Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82460.t1 | XP_003612482.1 | 88.9 | 135 | 14 | 1 | 1 | 135 | 1 | 134 | 1.30E-39 | 172.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82460.t1 | Q08747 | 48.6 | 74 | 36 | 2 | 60 | 133 | 124 | 195 | 3.3e-12 | 72.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82460.t1 | G7K408 | 88.9 | 135 | 14 | 1 | 1 | 135 | 1 | 134 | 9.3e-40 | 172.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene82460.t1 | TR | SWI/SNF-BAF60b |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene82460 | MS.gene73121 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82460.t1 | MTR_5g025500 | 95.556 | 135 | 5 | 1 | 1 | 135 | 1 | 134 | 3.18e-88 | 253 |
| MS.gene82460.t1 | MTR_5g005200 | 47.436 | 78 | 41 | 0 | 55 | 132 | 65 | 142 | 1.01e-23 | 89.7 |
| MS.gene82460.t1 | MTR_5g018010 | 44.048 | 84 | 45 | 2 | 52 | 134 | 183 | 265 | 8.20e-19 | 79.7 |
| MS.gene82460.t1 | MTR_5g018010 | 42.466 | 73 | 41 | 1 | 58 | 130 | 57 | 128 | 1.81e-17 | 76.3 |
| MS.gene82460.t1 | MTR_5g018010 | 44.048 | 84 | 45 | 2 | 52 | 134 | 260 | 342 | 1.29e-18 | 80.5 |
| MS.gene82460.t1 | MTR_5g018010 | 42.466 | 73 | 41 | 1 | 58 | 130 | 134 | 205 | 2.29e-17 | 77.0 |
| MS.gene82460.t1 | MTR_3g055330 | 43.210 | 81 | 45 | 1 | 52 | 132 | 156 | 235 | 7.71e-18 | 77.8 |
| MS.gene82460.t1 | MTR_3g055330 | 43.210 | 81 | 45 | 1 | 52 | 132 | 156 | 235 | 9.73e-18 | 77.8 |
| MS.gene82460.t1 | MTR_5g025520 | 37.662 | 77 | 48 | 0 | 55 | 131 | 26 | 102 | 2.47e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82460.t1 | AT2G35605 | 57.252 | 131 | 32 | 4 | 4 | 134 | 2 | 108 | 1.40e-39 | 129 |
| MS.gene82460.t1 | AT1G31760 | 61.616 | 99 | 37 | 1 | 37 | 134 | 13 | 111 | 3.04e-36 | 120 |
| MS.gene82460.t1 | AT3G03590 | 60.000 | 80 | 32 | 0 | 55 | 134 | 63 | 142 | 1.37e-31 | 110 |
| MS.gene82460.t1 | AT2G14880 | 52.564 | 78 | 37 | 0 | 55 | 132 | 64 | 141 | 1.83e-29 | 104 |
| MS.gene82460.t1 | AT4G34290 | 47.674 | 86 | 45 | 0 | 47 | 132 | 59 | 144 | 1.69e-28 | 102 |
| MS.gene82460.t1 | AT3G48600 | 47.475 | 99 | 48 | 2 | 37 | 131 | 13 | 111 | 4.00e-23 | 89.4 |
| MS.gene82460.t1 | AT3G48600 | 47.475 | 99 | 48 | 2 | 37 | 131 | 13 | 111 | 1.25e-22 | 89.4 |
| MS.gene82460.t1 | AT4G26810 | 40.230 | 87 | 52 | 0 | 47 | 133 | 11 | 97 | 1.55e-18 | 75.5 |
| MS.gene82460.t1 | AT4G26810 | 40.230 | 87 | 52 | 0 | 47 | 133 | 11 | 97 | 1.55e-18 | 75.5 |
| MS.gene82460.t1 | AT4G22360 | 39.252 | 107 | 61 | 2 | 29 | 132 | 167 | 272 | 1.65e-18 | 80.5 |
| MS.gene82460.t1 | AT1G49520 | 42.308 | 78 | 44 | 1 | 54 | 131 | 249 | 325 | 3.54e-15 | 70.9 |
| MS.gene82460.t1 | AT1G49520 | 38.462 | 78 | 47 | 1 | 54 | 131 | 100 | 176 | 2.80e-14 | 68.6 |
| MS.gene82460.t1 | AT3G19080 | 42.500 | 80 | 45 | 1 | 51 | 130 | 259 | 337 | 1.34e-14 | 69.7 |
| MS.gene82460.t1 | AT3G19080 | 38.750 | 80 | 48 | 1 | 51 | 130 | 111 | 189 | 3.43e-12 | 62.8 |
| MS.gene82460.t1 | AT3G19080 | 48.387 | 62 | 32 | 0 | 51 | 112 | 259 | 320 | 2.43e-14 | 68.9 |
| MS.gene82460.t1 | AT3G19080 | 40.260 | 77 | 43 | 2 | 60 | 134 | 385 | 460 | 7.79e-13 | 64.3 |
| MS.gene82460.t1 | AT3G19080 | 38.750 | 80 | 48 | 1 | 51 | 130 | 111 | 189 | 5.95e-12 | 62.0 |
| MS.gene82460.t1 | AT3G19080 | 48.387 | 62 | 32 | 0 | 51 | 112 | 259 | 320 | 2.46e-14 | 68.9 |
| MS.gene82460.t1 | AT3G19080 | 40.260 | 77 | 43 | 2 | 60 | 134 | 387 | 462 | 7.88e-13 | 64.3 |
| MS.gene82460.t1 | AT3G19080 | 38.750 | 80 | 48 | 1 | 51 | 130 | 111 | 189 | 5.95e-12 | 62.0 |
| MS.gene82460.t1 | AT3G19080 | 48.387 | 62 | 32 | 0 | 51 | 112 | 259 | 320 | 2.46e-14 | 68.9 |
| MS.gene82460.t1 | AT3G19080 | 40.260 | 77 | 43 | 2 | 60 | 134 | 387 | 462 | 7.88e-13 | 64.3 |
| MS.gene82460.t1 | AT3G19080 | 38.750 | 80 | 48 | 1 | 51 | 130 | 111 | 189 | 5.95e-12 | 62.0 |
Find 41 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCTCCTTCTTGTTATT+AGG | 0.207584 | 5.2:+16135329 | None:intergenic |
| CTGAAGCTGTTAAGAAAGTT+TGG | 0.251130 | 5.2:-16136450 | MS.gene82460:CDS |
| TTTATCTTTCCCATCGAAAA+TGG | 0.302387 | 5.2:+16135286 | None:intergenic |
| TTCAGGTTGATTTCACGAAA+TGG | 0.352206 | 5.2:+16135228 | None:intergenic |
| TATCAAGCTGCAGAATCTTC+AGG | 0.384496 | 5.2:-16136422 | MS.gene82460:intron |
| GCTTCAGTCCTCGAAACTTC+AGG | 0.406384 | 5.2:+16136466 | None:intergenic |
| TCTGAGCTCGGTAATTTCAT+TGG | 0.417141 | 5.2:-16136493 | MS.gene82460:CDS |
| GAAATGGGTAGCTAGCAATT+TGG | 0.423194 | 5.2:+16135244 | None:intergenic |
| AAGAAGGCGGCTGCATCCGC+CGG | 0.443418 | 5.2:-16136610 | MS.gene82460:CDS |
| TGAAGCTGTTAAGAAAGTTT+GGG | 0.446267 | 5.2:-16136449 | MS.gene82460:CDS |
| CAGAATGCTAATGGCGGCGG+CGG | 0.448004 | 5.2:-16136647 | MS.gene82460:CDS |
| ATTGGCCGGCAGAATGCTAA+TGG | 0.452798 | 5.2:-16136656 | MS.gene82460:CDS |
| GACGGTTGTGGATGCAGCTC+CGG | 0.455046 | 5.2:+16136591 | None:intergenic |
| AGGGATACAGAAGGTAGTTC+CGG | 0.456709 | 5.2:-16136521 | MS.gene82460:CDS |
| TCAGGTTGATTTCACGAAAT+GGG | 0.458186 | 5.2:+16135229 | None:intergenic |
| CTAATGGCGGCGGCGGCGAA+AGG | 0.468371 | 5.2:-16136640 | MS.gene82460:CDS |
| AGCTAGCAATTTGGCAATCT+CGG | 0.474611 | 5.2:+16135253 | None:intergenic |
| GGCGAAAGGAGCCACGAAGA+AGG | 0.475511 | 5.2:-16136626 | MS.gene82460:CDS |
| GAAAACCGCCGTGAAGAATA+CGG | 0.477775 | 5.2:-16136563 | MS.gene82460:CDS |
| TTGGTGCGCCTGAAGTTTCG+AGG | 0.478064 | 5.2:-16136474 | MS.gene82460:CDS |
| CGGCAGAATGCTAATGGCGG+CGG | 0.486305 | 5.2:-16136650 | MS.gene82460:CDS |
| GGATGCAGCCGCCTTCTTCG+TGG | 0.510322 | 5.2:+16136615 | None:intergenic |
| TCGCGATCATGGCACCAGCT+AGG | 0.520628 | 5.2:-16136690 | None:intergenic |
| GAAGAATACGGTTACGAGCA+AGG | 0.522588 | 5.2:-16136551 | MS.gene82460:CDS |
| GCAGAATCCTAATAACAAGA+AGG | 0.524697 | 5.2:-16135336 | MS.gene82460:intron |
| CGCCGCCATTAGCATTCTGC+CGG | 0.528951 | 5.2:+16136651 | None:intergenic |
| GCTCGTAACCGTATTCTTCA+CGG | 0.532307 | 5.2:+16136555 | None:intergenic |
| GTTCCGGTCACTTCTGAGCT+CGG | 0.533521 | 5.2:-16136505 | MS.gene82460:CDS |
| AATGCTCCGAAAACCCTAGC+TGG | 0.551067 | 5.2:+16136676 | None:intergenic |
| TTTCGATGGGAAAGATAAAG+TGG | 0.555020 | 5.2:-16135282 | MS.gene82460:CDS |
| AACTACCTTCTGTATCCCTC+CGG | 0.556811 | 5.2:+16136525 | None:intergenic |
| ACGGTTACGAGCAAGGGTAC+CGG | 0.569879 | 5.2:-16136544 | MS.gene82460:CDS |
| AAGAATACGGTTACGAGCAA+GGG | 0.583777 | 5.2:-16136550 | MS.gene82460:CDS |
| GAAAGGAGCCACGAAGAAGG+CGG | 0.599028 | 5.2:-16136623 | MS.gene82460:CDS |
| GGTTGTGGATGCAGCTCCGG+CGG | 0.606697 | 5.2:+16136594 | None:intergenic |
| TTACCGAGCTCAGAAGTGAC+CGG | 0.624475 | 5.2:+16136502 | None:intergenic |
| GGCCGGCAGAATGCTAATGG+CGG | 0.629027 | 5.2:-16136653 | MS.gene82460:CDS |
| GTTACGAGCAAGGGTACCGG+AGG | 0.678243 | 5.2:-16136541 | MS.gene82460:CDS |
| GGGTACCGGAGGGATACAGA+AGG | 0.705233 | 5.2:-16136530 | MS.gene82460:CDS |
| TTACGAGCAAGGGTACCGGA+GGG | 0.744071 | 5.2:-16136540 | MS.gene82460:CDS |
| CGTAACCGTATTCTTCACGG+CGG | 0.782134 | 5.2:+16136558 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATTTAAGAAAGAGAAAA+AGG | + | chr5.2:16136397-16136416 | None:intergenic | 20.0% |
| !!! | AAAACTTTGATTAGGTTTTA+TGG | - | chr5.2:16135610-16135629 | MS.gene82460:intron | 20.0% |
| !!! | GTCATTTTCTTAAATTTTAC+TGG | - | chr5.2:16135977-16135996 | MS.gene82460:intron | 20.0% |
| !!! | TTAAATTTTACTGGTTTTGT+CGG | - | chr5.2:16135986-16136005 | MS.gene82460:intron | 20.0% |
| ! | AAGCTAAGGATATCATTTAT+AGG | + | chr5.2:16136280-16136299 | None:intergenic | 25.0% |
| ! | ACAATTTGATTAGTAGTAGA+TGG | - | chr5.2:16136223-16136242 | MS.gene82460:intron | 25.0% |
| ! | CTGAATGAAAAACTTTGATT+AGG | - | chr5.2:16135602-16135621 | MS.gene82460:intron | 25.0% |
| ! | GATGTAATGATAGTTTGAAT+CGG | - | chr5.2:16136090-16136109 | MS.gene82460:intron | 25.0% |
| ! | GTAACTATTGTAATCATTGT+TGG | - | chr5.2:16136338-16136357 | MS.gene82460:intron | 25.0% |
| !!! | AAAATCTCCTTCTTGTTATT+AGG | + | chr5.2:16136585-16136604 | None:intergenic | 25.0% |
| !!! | TTATTTTGCGCTATTTGATT+TGG | - | chr5.2:16135635-16135654 | MS.gene82460:intron | 25.0% |
| GTATATTGCTTAACATCAGA+AGG | - | chr5.2:16136462-16136481 | MS.gene82460:CDS | 30.0% | |
| TCTGTTCAGTTAACAAATTG+TGG | - | chr5.2:16136420-16136439 | MS.gene82460:intron | 30.0% | |
| TGAAGCTGTTAAGAAAGTTT+GGG | - | chr5.2:16135462-16135481 | MS.gene82460:intron | 30.0% | |
| TGATTAGTAGTAGATGGTTA+TGG | - | chr5.2:16136229-16136248 | MS.gene82460:intron | 30.0% | |
| TTTATCTTTCCCATCGAAAA+TGG | + | chr5.2:16136628-16136647 | None:intergenic | 30.0% | |
| !! | ATTGTTTGTTGTAATCGCAA+TGG | - | chr5.2:16135660-16135679 | MS.gene82460:intron | 30.0% |
| AAACAAACATCTCGAAGCTA+AGG | + | chr5.2:16136294-16136313 | None:intergenic | 35.0% | |
| ACCAAAAAGAGACAAAAAGG+AGG | + | chr5.2:16136516-16136535 | None:intergenic | 35.0% | |
| ATAGATAATGACAAGCCTCA+TGG | + | chr5.2:16135737-16135756 | None:intergenic | 35.0% | |
| CACACCAAAAAGAGACAAAA+AGG | + | chr5.2:16136519-16136538 | None:intergenic | 35.0% | |
| CTGAAGCTGTTAAGAAAGTT+TGG | - | chr5.2:16135461-16135480 | MS.gene82460:intron | 35.0% | |
| GCAGAATCCTAATAACAAGA+AGG | - | chr5.2:16136575-16136594 | MS.gene82460:CDS | 35.0% | |
| TGGAAGCTTTCAAAGTTTCA+TGG | - | chr5.2:16136440-16136459 | MS.gene82460:CDS | 35.0% | |
| TTTCAAAAATCGCACGAAAC+AGG | + | chr5.2:16135771-16135790 | None:intergenic | 35.0% | |
| TTTCGATGGGAAAGATAAAG+TGG | - | chr5.2:16136629-16136648 | MS.gene82460:CDS | 35.0% | |
| ! | AAACTCAAGACCATTTTCGA+TGG | - | chr5.2:16136615-16136634 | MS.gene82460:CDS | 35.0% |
| ! | AACTCAAGACCATTTTCGAT+GGG | - | chr5.2:16136616-16136635 | MS.gene82460:CDS | 35.0% |
| ! | AATCGCAATGGTGTGTTTTA+GGG | - | chr5.2:16135672-16135691 | MS.gene82460:intron | 35.0% |
| ! | ATCAGAAGGATAGTTTGTCT+TGG | - | chr5.2:16136476-16136495 | MS.gene82460:CDS | 35.0% |
| ! | CTTCGAGATGTTTGTTTCTT+TGG | - | chr5.2:16136297-16136316 | MS.gene82460:intron | 35.0% |
| ! | TAATCGCAATGGTGTGTTTT+AGG | - | chr5.2:16135671-16135690 | MS.gene82460:intron | 35.0% |
| ! | TCCTCCTTTTTGTCTCTTTT+TGG | - | chr5.2:16136512-16136531 | MS.gene82460:CDS | 35.0% |
| ! | TGGTTATGGTTTTCTTAAGC+AGG | - | chr5.2:16136243-16136262 | MS.gene82460:intron | 35.0% |
| !! | AGTTGCTGTTGTCTGATTTT+TGG | - | chr5.2:16136133-16136152 | MS.gene82460:intron | 35.0% |
| !! | CTTTTTGTCTCTTTTTGGTG+TGG | - | chr5.2:16136517-16136536 | MS.gene82460:CDS | 35.0% |
| !! | TCAGGTTGATTTCACGAAAT+GGG | + | chr5.2:16136685-16136704 | None:intergenic | 35.0% |
| AAGAATACGGTTACGAGCAA+GGG | - | chr5.2:16135361-16135380 | MS.gene82460:intron | 40.0% | |
| AGCTAGCAATTTGGCAATCT+CGG | + | chr5.2:16136661-16136680 | None:intergenic | 40.0% | |
| CAACTCTAGCCATCAAATCA+AGG | + | chr5.2:16136118-16136137 | None:intergenic | 40.0% | |
| CACTTGACACTTCTGATTGA+AGG | - | chr5.2:16135893-16135912 | MS.gene82460:intron | 40.0% | |
| GAAATGGGTAGCTAGCAATT+TGG | + | chr5.2:16136670-16136689 | None:intergenic | 40.0% | |
| TAACAATCCCACCATCACAA+GGG | + | chr5.2:16136204-16136223 | None:intergenic | 40.0% | |
| TATCAAGCTGCAGAATCTTC+AGG | - | chr5.2:16135489-16135508 | MS.gene82460:intron | 40.0% | |
| TCTGAGCTCGGTAATTTCAT+TGG | - | chr5.2:16135418-16135437 | MS.gene82460:intron | 40.0% | |
| TGGTGTGGCTGTTTACAAAA+TGG | - | chr5.2:16136532-16136551 | MS.gene82460:CDS | 40.0% | |
| ! | ATATTGTTGTTGCGTCCATG+AGG | - | chr5.2:16135719-16135738 | MS.gene82460:intron | 40.0% |
| ! | ATTTAAAGCCCTTGTGATGG+TGG | - | chr5.2:16136193-16136212 | MS.gene82460:intron | 40.0% |
| ! | TTGGTTCATTTGTTAGCTGC+TGG | - | chr5.2:16136316-16136335 | MS.gene82460:intron | 40.0% |
| ! | TTTAAAGCCCTTGTGATGGT+GGG | - | chr5.2:16136194-16136213 | MS.gene82460:intron | 40.0% |
| !! | ACCATCACAAGGGCTTTAAA+TGG | + | chr5.2:16136194-16136213 | None:intergenic | 40.0% |
| !! | CCATCACAAGGGCTTTAAAT+GGG | + | chr5.2:16136193-16136212 | None:intergenic | 40.0% |
| !! | TGCTGTTGTCTGATTTTTGG+AGG | - | chr5.2:16136136-16136155 | MS.gene82460:intron | 40.0% |
| AACTACCTTCTGTATCCCTC+CGG | + | chr5.2:16135389-16135408 | None:intergenic | 45.0% | |
| AGGGATACAGAAGGTAGTTC+CGG | - | chr5.2:16135390-16135409 | MS.gene82460:intron | 45.0% | |
| GAAAACCGCCGTGAAGAATA+CGG | - | chr5.2:16135348-16135367 | MS.gene82460:intron | 45.0% | |
| GAAGAATACGGTTACGAGCA+AGG | - | chr5.2:16135360-16135379 | MS.gene82460:intron | 45.0% | |
| GCTCGTAACCGTATTCTTCA+CGG | + | chr5.2:16135359-16135378 | None:intergenic | 45.0% | |
| GTAACAATCCCACCATCACA+AGG | + | chr5.2:16136205-16136224 | None:intergenic | 45.0% | |
| TTTCATTGCGATGTTGCGTC+TGG | - | chr5.2:16135828-16135847 | MS.gene82460:intron | 45.0% | |
| ! | CAGGTTTGAGTTCTGTTGTC+TGG | - | chr5.2:16136162-16136181 | MS.gene82460:intron | 45.0% |
| ! | CCCATTTAAAGCCCTTGTGA+TGG | - | chr5.2:16136190-16136209 | MS.gene82460:intron | 45.0% |
| ! | CTTCTGATTGAAGGTGTGTC+CGG | - | chr5.2:16135902-16135921 | MS.gene82460:intron | 45.0% |
| ! | GAATCGGAGCCTTGATTTGA+TGG | - | chr5.2:16136106-16136125 | MS.gene82460:intron | 45.0% |
| !! | GTCTGATTTTTGGAGGTCAC+AGG | - | chr5.2:16136143-16136162 | MS.gene82460:intron | 45.0% |
| !!! | TGGTTTTGTCGGTGCTTCAT+AGG | - | chr5.2:16135997-16136016 | MS.gene82460:intron | 45.0% |
| AATGCTCCGAAAACCCTAGC+TGG | + | chr5.2:16135238-16135257 | None:intergenic | 50.0% | |
| ATTGGCCGGCAGAATGCTAA+TGG | - | chr5.2:16135255-16135274 | MS.gene82460:CDS | 50.0% | |
| CGTAACCGTATTCTTCACGG+CGG | + | chr5.2:16135356-16135375 | None:intergenic | 50.0% | |
| GCTTCAGTCCTCGAAACTTC+AGG | + | chr5.2:16135448-16135467 | None:intergenic | 50.0% | |
| TTACCGAGCTCAGAAGTGAC+CGG | + | chr5.2:16135412-16135431 | None:intergenic | 50.0% | |
| ! | AGCTAGGGTTTTCGGAGCAT+TGG | - | chr5.2:16135237-16135256 | MS.gene82460:CDS | 50.0% |
| ! | ATGGCACCAGCTAGGGTTTT+CGG | - | chr5.2:16135229-16135248 | MS.gene82460:CDS | 50.0% |
| ! | GGTTTTCTTCACGACGGTTG+TGG | + | chr5.2:16135335-16135354 | None:intergenic | 50.0% |
| ! | TTGAAGGTGTGTCCGGCTTT+CGG | - | chr5.2:16135909-16135928 | MS.gene82460:intron | 50.0% |
| GAAAGGAGCCACGAAGAAGG+CGG | - | chr5.2:16135288-16135307 | MS.gene82460:CDS | 55.0% | |
| GTCAGACACATGCCGAAAGC+CGG | + | chr5.2:16135924-16135943 | None:intergenic | 55.0% | |
| GTTCCGGTCACTTCTGAGCT+CGG | - | chr5.2:16135406-16135425 | MS.gene82460:intron | 55.0% | |
| TTGGTGCGCCTGAAGTTTCG+AGG | - | chr5.2:16135437-16135456 | MS.gene82460:intron | 55.0% | |
| ! | ACGGTTACGAGCAAGGGTAC+CGG | - | chr5.2:16135367-16135386 | MS.gene82460:intron | 55.0% |
| ! | CACGGCGGTTTTCTTCACGA+CGG | + | chr5.2:16135341-16135360 | None:intergenic | 55.0% |
| !! | TTACGAGCAAGGGTACCGGA+GGG | - | chr5.2:16135371-16135390 | MS.gene82460:intron | 55.0% |
| !!! | AGGGTTTTCGGAGCATTGGC+CGG | - | chr5.2:16135241-16135260 | MS.gene82460:CDS | 55.0% |
| CAGAATGCTAATGGCGGCGG+CGG | - | chr5.2:16135264-16135283 | MS.gene82460:CDS | 60.0% | |
| CGCCGCCATTAGCATTCTGC+CGG | + | chr5.2:16135263-16135282 | None:intergenic | 60.0% | |
| CGGCAGAATGCTAATGGCGG+CGG | - | chr5.2:16135261-16135280 | MS.gene82460:CDS | 60.0% | |
| GACGGTTGTGGATGCAGCTC+CGG | + | chr5.2:16135323-16135342 | None:intergenic | 60.0% | |
| GGCCGGCAGAATGCTAATGG+CGG | - | chr5.2:16135258-16135277 | MS.gene82460:CDS | 60.0% | |
| GGCGAAAGGAGCCACGAAGA+AGG | - | chr5.2:16135285-16135304 | MS.gene82460:CDS | 60.0% | |
| !! | GGGTACCGGAGGGATACAGA+AGG | - | chr5.2:16135381-16135400 | MS.gene82460:intron | 60.0% |
| !! | GTTACGAGCAAGGGTACCGG+AGG | - | chr5.2:16135370-16135389 | MS.gene82460:intron | 60.0% |
| AAGAAGGCGGCTGCATCCGC+CGG | - | chr5.2:16135301-16135320 | MS.gene82460:CDS | 65.0% | |
| GGATGCAGCCGCCTTCTTCG+TGG | + | chr5.2:16135299-16135318 | None:intergenic | 65.0% | |
| GGTTGTGGATGCAGCTCCGG+CGG | + | chr5.2:16135320-16135339 | None:intergenic | 65.0% | |
| CTAATGGCGGCGGCGGCGAA+AGG | - | chr5.2:16135271-16135290 | MS.gene82460:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 16135229 | 16136704 | 16135229 | ID=MS.gene82460 |
| chr5.2 | mRNA | 16135229 | 16136704 | 16135229 | ID=MS.gene82460.t1;Parent=MS.gene82460 |
| chr5.2 | exon | 16136423 | 16136704 | 16136423 | ID=MS.gene82460.t1.exon1;Parent=MS.gene82460.t1 |
| chr5.2 | CDS | 16136423 | 16136704 | 16136423 | ID=cds.MS.gene82460.t1;Parent=MS.gene82460.t1 |
| chr5.2 | exon | 16135229 | 16135354 | 16135229 | ID=MS.gene82460.t1.exon2;Parent=MS.gene82460.t1 |
| chr5.2 | CDS | 16135229 | 16135354 | 16135229 | ID=cds.MS.gene82460.t1;Parent=MS.gene82460.t1 |
| Gene Sequence |
| Protein sequence |