Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82399.t1 | XP_013456788.1 | 95.9 | 607 | 17 | 2 | 1 | 599 | 38 | 644 | 5.40E-247 | 863.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82399.t1 | A2WNF5 | 51.1 | 607 | 262 | 6 | 1 | 599 | 35 | 614 | 1.6e-98 | 361.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82399.t1 | A0A072UM12 | 95.9 | 607 | 17 | 2 | 1 | 599 | 38 | 644 | 3.9e-247 | 863.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050297 | MS.gene82399 | 0.800031 | 1.74E-48 | -1.69E-46 |
MS.gene050894 | MS.gene82399 | 0.806454 | 8.16E-50 | -1.69E-46 |
MS.gene058550 | MS.gene82399 | 0.815978 | 7.01E-52 | -1.69E-46 |
MS.gene061260 | MS.gene82399 | 0.804786 | 1.83E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 135 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACAACTCATCACGGCTTTC+TGG | 0.130781 | 4.2:-26185587 | None:intergenic |
CCAGCCTCCCAGCATGTATT+TGG | 0.202598 | 4.2:-26179424 | None:intergenic |
GGCCATTCCACCACCCGTTT+GGG | 0.243752 | 4.2:+26184475 | MS.gene82399:CDS |
AAAGAAGAAAGTATACTTAA+AGG | 0.252920 | 4.2:+26179577 | MS.gene82399:CDS |
TCCTGGCTAGCCTGTTTATA+GGG | 0.289800 | 4.2:-26184448 | None:intergenic |
AATTCCTGTATCTTCTTCAT+TGG | 0.303497 | 4.2:-26180441 | None:intergenic |
AAGAAGAAAGTATACTTAAA+GGG | 0.318461 | 4.2:+26179578 | MS.gene82399:CDS |
AATGAATAAAACTCCTTTGC+TGG | 0.318818 | 4.2:-26184253 | None:intergenic |
GGGCCATTCCACCACCCGTT+TGG | 0.326302 | 4.2:+26184474 | MS.gene82399:CDS |
TGAGGATTCATACAAAATAA+TGG | 0.332168 | 4.2:+26184653 | MS.gene82399:CDS |
CTCCTGGCTAGCCTGTTTAT+AGG | 0.335387 | 4.2:-26184449 | None:intergenic |
CAGCCTCCCAGCATGTATTT+GGG | 0.344775 | 4.2:-26179423 | None:intergenic |
TTTCTAATGGTGATCATTGC+TGG | 0.357080 | 4.2:+26184679 | MS.gene82399:CDS |
TCTGAAACTGATTTGACAAC+TGG | 0.358865 | 4.2:+26181268 | MS.gene82399:CDS |
ATCTGTATGGAATATTATTC+AGG | 0.371491 | 4.2:+26183908 | MS.gene82399:CDS |
TATATCTTCGTCATATTTGC+CGG | 0.384323 | 4.2:-26183672 | None:intergenic |
TTTCTTCCTGACAAAGGGCT+GGG | 0.402523 | 4.2:-26185436 | None:intergenic |
CATACCTTCAAACTCCTATC+AGG | 0.404765 | 4.2:-26184708 | None:intergenic |
CCAAATACATGCTGGGAGGC+TGG | 0.405666 | 4.2:+26179424 | MS.gene82399:CDS |
CTGACTGATTCACGGGTGTC+TGG | 0.405932 | 4.2:-26183944 | None:intergenic |
CTACGCAGATACCGTATTGA+TGG | 0.406515 | 4.2:-26181314 | None:intergenic |
AGAGGGCTCTCCGGTTGATC+AGG | 0.406967 | 4.2:+26180538 | MS.gene82399:CDS |
CAAAGTCTGCCCCTATAAAC+AGG | 0.407002 | 4.2:+26184438 | MS.gene82399:CDS |
CAAGCTAGACCTACTGAATT+CGG | 0.417093 | 4.2:+26185559 | MS.gene82399:CDS |
TTCATTGTCTAATGCAGTGT+TGG | 0.417389 | 4.2:-26183555 | None:intergenic |
TGGTGGAATGGCCCTCCTCC+TGG | 0.417770 | 4.2:-26184465 | None:intergenic |
AGCAATTGAACACGCACATT+TGG | 0.418179 | 4.2:+26179516 | MS.gene82399:CDS |
CCAGGTTCATCGGTGCCATC+GGG | 0.421592 | 4.2:-26178303 | None:intergenic |
TACAATCGAACCTGATCAAC+CGG | 0.423911 | 4.2:-26180548 | None:intergenic |
TACCAAAACCTTACCCCAAA+CGG | 0.426842 | 4.2:-26184489 | None:intergenic |
CCCCTATAAACAGGCTAGCC+AGG | 0.438029 | 4.2:+26184447 | MS.gene82399:CDS |
CTGATCTTTGTTGAAATTAG+CGG | 0.439746 | 4.2:-26178256 | None:intergenic |
CTTGTTGCTTCACGTTGGAC+AGG | 0.441661 | 4.2:+26183503 | MS.gene82399:CDS |
AGGATCCTTGTTTGATAAAG+TGG | 0.441971 | 4.2:+26181072 | MS.gene82399:CDS |
AGCCACCCCAGCCCTTTGTC+AGG | 0.449068 | 4.2:+26185430 | MS.gene82399:CDS |
GGGGTTGTGAAACAGTTAAA+AGG | 0.449128 | 4.2:+26179598 | MS.gene82399:CDS |
CAGGCGCTGGGACAAATTTG+AGG | 0.449184 | 4.2:+26184635 | MS.gene82399:intron |
ACCAGGTTCATCGGTGCCAT+CGG | 0.449789 | 4.2:-26178304 | None:intergenic |
GAGAGTGAACCAGACTTGTC+AGG | 0.450153 | 4.2:+26183758 | MS.gene82399:CDS |
AATAGACAAGGCTGAGGAAA+AGG | 0.453522 | 4.2:+26180343 | MS.gene82399:CDS |
GGTGTCATCGTCATATTTGC+CGG | 0.457149 | 4.2:-26183651 | None:intergenic |
ATTGCTGGAACGGTCCTGAT+AGG | 0.460707 | 4.2:+26184694 | MS.gene82399:CDS |
AAAAGAAGAGAAACAGAAGA+AGG | 0.462480 | 4.2:+26180382 | MS.gene82399:CDS |
GAAGAAGGAGGCTGAGGAAA+AGG | 0.463951 | 4.2:+26180397 | MS.gene82399:CDS |
CCCGATGGCACCGATGAACC+TGG | 0.467529 | 4.2:+26178303 | MS.gene82399:CDS |
ACTTTCTTATAGGATGAAGC+TGG | 0.469184 | 4.2:+26180992 | MS.gene82399:intron |
ACCAAAACCTTACCCCAAAC+GGG | 0.470971 | 4.2:-26184488 | None:intergenic |
AGAAAATACAGAAATCTGTA+TGG | 0.474370 | 4.2:+26183895 | MS.gene82399:CDS |
ACCTTACCCCAAACGGGTGG+TGG | 0.480378 | 4.2:-26184482 | None:intergenic |
TGCATTAGACAATGAAGATC+AGG | 0.480617 | 4.2:+26183562 | MS.gene82399:CDS |
ACCCCAAACGGGTGGTGGAA+TGG | 0.481723 | 4.2:-26184477 | None:intergenic |
TGAGAAAATTGAAGTTAAAG+AGG | 0.483030 | 4.2:+26180520 | MS.gene82399:CDS |
TATAACAAACCTGACAAGTC+TGG | 0.483214 | 4.2:-26183767 | None:intergenic |
AAAACCAATGAAGAAGATAC+AGG | 0.483963 | 4.2:+26180437 | MS.gene82399:CDS |
TTCTTCCTGACAAAGGGCTG+GGG | 0.488589 | 4.2:-26185435 | None:intergenic |
CTCTTCCACTTTATCAAACA+AGG | 0.488744 | 4.2:-26181077 | None:intergenic |
CTTTCTTATAGGATGAAGCT+GGG | 0.488948 | 4.2:+26180993 | MS.gene82399:intron |
CTTGTTTGATAAAGTGGAAG+AGG | 0.495036 | 4.2:+26181078 | MS.gene82399:CDS |
CAAATACATGCTGGGAGGCT+GGG | 0.498891 | 4.2:+26179425 | MS.gene82399:CDS |
CTGGTTGTTCCGAATTCAGT+AGG | 0.499226 | 4.2:-26185568 | None:intergenic |
TTCCTGACAAAGGGCTGGGG+TGG | 0.501335 | 4.2:-26185432 | None:intergenic |
CAAAGTGCCCAAATACATGC+TGG | 0.502257 | 4.2:+26179416 | MS.gene82399:CDS |
CAGATTTGTATGAGGAACTA+AGG | 0.503712 | 4.2:-26183730 | None:intergenic |
TGAACACGCACATTTGGCTC+TGG | 0.506028 | 4.2:+26179522 | MS.gene82399:CDS |
CAGACACCCGTGAATCAGTC+AGG | 0.506973 | 4.2:+26183945 | MS.gene82399:CDS |
TGAAGTTAAAGAGGGCTCTC+CGG | 0.513998 | 4.2:+26180529 | MS.gene82399:CDS |
GGATTGTCAAAGGAAGAATT+AGG | 0.518607 | 4.2:+26183476 | MS.gene82399:CDS |
CGCACATTTGGCTCTGGAGA+AGG | 0.520642 | 4.2:+26179528 | MS.gene82399:CDS |
GAAACAGAAGAAGGAGGCTG+AGG | 0.526794 | 4.2:+26180391 | MS.gene82399:CDS |
TTTGACGCCCTCTTGATATG+TGG | 0.528509 | 4.2:-26179482 | None:intergenic |
GCACAACAGATGACCCTTCG+TGG | 0.528602 | 4.2:+26183868 | MS.gene82399:CDS |
ATGTCTACCTGACTGATTCA+CGG | 0.529282 | 4.2:-26183952 | None:intergenic |
TCCTTCACTTTCAGAATCAG+TGG | 0.530933 | 4.2:-26181053 | None:intergenic |
GATGTAATAAGATGTAAAGA+TGG | 0.532369 | 4.2:+26178231 | MS.gene82399:CDS |
AATCCCTACTCGCAACGGCT+TGG | 0.532996 | 4.2:-26185285 | None:intergenic |
CGGTCCTGATAGGAGTTTGA+AGG | 0.533208 | 4.2:+26184704 | MS.gene82399:CDS |
GAAGCATCTGAGAATACTGA+TGG | 0.537435 | 4.2:+26183455 | MS.gene82399:CDS |
TGTCTACCTGACTGATTCAC+GGG | 0.537621 | 4.2:-26183951 | None:intergenic |
GATTTCTGCGATTGCCCCGA+TGG | 0.539680 | 4.2:+26178288 | MS.gene82399:CDS |
ACAAATAATGAAGAGAATGA+AGG | 0.542197 | 4.2:+26183602 | MS.gene82399:CDS |
TTCTGATGAAGCCATCAATA+CGG | 0.542935 | 4.2:+26181303 | MS.gene82399:CDS |
AGAAGAAAGTATACTTAAAG+GGG | 0.543603 | 4.2:+26179579 | MS.gene82399:CDS |
GGGTGTCTGGAATATATTGA+CGG | 0.546399 | 4.2:-26183931 | None:intergenic |
CGAGTCAATGATGGAATTTG+CGG | 0.553365 | 4.2:+26178484 | MS.gene82399:CDS |
AGAATTGAAACCAGGTTCAT+CGG | 0.554450 | 4.2:-26178313 | None:intergenic |
CTTTGGTATTGCAGGTACAT+CGG | 0.554528 | 4.2:+26178396 | MS.gene82399:intron |
CGAGACGAAAACAGAGACAC+AGG | 0.554823 | 4.2:-26178463 | None:intergenic |
TAAACAGGCTAGCCAGGAGG+AGG | 0.555074 | 4.2:+26184453 | MS.gene82399:CDS |
TTATGTTTAGATTGCTGTGA+TGG | 0.562355 | 4.2:+26179370 | MS.gene82399:intron |
TGTCAAAGGAAGAATTAGGC+AGG | 0.563992 | 4.2:+26183480 | MS.gene82399:CDS |
CTCAACGTCAGATTTGTATG+AGG | 0.565568 | 4.2:-26183738 | None:intergenic |
AACAGGTCAAGCTAAAATGC+GGG | 0.566211 | 4.2:+26185232 | MS.gene82399:intron |
GAGAAAATTGAAGTTAAAGA+GGG | 0.567079 | 4.2:+26180521 | MS.gene82399:CDS |
GAATGCAAAAGAAGCTGAGA+GGG | 0.568138 | 4.2:+26181231 | MS.gene82399:intron |
AATGGTGATCATTGCTGGAA+CGG | 0.578500 | 4.2:+26184684 | MS.gene82399:CDS |
GGAAAAGGAGCGTTTACAGA+AGG | 0.581537 | 4.2:+26180358 | MS.gene82399:CDS |
CGTTGGACAGGAGAAGATGT+TGG | 0.584656 | 4.2:+26183515 | MS.gene82399:CDS |
TTTGGCTCTGGAGAAGGATG+AGG | 0.585737 | 4.2:+26179534 | MS.gene82399:CDS |
GCAGGCTTGTTGCTTCACGT+TGG | 0.589123 | 4.2:+26183498 | MS.gene82399:CDS |
AAACGATGAAGAATTTCAAG+AGG | 0.591771 | 4.2:+26183694 | MS.gene82399:CDS |
GCCATTCCACCACCCGTTTG+GGG | 0.596501 | 4.2:+26184476 | MS.gene82399:CDS |
GAATACTGATGGATTGTCAA+AGG | 0.597321 | 4.2:+26183466 | MS.gene82399:CDS |
CCTGGCTAGCCTGTTTATAG+GGG | 0.604222 | 4.2:-26184447 | None:intergenic |
TACAGGAATTGAAAATGAAG+CGG | 0.607388 | 4.2:+26180454 | MS.gene82399:CDS |
AAAGTGCCCAAATACATGCT+GGG | 0.607920 | 4.2:+26179417 | MS.gene82399:CDS |
GAACAGGTCAAGCTAAAATG+CGG | 0.608720 | 4.2:+26185231 | MS.gene82399:intron |
AACTGATTTGACAACTGGAA+AGG | 0.613288 | 4.2:+26181273 | MS.gene82399:CDS |
ATAACAATCCCTACTCGCAA+CGG | 0.613583 | 4.2:-26185290 | None:intergenic |
AAAGATTGCCACATATCAAG+AGG | 0.614060 | 4.2:+26179474 | MS.gene82399:CDS |
GGCAAATATGACGATGACAC+CGG | 0.616567 | 4.2:+26183653 | MS.gene82399:CDS |
AGAAGAGAAACAGAAGAAGG+AGG | 0.617934 | 4.2:+26180385 | MS.gene82399:CDS |
GCCACTGATTCTGAAAGTGA+AGG | 0.619286 | 4.2:+26181052 | MS.gene82399:CDS |
AGAACAAATAGACAAGGCTG+AGG | 0.625081 | 4.2:+26180337 | MS.gene82399:CDS |
AGATGCTGCTCGTATACGCA+AGG | 0.627154 | 4.2:+26184043 | MS.gene82399:intron |
TCTGAAACTGACGACGACAC+CGG | 0.629370 | 4.2:+26183632 | MS.gene82399:CDS |
CAATGCTACAGGTCCAGCAA+AGG | 0.629416 | 4.2:+26184240 | MS.gene82399:intron |
GAGACGAAAACAGAGACACA+GGG | 0.636956 | 4.2:-26178462 | None:intergenic |
TTTCTCATGAATACTTGCCG+CGG | 0.637229 | 4.2:-26180504 | None:intergenic |
GATGGAAGTGATGAATATGA+TGG | 0.639953 | 4.2:+26179388 | MS.gene82399:CDS |
ATCAGTTTCAGATTCAACAG+TGG | 0.643721 | 4.2:-26181257 | None:intergenic |
TTTCTTATAGGATGAAGCTG+GGG | 0.646594 | 4.2:+26180994 | MS.gene82399:intron |
TTGTCAGGAAGAAAAGCTGA+AGG | 0.652990 | 4.2:+26185445 | MS.gene82399:CDS |
AAGATTGCCACATATCAAGA+GGG | 0.666614 | 4.2:+26179475 | MS.gene82399:CDS |
GGTACATCGGCGTGTCCGCG+TGG | 0.670391 | 4.2:+26178409 | MS.gene82399:intron |
AAACAGGCTAGCCAGGAGGA+GGG | 0.674511 | 4.2:+26184454 | MS.gene82399:CDS |
ATCAGGAAGATATTCTACAC+GGG | 0.675112 | 4.2:+26183579 | MS.gene82399:CDS |
GATCAGGAAGATATTCTACA+CGG | 0.678925 | 4.2:+26183578 | MS.gene82399:CDS |
AGAATGCAAAAGAAGCTGAG+AGG | 0.679629 | 4.2:+26181230 | MS.gene82399:intron |
AAAACCTTACCCCAAACGGG+TGG | 0.683329 | 4.2:-26184485 | None:intergenic |
TCATAAAGAACAAATAGACA+AGG | 0.689258 | 4.2:+26180331 | MS.gene82399:CDS |
CTATAAACAGGCTAGCCAGG+AGG | 0.720671 | 4.2:+26184450 | MS.gene82399:CDS |
AGACATCAAAGACAATTCCG+CGG | 0.722504 | 4.2:+26180487 | MS.gene82399:CDS |
CAGGTTCATCGGTGCCATCG+GGG | 0.723293 | 4.2:-26178302 | None:intergenic |
GTGCCCAAATACATGCTGGG+AGG | 0.724802 | 4.2:+26179420 | MS.gene82399:CDS |
AGACGAAAACAGAGACACAG+GGG | 0.769467 | 4.2:-26178461 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 26178208 | 26185610 | 26178208 | ID=MS.gene82399 |
chr4.2 | mRNA | 26178208 | 26185610 | 26178208 | ID=MS.gene82399.t1;Parent=MS.gene82399 |
chr4.2 | exon | 26178208 | 26178324 | 26178208 | ID=MS.gene82399.t1.exon1;Parent=MS.gene82399.t1 |
chr4.2 | CDS | 26178208 | 26178324 | 26178208 | ID=cds.MS.gene82399.t1;Parent=MS.gene82399.t1 |
chr4.2 | exon | 26178410 | 26178505 | 26178410 | ID=MS.gene82399.t1.exon2;Parent=MS.gene82399.t1 |
chr4.2 | CDS | 26178410 | 26178505 | 26178410 | ID=cds.MS.gene82399.t1;Parent=MS.gene82399.t1 |
chr4.2 | exon | 26179380 | 26179619 | 26179380 | ID=MS.gene82399.t1.exon3;Parent=MS.gene82399.t1 |
chr4.2 | CDS | 26179380 | 26179619 | 26179380 | ID=cds.MS.gene82399.t1;Parent=MS.gene82399.t1 |
chr4.2 | exon | 26180330 | 26180559 | 26180330 | ID=MS.gene82399.t1.exon4;Parent=MS.gene82399.t1 |
chr4.2 | CDS | 26180330 | 26180559 | 26180330 | ID=cds.MS.gene82399.t1;Parent=MS.gene82399.t1 |
chr4.2 | exon | 26181004 | 26181099 | 26181004 | ID=MS.gene82399.t1.exon5;Parent=MS.gene82399.t1 |
chr4.2 | CDS | 26181004 | 26181099 | 26181004 | ID=cds.MS.gene82399.t1;Parent=MS.gene82399.t1 |
chr4.2 | exon | 26181232 | 26181324 | 26181232 | ID=MS.gene82399.t1.exon6;Parent=MS.gene82399.t1 |
chr4.2 | CDS | 26181232 | 26181324 | 26181232 | ID=cds.MS.gene82399.t1;Parent=MS.gene82399.t1 |
chr4.2 | exon | 26183449 | 26183779 | 26183449 | ID=MS.gene82399.t1.exon7;Parent=MS.gene82399.t1 |
chr4.2 | CDS | 26183449 | 26183779 | 26183449 | ID=cds.MS.gene82399.t1;Parent=MS.gene82399.t1 |
chr4.2 | exon | 26183862 | 26183966 | 26183862 | ID=MS.gene82399.t1.exon8;Parent=MS.gene82399.t1 |
chr4.2 | CDS | 26183862 | 26183966 | 26183862 | ID=cds.MS.gene82399.t1;Parent=MS.gene82399.t1 |
chr4.2 | exon | 26184045 | 26184146 | 26184045 | ID=MS.gene82399.t1.exon9;Parent=MS.gene82399.t1 |
chr4.2 | CDS | 26184045 | 26184146 | 26184045 | ID=cds.MS.gene82399.t1;Parent=MS.gene82399.t1 |
chr4.2 | exon | 26184251 | 26184308 | 26184251 | ID=MS.gene82399.t1.exon10;Parent=MS.gene82399.t1 |
chr4.2 | CDS | 26184251 | 26184308 | 26184251 | ID=cds.MS.gene82399.t1;Parent=MS.gene82399.t1 |
chr4.2 | exon | 26184429 | 26184497 | 26184429 | ID=MS.gene82399.t1.exon11;Parent=MS.gene82399.t1 |
chr4.2 | CDS | 26184429 | 26184497 | 26184429 | ID=cds.MS.gene82399.t1;Parent=MS.gene82399.t1 |
chr4.2 | exon | 26184638 | 26184725 | 26184638 | ID=MS.gene82399.t1.exon12;Parent=MS.gene82399.t1 |
chr4.2 | CDS | 26184638 | 26184725 | 26184638 | ID=cds.MS.gene82399.t1;Parent=MS.gene82399.t1 |
chr4.2 | exon | 26185237 | 26185298 | 26185237 | ID=MS.gene82399.t1.exon13;Parent=MS.gene82399.t1 |
chr4.2 | CDS | 26185237 | 26185298 | 26185237 | ID=cds.MS.gene82399.t1;Parent=MS.gene82399.t1 |
chr4.2 | exon | 26185415 | 26185466 | 26185415 | ID=MS.gene82399.t1.exon14;Parent=MS.gene82399.t1 |
chr4.2 | CDS | 26185415 | 26185466 | 26185415 | ID=cds.MS.gene82399.t1;Parent=MS.gene82399.t1 |
chr4.2 | exon | 26185548 | 26185610 | 26185548 | ID=MS.gene82399.t1.exon15;Parent=MS.gene82399.t1 |
chr4.2 | CDS | 26185548 | 26185610 | 26185548 | ID=cds.MS.gene82399.t1;Parent=MS.gene82399.t1 |
Gene Sequence |
Protein sequence |