 | 3 | 35 | 248 | 10 | 207 | 4.52e-71 | 221 |
| MS.gene82279.t1 | MTR_1g041565 | 49.802 | 253 | 68 | 6 | 8 | 257 | 5 | 201 | 2.89e-70 | 225 |
| MS.gene82279.t1 | MTR_6g033800 | 63.905 | 169 | 59 | 1 | 89 | 257 | 1 | 167 | 5.82e-69 | 223 |
| MS.gene82279.t1 | MTR_5g097190 | 47.177 | 248 | 80 | 5 | 7 | 252 | 157 | 355 | 1.14e-68 | 216 |
| MS.gene82279.t1 | MTR_2g005690 | 46.988 | 249 | 121 | 5 | 7 | 254 | 70 | 308 | 3.35e-64 | 213 |
| MS.gene82279.t1 | MTR_1207s0010 | 59.477 | 153 | 59 | 2 | 105 | 257 | 1 | 150 | 1.33e-57 | 182 |
| MS.gene82279.t1 | MTR_6g034005 | 54.190 | 179 | 78 | 2 | 79 | 257 | 2 | 176 | 4.77e-57 | 194 |
| MS.gene82279.t1 | MTR_7g026180 | 65.600 | 125 | 41 | 1 | 73 | 197 | 21 | 143 | 9.75e-51 | 169 |
| MS.gene82279.t1 | MTR_4g092920 | 51.807 | 166 | 69 | 3 | 89 | 254 | 1 | 155 | 4.28e-49 | 169 |
| MS.gene82279.t1 | MTR_4g012050 | 36.400 | 250 | 156 | 2 | 9 | 257 | 4 | 251 | 3.05e-48 | 171 |
| MS.gene82279.t1 | MTR_2g102180 | 35.200 | 250 | 159 | 2 | 9 | 257 | 4 | 251 | 4.07e-45 | 162 |
| MS.gene82279.t1 | MTR_5g092570 | 33.469 | 245 | 160 | 2 | 9 | 252 | 4 | 246 | 7.71e-41 | 149 |
| MS.gene82279.t1 | MTR_3g051300 | 30.800 | 250 | 170 | 2 | 9 | 257 | 4 | 251 | 1.15e-37 | 140 |
| MS.gene82279.t1 | MTR_5g005890 | 40.556 | 180 | 55 | 3 | 71 | 250 | 5 | 132 | 9.38e-35 | 123 |
| MS.gene82279.t1 | MTR_6g033910 | 38.265 | 196 | 68 | 4 | 64 | 257 | 12 | 156 | 4.17e-34 | 122 |
| MS.gene82279.t1 | MTR_5g006180 | 31.559 | 263 | 143 | 7 | 8 | 249 | 29 | 275 | 4.19e-31 | 121 |
| MS.gene82279.t1 | MTR_6g033805 | 66.197 | 71 | 23 | 1 | 1 | 70 | 1 | 71 | 2.37e-29 | 106 |
| MS.gene82279.t1 | MTR_6g033855 | 40.237 | 169 | 50 | 4 | 89 | 257 | 15 | 132 | 1.17e-26 | 105 |
| MS.gene82279.t1 | MTR_3g081170 | 28.788 | 264 | 162 | 7 | 6 | 252 | 24 | 278 | 3.14e-26 | 107 |
| MS.gene82279.t1 | MTR_4g027235 | 64.706 | 68 | 22 | 1 | 7 | 72 | 8 | 75 | 8.60e-26 | 97.1 |
| MS.gene82279.t1 | MTR_4g027085 | 64.706 | 68 | 22 | 1 | 7 | 72 | 8 | 75 | 8.60e-26 | 97.1 |
| MS.gene82279.t1 | MTR_6g033810 | 38.462 | 169 | 53 | 3 | 89 | 257 | 15 | 132 | 1.11e-24 | 100 |
| MS.gene82279.t1 | MTR_5g090110 | 28.854 | 253 | 147 | 7 | 8 | 249 | 28 | 258 | 3.08e-24 | 101 |
| MS.gene82279.t1 | MTR_4g115780 | 28.846 | 260 | 163 | 8 | 8 | 249 | 140 | 395 | 6.78e-20 | 89.4 |
| MS.gene82279.t1 | MTR_4g107920 | 27.381 | 252 | 162 | 7 | 8 | 248 | 20 | 261 | 7.59e-19 | 85.9 |
| MS.gene82279.t1 | MTR_7g026095 | 42.222 | 90 | 34 | 2 | 85 | 174 | 189 | 260 | 2.68e-15 | 74.7 |
| MS.gene82279.t1 | MTR_2g040355 | 63.265 | 49 | 16 | 1 | 188 | 236 | 2 | 48 | 4.33e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82279.t1 | AT1G16030 | 72.868 | 258 | 68 | 1 | 1 | 258 | 1 | 256 | 2.09e-135 | 396 |
| MS.gene82279.t1 | AT1G56410 | 72.510 | 251 | 67 | 1 | 8 | 258 | 9 | 257 | 6.56e-132 | 386 |
| MS.gene82279.t1 | AT5G02500 | 72.112 | 251 | 68 | 1 | 8 | 258 | 9 | 257 | 1.14e-131 | 382 |
| MS.gene82279.t1 | AT5G02500 | 72.112 | 251 | 68 | 1 | 8 | 258 | 9 | 257 | 9.29e-130 | 382 |
| MS.gene82279.t1 | AT3G09440 | 70.916 | 251 | 71 | 1 | 8 | 258 | 9 | 257 | 1.80e-128 | 378 |
| MS.gene82279.t1 | AT3G09440 | 70.916 | 251 | 71 | 1 | 8 | 258 | 9 | 257 | 1.80e-128 | 378 |
| MS.gene82279.t1 | AT3G09440 | 70.916 | 251 | 71 | 1 | 8 | 258 | 9 | 257 | 1.80e-128 | 378 |
| MS.gene82279.t1 | AT3G09440 | 70.916 | 251 | 71 | 1 | 8 | 258 | 9 | 257 | 1.80e-128 | 378 |
| MS.gene82279.t1 | AT3G12580 | 71.713 | 251 | 69 | 1 | 8 | 258 | 9 | 257 | 1.13e-127 | 376 |
| MS.gene82279.t1 | AT5G02490 | 70.120 | 251 | 73 | 1 | 8 | 258 | 9 | 257 | 9.49e-127 | 374 |
| MS.gene82279.t1 | AT1G09080 | 65.873 | 252 | 76 | 4 | 9 | 260 | 43 | 284 | 2.60e-112 | 337 |
| MS.gene82279.t1 | AT1G09080 | 65.873 | 252 | 76 | 4 | 9 | 260 | 53 | 294 | 3.55e-112 | 337 |
| MS.gene82279.t1 | AT5G42020 | 62.308 | 260 | 87 | 5 | 2 | 260 | 31 | 280 | 1.76e-107 | 323 |
| MS.gene82279.t1 | AT5G42020 | 62.308 | 260 | 87 | 5 | 2 | 260 | 31 | 280 | 2.52e-107 | 325 |
| MS.gene82279.t1 | AT5G28540 | 62.308 | 260 | 87 | 5 | 2 | 260 | 31 | 280 | 4.15e-107 | 324 |
| MS.gene82279.t1 | AT5G42020 | 62.308 | 260 | 87 | 5 | 2 | 260 | 36 | 285 | 5.06e-107 | 324 |
| MS.gene82279.t1 | AT4G37910 | 52.419 | 248 | 106 | 5 | 9 | 255 | 55 | 291 | 1.56e-78 | 250 |
| MS.gene82279.t1 | AT4G37910 | 52.419 | 248 | 106 | 5 | 9 | 255 | 55 | 291 | 1.56e-78 | 250 |
| MS.gene82279.t1 | AT5G09590 | 51.613 | 248 | 104 | 6 | 9 | 253 | 60 | 294 | 3.49e-74 | 239 |
| MS.gene82279.t1 | AT4G24280 | 46.586 | 249 | 122 | 5 | 7 | 254 | 79 | 317 | 6.83e-65 | 215 |
| MS.gene82279.t1 | AT5G49910 | 46.457 | 254 | 115 | 6 | 7 | 254 | 79 | 317 | 1.23e-64 | 214 |
| MS.gene82279.t1 | AT1G79930 | 38.776 | 245 | 147 | 2 | 9 | 252 | 4 | 246 | 1.08e-51 | 180 |
| MS.gene82279.t1 | AT1G79930 | 38.776 | 245 | 147 | 2 | 9 | 252 | 4 | 246 | 1.78e-51 | 179 |
| MS.gene82279.t1 | AT1G79920 | 38.367 | 245 | 148 | 2 | 9 | 252 | 4 | 246 | 2.38e-50 | 176 |
| MS.gene82279.t1 | AT1G79920 | 38.367 | 245 | 148 | 2 | 9 | 252 | 4 | 246 | 2.60e-50 | 176 |
| MS.gene82279.t1 | AT1G79920 | 38.367 | 245 | 148 | 2 | 9 | 252 | 4 | 246 | 2.60e-50 | 176 |
| MS.gene82279.t1 | AT1G79920 | 38.367 | 245 | 148 | 2 | 9 | 252 | 4 | 246 | 2.60e-50 | 176 |
| MS.gene82279.t1 | AT1G11660 | 36.220 | 254 | 154 | 4 | 9 | 260 | 4 | 251 | 1.64e-44 | 160 |
| MS.gene82279.t1 | AT1G11660 | 36.220 | 254 | 154 | 4 | 9 | 260 | 4 | 251 | 1.64e-44 | 160 |
| MS.gene82279.t1 | AT1G11660 | 36.220 | 254 | 154 | 4 | 9 | 260 | 4 | 251 | 1.64e-44 | 160 |
| MS.gene82279.t1 | AT1G11660 | 36.530 | 219 | 131 | 4 | 44 | 260 | 2 | 214 | 1.62e-34 | 131 |
| MS.gene82279.t1 | AT2G32120 | 30.000 | 260 | 165 | 7 | 8 | 256 | 30 | 283 | 1.28e-26 | 108 |
| MS.gene82279.t1 | AT2G32120 | 30.000 | 260 | 165 | 7 | 8 | 256 | 30 | 283 | 1.28e-26 | 108 |
| MS.gene82279.t1 | AT4G16660 | 25.283 | 265 | 177 | 5 | 6 | 254 | 48 | 307 | 1.06e-23 | 100 |
| MS.gene82279.t1 | AT4G16660 | 25.283 | 265 | 177 | 5 | 6 | 254 | 24 | 283 | 1.51e-23 | 100 |
Find 63 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAATTGCTGAAACATATT+TGG | 0.113940 | 3.4:-22492471 | MS.gene82279:CDS |
| CATGGTGTTGTCTAAGTTAA+AGG | 0.173778 | 3.4:-22492492 | MS.gene82279:CDS |
| ACTGCAGCTGCTATTGCTTA+TGG | 0.208608 | 3.4:-22492320 | MS.gene82279:CDS |
| TGGTTTGGAACAACCTTAAA+AGG | 0.212043 | 3.4:+22492587 | None:intergenic |
| CAATCACGGGTTTGTCTTTG+TGG | 0.307374 | 3.4:+22492567 | None:intergenic |
| AATGTTCTTGTCTTTGATCT+TGG | 0.331932 | 3.4:-22492263 | MS.gene82279:CDS |
| ACACGGTTCCCTTGGTCGTT+TGG | 0.354947 | 3.4:+22492770 | None:intergenic |
| ACTTTGGGAGATACTCATTT+GGG | 0.360641 | 3.4:-22492179 | MS.gene82279:CDS |
| TTCAAGGTTAAGGCCACTTT+GGG | 0.364020 | 3.4:-22492194 | MS.gene82279:CDS |
| GTCTTGTTGAATTATTTCAT+AGG | 0.370277 | 3.4:-22492124 | MS.gene82279:CDS |
| TTATGTCTTGTTGGACTGAT+TGG | 0.374106 | 3.4:+22492618 | None:intergenic |
| GAAATTGCTGAAACATATTT+GGG | 0.374370 | 3.4:-22492470 | MS.gene82279:CDS |
| ACGGGTTTGTCTTTGTGGTT+TGG | 0.375126 | 3.4:+22492572 | None:intergenic |
| AGCTGCTATTGCTTATGGTT+TGG | 0.376546 | 3.4:-22492315 | MS.gene82279:CDS |
| CACTTTGGGAGATACTCATT+TGG | 0.379211 | 3.4:-22492180 | MS.gene82279:CDS |
| AAAGATGCAGGGAAAATTGC+TGG | 0.381725 | 3.4:-22492374 | MS.gene82279:CDS |
| TCCAACAAGACATAAGGTTT+TGG | 0.384795 | 3.4:-22492610 | MS.gene82279:CDS |
| CGAAGGAATGTTCAAGGTTA+AGG | 0.387070 | 3.4:-22492204 | MS.gene82279:CDS |
| ACCGACACTGAAAGATTAAT+AGG | 0.390230 | 3.4:-22492725 | MS.gene82279:CDS |
| CTTGTCTTTGATCTTGGTGG+TGG | 0.402810 | 3.4:-22492257 | MS.gene82279:CDS |
| TTTGATGCCAAACGTTTGAT+TGG | 0.402974 | 3.4:-22492656 | MS.gene82279:CDS |
| GCCAAAACCTTATGTCTTGT+TGG | 0.404961 | 3.4:+22492609 | None:intergenic |
| GTTCTTGTCTTTGATCTTGG+TGG | 0.414303 | 3.4:-22492260 | MS.gene82279:CDS |
| TTGCTTGTTCTTGTTGCCAT+GGG | 0.420784 | 3.4:+22492866 | None:intergenic |
| GTTCAAGGTTAAGGCCACTT+TGG | 0.441611 | 3.4:-22492195 | MS.gene82279:CDS |
| TTTGCTTGTTCTTGTTGCCA+TGG | 0.461657 | 3.4:+22492865 | None:intergenic |
| TCTTGTTGAATTATTTCATA+GGG | 0.477270 | 3.4:-22492123 | MS.gene82279:CDS |
| GCGACGACCAATCAAACGTT+TGG | 0.486511 | 3.4:+22492649 | None:intergenic |
| TGTACCAAGGTCAATGCCTA+TGG | 0.490620 | 3.4:+22492841 | None:intergenic |
| TCCTTCGTCAACGGTCACTA+AGG | 0.501097 | 3.4:+22492220 | None:intergenic |
| TCGGTGAAGGCAATGTAAGA+AGG | 0.511692 | 3.4:+22492743 | None:intergenic |
| AATCAGTCCAACAAGACATA+AGG | 0.516258 | 3.4:-22492616 | MS.gene82279:CDS |
| AAGGGGTCACACGGTTCCCT+TGG | 0.517703 | 3.4:+22492762 | None:intergenic |
| ACCTATTAATCTTTCAGTGT+CGG | 0.522436 | 3.4:+22492724 | None:intergenic |
| AGACAAGCTACAAAAGATGC+AGG | 0.525606 | 3.4:-22492386 | MS.gene82279:CDS |
| TGTGAGTTGTTGAAGTAAGC+AGG | 0.526143 | 3.4:+22492410 | None:intergenic |
| CGTTGACGAAGGAATGTTCA+AGG | 0.532858 | 3.4:-22492210 | MS.gene82279:CDS |
| TTGTAATTGACAGCAATCAC+GGG | 0.544513 | 3.4:+22492554 | None:intergenic |
| CGGTGAAGGCAATGTAAGAA+GGG | 0.548409 | 3.4:+22492744 | None:intergenic |
| ACCTCAAGAGATATCTTCCA+TGG | 0.553297 | 3.4:-22492510 | MS.gene82279:CDS |
| TTTGTAATTGACAGCAATCA+CGG | 0.553769 | 3.4:+22492553 | None:intergenic |
| CTTGAACATTCCTTCGTCAA+CGG | 0.564856 | 3.4:+22492211 | None:intergenic |
| TAATCTTTCAGTGTCGGTGA+AGG | 0.565703 | 3.4:+22492730 | None:intergenic |
| TTGGGAGATACTCATTTGGG+TGG | 0.571754 | 3.4:-22492176 | MS.gene82279:CDS |
| GACAAGAAAATGTGGAGAGA+AGG | 0.578701 | 3.4:-22492293 | MS.gene82279:CDS |
| TGCAGCTGTAGCTTGTACCA+AGG | 0.595496 | 3.4:+22492828 | None:intergenic |
| ACAAGAACAAGCAAATCCAT+AGG | 0.616984 | 3.4:-22492857 | MS.gene82279:CDS |
| CAATGTAAGAAGGGGTCACA+CGG | 0.617151 | 3.4:+22492753 | None:intergenic |
| TAAGCAATAGCAGCTGCAGT+AGG | 0.618882 | 3.4:+22492323 | None:intergenic |
| GTGATTGCTGTCAATTACAA+AGG | 0.623404 | 3.4:-22492551 | MS.gene82279:CDS |
| AAATCCATAGGCATTGACCT+TGG | 0.630161 | 3.4:-22492845 | MS.gene82279:CDS |
| AGATCATTCCAAACGACCAA+GGG | 0.630317 | 3.4:-22492778 | MS.gene82279:CDS |
| GAGATCATTCCAAACGACCA+AGG | 0.630381 | 3.4:-22492779 | MS.gene82279:CDS |
| ATGGTTTGGACAAGAAAATG+TGG | 0.630603 | 3.4:-22492301 | MS.gene82279:CDS |
| TCCTTAGTGACCGTTGACGA+AGG | 0.634054 | 3.4:-22492221 | MS.gene82279:CDS |
| CAAATGAGTATCTCCCAAAG+TGG | 0.637746 | 3.4:+22492181 | None:intergenic |
| TATGAAATAATTCAACAAGA+CGG | 0.637984 | 3.4:+22492126 | None:intergenic |
| ACCATGGAAGATATCTCTTG+AGG | 0.641800 | 3.4:+22492509 | None:intergenic |
| GACAAGCTACAAAAGATGCA+GGG | 0.645331 | 3.4:-22492385 | MS.gene82279:CDS |
| GGTGAAGGCAATGTAAGAAG+GGG | 0.667252 | 3.4:+22492745 | None:intergenic |
| ATTGCAGTGTGGCGAAACAA+TGG | 0.672404 | 3.4:-22492806 | MS.gene82279:CDS |
| CTTTAACTTAGACAACACCA+TGG | 0.681981 | 3.4:+22492493 | None:intergenic |
| GCTACAGCTGCATTGCAGTG+TGG | 0.691567 | 3.4:-22492817 | MS.gene82279:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGAAATAATTCAACAAGA+CGG | + | chr3.4:22492843-22492862 | None:intergenic | 20.0% |
| !! | TCTTGTTGAATTATTTCATA+GGG | - | chr3.4:22492843-22492862 | MS.gene82279:CDS | 20.0% |
| !!! | TGTTGATTTTGATAACAATT+TGG | - | chr3.4:22492813-22492832 | MS.gene82279:CDS | 20.0% |
| ! | GAAATTGCTGAAACATATTT+GGG | - | chr3.4:22492496-22492515 | MS.gene82279:CDS | 25.0% |
| !! | GTCTTGTTGAATTATTTCAT+AGG | - | chr3.4:22492842-22492861 | MS.gene82279:CDS | 25.0% |
| !!! | ATTTTTGGCTAATTGGTTTA+TGG | + | chr3.4:22492275-22492294 | None:intergenic | 25.0% |
| AATGTTCTTGTCTTTGATCT+TGG | - | chr3.4:22492703-22492722 | MS.gene82279:CDS | 30.0% | |
| ACCTATTAATCTTTCAGTGT+CGG | + | chr3.4:22492245-22492264 | None:intergenic | 30.0% | |
| GGAAATTGCTGAAACATATT+TGG | - | chr3.4:22492495-22492514 | MS.gene82279:CDS | 30.0% | |
| TTTGTAATTGACAGCAATCA+CGG | + | chr3.4:22492416-22492435 | None:intergenic | 30.0% | |
| ! | GAGGTGAAAAATGTTTTTCT+TGG | + | chr3.4:22492441-22492460 | None:intergenic | 30.0% |
| AATCAGTCCAACAAGACATA+AGG | - | chr3.4:22492350-22492369 | MS.gene82279:CDS | 35.0% | |
| ACAAGAACAAGCAAATCCAT+AGG | - | chr3.4:22492109-22492128 | MS.gene82279:CDS | 35.0% | |
| ACCGACACTGAAAGATTAAT+AGG | - | chr3.4:22492241-22492260 | MS.gene82279:CDS | 35.0% | |
| CAAACGTTTGGCATCAAAAA+TGG | + | chr3.4:22492308-22492327 | None:intergenic | 35.0% | |
| GTGATTGCTGTCAATTACAA+AGG | - | chr3.4:22492415-22492434 | MS.gene82279:CDS | 35.0% | |
| TTGTAATTGACAGCAATCAC+GGG | + | chr3.4:22492415-22492434 | None:intergenic | 35.0% | |
| TTTGATGCCAAACGTTTGAT+TGG | - | chr3.4:22492310-22492329 | MS.gene82279:CDS | 35.0% | |
| ! | ACTTTGGGAGATACTCATTT+GGG | - | chr3.4:22492787-22492806 | MS.gene82279:CDS | 35.0% |
| ! | ATGGTTTGGACAAGAAAATG+TGG | - | chr3.4:22492665-22492684 | MS.gene82279:CDS | 35.0% |
| ! | CTTTAACTTAGACAACACCA+TGG | + | chr3.4:22492476-22492495 | None:intergenic | 35.0% |
| ! | TCCAACAAGACATAAGGTTT+TGG | - | chr3.4:22492356-22492375 | MS.gene82279:CDS | 35.0% |
| ! | TGGTTTGGAACAACCTTAAA+AGG | + | chr3.4:22492382-22492401 | None:intergenic | 35.0% |
| ! | TTATGTCTTGTTGGACTGAT+TGG | + | chr3.4:22492351-22492370 | None:intergenic | 35.0% |
| !! | CATAAGGTTTTGGCCTTTTA+AGG | - | chr3.4:22492366-22492385 | MS.gene82279:CDS | 35.0% |
| !! | CATGGTGTTGTCTAAGTTAA+AGG | - | chr3.4:22492474-22492493 | MS.gene82279:CDS | 35.0% |
| !!! | AATGGTGTTGTGTGGATTTT+TGG | + | chr3.4:22492290-22492309 | None:intergenic | 35.0% |
| !!! | TGTGTGGATTTTTGGCTAAT+TGG | + | chr3.4:22492282-22492301 | None:intergenic | 35.0% |
| !!! | TTGCTGGTTTTAATGTGATG+AGG | - | chr3.4:22492608-22492627 | MS.gene82279:CDS | 35.0% |
| AAAGATGCAGGGAAAATTGC+TGG | - | chr3.4:22492592-22492611 | MS.gene82279:CDS | 40.0% | |
| ACCATGGAAGATATCTCTTG+AGG | + | chr3.4:22492460-22492479 | None:intergenic | 40.0% | |
| ACCTCAAGAGATATCTTCCA+TGG | - | chr3.4:22492456-22492475 | MS.gene82279:CDS | 40.0% | |
| AGACAAGCTACAAAAGATGC+AGG | - | chr3.4:22492580-22492599 | MS.gene82279:CDS | 40.0% | |
| AGATCATTCCAAACGACCAA+GGG | - | chr3.4:22492188-22492207 | MS.gene82279:CDS | 40.0% | |
| AGCTGCTATTGCTTATGGTT+TGG | - | chr3.4:22492651-22492670 | MS.gene82279:CDS | 40.0% | |
| CAAATGAGTATCTCCCAAAG+TGG | + | chr3.4:22492788-22492807 | None:intergenic | 40.0% | |
| CGAAGGAATGTTCAAGGTTA+AGG | - | chr3.4:22492762-22492781 | MS.gene82279:CDS | 40.0% | |
| CTTGAACATTCCTTCGTCAA+CGG | + | chr3.4:22492758-22492777 | None:intergenic | 40.0% | |
| GACAAGAAAATGTGGAGAGA+AGG | - | chr3.4:22492673-22492692 | MS.gene82279:CDS | 40.0% | |
| GACAAGCTACAAAAGATGCA+GGG | - | chr3.4:22492581-22492600 | MS.gene82279:CDS | 40.0% | |
| GCCAAAACCTTATGTCTTGT+TGG | + | chr3.4:22492360-22492379 | None:intergenic | 40.0% | |
| GTTCTTGTCTTTGATCTTGG+TGG | - | chr3.4:22492706-22492725 | MS.gene82279:CDS | 40.0% | |
| TGTGAGTTGTTGAAGTAAGC+AGG | + | chr3.4:22492559-22492578 | None:intergenic | 40.0% | |
| ! | CACTTTGGGAGATACTCATT+TGG | - | chr3.4:22492786-22492805 | MS.gene82279:CDS | 40.0% |
| ! | TTCAAGGTTAAGGCCACTTT+GGG | - | chr3.4:22492772-22492791 | MS.gene82279:CDS | 40.0% |
| !! | AAATCCATAGGCATTGACCT+TGG | - | chr3.4:22492121-22492140 | MS.gene82279:CDS | 40.0% |
| !! | GCATCAAAAATGGTGTTGTG+TGG | + | chr3.4:22492298-22492317 | None:intergenic | 40.0% |
| !! | TAATCTTTCAGTGTCGGTGA+AGG | + | chr3.4:22492239-22492258 | None:intergenic | 40.0% |
| ACGGGTTTGTCTTTGTGGTT+TGG | + | chr3.4:22492397-22492416 | None:intergenic | 45.0% | |
| ACTGCAGCTGCTATTGCTTA+TGG | - | chr3.4:22492646-22492665 | MS.gene82279:CDS | 45.0% | |
| ATTGCAGTGTGGCGAAACAA+TGG | - | chr3.4:22492160-22492179 | MS.gene82279:CDS | 45.0% | |
| CAATCACGGGTTTGTCTTTG+TGG | + | chr3.4:22492402-22492421 | None:intergenic | 45.0% | |
| CAATGTAAGAAGGGGTCACA+CGG | + | chr3.4:22492216-22492235 | None:intergenic | 45.0% | |
| CGGTGAAGGCAATGTAAGAA+GGG | + | chr3.4:22492225-22492244 | None:intergenic | 45.0% | |
| CGTTGACGAAGGAATGTTCA+AGG | - | chr3.4:22492756-22492775 | MS.gene82279:CDS | 45.0% | |
| CTTGTCTTTGATCTTGGTGG+TGG | - | chr3.4:22492709-22492728 | MS.gene82279:CDS | 45.0% | |
| GAGATCATTCCAAACGACCA+AGG | - | chr3.4:22492187-22492206 | MS.gene82279:CDS | 45.0% | |
| GGTGAAGGCAATGTAAGAAG+GGG | + | chr3.4:22492224-22492243 | None:intergenic | 45.0% | |
| GTTCAAGGTTAAGGCCACTT+TGG | - | chr3.4:22492771-22492790 | MS.gene82279:CDS | 45.0% | |
| TAAGCAATAGCAGCTGCAGT+AGG | + | chr3.4:22492646-22492665 | None:intergenic | 45.0% | |
| TCGGTGAAGGCAATGTAAGA+AGG | + | chr3.4:22492226-22492245 | None:intergenic | 45.0% | |
| TGTACCAAGGTCAATGCCTA+TGG | + | chr3.4:22492128-22492147 | None:intergenic | 45.0% | |
| TTGGGAGATACTCATTTGGG+TGG | - | chr3.4:22492790-22492809 | MS.gene82279:CDS | 45.0% | |
| GCGACGACCAATCAAACGTT+TGG | + | chr3.4:22492320-22492339 | None:intergenic | 50.0% | |
| TCCTTAGTGACCGTTGACGA+AGG | - | chr3.4:22492745-22492764 | MS.gene82279:CDS | 50.0% | |
| TCCTTCGTCAACGGTCACTA+AGG | + | chr3.4:22492749-22492768 | None:intergenic | 50.0% | |
| ! | TGCAGCTGTAGCTTGTACCA+AGG | + | chr3.4:22492141-22492160 | None:intergenic | 50.0% |
| ACACGGTTCCCTTGGTCGTT+TGG | + | chr3.4:22492199-22492218 | None:intergenic | 55.0% | |
| GCTACAGCTGCATTGCAGTG+TGG | - | chr3.4:22492149-22492168 | MS.gene82279:CDS | 55.0% | |
| AAGGGGTCACACGGTTCCCT+TGG | + | chr3.4:22492207-22492226 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 22492103 | 22492885 | 22492103 | ID=MS.gene82279 |
| chr3.4 | mRNA | 22492103 | 22492885 | 22492103 | ID=MS.gene82279.t1;Parent=MS.gene82279 |
| chr3.4 | exon | 22492103 | 22492885 | 22492103 | ID=MS.gene82279.t1.exon1;Parent=MS.gene82279.t1 |
| chr3.4 | CDS | 22492103 | 22492885 | 22492103 | ID=cds.MS.gene82279.t1;Parent=MS.gene82279.t1 |
| Gene Sequence |
| Protein sequence |
