Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82911.t1 | XP_003618273.1 | 97.3 | 185 | 5 | 0 | 1 | 185 | 1 | 185 | 9.50E-78 | 299.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82911.t1 | P51949 | 45.1 | 91 | 47 | 1 | 11 | 98 | 70 | 160 | 1.7e-14 | 80.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82911.t1 | G7KI90 | 97.3 | 185 | 5 | 0 | 1 | 185 | 1 | 185 | 6.9e-78 | 299.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053396 | MS.gene82911 | 0.810213 | 1.29E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82911.t1 | MTR_6g006900 | 97.297 | 185 | 5 | 0 | 1 | 185 | 1 | 185 | 8.68e-133 | 369 |
| MS.gene82911.t1 | MTR_6g006900 | 97.143 | 140 | 4 | 0 | 46 | 185 | 1 | 140 | 1.37e-96 | 276 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82911.t1 | AT4G30820 | 55.319 | 188 | 70 | 4 | 1 | 184 | 1 | 178 | 3.44e-60 | 186 |
| MS.gene82911.t1 | AT4G30820 | 55.319 | 188 | 70 | 4 | 1 | 184 | 1 | 178 | 3.44e-60 | 186 |
| MS.gene82911.t1 | AT4G30820 | 55.319 | 188 | 70 | 4 | 1 | 184 | 1 | 178 | 3.44e-60 | 186 |
| MS.gene82911.t1 | AT4G30820 | 55.319 | 188 | 70 | 4 | 1 | 184 | 1 | 178 | 3.44e-60 | 186 |
| MS.gene82911.t1 | AT4G30820 | 55.319 | 188 | 70 | 4 | 1 | 184 | 1 | 178 | 3.44e-60 | 186 |
| MS.gene82911.t1 | AT4G30820 | 55.319 | 188 | 70 | 4 | 1 | 184 | 1 | 178 | 3.44e-60 | 186 |
| MS.gene82911.t1 | AT4G30820 | 55.319 | 188 | 70 | 4 | 1 | 184 | 1 | 178 | 3.44e-60 | 186 |
| MS.gene82911.t1 | AT4G30820 | 54.913 | 173 | 65 | 3 | 15 | 184 | 1 | 163 | 1.58e-53 | 168 |
| MS.gene82911.t1 | AT4G30820 | 54.913 | 173 | 65 | 3 | 15 | 184 | 1 | 163 | 1.58e-53 | 168 |
| MS.gene82911.t1 | AT4G30820 | 54.913 | 173 | 65 | 3 | 15 | 184 | 1 | 163 | 1.58e-53 | 168 |
| MS.gene82911.t1 | AT4G30820 | 54.913 | 173 | 65 | 3 | 15 | 184 | 1 | 163 | 1.58e-53 | 168 |
| MS.gene82911.t1 | AT4G30820 | 54.913 | 173 | 65 | 3 | 15 | 184 | 1 | 163 | 1.58e-53 | 168 |
| MS.gene82911.t1 | AT4G30820 | 54.913 | 173 | 65 | 3 | 15 | 184 | 1 | 163 | 1.58e-53 | 168 |
| MS.gene82911.t1 | AT4G30820 | 54.225 | 142 | 52 | 3 | 46 | 184 | 1 | 132 | 3.11e-38 | 128 |
| MS.gene82911.t1 | AT4G30820 | 54.225 | 142 | 52 | 3 | 46 | 184 | 1 | 132 | 3.11e-38 | 128 |
| MS.gene82911.t1 | AT4G30820 | 54.225 | 142 | 52 | 3 | 46 | 184 | 1 | 132 | 3.11e-38 | 128 |
| MS.gene82911.t1 | AT4G30820 | 54.225 | 142 | 52 | 3 | 46 | 184 | 1 | 132 | 3.11e-38 | 128 |
| MS.gene82911.t1 | AT4G30820 | 54.225 | 142 | 52 | 3 | 46 | 184 | 1 | 132 | 3.11e-38 | 128 |
| MS.gene82911.t1 | AT4G30820 | 54.225 | 142 | 52 | 3 | 46 | 184 | 1 | 132 | 3.11e-38 | 128 |
| MS.gene82911.t1 | AT4G30820 | 54.225 | 142 | 52 | 3 | 46 | 184 | 1 | 132 | 3.11e-38 | 128 |
| MS.gene82911.t1 | AT4G30820 | 54.225 | 142 | 52 | 3 | 46 | 184 | 1 | 132 | 3.11e-38 | 128 |
| MS.gene82911.t1 | AT4G30820 | 54.286 | 140 | 51 | 3 | 48 | 184 | 61 | 190 | 9.25e-37 | 126 |
| MS.gene82911.t1 | AT4G30820 | 54.286 | 140 | 51 | 3 | 48 | 184 | 61 | 190 | 9.25e-37 | 126 |
| MS.gene82911.t1 | AT4G30820 | 53.901 | 141 | 52 | 3 | 47 | 184 | 37 | 167 | 1.03e-36 | 125 |
| MS.gene82911.t1 | AT4G30820 | 53.901 | 141 | 52 | 3 | 47 | 184 | 37 | 167 | 1.03e-36 | 125 |
| MS.gene82911.t1 | AT4G30820 | 53.901 | 141 | 52 | 3 | 47 | 184 | 37 | 167 | 1.03e-36 | 125 |
| MS.gene82911.t1 | AT4G30820 | 53.901 | 141 | 52 | 3 | 47 | 184 | 37 | 167 | 1.03e-36 | 125 |
Find 54 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACCCTGCTTGAGAATTT+TGG | 0.132969 | 6.1:-2363494 | None:intergenic |
| TACTTACATCATTATCAGTT+TGG | 0.282300 | 6.1:-2363228 | None:intergenic |
| AGGGTTTGGTGCTGTTCCTC+AGG | 0.306370 | 6.1:+2363509 | MS.gene82911:CDS |
| AAGAAGCTTTCGGAAGCATT+TGG | 0.336578 | 6.1:+2363706 | MS.gene82911:CDS |
| GGTCCCATGCCTGTGGGTCT+AGG | 0.375927 | 6.1:-2363564 | None:intergenic |
| CAATATGCTCCTACAATTGC+AGG | 0.379643 | 6.1:+2363534 | MS.gene82911:CDS |
| CAAAATTCTCAAGCAGGGTT+TGG | 0.385003 | 6.1:+2363495 | MS.gene82911:CDS |
| TAGTACCAATCCTCACTATA+AGG | 0.388046 | 6.1:+2360741 | MS.gene82911:CDS |
| GCAGCGTTTAACTTGATTGA+AGG | 0.407353 | 6.1:+2361942 | MS.gene82911:intron |
| ACTTACATCATTATCAGTTT+GGG | 0.411850 | 6.1:-2363227 | None:intergenic |
| GGGTTTGGTGCTGTTCCTCA+GGG | 0.428833 | 6.1:+2363510 | MS.gene82911:CDS |
| GGCTGTCCTCCTGCAATTGT+AGG | 0.443660 | 6.1:-2363543 | None:intergenic |
| AGGGCACTTGAAGAAGCTTT+CGG | 0.445473 | 6.1:+2363696 | MS.gene82911:CDS |
| GATGGAGTATAGAAATAAGC+AGG | 0.445588 | 6.1:+2363670 | MS.gene82911:CDS |
| GCTGCTATGGCAACAAGCAA+GGG | 0.450505 | 6.1:+2363196 | MS.gene82911:CDS |
| TGCTGCTATGGCAACAAGCA+AGG | 0.466577 | 6.1:+2363195 | MS.gene82911:CDS |
| GAGAGAGTACAATGATTACT+TGG | 0.492456 | 6.1:+2361817 | MS.gene82911:CDS |
| GGACCACAACCTTTACCGCT+TGG | 0.505280 | 6.1:+2363582 | MS.gene82911:CDS |
| TCACCTCCTCCAAGCGGTAA+AGG | 0.505789 | 6.1:-2363591 | None:intergenic |
| CCACAACCTTTACCGCTTGG+AGG | 0.509198 | 6.1:+2363585 | MS.gene82911:CDS |
| TTGAGGCGACAAGCAAGGGC+TGG | 0.510721 | 6.1:+2363645 | MS.gene82911:CDS |
| AACATTGAGGCGACAAGCAA+GGG | 0.512789 | 6.1:+2363641 | MS.gene82911:CDS |
| GCAAACCAAAATTCTCAAGC+AGG | 0.513536 | 6.1:+2363489 | MS.gene82911:CDS |
| TCATTGTACTCTCTCAAAGA+TGG | 0.515853 | 6.1:-2361809 | None:intergenic |
| CCTCCAAGCGGTAAAGGTTG+TGG | 0.526699 | 6.1:-2363585 | None:intergenic |
| TGAGGAATTAGCTGCTGCTA+TGG | 0.529660 | 6.1:+2363183 | MS.gene82911:CDS |
| CAGCCTAGACCCACAGGCAT+GGG | 0.530825 | 6.1:+2363561 | MS.gene82911:CDS |
| GACAAGCAAGGGCTGGAGGA+TGG | 0.536744 | 6.1:+2363652 | MS.gene82911:CDS |
| CTGCTATGGCAACAAGCAAG+GGG | 0.537532 | 6.1:+2363197 | MS.gene82911:CDS |
| ATGTAGCTGCTATTGAAGCT+AGG | 0.551828 | 6.1:+2361970 | MS.gene82911:CDS |
| GTATAGAAATAAGCAGGAAG+AGG | 0.553489 | 6.1:+2363676 | MS.gene82911:CDS |
| GGAGGACAGCCTAGACCCAC+AGG | 0.555322 | 6.1:+2363555 | MS.gene82911:CDS |
| TATCTCCTTATAGTGAGGAT+TGG | 0.564981 | 6.1:-2360746 | None:intergenic |
| ACTATAAGGAGATAGCCATC+AGG | 0.569975 | 6.1:+2360755 | MS.gene82911:CDS |
| AGGTTGTGGTCCCATGCCTG+TGG | 0.571476 | 6.1:-2363571 | None:intergenic |
| CAACCTTTACCGCTTGGAGG+AGG | 0.575196 | 6.1:+2363588 | MS.gene82911:CDS |
| AATGATTAATCGAGCCCGAA+AGG | 0.575774 | 6.1:+2362028 | MS.gene82911:CDS |
| AGCTAGGATTGCTAAATACC+AGG | 0.579511 | 6.1:+2361986 | MS.gene82911:CDS |
| ACAGCCTAGACCCACAGGCA+TGG | 0.580410 | 6.1:+2363560 | MS.gene82911:CDS |
| AAACATTGAGGCGACAAGCA+AGG | 0.580983 | 6.1:+2363640 | MS.gene82911:CDS |
| TATAGAAATAAGCAGGAAGA+GGG | 0.588395 | 6.1:+2363677 | MS.gene82911:CDS |
| CAAACCAAAATTCTCAAGCA+GGG | 0.600009 | 6.1:+2363490 | MS.gene82911:CDS |
| GGTTGTGGTCCCATGCCTGT+GGG | 0.603087 | 6.1:-2363570 | None:intergenic |
| ACATCATTATCAGTTTGGGA+AGG | 0.612953 | 6.1:-2363223 | None:intergenic |
| AGGCGACAAGCAAGGGCTGG+AGG | 0.622144 | 6.1:+2363648 | MS.gene82911:CDS |
| GGTTTGGTGCTGTTCCTCAG+GGG | 0.623768 | 6.1:+2363511 | MS.gene82911:CDS |
| GCTAGCGATTCTCTTCCTGA+TGG | 0.639098 | 6.1:-2360770 | None:intergenic |
| AGAGTACAATGATTACTTGG+AGG | 0.646752 | 6.1:+2361820 | MS.gene82911:CDS |
| ATGGCTATCTCCTTATAGTG+AGG | 0.649170 | 6.1:-2360751 | None:intergenic |
| CTCGTGTCACCTCCTCCAAG+CGG | 0.662296 | 6.1:-2363597 | None:intergenic |
| TTGAGAACGAGGAAACATTG+AGG | 0.681959 | 6.1:+2363628 | MS.gene82911:CDS |
| GTAGGAGCATATTGCCCCTG+AGG | 0.698740 | 6.1:-2363525 | None:intergenic |
| TATGCTCCTACAATTGCAGG+AGG | 0.701246 | 6.1:+2363537 | MS.gene82911:CDS |
| GAGCTACGTAGTTGAGAACG+AGG | 0.722637 | 6.1:+2363617 | MS.gene82911:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATGGAAAAAATTATATT+TGG | - | chr6.1:2362927-2362946 | None:intergenic | 10.0% |
| !! | GTATTTAAGTATATTATTTA+AGG | + | chr6.1:2362788-2362807 | MS.gene82911:intron | 10.0% |
| !!! | ACAATATAATTTTTAGTTTT+AGG | + | chr6.1:2362964-2362983 | MS.gene82911:intron | 10.0% |
| !!! | ATATAACATATTAAGAATTT+TGG | + | chr6.1:2361608-2361627 | MS.gene82911:intron | 10.0% |
| !!! | CAATATAATTTTTAGTTTTA+GGG | + | chr6.1:2362965-2362984 | MS.gene82911:intron | 10.0% |
| !! | AATAACACATCAAAATATAT+AGG | - | chr6.1:2363140-2363159 | None:intergenic | 15.0% |
| !! | CATAAATTTGTCTTATAAAT+AGG | - | chr6.1:2363431-2363450 | None:intergenic | 15.0% |
| !!! | AATATTGTTTTTTAGCATTA+TGG | + | chr6.1:2362766-2362785 | MS.gene82911:intron | 15.0% |
| !!! | ATATTCTAGAATGTATATTT+AGG | + | chr6.1:2361045-2361064 | MS.gene82911:intron | 15.0% |
| !!! | TAATTTTTTCCATAATTTCT+TGG | + | chr6.1:2362931-2362950 | MS.gene82911:intron | 15.0% |
| !!! | TATTCTAGAATGTATATTTA+GGG | + | chr6.1:2361046-2361065 | MS.gene82911:intron | 15.0% |
| !! | AAACGACAAATAATAGTAAT+TGG | - | chr6.1:2362487-2362506 | None:intergenic | 20.0% |
| !! | AACGACAAATAATAGTAATT+GGG | - | chr6.1:2362486-2362505 | None:intergenic | 20.0% |
| !! | AATTTGTCTTATAAATAGGT+TGG | - | chr6.1:2363427-2363446 | None:intergenic | 20.0% |
| !! | ACATTTCAATCTCAAATTAT+TGG | - | chr6.1:2363329-2363348 | None:intergenic | 20.0% |
| !! | ATTATTTGTAGAAAAGAAGT+AGG | + | chr6.1:2361665-2361684 | MS.gene82911:intron | 20.0% |
| !! | ATTTGTCTTATAAATAGGTT+GGG | - | chr6.1:2363426-2363445 | None:intergenic | 20.0% |
| !! | CAAACAAAAAAACACTTAAT+TGG | - | chr6.1:2363385-2363404 | None:intergenic | 20.0% |
| !! | TGAATGAATTGAATATAACA+TGG | - | chr6.1:2361727-2361746 | None:intergenic | 20.0% |
| !! | TTATGCATTCAAGAAATTTA+GGG | - | chr6.1:2361245-2361264 | None:intergenic | 20.0% |
| !! | TTTACTAAACCTATACTAAT+AGG | - | chr6.1:2361089-2361108 | None:intergenic | 20.0% |
| !! | TTTGCTTGTAATAAATAAAC+AGG | + | chr6.1:2363159-2363178 | MS.gene82911:intron | 20.0% |
| !!! | AAAAAAAAGTACATTGCTTA+AGG | + | chr6.1:2362737-2362756 | MS.gene82911:intron | 20.0% |
| !!! | ATACTATTTTAAGTACCTTT+CGG | - | chr6.1:2362046-2362065 | None:intergenic | 20.0% |
| !!! | ATTCATTACGATTACATTTT+TGG | + | chr6.1:2363274-2363293 | MS.gene82911:intron | 20.0% |
| !!! | TATTTGAAATTTCTGAGAAT+CGG | - | chr6.1:2361368-2361387 | None:intergenic | 20.0% |
| ! | AATAAAGGACCAAGAAATTA+TGG | - | chr6.1:2362943-2362962 | None:intergenic | 25.0% |
| ! | ACTTACATCATTATCAGTTT+GGG | - | chr6.1:2363230-2363249 | None:intergenic | 25.0% |
| ! | GGCATTAACTAATAGTAATT+GGG | - | chr6.1:2362442-2362461 | None:intergenic | 25.0% |
| ! | GGTGTAATCATAAAACATAT+AGG | + | chr6.1:2361450-2361469 | MS.gene82911:intron | 25.0% |
| ! | GTACTTAAAATAGTATGCAA+TGG | + | chr6.1:2362050-2362069 | MS.gene82911:intron | 25.0% |
| ! | GTTATGCATTCAAGAAATTT+AGG | - | chr6.1:2361246-2361265 | None:intergenic | 25.0% |
| ! | TACTTACATCATTATCAGTT+TGG | - | chr6.1:2363231-2363250 | None:intergenic | 25.0% |
| ! | TAGCAATTGGAATAAAGAAA+AGG | - | chr6.1:2361543-2361562 | None:intergenic | 25.0% |
| ! | TTGCATAACAAATTGATACA+GGG | - | chr6.1:2363104-2363123 | None:intergenic | 25.0% |
| !! | ACTGATAATGATGTAAGTAT+TGG | + | chr6.1:2363232-2363251 | MS.gene82911:intron | 25.0% |
| !! | CATAACTTGTAAGCTAATTT+AGG | - | chr6.1:2361170-2361189 | None:intergenic | 25.0% |
| !! | TAGCTATTTCCTATTAGTAT+AGG | + | chr6.1:2361077-2361096 | MS.gene82911:intron | 25.0% |
| !! | TTTTCTTTCTGTAGTTAGTA+TGG | + | chr6.1:2361300-2361319 | MS.gene82911:intron | 25.0% |
| !!! | TACATTCTAGAATATACACA+TGG | - | chr6.1:2361040-2361059 | None:intergenic | 25.0% |
| !!! | TACTATTTTAAGTACCTTTC+GGG | - | chr6.1:2362045-2362064 | None:intergenic | 25.0% |
| ATAATAGTAATTGGGAGTAG+AGG | - | chr6.1:2362478-2362497 | None:intergenic | 30.0% | |
| ATTATTGGCCAAGCTTAATT+AGG | - | chr6.1:2363314-2363333 | None:intergenic | 30.0% | |
| CTAATAAAATCCTGCAGAAT+TGG | + | chr6.1:2360929-2360948 | MS.gene82911:intron | 30.0% | |
| CTTGCATAACAAATTGATAC+AGG | - | chr6.1:2363105-2363124 | None:intergenic | 30.0% | |
| GGGCATTAACTAATAGTAAT+TGG | - | chr6.1:2362443-2362462 | None:intergenic | 30.0% | |
| TAAATGTGAGTGATAAGACT+AGG | - | chr6.1:2361570-2361589 | None:intergenic | 30.0% | |
| TAATAGTAATTGGGAGTAGA+GGG | - | chr6.1:2362477-2362496 | None:intergenic | 30.0% | |
| TAATAGTAATTGGGAGTAGT+GGG | - | chr6.1:2362433-2362452 | None:intergenic | 30.0% | |
| TATAGAAATAAGCAGGAAGA+GGG | + | chr6.1:2363677-2363696 | MS.gene82911:CDS | 30.0% | |
| TCTAAATTCTACTCGTAGTA+TGG | + | chr6.1:2360879-2360898 | MS.gene82911:intron | 30.0% | |
| TGTAATAAATAAACAGGCTG+AGG | + | chr6.1:2363165-2363184 | MS.gene82911:intron | 30.0% | |
| ! | AATTGTCGATTAATTGCTGA+AGG | + | chr6.1:2361428-2361447 | MS.gene82911:intron | 30.0% |
| ! | ATTGTCGATTAATTGCTGAA+GGG | + | chr6.1:2361429-2361448 | MS.gene82911:intron | 30.0% |
| ! | TTTGTTCAGAATTTTCTTCC+TGG | - | chr6.1:2362007-2362026 | None:intergenic | 30.0% |
| ACATCATTATCAGTTTGGGA+AGG | - | chr6.1:2363226-2363245 | None:intergenic | 35.0% | |
| ACTTTGTTCATTCTCGAAAC+AGG | + | chr6.1:2363464-2363483 | MS.gene82911:intron | 35.0% | |
| AGAGTACAATGATTACTTGG+AGG | + | chr6.1:2361820-2361839 | MS.gene82911:CDS | 35.0% | |
| CAAACCAAAATTCTCAAGCA+GGG | + | chr6.1:2363490-2363509 | MS.gene82911:CDS | 35.0% | |
| CTAATAGTAATTGGGAGTAG+TGG | - | chr6.1:2362434-2362453 | None:intergenic | 35.0% | |
| GAAATCGTAAGATCCGTATA+TGG | + | chr6.1:2362279-2362298 | MS.gene82911:intron | 35.0% | |
| GATGGAGTATAGAAATAAGC+AGG | + | chr6.1:2363670-2363689 | MS.gene82911:CDS | 35.0% | |
| GGTAAGTGATGCTTATCATA+TGG | + | chr6.1:2361321-2361340 | MS.gene82911:intron | 35.0% | |
| GTAAGATCCGTATATGGTAA+CGG | + | chr6.1:2362285-2362304 | MS.gene82911:intron | 35.0% | |
| GTATAGAAATAAGCAGGAAG+AGG | + | chr6.1:2363676-2363695 | MS.gene82911:CDS | 35.0% | |
| TAAGATCCGTATATGGTAAC+GGG | + | chr6.1:2362286-2362305 | MS.gene82911:intron | 35.0% | |
| TAGTACCAATCCTCACTATA+AGG | + | chr6.1:2360741-2360760 | MS.gene82911:CDS | 35.0% | |
| TATCTCCTTATAGTGAGGAT+TGG | - | chr6.1:2360749-2360768 | None:intergenic | 35.0% | |
| TCATTGTACTCTCTCAAAGA+TGG | - | chr6.1:2361812-2361831 | None:intergenic | 35.0% | |
| ! | GAGAGAGTACAATGATTACT+TGG | + | chr6.1:2361817-2361836 | MS.gene82911:CDS | 35.0% |
| ! | GAGGGGTTTGATTTCAAAAT+AGG | + | chr6.1:2361130-2361149 | MS.gene82911:intron | 35.0% |
| !! | TACTCAGGTTAGTTTAGTGA+AGG | + | chr6.1:2361486-2361505 | MS.gene82911:intron | 35.0% |
| AAATCAAACCCCTCTGATTC+TGG | - | chr6.1:2361124-2361143 | None:intergenic | 40.0% | |
| AACACGTTTAGTCACGTGAA+TGG | + | chr6.1:2362375-2362394 | MS.gene82911:intron | 40.0% | |
| AACTCCAACAACAATTCTGC+TGG | + | chr6.1:2361263-2361282 | MS.gene82911:intron | 40.0% | |
| AAGACTAGGCAGTTAGCAAT+TGG | - | chr6.1:2361556-2361575 | None:intergenic | 40.0% | |
| AATCAAACCCCTCTGATTCT+GGG | - | chr6.1:2361123-2361142 | None:intergenic | 40.0% | |
| AATCAAGTTAAACGCTGCAG+GGG | - | chr6.1:2361940-2361959 | None:intergenic | 40.0% | |
| AATGATTAATCGAGCCCGAA+AGG | + | chr6.1:2362028-2362047 | MS.gene82911:CDS | 40.0% | |
| ACTATAAGGAGATAGCCATC+AGG | + | chr6.1:2360755-2360774 | MS.gene82911:CDS | 40.0% | |
| ACTCCAACAACAATTCTGCT+GGG | + | chr6.1:2361264-2361283 | MS.gene82911:intron | 40.0% | |
| AGCAAATATCCCAGAATCAG+AGG | + | chr6.1:2361111-2361130 | MS.gene82911:intron | 40.0% | |
| AGCTAGGATTGCTAAATACC+AGG | + | chr6.1:2361986-2362005 | MS.gene82911:CDS | 40.0% | |
| ATCTATCAAGCCAATTCTGC+AGG | - | chr6.1:2360942-2360961 | None:intergenic | 40.0% | |
| ATGGCTATCTCCTTATAGTG+AGG | - | chr6.1:2360754-2360773 | None:intergenic | 40.0% | |
| ATGTAGCTGCTATTGAAGCT+AGG | + | chr6.1:2361970-2361989 | MS.gene82911:CDS | 40.0% | |
| CAAAATTCTCAAGCAGGGTT+TGG | + | chr6.1:2363495-2363514 | MS.gene82911:CDS | 40.0% | |
| CAAATATCCCAGAATCAGAG+GGG | + | chr6.1:2361113-2361132 | MS.gene82911:intron | 40.0% | |
| CAATATGCTCCTACAATTGC+AGG | + | chr6.1:2363534-2363553 | MS.gene82911:CDS | 40.0% | |
| CAATCAAGTTAAACGCTGCA+GGG | - | chr6.1:2361941-2361960 | None:intergenic | 40.0% | |
| GCAAACCAAAATTCTCAAGC+AGG | + | chr6.1:2363489-2363508 | MS.gene82911:CDS | 40.0% | |
| GCAAATATCCCAGAATCAGA+GGG | + | chr6.1:2361112-2361131 | MS.gene82911:intron | 40.0% | |
| GCATCATCGTTGTAACATAG+TGG | - | chr6.1:2362325-2362344 | None:intergenic | 40.0% | |
| TAACCTGAGTACTATGCATG+TGG | - | chr6.1:2361477-2361496 | None:intergenic | 40.0% | |
| TCAATCAAGTTAAACGCTGC+AGG | - | chr6.1:2361942-2361961 | None:intergenic | 40.0% | |
| TCGGGTTCTGTGTAAAATAC+TGG | + | chr6.1:2362251-2362270 | MS.gene82911:intron | 40.0% | |
| TCGTTGAGCCTAATTAAGCT+TGG | + | chr6.1:2363303-2363322 | MS.gene82911:intron | 40.0% | |
| TCTGTGTAAAATACTGGTGC+TGG | + | chr6.1:2362257-2362276 | MS.gene82911:intron | 40.0% | |
| TCTTCCTCTGTTGTCAATAG+CGG | + | chr6.1:2362080-2362099 | MS.gene82911:intron | 40.0% | |
| TTGAGAACGAGGAAACATTG+AGG | + | chr6.1:2363628-2363647 | MS.gene82911:CDS | 40.0% | |
| ! | CAAACCCTGCTTGAGAATTT+TGG | - | chr6.1:2363497-2363516 | None:intergenic | 40.0% |
| ! | TAAACTCAGACTCTCGCTTT+TGG | + | chr6.1:2361698-2361717 | MS.gene82911:intron | 40.0% |
| !! | AAACTCAGACTCTCGCTTTT+GGG | + | chr6.1:2361699-2361718 | MS.gene82911:intron | 40.0% |
| !! | AAGAAGCTTTCGGAAGCATT+TGG | + | chr6.1:2363706-2363725 | MS.gene82911:CDS | 40.0% |
| !! | CGTTGTAACATAGTGGATCT+TGG | - | chr6.1:2362318-2362337 | None:intergenic | 40.0% |
| !! | GCAGCGTTTAACTTGATTGA+AGG | + | chr6.1:2361942-2361961 | MS.gene82911:intron | 40.0% |
| !! | TCAGGTTAGTTTAGTGAAGG+AGG | + | chr6.1:2361489-2361508 | MS.gene82911:intron | 40.0% |
| AAACATTGAGGCGACAAGCA+AGG | + | chr6.1:2363640-2363659 | MS.gene82911:CDS | 45.0% | |
| AACATTGAGGCGACAAGCAA+GGG | + | chr6.1:2363641-2363660 | MS.gene82911:CDS | 45.0% | |
| AGAGACCATGGTTGTCAAAG+CGG | - | chr6.1:2363073-2363092 | None:intergenic | 45.0% | |
| AGGGAAAAGCGGATCAAAAG+CGG | + | chr6.1:2362178-2362197 | MS.gene82911:intron | 45.0% | |
| ATCCGACCCGTTACCATATA+CGG | - | chr6.1:2362295-2362314 | None:intergenic | 45.0% | |
| CTACCCAGCAGAATTGTTGT+TGG | - | chr6.1:2361270-2361289 | None:intergenic | 45.0% | |
| TATGCTCCTACAATTGCAGG+AGG | + | chr6.1:2363537-2363556 | MS.gene82911:CDS | 45.0% | |
| TGAAGGAGGAGCTGTGAAAT+TGG | + | chr6.1:2361503-2361522 | MS.gene82911:intron | 45.0% | |
| TGAGGAATTAGCTGCTGCTA+TGG | + | chr6.1:2363183-2363202 | MS.gene82911:CDS | 45.0% | |
| ! | AGGGCACTTGAAGAAGCTTT+CGG | + | chr6.1:2363696-2363715 | MS.gene82911:CDS | 45.0% |
| !! | AACTCAGACTCTCGCTTTTG+GGG | + | chr6.1:2361700-2361719 | MS.gene82911:intron | 45.0% |
| !! | ATCCGTATATGGTAACGGGT+CGG | + | chr6.1:2362290-2362309 | MS.gene82911:intron | 45.0% |
| !! | TTGGAAGCATCTCTCAGAAG+AGG | - | chr6.1:2363366-2363385 | None:intergenic | 45.0% |
| !! | AAAAATTATATTGTTAATAA+AGG | - | chr6.1:2362958-2362977 | None:intergenic | 5.0% |
| !! | AAATAAAGTAAAAATTATAA+AGG | - | chr6.1:2361897-2361916 | None:intergenic | 5.0% |
| !! | AATAAAGTAAAAATTATAAA+GGG | - | chr6.1:2361896-2361915 | None:intergenic | 5.0% |
| !! | ATAATAATCATAATAATAAT+AGG | + | chr6.1:2362605-2362624 | MS.gene82911:intron | 5.0% |
| !! | ATAATTATTGAAAATAAAAA+AGG | - | chr6.1:2362545-2362564 | None:intergenic | 5.0% |
| !! | TAATAATCATAATAATAATA+GGG | + | chr6.1:2362606-2362625 | MS.gene82911:intron | 5.0% |
| AGGGCAGATAGAAGAGACCA+TGG | - | chr6.1:2363085-2363104 | None:intergenic | 50.0% | |
| AGTAGAGGGTTACAGCTGTG+GGG | - | chr6.1:2362463-2362482 | None:intergenic | 50.0% | |
| AGTTAAACGCTGCAGGGGAA+AGG | - | chr6.1:2361935-2361954 | None:intergenic | 50.0% | |
| CGTTTAGTCACGTGAATGGC+TGG | + | chr6.1:2362379-2362398 | MS.gene82911:intron | 50.0% | |
| CGTTTCCGCTTTGACAACCA+TGG | + | chr6.1:2363065-2363084 | MS.gene82911:intron | 50.0% | |
| CTGCTATGGCAACAAGCAAG+GGG | + | chr6.1:2363197-2363216 | MS.gene82911:CDS | 50.0% | |
| GAGCTACGTAGTTGAGAACG+AGG | + | chr6.1:2363617-2363636 | MS.gene82911:CDS | 50.0% | |
| GAGTAGAGGGTTACAGCTGT+GGG | - | chr6.1:2362464-2362483 | None:intergenic | 50.0% | |
| GCTAGCGATTCTCTTCCTGA+TGG | - | chr6.1:2360773-2360792 | None:intergenic | 50.0% | |
| GCTGCTATGGCAACAAGCAA+GGG | + | chr6.1:2363196-2363215 | MS.gene82911:CDS | 50.0% | |
| GGACCACATGCATAGTACTC+AGG | + | chr6.1:2361471-2361490 | MS.gene82911:intron | 50.0% | |
| GGCCACCTCAAAAATTGACG+CGG | - | chr6.1:2363034-2363053 | None:intergenic | 50.0% | |
| GGGAAAAGCGGATCAAAAGC+GGG | + | chr6.1:2362179-2362198 | MS.gene82911:intron | 50.0% | |
| TGCTGCTATGGCAACAAGCA+AGG | + | chr6.1:2363195-2363214 | MS.gene82911:CDS | 50.0% | |
| TGGTTGTCAAAGCGGAAACG+CGG | - | chr6.1:2363065-2363084 | None:intergenic | 50.0% | |
| TTGGCCGCTATTGACAACAG+AGG | - | chr6.1:2362087-2362106 | None:intergenic | 50.0% | |
| TTGTCAATAGCGGCCAAACG+CGG | + | chr6.1:2362090-2362109 | MS.gene82911:intron | 50.0% | |
| !! | GAGTAGTGGGTTACAGCTGT+GGG | - | chr6.1:2362420-2362439 | None:intergenic | 50.0% |
| AGTCGCGCGTTAGGGAAAAG+CGG | + | chr6.1:2362167-2362186 | MS.gene82911:intron | 55.0% | |
| CAACCTTTACCGCTTGGAGG+AGG | + | chr6.1:2363588-2363607 | MS.gene82911:CDS | 55.0% | |
| CCACAACCTTTACCGCTTGG+AGG | + | chr6.1:2363585-2363604 | MS.gene82911:CDS | 55.0% | |
| CCTCAAAAATTGACGCGGCG+CGG | - | chr6.1:2363029-2363048 | None:intergenic | 55.0% | |
| CCTCCAAGCGGTAAAGGTTG+TGG | - | chr6.1:2363588-2363607 | None:intergenic | 55.0% | |
| GGACCACAACCTTTACCGCT+TGG | + | chr6.1:2363582-2363601 | MS.gene82911:CDS | 55.0% | |
| GGAGTAGAGGGTTACAGCTG+TGG | - | chr6.1:2362465-2362484 | None:intergenic | 55.0% | |
| GGCTGTCCTCCTGCAATTGT+AGG | - | chr6.1:2363546-2363565 | None:intergenic | 55.0% | |
| TCACCTCCTCCAAGCGGTAA+AGG | - | chr6.1:2363594-2363613 | None:intergenic | 55.0% | |
| ! | CGGATCAAAAGCGGGTTTCG+CGG | + | chr6.1:2362187-2362206 | MS.gene82911:intron | 55.0% |
| ! | CTTTTCCCTAACGCGCGACT+CGG | - | chr6.1:2362167-2362186 | None:intergenic | 55.0% |
| ! | GTAGGAGCATATTGCCCCTG+AGG | - | chr6.1:2363528-2363547 | None:intergenic | 55.0% |
| !! | AGGGTTTGGTGCTGTTCCTC+AGG | + | chr6.1:2363509-2363528 | MS.gene82911:CDS | 55.0% |
| !! | CGCCGCGTCAATTTTTGAGG+TGG | + | chr6.1:2363029-2363048 | MS.gene82911:intron | 55.0% |
| !! | CTGACGCGCTAGGCTGTTTT+CGG | - | chr6.1:2362137-2362156 | None:intergenic | 55.0% |
| !! | GGAGTAGTGGGTTACAGCTG+TGG | - | chr6.1:2362421-2362440 | None:intergenic | 55.0% |
| !! | GGGTTTGGTGCTGTTCCTCA+GGG | + | chr6.1:2363510-2363529 | MS.gene82911:CDS | 55.0% |
| !! | GGTTTGGTGCTGTTCCTCAG+GGG | + | chr6.1:2363511-2363530 | MS.gene82911:CDS | 55.0% |
| AATTGACGCGGCGCGGTATG+CGG | - | chr6.1:2363022-2363041 | None:intergenic | 60.0% | |
| ACAGCCTAGACCCACAGGCA+TGG | + | chr6.1:2363560-2363579 | MS.gene82911:CDS | 60.0% | |
| AGGTTGTGGTCCCATGCCTG+TGG | - | chr6.1:2363574-2363593 | None:intergenic | 60.0% | |
| CAGCCTAGACCCACAGGCAT+GGG | + | chr6.1:2363561-2363580 | MS.gene82911:CDS | 60.0% | |
| CGCTCCGCTACACCGAAAAG+CGG | - | chr6.1:2362213-2362232 | None:intergenic | 60.0% | |
| CTCGTGTCACCTCCTCCAAG+CGG | - | chr6.1:2363600-2363619 | None:intergenic | 60.0% | |
| GACAAGCAAGGGCTGGAGGA+TGG | + | chr6.1:2363652-2363671 | MS.gene82911:CDS | 60.0% | |
| GCGGGGGCTATTACATGACG+CGG | - | chr6.1:2362992-2363011 | None:intergenic | 60.0% | |
| GGTTGTGGTCCCATGCCTGT+GGG | - | chr6.1:2363573-2363592 | None:intergenic | 60.0% | |
| TTGAGGCGACAAGCAAGGGC+TGG | + | chr6.1:2363645-2363664 | MS.gene82911:CDS | 60.0% | |
| ! | CCGCGCCGCGTCAATTTTTG+AGG | + | chr6.1:2363026-2363045 | MS.gene82911:intron | 60.0% |
| !! | CGCTTTTCGGTGTAGCGGAG+CGG | + | chr6.1:2362211-2362230 | MS.gene82911:intron | 60.0% |
| !! | GCTTTTCGGTGTAGCGGAGC+GGG | + | chr6.1:2362212-2362231 | MS.gene82911:intron | 60.0% |
| AGGCGACAAGCAAGGGCTGG+AGG | + | chr6.1:2363648-2363667 | MS.gene82911:CDS | 65.0% | |
| ATTGACGCGGCGCGGTATGC+GGG | - | chr6.1:2363021-2363040 | None:intergenic | 65.0% | |
| GGAGGACAGCCTAGACCCAC+AGG | + | chr6.1:2363555-2363574 | MS.gene82911:CDS | 65.0% | |
| GGGTCAAAGGCGGCGCGATT+CGG | + | chr6.1:2362232-2362251 | MS.gene82911:intron | 65.0% | |
| GGTCAAAGGCGGCGCGATTC+GGG | + | chr6.1:2362233-2362252 | MS.gene82911:intron | 65.0% | |
| GGTCCCATGCCTGTGGGTCT+AGG | - | chr6.1:2363567-2363586 | None:intergenic | 65.0% | |
| ! | GGTGTAGCGGAGCGGGTCAA+AGG | + | chr6.1:2362219-2362238 | MS.gene82911:intron | 65.0% |
| ! | GTAGCGGAGCGGGTCAAAGG+CGG | + | chr6.1:2362222-2362241 | MS.gene82911:intron | 65.0% |
| !!! | CGGGTTTCGCGGCCGCTTTT+CGG | + | chr6.1:2362198-2362217 | MS.gene82911:intron | 65.0% |
| !!! | GCGGCCGCTTTTCGGTGTAG+CGG | + | chr6.1:2362206-2362225 | MS.gene82911:intron | 65.0% |
| CGCGACCGAGTCGCGCGTTA+GGG | + | chr6.1:2362159-2362178 | MS.gene82911:intron | 70.0% | |
| AGCGGAAACGCGGCGCGACG+CGG | - | chr6.1:2363055-2363074 | None:intergenic | 75.0% | |
| CGGTCGCGCTCTGACGCGCT+AGG | - | chr6.1:2362147-2362166 | None:intergenic | 75.0% | |
| GCGCGACCGAGTCGCGCGTT+AGG | + | chr6.1:2362158-2362177 | MS.gene82911:intron | 75.0% | |
| GGCCAAACGCGGCGCGATCG+CGG | + | chr6.1:2362101-2362120 | MS.gene82911:intron | 75.0% | |
| ! | AACGCGGCGCGATCGCGGCG+CGG | + | chr6.1:2362106-2362125 | MS.gene82911:intron | 80.0% |
| ! | CGCCGCGATCGCGCCGCGTT+TGG | - | chr6.1:2362106-2362125 | None:intergenic | 80.0% |
| ! | CGCGGTATGCGGGCGCGACG+CGG | - | chr6.1:2363011-2363030 | None:intergenic | 80.0% |
| ! | CGGTATGCGGGCGCGACGCG+GGG | - | chr6.1:2363009-2363028 | None:intergenic | 80.0% |
| ! | GCGGTATGCGGGCGCGACGC+GGG | - | chr6.1:2363010-2363029 | None:intergenic | 80.0% |
| ! | GGTATGCGGGCGCGACGCGG+GGG | - | chr6.1:2363008-2363027 | None:intergenic | 80.0% |
| ! | GGCGCGATCGCGGCGCGGCG+CGG | + | chr6.1:2362111-2362130 | MS.gene82911:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 2360730 | 2363737 | 2360730 | ID=MS.gene82911 |
| chr6.1 | mRNA | 2360730 | 2363737 | 2360730 | ID=MS.gene82911.t1;Parent=MS.gene82911 |
| chr6.1 | exon | 2360730 | 2360794 | 2360730 | ID=MS.gene82911.t1.exon1;Parent=MS.gene82911.t1 |
| chr6.1 | CDS | 2360730 | 2360794 | 2360730 | ID=cds.MS.gene82911.t1;Parent=MS.gene82911.t1 |
| chr6.1 | exon | 2361784 | 2361857 | 2361784 | ID=MS.gene82911.t1.exon2;Parent=MS.gene82911.t1 |
| chr6.1 | CDS | 2361784 | 2361857 | 2361784 | ID=cds.MS.gene82911.t1;Parent=MS.gene82911.t1 |
| chr6.1 | exon | 2361946 | 2362049 | 2361946 | ID=MS.gene82911.t1.exon3;Parent=MS.gene82911.t1 |
| chr6.1 | CDS | 2361946 | 2362049 | 2361946 | ID=cds.MS.gene82911.t1;Parent=MS.gene82911.t1 |
| chr6.1 | exon | 2363181 | 2363243 | 2363181 | ID=MS.gene82911.t1.exon4;Parent=MS.gene82911.t1 |
| chr6.1 | CDS | 2363181 | 2363243 | 2363181 | ID=cds.MS.gene82911.t1;Parent=MS.gene82911.t1 |
| chr6.1 | exon | 2363486 | 2363737 | 2363486 | ID=MS.gene82911.t1.exon5;Parent=MS.gene82911.t1 |
| chr6.1 | CDS | 2363486 | 2363737 | 2363486 | ID=cds.MS.gene82911.t1;Parent=MS.gene82911.t1 |
| Gene Sequence |
| Protein sequence |
